4D5Y Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4D5Y_001 | 1/2/37:44 | No text annotation Not in a motif group | geometric HL_4WF9_006 HL_23481.5 | |
| HL_4D5Y_002 | 1/2/68:73 | No text annotation Not in a motif group | geometric HL_4O26_001 HL_61984.1 | |
| HL_4D5Y_003 | 1/2/89:95 | No text annotation Not in a motif group | homologous HL_5TBW_003 HL_67216.5 | |
| HL_4D5Y_004 | 1/2/126:142 | No text annotation Not in a motif group | ||
| HL_4D5Y_005 | 1/2/200:209 | No text annotation Not in a motif group | ||
| HL_4D5Y_006 | 1/2/219:223 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98557.5 | |
| HL_4D5Y_007 | 1/2/227:235 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.6 | |
| HL_4D5Y_008 | 1/2/279:290 | No text annotation Not in a motif group | ||
| HL_4D5Y_009 | 1/2/305:314 | No text annotation Not in a motif group | homologous HL_5TBW_009 HL_46142.8 | |
| HL_4D5Y_010 | 1/2/359:364 | Other HL Not in a motif group | homologous HL_5TBW_010 HL_43074.18 | |
| HL_4D5Y_011 | 1/2/384:389 | No text annotation Not in a motif group | geometric HL_4O26_001 HL_61984.1 | |
| HL_4D5Y_013 | 1/2/1158:1163 | No text annotation Not in a motif group | ||
| HL_4D5Y_014 | 1/2/1297:1306 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_014 HL_33239.17 | |
| HL_4D5Y_015 | 1/2/1343:1354 | No text annotation Not in a motif group | ||
| HL_4D5Y_016 | 1/2/1369:1374 | GNRA Not in a motif group | homologous HL_5TBW_016 HL_43074.18 | |
| HL_4D5Y_017 | 1/2/1386:1391 | No text annotation Not in a motif group | ||
| HL_4D5Y_018 | 1/2/1416:1428 | No text annotation Not in a motif group | ||
| HL_4D5Y_019 | 1/2/1457:1466 | No text annotation Not in a motif group | ||
| HL_4D5Y_020 | 1/2/1540:1545 | No text annotation Not in a motif group | geometric HL_7RQB_011 HL_98557.5 | |
| HL_4D5Y_021 | 1/2/1572:1581 | No text annotation Not in a motif group | ||
| HL_4D5Y_022 | 1/2/1606:1614 | No text annotation Not in a motif group | homologous HL_5TBW_021 HL_05832.1 | |
| HL_4D5Y_023 | 1/2/1654:1659 | No text annotation Not in a motif group | geometric HL_5TBW_068 HL_46546.1 | |
| HL_4D5Y_024 | 1/2/1742:1748 | No text annotation Not in a motif group | ||
| HL_4D5Y_025 | 1/2/1795:1802 | No text annotation Not in a motif group | homologous HL_5TBW_024 HL_54035.7 | |
| HL_4D5Y_026 | 1/2/1842:1848 | GNRA Not in a motif group | homologous HL_5TBW_025 HL_43074.18 | |
| HL_4D5Y_027 | 1/2/1864:1871 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_72451.5 | |
| HL_4D5Y_030 | 1/2/2293:2298 | GNRA Not in a motif group | homologous HL_5TBW_030 HL_43074.18 | |
| HL_4D5Y_031 | 1/2/2353:2361 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_031 HL_33239.17 | |
| HL_4D5Y_032 | 1/2/2396:2404 | No text annotation Not in a motif group | geometric HL_7A0S_041 HL_60140.1 | |
| HL_4D5Y_033 | 1/2/2435:2440 | Other HL Not in a motif group | homologous HL_5TBW_033 HL_43074.18 | |
| HL_4D5Y_034 | 1/2/2463:2469 | No text annotation Not in a motif group | ||
| HL_4D5Y_035 | 1/2/2500:2509 | No text annotation Not in a motif group | homologous HL_5TBW_035 HL_78457.4 | |
| HL_4D5Y_036 | 1/2/2537:2544 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_58912.1 | |
| HL_4D5Y_037 | 1/2/2555:2560 | GNRA Not in a motif group | homologous HL_5TBW_036 HL_43074.18 | |
| HL_4D5Y_038 | 1/2/2601:2609 | No text annotation Not in a motif group | homologous HL_5TBW_037 HL_73793.2 | |
