4U4O Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4U4O_001 | 1/1/38:45 | No text annotation Not in a motif group | homologous HL_5TBW_001 HL_23481.5 | |
| HL_4U4O_002 | 1/1/69:74 | No text annotation Not in a motif group | homologous HL_5TBW_002 HL_96776.3 | |
| HL_4U4O_003 | 1/1/90:96 | No text annotation Not in a motif group | homologous HL_5TBW_003 HL_67216.5 | |
| HL_4U4O_004 | 1/1/132:136 | No text annotation Not in a motif group | homologous HL_5TBW_004 HL_36982.3 | |
| HL_4U4O_005 | 1/1/194:201 | T-loop with 1 bulged base Not in a motif group | homologous HL_5TBW_005 HL_68493.6 | |
| HL_4U4O_006 | 1/1/208:212 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98557.5 | |
| HL_4U4O_007 | 1/1/216:224 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.6 | |
| HL_4U4O_008 | 1/1/278:287 | No text annotation Not in a motif group | homologous HL_5TBW_008 HL_54035.7 | |
| HL_4U4O_010 | 1/1/357:362 | Other HL Not in a motif group | homologous HL_5TBW_010 HL_43074.18 | |
| HL_4U4O_011 | 1/1/382:387 | GNRA Not in a motif group | homologous HL_5TBW_011 HL_43074.18 | |
| HL_4U4O_012 | 1/1/543:548 | No text annotation Not in a motif group | homologous HL_5TBW_012 HL_94386.1 | |
| HL_4U4O_013 | 1/1/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_43074.18 | |
| HL_4U4O_014 | 1/1/640:649 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_014 HL_33239.17 | |
| HL_4U4O_015 | 1/1/686:694 | No text annotation Not in a motif group | homologous HL_5TBW_015 HL_80105.3 | |
| HL_4U4O_016 | 1/1/707:712 | GNRA Not in a motif group | homologous HL_5TBW_016 HL_43074.18 | |
| HL_4U4O_017 | 1/1/732:737 | GNRA Not in a motif group | homologous HL_5TBW_017 HL_43074.18 | |
| HL_4U4O_022 | 1/1/958:963 | No text annotation Not in a motif group | homologous HL_5TBW_022 HL_15942.5 | |
| HL_4U4O_025 | 1/1/1126:1132 | GNRA Not in a motif group | homologous HL_5TBW_025 HL_43074.18 | |
| HL_4U4O_026 | 1/1/1148:1155 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_72451.5 | |
| HL_4U4O_030 | 1/1/1403:1408 | GNRA Not in a motif group | homologous HL_5TBW_030 HL_43074.18 | |
| HL_4U4O_061 | 1/1/2840:2848 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_36421.5 | |
| HL_4U4O_062 | 1/1/2897:2904 | No text annotation Not in a motif group | homologous HL_5TBW_062 HL_92681.5 | |
| HL_4U4O_063 | 1/1/2920:2926 | No text annotation Not in a motif group | homologous HL_5TBW_063 HL_26055.6 | |
| HL_4U4O_065 | 1/1/3025:3030 | GNRA Not in a motif group | geometric HL_5TBW_065 HL_43074.18 | |
| HL_4U4O_066 | 1/1/3068:3073 | Ribsomal LSU H95 Not in a motif group | homologous HL_5TBW_066 HL_67719.1 | |
| HL_4U4O_067 | 1/1/3110:3124 | No text annotation Not in a motif group | homologous HL_5TBW_067 HL_56677.5 | |
| HL_4U4O_068 | 1/1/3194:3197 | No text annotation Not in a motif group | geometric HL_5TBW_068 HL_46546.1 | |
| HL_4U4O_069 | 1/1/3240:3247 | No text annotation Not in a motif group | homologous HL_5TBW_069 HL_27757.1 | |
| HL_4U4O_070 | 1/1/3303:3311 | No text annotation Not in a motif group | homologous HL_5TBW_070 HL_05018.6 | |
| HL_4U4O_071 | 1/1/3350:3353 | No text annotation Not in a motif group | homologous HL_5TBW_071 HL_69353.7 | |
