Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4KZZ_0011/i/7:17No text annotation
Not in a motif group
homologous
HL_4V88_186
HL_67265.4
HL_4KZZ_0021/i/69:80No text annotation
Not in a motif group
HL_4KZZ_0031/i/156:162Other HL
Not in a motif group
homologous
HL_4V88_188
HL_43074.18
HL_4KZZ_0041/i/194:201No text annotation
Not in a motif group
geometric
HL_2Y9H_005
HL_56387.1
HL_4KZZ_0061/i/279:286T-loop with 1 bulged base
Not in a motif group
homologous
HL_4V88_191
HL_68493.6
HL_4KZZ_0071/i/312:319No text annotation
Not in a motif group
HL_4KZZ_0081/i/367:377No text annotation
Not in a motif group
geometric
HL_3SKL_006
HL_51033.1
HL_4KZZ_0091/i/406:411No text annotation
Not in a motif group
homologous
HL_4V88_194
HL_18785.1
HL_4KZZ_0101/i/431:442No text annotation
Not in a motif group
homologous
HL_4V88_195
HL_22443.1
HL_4KZZ_0111/i/452:457UNCG
Not in a motif group
homologous
HL_4V88_196
HL_79299.11
HL_4KZZ_0121/i/488:494No text annotation
Not in a motif group
homologous
HL_4V88_197
HL_50374.1
HL_4KZZ_0131/i/529:534GNRA
Not in a motif group
geometric
HL_4FRG_002
HL_43074.18
HL_4KZZ_0141/i/559:571No text annotation
Not in a motif group
geometric
HL_4V88_199
HL_17086.2
HL_4KZZ_0151/i/608:613Other HL
Not in a motif group
homologous
HL_4V88_200
HL_43074.18
HL_4KZZ_0171/i/816:824No text annotation
Not in a motif group
homologous
HL_4V88_203
HL_72066.1
HL_4KZZ_0181/i/829:837No text annotation
Not in a motif group
HL_4KZZ_0191/i/881:897No text annotation
Not in a motif group
homologous
HL_4V88_205
HL_03603.1
HL_4KZZ_0201/i/953:962No text annotation
Not in a motif group
homologous
HL_4V88_206
HL_87219.4
HL_4KZZ_0211/i/990:995Other HL
Not in a motif group
homologous
HL_4V88_207
HL_43074.18
HL_4KZZ_0221/i/1050:1060No text annotation
Not in a motif group
homologous
HL_4V88_208
HL_87219.4
HL_4KZZ_0231/i/1108:1117No text annotation
Not in a motif group
HL_4KZZ_0251/i/1174:1179GNRA
Not in a motif group
homologous
HL_4V88_211
HL_43074.18
HL_4KZZ_0261/i/1241:1250No text annotation
Not in a motif group
homologous
HL_4V88_212
HL_96854.1
HL_4KZZ_0271/i/1291:1300No text annotation
Not in a motif group
homologous
HL_4V88_213
HL_30819.1
HL_4KZZ_0291/i/1362:1369No text annotation
Not in a motif group
homologous
HL_4V88_215
HL_54035.7
HL_4KZZ_0301/i/1417:1422GNRA
Not in a motif group
geometric
HL_3SUX_002
HL_43074.18
HL_4KZZ_0311/i/1456:1462No text annotation
Not in a motif group
homologous
HL_4V88_217
HL_67216.5
HL_4KZZ_0321/i/1560:1565GNRA
Not in a motif group
homologous
HL_4V88_218
HL_43074.18
HL_4KZZ_0331/i/1609:1620No text annotation
Not in a motif group
homologous
HL_4V88_219
HL_32458.3
HL_4KZZ_0351/i/1841:1846Other HL
Not in a motif group
homologous
HL_4V88_222
HL_43074.18
HL_4KZZ_0361/j/13:21No text annotation
Not in a motif group
homologous
HL_5B63_003
HL_31320.1
HL_4KZZ_0381/j/52:60T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5AH5_008