| HL_4D5Y_039 | 1/2/2641:2647 | Other HL Not in a motif group | geometric HL_4V9F_039 HL_68493.6 | |
| HL_4D5Y_040 | 1/2/2681:2689 | No text annotation Not in a motif group | ||
| HL_4D5Y_041 | 1/2/2715:2719 | No text annotation Not in a motif group | homologous HL_5TBW_040 HL_69353.7 | |
| HL_4D5Y_042 | 1/2/2769:2776 | No text annotation Not in a motif group | homologous HL_5TBW_041 HL_66171.3 | |
| HL_4D5Y_043 | 1/2/2787:2793 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_02361.6 | |
| HL_4D5Y_044 | 1/2/2849:2854 | UNCG Not in a motif group | geometric HL_5Y85_004 HL_79299.11 | |
| HL_4D5Y_046 | 1/2/3583:3587 | No text annotation Not in a motif group | homologous HL_5TBW_045 HL_99223.1 | |
| HL_4D5Y_047 | 1/2/3608:3618 | No text annotation Not in a motif group | homologous HL_5TBW_046 HL_43613.4 | |
| HL_4D5Y_048 | 1/2/3637:3643 | GNRA Not in a motif group | homologous HL_5TBW_047 HL_43074.18 | |
| HL_4D5Y_049 | 1/2/3693:3698 | Other HL Not in a motif group | homologous HL_5TBW_048 HL_43074.18 | |
| HL_4D5Y_050 | 1/2/3726:3736 | No text annotation Not in a motif group | homologous HL_5TBW_049 HL_98248.1 | |
| HL_4D5Y_051 | 1/2/3765:3773 | No text annotation Not in a motif group | homologous HL_5TBW_050 HL_53760.4 | |
| HL_4D5Y_052 | 1/2/3842:3851 | No text annotation Not in a motif group | homologous HL_5TBW_051 HL_90642.5 | |
| HL_4D5Y_053 | 1/2/4069:4075 | No text annotation Not in a motif group | ||
| HL_4D5Y_054 | 1/2/4102:4109 | No text annotation Not in a motif group | ||
| HL_4D5Y_055 | 1/2/4153:4161 | No text annotation Not in a motif group | homologous HL_5TBW_054 HL_46891.3 | |
| HL_4D5Y_056 | 1/2/4170:4182 | No text annotation Not in a motif group | homologous HL_5TBW_055 HL_19870.5 | |
| HL_4D5Y_057 | 1/2/4210:4218 | No text annotation Not in a motif group | homologous HL_5TBW_056 HL_76406.3 | |
| HL_4D5Y_058 | 1/2/4230:4237 | No text annotation Not in a motif group | homologous HL_5TBW_057 HL_46142.8 | |
| HL_4D5Y_059 | 1/2/4261:4269 | No text annotation Not in a motif group | ||
| HL_4D5Y_060 | 1/2/4280:4287 | No text annotation Not in a motif group | geometric HL_7A0S_056 HL_93727.5 | |
| HL_4D5Y_061 | 1/2/4312:4322 | No text annotation Not in a motif group | geometric HL_4V83_139 HL_16135.1 | |
| HL_4D5Y_062 | 1/2/4377:4385 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_36421.5 | |
| HL_4D5Y_063 | 1/2/4433:4442 | No text annotation Not in a motif group | ||
| HL_4D5Y_064 | 1/2/4457:4463 | No text annotation Not in a motif group | homologous HL_5TBW_063 HL_26055.6 | |
| HL_4D5Y_065 | 1/2/4500:4505 | GNRA Not in a motif group | homologous HL_5TBW_064 HL_43074.18 | |
| HL_4D5Y_066 | 1/2/4563:4568 | GNRA Not in a motif group | homologous HL_5TBW_065 HL_43074.18 | |
| HL_4D5Y_067 | 1/2/4606:4611 | Ribsomal LSU H95 Not in a motif group | homologous HL_5TBW_066 HL_67719.1 | |
| HL_4D5Y_068 | 1/2/4648:4662 | No text annotation Not in a motif group | homologous HL_5TBW_067 HL_56677.5 | |
| HL_4D5Y_069 | 1/2/4862:4869 | No text annotation Not in a motif group | ||
| HL_4D5Y_070 | 1/2/4930:4938 | No text annotation Not in a motif group | geometric HL_5TBW_070 HL_05018.6 | |
| HL_4D5Y_071 | 1/2/4975:4984 | No text annotation Not in a motif group | ||
| HL_4D5Y_072 | 1/3/47:56 | No text annotation Not in a motif group | geometric HL_7A0S_001 HL_29414.1 | |
| HL_4D5Y_073 | 1/3/69:88 | No text annotation Not in a motif group | ||