| HL_4U4O_073 | 1/2/70:81 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98557.5 | |
| HL_4U4O_074 | 1/2/154:160 | Other HL Not in a motif group | homologous HL_4V88_188 HL_43074.18 | |
| HL_4U4O_075 | 1/2/190:195 | No text annotation Not in a motif group | homologous HL_4V88_189 HL_39228.1 | |
| HL_4U4O_077 | 1/2/243:250 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_68493.6 | |
| HL_4U4O_078 | 1/2/276:279 | No text annotation Not in a motif group | geometric HL_4WF9_037 HL_69353.7 | |
| HL_4U4O_079 | 1/2/330:338 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_93727.5 | |
| HL_4U4O_080 | 1/2/367:374 | No text annotation Not in a motif group | geometric HL_5TBW_012 HL_94386.1 | |
| HL_4U4O_081 | 1/2/393:404 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_22443.1 | |
| HL_4U4O_082 | 1/2/414:419 | UNCG Not in a motif group | geometric HL_4V88_196 HL_79299.11 | |
| HL_4U4O_083 | 1/2/450:456 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_50374.1 | |
| HL_4U4O_085 | 1/2/516:536 | No text annotation Not in a motif group | ||
| HL_4U4O_092 | 1/2/937:942 | Other HL Not in a motif group | homologous HL_4V88_207 HL_43074.18 | |
| HL_4U4O_094 | 1/2/1055:1064 | No text annotation Not in a motif group | ||
| HL_4U4O_095 | 1/2/1084:1089 | Other HL Not in a motif group | homologous HL_4V88_210 HL_43074.18 | |
| HL_4U4O_105 | 1/2/1594:1602 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_01181.4 | |
| HL_4U4O_108 | 1/3/36:41 | No text annotation Not in a motif group | homologous HL_5TBW_185 HL_02733.5 | |
| HL_4U4O_109 | 1/3/88:93 | GNRA Not in a motif group | homologous HL_4V9F_072 HL_43074.18 | |
| HL_4U4O_110 | 1/4/73:78 | Other HL Not in a motif group | homologous HL_5TBW_074 HL_02361.6 | |
| HL_4U4O_111 | 1/4/108:114 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_06569.2 | |
| HL_4U4O_112 | 1/4/124:129 | No text annotation Not in a motif group | homologous HL_5TBW_076 HL_60357.1 | |
| HL_4U4O_113 | 1/5/38:45 | No text annotation Not in a motif group | geometric HL_5TBW_001 HL_23481.5 | |
| HL_4U4O_114 | 1/5/69:74 | No text annotation Not in a motif group | homologous HL_5TBW_002 HL_96776.3 | |
| HL_4U4O_115 | 1/5/90:96 | No text annotation Not in a motif group | homologous HL_5TBW_003 HL_67216.5 | |
| HL_4U4O_116 | 1/5/132:136 | No text annotation Not in a motif group | homologous HL_5TBW_004 HL_36982.3 | |
| HL_4U4O_117 | 1/5/194:201 | T-loop with 1 bulged base Not in a motif group | homologous HL_5TBW_005 HL_68493.6 | |
| HL_4U4O_118 | 1/5/208:212 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98557.5 | |
| HL_4U4O_119 | 1/5/216:224 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.6 | |
| HL_4U4O_120 | 1/5/278:287 | No text annotation Not in a motif group | ||
| HL_4U4O_121 | 1/5/303:312 | No text annotation Not in a motif group | geometric HL_4QLM_002 HL_17926.5 | |
| HL_4U4O_122 | 1/5/357:362 | Other HL Not in a motif group | homologous HL_5TBW_010 HL_43074.18 | |
| HL_4U4O_123 | 1/5/382:387 | GNRA Not in a motif group | homologous HL_5TBW_011 HL_43074.18 | |
| HL_4U4O_124 | 1/5/543:548 | No text annotation Not in a motif group | geometric HL_6DME_002 HL_79299.11 | |
| HL_4U4O_125 | 1/5/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_43074.18 | |