HL_33239.17

Problematic loops

#loop idProblemSequence
HL_4KZZ_005No text annotation
HL_4KZZ_016No text annotation
HL_4KZZ_024Other HL
HL_4KZZ_028GNRA
HL_4KZZ_034No text annotation
HL_4KZZ_037No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4KZZ_0011/i/23:25,
1/i/639:641
No text annotation
Not in a motif group
geometric
IL_5TBW_021
IL_01312.13
IL_4KZZ_0031/i/37:40,
1/i/504:508
Double sheared
Not in a motif group
geometric
IL_4WF9_016
IL_09705.7
IL_4KZZ_0041/i/41:47,
1/i/469:471
No text annotation
Not in a motif group
homologous
IL_4V88_387
IL_34626.4
IL_4KZZ_0061/i/57:62,
1/i/86:88
No text annotation
Not in a motif group
homologous
IL_4V88_389
IL_96451.1
IL_4KZZ_0071/i/63:68,
1/i/81:85
No text annotation
Not in a motif group
homologous
IL_4V88_390
IL_59423.1
IL_4KZZ_0081/i/108:110,
1/i/341:343
No text annotation
Not in a motif group
geometric
IL_1ZX7_004
IL_01312.13
IL_4KZZ_0101/i/112:115,
1/i/338:339
Multiple bulged bases
Not in a motif group
homologous
IL_4V88_392
IL_13730.12
IL_4KZZ_0111/i/116:121,
1/i/333:337
No text annotation
Not in a motif group
homologous
IL_4V88_393
IL_76386.1
IL_4KZZ_0121/i/145:151,
1/i/167:174
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_4V88_394
IL_92440.5
IL_4KZZ_0131/i/152:154,
1/i/164:166
No text annotation
Not in a motif group
geometric
IL_2ZNI_001
IL_01312.13
IL_4KZZ_0141/i/186:191,
1/i/204:209
No text annotation
Not in a motif group
geometric
IL_4N0T_001
IL_94518.4
IL_4KZZ_0151/i/192:194,
1/i/201:203
UU cWW
Not in a motif group
geometric
IL_1ZZ5_002
IL_01312.13
IL_4KZZ_0161/i/213:216,
1/i/293:300
No text annotation
Not in a motif group
IL_4KZZ_0181/i/237:239,
1/i/271:272
No text annotation
Not in a motif group
IL_4KZZ_0191/i/303:305,
1/i/326:327
No text annotation
Not in a motif group
IL_4KZZ_0211/i/308:310,
1/i/321:323
No text annotation
Not in a motif group
IL_4KZZ_0221/i/349:354,
1/i/386:393
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4V88_402
IL_29549.9
IL_4KZZ_0231/i/356:361,
1/i/383:384
No text annotation
Not in a motif group
geometric
IL_5Y58_001
IL_98882.3
IL_4KZZ_0241/i/401:403,
1/i/414:419
No text annotation
Not in a motif group
homologous
IL_4V88_404
IL_46732.1
IL_4KZZ_0251/i/427:429,
1/i/444:446
Isolated cWH basepair
Not in a motif group
homologous
IL_4V88_405
IL_42589.6
IL_4KZZ_0261/i/449:451,
1/i/458:460
Isolated near basepair
Not in a motif group
homologous
IL_4V88_406
IL_01312.13
IL_4KZZ_0271/i/477:479,
1/i/501:502
Single bulged U
Not in a motif group
homologous
IL_4V88_407
IL_83039.11
IL_4KZZ_0281/i/481:486,
1/i/496:499
C-loop with extra cWW pair
Not in a motif group
homologous
IL_4V88_408
IL_51590.1
IL_4KZZ_0291/i/519:521,
1/i/543:546
No text annotation
Not in a motif group
IL_4KZZ_0301/i/524:525,
1/i/538:540
Single stack bend
Not in a motif group
geometric
IL_5J7L_044
IL_04038.4
IL_4KZZ_0311/i/525:527,
1/i/536:538