| HL_4D5Y_074 | 1/3/108:111 | No text annotation Not in a motif group | ||
| HL_4D5Y_075 | 1/3/122:128 | No text annotation Not in a motif group | ||
| HL_4D5Y_076 | 1/4/28:51 | No text annotation Not in a motif group | ||
| HL_4D5Y_077 | 1/4/86:91 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_43074.18 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4D5Y_012 | No text annotation | ||
| HL_4D5Y_028 | No text annotation | ||
| HL_4D5Y_029 | No text annotation | ||
| HL_4D5Y_045 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4D5Y_001 | 1/2/2:11, 1/3/145:155 | No text annotation Not in a motif group | ||
| IL_4D5Y_002 | 1/2/11:16, 1/3/141:145 | Other IL Not in a motif group | geometric IL_4WF9_084 IL_56467.6 | |
| IL_4D5Y_003 | 1/2/16:19, 1/3/138:141 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6CZR_168 IL_85877.10 | |
| IL_4D5Y_004 | 1/2/30:37, 1/2/44:52 | 9x8 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4WF9_008 IL_61812.1 | |
| IL_4D5Y_005 | 1/2/81:88, 1/2/96:102 | No text annotation Not in a motif group | homologous IL_5TBW_006 IL_29509.1 | |
| IL_4D5Y_006 | 1/2/177:179, 1/2/249:250 | Minor groove platform Not in a motif group | geometric IL_7A0S_028 IL_06437.11 | |
| IL_4D5Y_007 | 1/2/180:189, 1/2/246:248 | No text annotation Not in a motif group | geometric IL_7A0S_042 IL_01312.13 | |
| IL_4D5Y_008 | 1/2/339:341, 1/3/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_80007.16 | |
| IL_4D5Y_009 | 1/2/378:382, 1/2/390:405 | No text annotation Not in a motif group | ||
| IL_4D5Y_010 | 1/2/382:384, 1/2/389:390 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_72766.2 | |
| IL_4D5Y_011 | 1/2/406:412, 1/3/13:19 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_5TBW_015 IL_66414.5 | |
| IL_4D5Y_012 | 1/2/433:437, 1/2/1280:1285 | No text annotation Not in a motif group | ||
| IL_4D5Y_013 | 1/2/450:452, 1/2/683:685 | No text annotation Not in a motif group | geometric IL_4YHW_001 IL_01312.13 | |
| IL_4D5Y_014 | 1/2/454:465, 1/2/672:681 | No text annotation Not in a motif group | ||
| IL_4D5Y_015 | 1/2/471:479, 1/2/664:666 | No text annotation Not in a motif group | geometric IL_4V8Q_188 IL_01312.13 | |
| IL_4D5Y_016 | 1/2/482:484, 1/2/660:661 | No text annotation Not in a motif group | ||
| IL_4D5Y_017 | 1/2/487:490, 1/2/654:657 | No text annotation Not in a motif group | ||
| IL_4D5Y_018 | 1/2/491:493, 1/2/651:653 | UG cWW Not in a motif group | geometric IL_4LFB_061 IL_01312.13 | |
| IL_4D5Y_019 | 1/2/496:498, 1/2/646:648 | No text annotation Not in a motif group | geometric IL_4YHW_001 IL_01312.13 | |
| IL_4D5Y_020 | 1/2/500:503, 1/2/640:644 | No text annotation Not in a motif group | ||
| IL_4D5Y_021 | 1/2/710:712, 1/2/926:930 | No text annotation Not in a motif group | ||
| IL_4D5Y_022 | 1/2/714:717, 1/2/921:924 | No text annotation Not in a motif group | ||
| IL_4D5Y_023 | 1/2/718:725, 1/2/911:920 | No text annotation Not in a motif group | ||
| IL_4D5Y_024 | 1/2/728:730, 1/2/906:908 | UG cWW Not in a motif group | geometric IL_4LFB_061 IL_01312.13 | |
| IL_4D5Y_025 | 1/2/733:737, 1/2/900:903 | No text annotation Not in a motif group | ||
| IL_4D5Y_026 | 1/2/738:741, 1/2/894:899 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5EW4_002 IL_85877.10 | |
| IL_4D5Y_027 | 1/2/955:956, 1/2/1257:1259 | No text annotation Not in a motif group | ||