| HL_4U4O_126 | 1/5/640:649 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_014 HL_33239.17 | |
| HL_4U4O_127 | 1/5/686:694 | No text annotation Not in a motif group | homologous HL_5TBW_015 HL_80105.3 | |
| HL_4U4O_128 | 1/5/707:712 | GNRA Not in a motif group | homologous HL_5TBW_016 HL_43074.18 | |
| HL_4U4O_129 | 1/5/732:737 | GNRA Not in a motif group | homologous HL_5TBW_017 HL_43074.18 | |
| HL_4U4O_130 | 1/5/763:768 | No text annotation Not in a motif group | homologous HL_5TBW_018 HL_00996.1 | |
| HL_4U4O_131 | 1/5/844:849 | GNRA Not in a motif group | homologous HL_5TBW_019 HL_43074.18 | |
| HL_4U4O_132 | 1/5/876:885 | No text annotation Not in a motif group | homologous HL_5TBW_020 HL_39334.5 | |
| HL_4U4O_133 | 1/5/910:918 | No text annotation Not in a motif group | homologous HL_5TBW_021 HL_05832.1 | |
| HL_4U4O_134 | 1/5/958:963 | No text annotation Not in a motif group | homologous HL_5TBW_022 HL_15942.5 | |
| HL_4U4O_136 | 1/5/1076:1083 | No text annotation Not in a motif group | geometric HL_5TBW_024 HL_54035.7 | |
| HL_4U4O_137 | 1/5/1126:1132 | GNRA Not in a motif group | homologous HL_5TBW_025 HL_43074.18 | |
| HL_4U4O_138 | 1/5/1148:1155 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_72451.5 | |
| HL_4U4O_142 | 1/5/1402:1409 | No text annotation Not in a motif group | geometric HL_7A0S_056 HL_93727.5 | |
| HL_4U4O_143 | 1/5/1462:1470 | No text annotation Not in a motif group | ||
| HL_4U4O_144 | 1/5/1506:1512 | No text annotation Not in a motif group | homologous HL_5TBW_032 HL_86880.5 | |
| HL_4U4O_145 | 1/5/1544:1549 | Other HL Not in a motif group | homologous HL_5TBW_033 HL_43074.18 | |
| HL_4U4O_147 | 1/5/1599:1608 | No text annotation Not in a motif group | homologous HL_5TBW_035 HL_78457.4 | |
| HL_4U4O_148 | 1/5/1634:1639 | GNRA Not in a motif group | homologous HL_5TBW_036 HL_43074.18 | |
| HL_4U4O_149 | 1/5/1680:1688 | No text annotation Not in a motif group | homologous HL_5TBW_037 HL_73793.2 | |
| HL_4U4O_150 | 1/5/1719:1725 | No text annotation Not in a motif group | homologous HL_5TBW_038 HL_00923.1 | |
| HL_4U4O_152 | 1/5/1792:1796 | No text annotation Not in a motif group | homologous HL_5TBW_040 HL_69353.7 | |
| HL_4U4O_153 | 1/5/1844:1851 | No text annotation Not in a motif group | homologous HL_5TBW_041 HL_66171.3 | |
| HL_4U4O_154 | 1/5/1862:1868 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_02361.6 | |
| HL_4U4O_155 | 1/5/1923:1928 | UNCG Not in a motif group | homologous HL_5TBW_043 HL_79299.11 | |
| HL_4U4O_157 | 1/5/2110:2114 | No text annotation Not in a motif group | homologous HL_5TBW_045 HL_99223.1 | |
| HL_4U4O_158 | 1/5/2135:2145 | No text annotation Not in a motif group | homologous HL_5TBW_046 HL_43613.4 | |
| HL_4U4O_159 | 1/5/2164:2170 | GNRA Not in a motif group | homologous HL_5TBW_047 HL_43074.18 | |
| HL_4U4O_160 | 1/5/2220:2225 | Other HL Not in a motif group | homologous HL_5TBW_048 HL_43074.18 | |
| HL_4U4O_161 | 1/5/2253:2263 | No text annotation Not in a motif group | homologous HL_5TBW_049 HL_98248.1 | |
| HL_4U4O_162 | 1/5/2292:2300 | No text annotation Not in a motif group | homologous HL_5TBW_050 HL_53760.4 | |