No text annotation
Not in a motif group
geometric
IL_4WF9_055
IL_01312.13
IL_4KZZ_0321/i/556:559,
1/i/571:574
Double sheared
Not in a motif group
geometric
IL_4LFB_060
IL_09705.7
IL_4KZZ_0331/i/588:598,
1/i/625:628
No text annotation
Not in a motif group
IL_4KZZ_0341/i/601:607,
1/i/614:622
No text annotation
Not in a motif group
homologous
IL_4V88_415
IL_04667.1
IL_4KZZ_0351/i/653:655,
1/i/1158:1160
No text annotation
Not in a motif group
geometric
IL_4KNQ_003
IL_07262.1
IL_4KZZ_0361/i/655:661,
1/i/1157:1158
No text annotation
Not in a motif group
geometric
IL_4V88_416
IL_12418.1
IL_4KZZ_0371/i/663:665,
1/i/1026:1028
No text annotation
Not in a motif group
homologous
IL_4V88_417
IL_01312.13
IL_4KZZ_0381/i/666:670,
1/i/1021:1025
tSH-tHW-tHS
Not in a motif group
homologous
IL_4V88_418
IL_39521.5
IL_4KZZ_0411/i/687:691,
1/i/725:729
No text annotation
Not in a motif group
geometric
IL_5TBW_121
IL_05867.1
IL_4KZZ_0421/i/741:743,
1/i/790:792
No text annotation
Not in a motif group
geometric
IL_5TBW_079
IL_01312.13
IL_4KZZ_0431/i/798:799,
1/i/856:859
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4V88_423
IL_09061.4
IL_4KZZ_0441/i/800:803,
1/i/852:855
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_7A0S_040
IL_85877.10
IL_4KZZ_0451/i/803:812,
1/i/844:852
No text annotation
Not in a motif group
IL_4KZZ_0461/i/870:872,
1/i/906:907
Single stack bend
Not in a motif group
geometric
IL_7KGA_003
IL_04038.4
IL_4KZZ_0471/i/872:875,
1/i/903:906
No text annotation
Not in a motif group
IL_4KZZ_0501/i/920:923,
1/i/1010:1014
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_429
IL_85877.10
IL_4KZZ_0511/i/924:927,
1/i/1006:1009
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_430
IL_85877.10
IL_4KZZ_0521/i/927:931,
1/i/1003:1006
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_431
IL_85877.10
IL_4KZZ_0531/i/938:941,
1/i/977:980
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_432
IL_85877.10
IL_4KZZ_0541/i/948:952,
1/i/963:970
Kink-turn
Not in a motif group
homologous
IL_4V88_434
IL_29549.9
IL_4KZZ_0561/i/1038:1043,
1/i/1067:1069
Other IL
Not in a motif group
geometric
IL_4V88_435
IL_51590.1
IL_4KZZ_0571/i/1043:1047,
1/i/1063:1067
tSH-tHW-tHS
Not in a motif group
homologous
IL_4V88_436
IL_39521.5
IL_4KZZ_0581/i/1087:1090,
1/i/1147:1154
No text annotation
Not in a motif group
IL_4KZZ_0591/i/1094:1097,
1/i/1127:1130
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_438
IL_85877.10
IL_4KZZ_0601/i/1097:1099,
1/i/1125:1127
No text annotation
Not in a motif group
geometric
IL_1RPU_001
IL_01312.13
IL_4KZZ_0611/i/1104:1106,
1/i/1119:1120
Single bulged C
Not in a motif group
geometric
IL_4WF9_035
IL_61258.10
IL_4KZZ_0621/i/1106:1108,
1/i/1117:1119
No text annotation
Not in a motif group
geometric
IL_4V9F_023
IL_01312.13
IL_4KZZ_0631/i/1164:1171,
1/i/1182:1187
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4V88_440