| IL_4D5Y_028 | 1/2/958:962, 1/2/1252:1255 | No text annotation Not in a motif group | ||
| IL_4D5Y_029 | 1/2/1057:1062, 1/2/1198:1203 | No text annotation Not in a motif group | ||
| IL_4D5Y_030 | 1/2/1063:1064, 1/2/1193:1197 | No text annotation Not in a motif group | ||
| IL_4D5Y_031 | 1/2/1064:1067, 1/2/1189:1193 | No text annotation Not in a motif group | ||
| IL_4D5Y_032 | 1/2/1077:1078, 1/2/1177:1179 | No text annotation Not in a motif group | ||
| IL_4D5Y_033 | 1/2/1092:1095, 1/2/1138:1141 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1L9A_005 IL_85877.10 | |
| IL_4D5Y_034 | 1/2/1153:1155, 1/2/1166:1168 | No text annotation Not in a motif group | geometric IL_5TBW_127 IL_01312.13 | |
| IL_4D5Y_035 | 1/2/1223:1225, 1/2/1245:1246 | No text annotation Not in a motif group | ||
| IL_4D5Y_036 | 1/2/1337:1341, 1/2/1356:1362 | No text annotation Not in a motif group | ||
| IL_4D5Y_037 | 1/2/1405:1409, 1/2/1435:1439 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05867.1 | |
| IL_4D5Y_038 | 1/2/1411:1414, 1/2/1430:1433 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_001 IL_85877.10 | |
| IL_4D5Y_039 | 1/2/1446:1447, 1/2/1475:1477 | Single bulged A Not in a motif group | homologous IL_5TBW_024 IL_80007.16 | |
| IL_4D5Y_040 | 1/2/1453:1455, 1/2/1468:1469 | No text annotation Not in a motif group | ||
| IL_4D5Y_041 | 1/2/1499:1501, 1/2/1634:1636 | No text annotation Not in a motif group | homologous IL_5TBW_027 IL_01312.13 | |
| IL_4D5Y_042 | 1/2/1501:1505, 1/2/1627:1634 | No text annotation Not in a motif group | geometric IL_7RQB_018 IL_17470.5 | |
| IL_4D5Y_043 | 1/2/1529:1534, 1/2/1551:1557 | No text annotation Not in a motif group | geometric IL_4V88_462 IL_19954.1 | |
| IL_4D5Y_044 | 1/2/1565:1568, 1/2/1584:1586 | Major groove platform with extra cWW Not in a motif group | homologous IL_5TBW_031 IL_95485.6 | |
| IL_4D5Y_045 | 1/2/1569:1571, 1/2/1582:1583 | Single bulged U Not in a motif group | homologous IL_5TBW_032 IL_83039.11 | |
| IL_4D5Y_046 | 1/2/1603:1605, 1/2/1615:1619 | Multiple bulged bases Not in a motif group | geometric IL_7A0S_021 IL_90991.5 | |
| IL_4D5Y_047 | 1/2/1650:1652, 1/2/1661:1663 | No text annotation Not in a motif group | homologous IL_5TBW_034 IL_01312.13 | |
| IL_4D5Y_048 | 1/2/1665:1667, 1/2/1826:1829 | No text annotation Not in a motif group | ||
| IL_4D5Y_050 | 1/2/1702:1704, 1/2/1816:1817 | Single bulged G Not in a motif group | geometric IL_5TBW_037 IL_59137.10 | |
| IL_4D5Y_051 | 1/2/1710:1716, 1/2/1771:1777 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5TBW_038 IL_93830.2 | |
| IL_4D5Y_052 | 1/2/1716:1717, 1/2/1769:1771 | Minor groove platform Not in a motif group | homologous IL_5TBW_039 IL_06437.11 | |
| IL_4D5Y_053 | 1/2/1718:1724, 1/2/1764:1768 | No text annotation Not in a motif group | geometric IL_4V9F_035 IL_21121.1 | |
| IL_4D5Y_054 | 1/2/1725:1728, 1/2/1760:1763 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_041 IL_85877.10 | |
| IL_4D5Y_055 | 1/2/1728:1731, 1/2/1757:1760 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6CZR_168 IL_85877.10 | |
| IL_4D5Y_056 | 1/2/1732:1736, 1/2/1754:1756 | No text annotation Not in a motif group | geometric IL_4V84_070 IL_34626.4 | |
| IL_4D5Y_057 | 1/2/1738:1742, 1/2/1748:1752 | No text annotation Not in a motif group | ||
| IL_4D5Y_058 | 1/2/1793:1795, 1/2/1802:1803 | No text annotation Not in a motif group | ||