| HL_4U4O_163 | 1/5/2369:2378 | No text annotation Not in a motif group | homologous HL_5TBW_051 HL_90642.5 | |
| HL_4U4O_165 | 1/5/2533:2546 | No text annotation Not in a motif group | ||
| HL_4U4O_166 | 1/5/2568:2573 | No text annotation Not in a motif group | ||
| HL_4U4O_167 | 1/5/2616:2624 | No text annotation Not in a motif group | homologous HL_5TBW_054 HL_46891.3 | |
| HL_4U4O_168 | 1/5/2633:2645 | No text annotation Not in a motif group | homologous HL_5TBW_055 HL_19870.5 | |
| HL_4U4O_169 | 1/5/2673:2681 | No text annotation Not in a motif group | homologous HL_5TBW_056 HL_76406.3 | |
| HL_4U4O_170 | 1/5/2693:2700 | No text annotation Not in a motif group | homologous HL_5TBW_057 HL_46142.8 | |
| HL_4U4O_171 | 1/5/2724:2732 | No text annotation Not in a motif group | homologous HL_5TBW_058 HL_14725.1 | |
| HL_4U4O_172 | 1/5/2744:2749 | GNRA Not in a motif group | homologous HL_5TBW_059 HL_43074.18 | |
| HL_4U4O_173 | 1/5/2776:2784 | No text annotation Not in a motif group | homologous HL_5TBW_060 HL_46142.8 | |
| HL_4U4O_174 | 1/5/2840:2848 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_36421.5 | |
| HL_4U4O_175 | 1/5/2897:2904 | No text annotation Not in a motif group | homologous HL_5TBW_062 HL_92681.5 | |
| HL_4U4O_176 | 1/5/2920:2926 | No text annotation Not in a motif group | geometric HL_5TBW_063 HL_26055.6 | |
| HL_4U4O_177 | 1/5/2963:2968 | GNRA Not in a motif group | homologous HL_5TBW_064 HL_43074.18 | |
| HL_4U4O_178 | 1/5/3025:3030 | GNRA Not in a motif group | geometric HL_4OQU_003 HL_43074.18 | |
| HL_4U4O_179 | 1/5/3067:3074 | No text annotation Not in a motif group | ||
| HL_4U4O_180 | 1/5/3110:3124 | No text annotation Not in a motif group | homologous HL_5TBW_067 HL_56677.5 | |
| HL_4U4O_181 | 1/5/3194:3197 | No text annotation Not in a motif group | homologous HL_5TBW_068 HL_46546.1 | |
| HL_4U4O_182 | 1/5/3240:3247 | No text annotation Not in a motif group | homologous HL_5TBW_069 HL_27757.1 | |
| HL_4U4O_183 | 1/5/3303:3311 | No text annotation Not in a motif group | homologous HL_5TBW_070 HL_05018.6 | |
| HL_4U4O_184 | 1/5/3350:3353 | No text annotation Not in a motif group | homologous HL_5TBW_071 HL_69353.7 | |
| HL_4U4O_185 | 1/6/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_67265.4 | |
| HL_4U4O_187 | 1/6/154:160 | Other HL Not in a motif group | homologous HL_4V88_188 HL_43074.18 | |
| HL_4U4O_188 | 1/6/190:195 | No text annotation Not in a motif group | homologous HL_4V88_189 HL_39228.1 | |
| HL_4U4O_189 | 1/6/230:235 | No text annotation Not in a motif group | homologous HL_4V88_190 HL_37407.2 | |
| HL_4U4O_190 | 1/6/243:250 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_68493.6 | |
| HL_4U4O_191 | 1/6/276:279 | No text annotation Not in a motif group | ||
| HL_4U4O_192 | 1/6/330:338 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_93727.5 | |
| HL_4U4O_193 | 1/6/368:373 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_18785.1 | |
| HL_4U4O_194 | 1/6/393:404 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_22443.1 | |
| HL_4U4O_195 | 1/6/414:419 | UNCG Not in a motif group | homologous HL_4V88_196 HL_79299.11 | |
| HL_4U4O_196 | 1/6/450:456 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_50374.1 | |