IL_24606.1
IL_4KZZ_0651/i/1202:1204,
1/i/1686:1687
Single bulged G
Not in a motif group
homologous
IL_4V88_442
IL_59137.10
IL_4KZZ_0661/i/1209:1213,
1/i/1676:1681
C-loop with extra cWW pair
Not in a motif group
geometric
IL_4V88_408
IL_51590.1
IL_4KZZ_0671/i/1226:1228,
1/i/1521:1523
No text annotation
Not in a motif group
homologous
IL_4V88_444
IL_01312.13
IL_4KZZ_0681/i/1231:1233,
1/i/1515:1518
No text annotation
Not in a motif group
IL_4KZZ_0691/i/1266:1268,
1/i/1506:1507
Single stack bend
Not in a motif group
geometric
IL_7A0S_022
IL_04038.4
IL_4KZZ_0701/i/1277:1283,
1/i/1310:1312
No text annotation
Not in a motif group
IL_4KZZ_0711/i/1283:1286,
1/i/1305:1310
No text annotation
Not in a motif group
IL_4KZZ_0721/i/1287:1289,
1/i/1302:1304
No text annotation
Not in a motif group
homologous
IL_4V88_448
IL_01312.13
IL_4KZZ_0731/i/1321:1323,
1/i/1498:1499
Single bulged U
Not in a motif group
homologous
IL_4V88_449
IL_83039.11
IL_4KZZ_0761/i/1330:1331,
1/i/1488:1492
Minor groove platform
Not in a motif group
geometric
IL_5J7L_048
IL_06437.11
IL_4KZZ_0781/i/1343:1345,
1/i/1376:1378
Isolated cWH basepair
Not in a motif group
homologous
IL_4V88_453
IL_42589.6
IL_4KZZ_0791/i/1359:1361,
1/i/1370:1371
Minor groove platform
Not in a motif group
geometric
IL_5ML7_009
IL_06437.11
IL_4KZZ_0811/i/1398:1402,
1/i/1436:1440
No text annotation
Not in a motif group
homologous
IL_5TBW_452
NA
IL_4KZZ_0821/i/1404:1407,
1/i/1431:1434
No text annotation
Not in a motif group
IL_4KZZ_0831/i/1407:1409,
1/i/1429:1431
No text annotation
Not in a motif group
IL_4KZZ_0841/i/1411:1413,
1/i/1425:1427
No text annotation
Not in a motif group
IL_4KZZ_0851/i/1413:1415,
1/i/1424:1425
Major groove platform
Not in a motif group
geometric
IL_5Y85_005
IL_80663.10
IL_4KZZ_0861/i/1449:1452,
1/i/1466:1471
No text annotation
Not in a motif group
IL_4KZZ_0871/i/1532:1536,
1/i/1587:1591
No text annotation
Not in a motif group
geometric
IL_4V88_422
IL_79670.1
IL_4KZZ_0881/i/1545:1553,
1/i/1572:1577
No text annotation
Not in a motif group
geometric
IL_6CZR_161
IL_75461.2
IL_4KZZ_0891/i/1555:1557,
1/i/1568:1570
No text annotation
Not in a motif group
geometric
IL_7A0S_107
IL_01312.13
IL_4KZZ_0911/i/1599:1605,
1/i/1624:1630
No text annotation
Not in a motif group
IL_4KZZ_0921/i/1695:1697,
1/i/1827:1830
No text annotation
Not in a motif group
geometric
IL_4V88_463
IL_36143.2
IL_4KZZ_0931/i/1697:1700,
1/i/1823:1827
No text annotation
Not in a motif group
homologous
IL_4V88_464
IL_59281.1
IL_4KZZ_0941/i/1701:1703,
1/i/1820:1822
No text annotation
Not in a motif group
geometric
IL_4V88_465
IL_01312.13
IL_4KZZ_0951/i/1703:1706,
1/i/1816:1820
No text annotation
Not in a motif group
geometric
IL_6AZ4_001
IL_01759.1
IL_4KZZ_0961/i/1709:1711,
1/i/1811:1813
AA cWW
Not in a motif group
homologous
IL_4V88_467
IL_01312.13
IL_4KZZ_0971/i/1712:1715,
1/i/1807:1810
Double sheared