| IL_4D5Y_059 | 1/2/1835:1838, 1/2/1852:1855 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4K27_001 IL_85877.10 | |
| IL_4D5Y_060 | 1/2/1883:1887, 1/2/2045:2049 | UAA/GAN Not in a motif group | homologous IL_5TBW_048 IL_53523.5 | |
| IL_4D5Y_061 | 1/2/1889:1898, 1/2/2041:2043 | No text annotation Not in a motif group | geometric IL_5Y85_006 IL_01312.13 | |
| IL_4D5Y_062 | 1/2/1898:1900, 1/2/2040:2041 | No text annotation Not in a motif group | ||
| IL_4D5Y_063 | 1/2/1904:1911, 1/2/2031:2036 | No text annotation Not in a motif group | geometric IL_5TBW_051 IL_17971.1 | |
| IL_4D5Y_064 | 1/2/1911:1922, 1/2/2016:2031 | No text annotation Not in a motif group | homologous IL_5TBW_052 IL_94878.1 | |
| IL_4D5Y_065 | 1/2/1924:1926, 1/2/2013:2014 | Single bulged U Not in a motif group | homologous IL_5TBW_053 IL_83039.11 | |
| IL_4D5Y_066 | 1/2/2060:2063, 1/2/2247:2250 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1MFQ_004 IL_85877.10 | |
| IL_4D5Y_067 | 1/2/2266:2268, 1/2/2319:2322 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_057 IL_01312.13 | |
| IL_4D5Y_068 | 1/2/2274:2277, 1/2/2311:2313 | No text annotation Not in a motif group | geometric IL_5UNE_004 IL_01312.13 | |
| IL_4D5Y_069 | 1/2/2277:2286, 1/2/2304:2311 | No text annotation Not in a motif group | ||
| IL_4D5Y_070 | 1/2/2288:2290, 1/2/2301:2302 | Single bulged A Not in a motif group | geometric IL_4R4V_004 IL_80007.16 | |
| IL_4D5Y_071 | 1/2/2335:2342, 1/2/3826:3832 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge Not in a motif group | geometric IL_4V9F_012 IL_59724.1 | |
| IL_4D5Y_072 | 1/2/2383:2386, 1/2/2760:2761 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V9F_050 IL_70995.6 | |
| IL_4D5Y_073 | 1/2/2392:2396, 1/2/2404:2406 | C-loop Not in a motif group | geometric IL_7RQB_051 IL_63596.4 | |
| IL_4D5Y_074 | 1/2/2423:2427, 1/2/2486:2491 | UAA/GAN Not in a motif group | homologous IL_5TBW_063 IL_53523.5 | |
| IL_4D5Y_075 | 1/2/2454:2456, 1/2/2476:2477 | No text annotation Not in a motif group | ||
| IL_4D5Y_076 | 1/2/2519:2521, 1/2/2749:2751 | Isolated cWH basepair Not in a motif group | geometric IL_3SJ2_003 IL_42589.6 | |
| IL_4D5Y_077 | 1/2/2523:2526, 1/2/2745:2747 | No text annotation Not in a motif group | geometric IL_7A0S_107 IL_01312.13 | |
| IL_4D5Y_078 | 1/2/2566:2570, 1/2/2729:2733 | Triple sheared Not in a motif group | geometric IL_5TBW_067 IL_56467.6 | |
| IL_4D5Y_079 | 1/2/2590:2591, 1/2/2701:2703 | No text annotation Not in a motif group | ||
| IL_4D5Y_080 | 1/2/2591:2592, 1/2/2699:2701 | Single stack bend Not in a motif group | homologous IL_5TBW_070 IL_72766.2 | |
| IL_4D5Y_081 | 1/2/2622:2625, 1/2/2662:2666 | No text annotation Not in a motif group | ||
| IL_4D5Y_082 | 1/2/2628:2630, 1/2/2658:2659 | No text annotation Not in a motif group | ||
| IL_4D5Y_083 | 1/2/2633:2640, 1/2/2648:2655 | No text annotation Not in a motif group | ||
| IL_4D5Y_084 | 1/2/2809:2815, 1/2/3819:3822 | No text annotation Not in a motif group | homologous IL_5TBW_074 IL_79393.8 | |
| IL_4D5Y_085 | 1/2/2821:2823, 1/2/3811:3813 | Isolated tWW turn Not in a motif group | homologous IL_5TBW_075 IL_54997.5 | |
| IL_4D5Y_086 | 1/2/2824:2827, 1/2/3809:3810 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5TBW_076 IL_80663.10 | |
| IL_4D5Y_087 | 1/2/2827:2832, 1/2/3806:3809 | Intercalated tWH Not in a motif group | homologous IL_5TBW_077 IL_98882.3 | |