| HL_4U4O_198 | 1/6/520:532 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_17086.2 | |
| HL_4U4O_199 | 1/6/569:574 | Other HL Not in a motif group | homologous HL_4V88_200 HL_43074.18 | |
| HL_4U4O_202 | 1/6/764:772 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_72066.1 | |
| HL_4U4O_203 | 1/6/777:783 | No text annotation Not in a motif group | homologous HL_4V88_204 HL_83225.1 | |
| HL_4U4O_204 | 1/6/828:844 | No text annotation Not in a motif group | geometric HL_4V83_139 HL_16135.1 | |
| HL_4U4O_205 | 1/6/900:909 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_87219.4 | |
| HL_4U4O_206 | 1/6/937:942 | Other HL Not in a motif group | homologous HL_4V88_207 HL_43074.18 | |
| HL_4U4O_207 | 1/6/997:1007 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_87219.4 | |
| HL_4U4O_208 | 1/6/1055:1064 | No text annotation Not in a motif group | homologous HL_4V88_209 HL_32255.1 | |
| HL_4U4O_209 | 1/6/1084:1089 | Other HL Not in a motif group | homologous HL_4V88_210 HL_43074.18 | |
| HL_4U4O_210 | 1/6/1121:1126 | GNRA Not in a motif group | homologous HL_4V88_211 HL_43074.18 | |
| HL_4U4O_211 | 1/6/1188:1197 | No text annotation Not in a motif group | homologous HL_4V88_212 HL_96854.1 | |
| HL_4U4O_212 | 1/6/1238:1247 | No text annotation Not in a motif group | homologous HL_4V88_213 HL_30819.1 | |
| HL_4U4O_213 | 1/6/1296:1301 | GNRA Not in a motif group | homologous HL_4V88_214 HL_43074.18 | |
| HL_4U4O_214 | 1/6/1309:1316 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_54035.7 | |
| HL_4U4O_215 | 1/6/1359:1364 | No text annotation Not in a motif group | homologous HL_4V88_216 HL_82678.2 | |
| HL_4U4O_216 | 1/6/1396:1402 | No text annotation Not in a motif group | homologous HL_4V88_217 HL_67216.5 | |
| HL_4U4O_217 | 1/6/1501:1506 | GNRA Not in a motif group | homologous HL_4V88_218 HL_43074.18 | |
| HL_4U4O_218 | 1/6/1550:1561 | No text annotation Not in a motif group | homologous HL_4V88_219 HL_32458.3 | |
| HL_4U4O_219 | 1/6/1594:1602 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_01181.4 | |
| HL_4U4O_221 | 1/6/1778:1783 | Other HL Not in a motif group | homologous HL_4V88_222 HL_43074.18 | |
| HL_4U4O_222 | 1/7/36:41 | No text annotation Not in a motif group | homologous HL_5TBW_185 HL_02733.5 | |
| HL_4U4O_223 | 1/7/88:93 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_43074.18 | |
| HL_4U4O_224 | 1/8/47:56 | No text annotation Not in a motif group | geometric HL_7A0S_001 HL_29414.1 | |
| HL_4U4O_225 | 1/8/69:89 | No text annotation Not in a motif group | ||
| HL_4U4O_226 | 1/8/108:114 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_06569.2 | |
| HL_4U4O_227 | 1/8/124:129 | No text annotation Not in a motif group | homologous HL_5TBW_076 HL_60357.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4U4O_009 | No text annotation | ||
| HL_4U4O_018 | No text annotation | ||
| HL_4U4O_019 | GNRA | ||
| HL_4U4O_020 | No text annotation | ||
| HL_4U4O_021 | No text annotation | ||
| HL_4U4O_023 | GNRA | ||
| HL_4U4O_024 | No text annotation | ||
| HL_4U4O_027 | No text annotation | ||
| HL_4U4O_028 | No text annotation | ||
| HL_4U4O_029 | No text annotation | ||
| HL_4U4O_031 | T-loop with 2 stacked bulged bases | ||
| HL_4U4O_032 | No text annotation | ||