Not in a motif group
geometric
IL_4V88_468
IL_09705.7
IL_4KZZ_0981/i/1715:1717,
1/i/1806:1807
No text annotation
Not in a motif group
IL_4KZZ_0991/i/1723:1726,
1/i/1797:1800
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_402D_001
IL_85877.10
IL_4KZZ_1001/i/1728:1731,
1/i/1792:1795
Double sheared
Not in a motif group
geometric
IL_4V88_471
IL_09705.7
IL_4KZZ_1011/i/1731:1733,
1/i/1790:1792
No text annotation
Not in a motif group
homologous
IL_4V88_472
IL_01312.13
IL_4KZZ_1021/i/1734:1737,
1/i/1786:1789
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_473
IL_85877.10
IL_4KZZ_1031/i/1737:1741,
1/i/1782:1786
Triple sheared
Not in a motif group
geometric
IL_4V88_474
IL_56467.6
IL_4KZZ_1041/i/1742:1744,
1/i/1779:1781
No text annotation
Not in a motif group
geometric
IL_3LA5_001
IL_01312.13
IL_4KZZ_1051/i/1745:1747,
1/i/1774:1778
Other IL
Not in a motif group
geometric
IL_5TBW_064
IL_87630.5
IL_4KZZ_1061/i/1747:1749,
1/i/1771:1774
No text annotation
Not in a motif group
IL_4KZZ_1071/i/1749:1752,
1/i/1768:1771
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4WF9_110
IL_85877.10

Problematic loops

#loop idProblemSequence
IL_4KZZ_002UC cWW
IL_4KZZ_005Minor groove platform
IL_4KZZ_009No text annotation
IL_4KZZ_017No text annotation
IL_4KZZ_020Self complementary
IL_4KZZ_039No text annotation
IL_4KZZ_040No text annotation
IL_4KZZ_048Isolated cWH basepair
IL_4KZZ_049Isolated cWH basepair
IL_4KZZ_055No text annotation
IL_4KZZ_064Single bulged A
IL_4KZZ_074Isolated cWS basepair
IL_4KZZ_075No text annotation
IL_4KZZ_077Single bulged A
IL_4KZZ_080Tandem non-canonical cWW pairs
IL_4KZZ_090No text annotation
IL_4KZZ_108No text annotation
IL_4KZZ_109No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4KZZ_0011/i/672:674,
1/i/914:919,
1/i/1015:1019
No text annotation
Not in a motif group
J3_4KZZ_0021/i/934:937,
1/i/981:989,
1/i/996:1000
No text annotation
Not in a motif group
homologous
J3_4V88_033
NA
J3_4KZZ_0031/i/1090:1093,
1/i/1131:1136,
1/i/1143:1147
No text annotation
Not in a motif group
J3_4KZZ_0041/i/1214:1217,
1/i/1640:1646,
1/i/1668:1675
No text annotation
Not in a motif group
homologous
J3_4V88_035
NA
J3_4KZZ_0051/i/1221:1224,
1/i/1525:1527,
1/i/1633:1636
No text annotation
Not in a motif group
J3_4KZZ_0061/i/1233:1240,
1/i/1251:1262,
1/i/1511:1515
No text annotation
Not in a motif group
J3_4KZZ_0071/i/1268:1273,
1/i/1316:1320,
1/i/1500:1506
No text annotation
Not in a motif group
homologous
J3_4V88_038
NA
J3_4KZZ_0081/i/1336:1341,
1/i/1380:1385,
1/i/1477:1482
No text annotation
Not in a motif group
J3_4KZZ_0091/i/1387:1391,
1/i/1446:1449,
1/i/1471:1475
No text annotation
Not in a motif group
J3_4KZZ_0101/i/1527:1531,
1/i/1592:1599,
1/i/1630:1633
No text annotation
Not in a motif group
homologous
J3_4V88_041
NA

Problematic loops

No problematic loops


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