| IL_4D5Y_088 | 1/2/2844:2849, 1/2/2854:2860 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_5TBW_078 IL_66584.5 | |
| IL_4D5Y_089 | 1/2/2866:2868, 1/2/3579:3581 | No text annotation Not in a motif group | homologous IL_5TBW_079 IL_01312.13 | |
| IL_4D5Y_090 | 1/2/2873:2874, 1/2/3571:3574 | No text annotation Not in a motif group | homologous IL_5TBW_080 IL_76195.1 | |
| IL_4D5Y_091 | 1/2/3601:3602, 1/2/3796:3798 | Single bulged A Not in a motif group | homologous IL_5TBW_082 IL_80007.16 | |
| IL_4D5Y_092 | 1/2/3629:3634, 1/2/3646:3653 | Kink-turn related Not in a motif group | homologous IL_5TBW_083 IL_95993.1 | |
| IL_4D5Y_093 | 1/2/3669:3672, 1/2/3718:3719 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_084 IL_72766.2 | |
| IL_4D5Y_094 | 1/2/3673:3674, 1/2/3714:3717 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_085 IL_13730.12 | |
| IL_4D5Y_095 | 1/2/3677:3679, 1/2/3710:3711 | No text annotation Not in a motif group | ||
| IL_4D5Y_096 | 1/2/3679:3683, 1/2/3708:3710 | No text annotation Not in a motif group | ||
| IL_4D5Y_097 | 1/2/3684:3690, 1/2/3701:3707 | No text annotation Not in a motif group | homologous IL_5TBW_088 IL_36973.5 | |
| IL_4D5Y_098 | 1/2/3723:3724, 1/2/3738:3740 | Single stack bend Not in a motif group | geometric IL_4C7O_002 IL_72766.2 | |
| IL_4D5Y_099 | 1/2/3749:3750, 1/2/3780:3783 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_089 IL_69632.1 | |
| IL_4D5Y_100 | 1/2/3750:3761, 1/2/3777:3780 | No text annotation Not in a motif group | geometric IL_5TBW_090 IL_45481.1 | |
| IL_4D5Y_101 | 1/2/3864:3867, 1/2/4523:4525 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_091 IL_87630.5 | |
| IL_4D5Y_102 | 1/2/3869:3871, 1/2/4518:4521 | Minor groove platform with intercalation Not in a motif group | homologous IL_5TBW_092 IL_86964.1 | |
| IL_4D5Y_103 | 1/2/3882:3885, 1/2/4347:4349 | UC cWW Not in a motif group | geometric IL_4V88_385 IL_01312.13 | |
| IL_4D5Y_104 | 1/2/3885:3886, 1/2/4344:4347 | Minor groove platform Not in a motif group | geometric IL_5TBW_094 IL_06437.11 | |
| IL_4D5Y_105 | 1/2/3895:3898, 1/2/4141:4145 | No text annotation Not in a motif group | ||
| IL_4D5Y_106 | 1/2/3917:3919, 1/2/4030:4033 | No text annotation Not in a motif group | ||
| IL_4D5Y_107 | 1/2/3919:3921, 1/2/4028:4030 | No text annotation Not in a motif group | geometric IL_4WF9_020 IL_01312.13 | |
| IL_4D5Y_108 | 1/2/3923:3935, 1/2/4023:4026 | No text annotation Not in a motif group | ||
| IL_4D5Y_109 | 1/2/3939:3942, 1/2/4006:4019 | No text annotation Not in a motif group | geometric IL_1MZP_003 IL_75283.1 | |
| IL_4D5Y_110 | 1/2/4050:4059, 1/2/4118:4124 | No text annotation Not in a motif group | ||
| IL_4D5Y_111 | 1/2/4151:4152, 1/2/4162:4164 | Single bulged A Not in a motif group | homologous IL_5TBW_098 IL_80007.16 | |
| IL_4D5Y_112 | 1/2/4203:4205, 1/2/4223:4227 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_4V9F_076 IL_38958.6 | |
| IL_4D5Y_113 | 1/2/4255:4258, 1/2/4272:4275 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_100 IL_85877.10 | |
| IL_4D5Y_114 | 1/2/4307:4310, 1/2/4324:4325 | Single stack bend Not in a motif group | geometric IL_4V83_236 IL_04038.4 | |
| IL_4D5Y_115 | 1/2/4360:4361, 1/2/4402:4404 | Major groove platform Not in a motif group | geometric IL_7RQB_092 IL_80663.10 | |
| IL_4D5Y_116 | 1/2/4361:4363, 1/2/4400:4402 | No text annotation Not in a motif group | geometric IL_5TBW_021 IL_01312.13 | |
| IL_4D5Y_117 | 1/2/4363:4365, 1/2/4399:4400 | Major groove platform Not in a motif group | homologous IL_5TBW_104 IL_80663.10 | |
| IL_4D5Y_118 | 1/2/4365:4367, 1/2/4395:4399 | No text annotation Not in a motif group | geometric IL_5TBW_105 IL_07931.5 | |
| IL_4D5Y_119 | 1/2/4372:4376, 1/2/4386:4390 | Triple sheared Not in a motif group | homologous IL_5TBW_106 IL_56467.6 | |
| IL_4D5Y_120 | 1/2/4413:4414, 1/2/4486:4488 | Major groove platform Not in a motif group | homologous IL_5TBW_107 IL_80663.10 | |
| IL_4D5Y_121 | 1/2/4416:4418, 1/2/4480:4484 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_108 IL_01312.13 | |
| IL_4D5Y_122 | 1/2/4418:4419, 1/2/4477:4480 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_109 IL_13730.12 | |
| IL_4D5Y_123 | 1/2/4426:4428, 1/2/4449:4451 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_01312.13 | |
| IL_4D5Y_124 | 1/2/4428:4430, 1/2/4445:4449 | No text annotation Not in a motif group | ||
| IL_4D5Y_125 | 1/2/4455:4457, 1/2/4463:4465 | Isolated cWH basepair Not in a motif group | geometric IL_4V88_453 IL_42589.6 | |
| IL_4D5Y_126 | 1/2/4497:4499, 1/2/4506:4509 | No text annotation Not in a motif group | geometric IL_4V8Q_188 IL_01312.13 | |
| IL_4D5Y_127 | 1/2/4540:4545, 1/2/4677:4682 | No text annotation Not in a motif group | ||
| IL_4D5Y_128 | 1/2/4556:4563, 1/2/4568:4574 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_116 IL_04346.5 | |
| IL_4D5Y_129 | 1/2/4583:4590, 1/2/4628:4634 | No text annotation Not in a motif group | ||
| IL_4D5Y_130 | 1/2/4592:4597, 1/2/4622:4626 | UAA/GAN related Not in a motif group | geometric IL_5TBW_118 IL_53523.5 | |
| IL_4D5Y_131 | 1/2/4597:4600, 1/2/4619:4622 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4WF9_109 IL_85877.10 | |
| IL_4D5Y_132 | 1/2/4600:4602, 1/2/4615:4619 | Isolated cWS basepair Not in a motif group | geometric IL_5TBW_047 IL_67621.5 | |
| IL_4D5Y_133 | 1/2/4640:4645, 1/2/4665:4670 | UAA/GAN with extra cWW Not in a motif group | geometric IL_5J7L_350 IL_49767.4 | |
| IL_4D5Y_134 | 1/2/4698:4701, 1/2/4913:4915 | No text annotation Not in a motif group | ||
| IL_4D5Y_135 | 1/2/4702:4705, 1/2/4909:4912 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_001 IL_85877.10 | |
| IL_4D5Y_136 | 1/2/4728:4730, 1/2/4818:4820 | No text annotation Not in a motif group | geometric IL_4V9F_105 IL_01312.13 | |
| IL_4D5Y_137 | 1/2/4733:4737, 1/2/4810:4815 | No text annotation Not in a motif group | ||
| IL_4D5Y_138 | 1/2/4739:4744, 1/2/4806:4808 | No text annotation Not in a motif group | ||
| IL_4D5Y_139 | 1/2/4745:4747, 1/2/4802:4805 | No text annotation Not in a motif group | ||
| IL_4D5Y_140 | 1/2/4840:4844, 1/2/4885:4889 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05867.1 | |
| IL_4D5Y_141 | 1/2/4846:4851, 1/2/4879:4883 | No text annotation Not in a motif group | ||
| IL_4D5Y_142 | 1/2/4854:4856, 1/2/4875:4876 | No text annotation Not in a motif group | ||
| IL_4D5Y_143 | 1/2/4923:4924, 1/2/5018:5020 | Single bulged G Not in a motif group | geometric IL_3SUX_001 IL_59137.10 | |
| IL_4D5Y_144 | 1/2/4927:4930, 1/2/4938:4941 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_129 IL_85877.10 | |
| IL_4D5Y_145 | 1/2/4947:4949, 1/2/5012:5014 | No text annotation Not in a motif group | geometric IL_3LA5_001 IL_01312.13 | |
| IL_4D5Y_146 | 1/2/4951:4952, 1/2/5008:5010 | Single bulged U Not in a motif group | homologous IL_5TBW_131 IL_21340.1 | |
| IL_4D5Y_147 | 1/2/4955:4958, 1/2/4999:5005 | No text annotation Not in a motif group | ||
| IL_4D5Y_148 | 1/2/4958:4964, 1/2/4994:4999 | No text annotation Not in a motif group | ||
| IL_4D5Y_149 | 1/2/4967:4969, 1/2/4990:4991 | Single bulged C Not in a motif group | geometric IL_3HHN_003 IL_61258.10 | |
| IL_4D5Y_150 | 1/2/4969:4972, 1/2/4987:4990 | tWS-tSW Not in a motif group | homologous IL_5TBW_135 IL_09705.7 | |
| IL_4D5Y_151 | 1/3/64:67, 1/3/91:95 | No text annotation Not in a motif group | ||
| IL_4D5Y_152 | 1/3/68:69, 1/3/88:90 | Single bulged U Not in a motif group | geometric IL_5TBW_146 IL_83039.11 | |
| IL_4D5Y_153 | 1/4/1:2, 1/4/117:119 | Single stack bend Not in a motif group | geometric IL_2QWY_008 IL_04038.4 | |
| IL_4D5Y_154 | 1/4/15:16, 1/4/62:64 | No text annotation Not in a motif group | ||
| IL_4D5Y_155 | 1/4/21:27, 1/4/52:57 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_05523.1 | |
| IL_4D5Y_156 | 1/4/72:78, 1/4/98:103 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_4WF9_100 IL_35110.5 | |
| IL_4D5Y_157 | 1/4/79:81, 1/4/95:97 | Isolated cWH basepair Not in a motif group | geometric IL_4WZM_001 IL_01312.13 | |
| IL_4D5Y_158 | 1/4/82:85, 1/4/92:94 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_01312.13 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4D5Y_049 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4D5Y_001 | 1/2/371:378, 1/2/405:406, 1/3/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_4D5Y_002 | 1/2/963:969, 1/2/1215:1223, 1/2/1246:1251 | No text annotation Not in a motif group | ||
| J3_4D5Y_003 | 1/2/970:977, 1/2/1052:1057, 1/2/1203:1214 | No text annotation Not in a motif group | ||
| J3_4D5Y_004 | 1/2/1080:1088, 1/2/1145:1149, 1/2/1172:1175 | No text annotation Not in a motif group | ||
| J3_4D5Y_005 | 1/2/1510:1516, 1/2/1601:1603, 1/2/1619:1622 | No text annotation Not in a motif group | homologous J3_5TBW_004 NA | |
| J3_4D5Y_006 | 1/2/1524:1527, 1/2/1559:1563, 1/2/1588:1593 | No text annotation Not in a motif group | homologous J3_5TBW_005 NA | |
| J3_4D5Y_007 | 1/2/2370:2376, 1/2/2782:2784, 1/2/2796:2799 | No text annotation Not in a motif group | homologous J3_5TBW_008 NA | |
| J3_4D5Y_008 | 1/2/2379:2382, 1/2/2762:2768, 1/2/2777:2779 | No text annotation Not in a motif group | homologous J3_5TBW_009 NA | |
| J3_4D5Y_009 | 1/2/2526:2533, 1/2/2548:2552, 1/2/2734:2745 | No text annotation Not in a motif group | ||
| J3_4D5Y_010 | 1/2/2552:2553, 1/2/2562:2566, 1/2/2733:2734 | No text annotation Not in a motif group | ||
| J3_4D5Y_011 | 1/2/3905:3908, 1/2/4042:4047, 1/2/4127:4134 | No text annotation Not in a motif group | homologous J3_5TBW_012 NA | |
| J3_4D5Y_012 | 1/2/4201:4203, 1/2/4227:4229, 1/2/4238:4243 | No text annotation Not in a motif group | homologous J3_5TBW_013 NA | |
| J3_4D5Y_013 | 1/2/4423:4426, 1/2/4451:4453, 1/2/4467:4473 | No text annotation Not in a motif group | homologous J3_5TBW_014 NA | |
| J3_4D5Y_014 | 1/2/4925:4927, 1/2/4941:4947, 1/2/5014:5017 | No text annotation Not in a motif group | ||
| J3_4D5Y_015 | 1/3/44:45, 1/3/58:64, 1/3/95:99 | No text annotation Not in a motif group | ||
| J3_4D5Y_016 | 1/4/8:15, 1/4/64:67, 1/4/108:111 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
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