| HL_4U4O_033 | Other HL | ||
| HL_4U4O_034 | No text annotation | ||
| HL_4U4O_035 | GNRA | ||
| HL_4U4O_036 | No text annotation | ||
| HL_4U4O_037 | No text annotation | ||
| HL_4U4O_038 | No text annotation | ||
| HL_4U4O_039 | No text annotation | ||
| HL_4U4O_040 | No text annotation | ||
| HL_4U4O_041 | GNRA with one bulged base | ||
| HL_4U4O_042 | UNCG | ||
| HL_4U4O_043 | No text annotation | ||
| HL_4U4O_044 | No text annotation | ||
| HL_4U4O_045 | No text annotation | ||
| HL_4U4O_046 | GNRA | ||
| HL_4U4O_047 | Other HL | ||
| HL_4U4O_048 | No text annotation | ||
| HL_4U4O_049 | No text annotation | ||
| HL_4U4O_050 | No text annotation | ||
| HL_4U4O_051 | No text annotation | ||
| HL_4U4O_052 | No text annotation | ||
| HL_4U4O_053 | No text annotation | ||
| HL_4U4O_054 | No text annotation | ||
| HL_4U4O_055 | No text annotation | ||
| HL_4U4O_056 | No text annotation | ||
| HL_4U4O_057 | No text annotation | ||
| HL_4U4O_058 | No text annotation | ||
| HL_4U4O_059 | GNRA | ||
| HL_4U4O_060 | No text annotation | ||
| HL_4U4O_064 | GNRA | ||
| HL_4U4O_072 | No text annotation | ||
| HL_4U4O_076 | No text annotation | ||
| HL_4U4O_084 | No text annotation | ||
| HL_4U4O_086 | Other HL | ||
| HL_4U4O_087 | No text annotation | ||
| HL_4U4O_088 | No text annotation | ||
| HL_4U4O_089 | No text annotation | ||
| HL_4U4O_090 | No text annotation | ||
| HL_4U4O_091 | No text annotation | ||
| HL_4U4O_093 | No text annotation | ||
| HL_4U4O_096 | GNRA | ||
| HL_4U4O_097 | No text annotation | ||
| HL_4U4O_098 | No text annotation | ||
| HL_4U4O_099 | GNRA | ||
| HL_4U4O_100 | No text annotation | ||
| HL_4U4O_101 | No text annotation | ||
| HL_4U4O_102 | No text annotation | ||
| HL_4U4O_103 | GNRA | ||
| HL_4U4O_104 | No text annotation | ||
| HL_4U4O_106 | No text annotation | ||
| HL_4U4O_107 | Other HL | ||
| HL_4U4O_135 | No text annotation | ||
| HL_4U4O_139 | No text annotation | ||
| HL_4U4O_140 | No text annotation | ||
| HL_4U4O_141 | No text annotation | ||
| HL_4U4O_146 | No text annotation | ||
| HL_4U4O_151 | No text annotation | ||
| HL_4U4O_156 | No text annotation | ||
| HL_4U4O_164 | No text annotation | ||
| HL_4U4O_186 | No text annotation | ||
| HL_4U4O_197 | No text annotation | ||
| HL_4U4O_200 | No text annotation | ||
| HL_4U4O_201 | No text annotation | ||
| HL_4U4O_220 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4U4O_001 | 1/1/3:4, 1/4/155:156 | No text annotation Not in a motif group | ||
| IL_4U4O_002 | 1/1/7:8, 1/4/150:152 | Single bulged C Not in a motif group | homologous IL_5TBW_002 IL_61258.10 | |
| IL_4U4O_003 | 1/1/13:15, 1/4/144:145 | Single bulged U Not in a motif group | homologous IL_5TBW_003 IL_83039.11 | |
| IL_4U4O_004 | 1/1/27:28, 1/1/56:58 | Single stack bend Not in a motif group | homologous IL_5TBW_004 IL_04038.4 | |
| IL_4U4O_005 | 1/1/31:38, 1/1/45:53 | tSH-tHW-tHH-tHS Not in a motif group | geometric IL_5TBW_005 IL_22863.1 | |
| IL_4U4O_006 | 1/1/82:89, 1/1/97:103 | No text annotation Not in a motif group | homologous IL_5TBW_006 IL_29509.1 | |
| IL_4U4O_007 | 1/1/123:124, 1/1/144:149 | No text annotation Not in a motif group | geometric IL_5TBW_007 IL_19724.1 | |
| IL_4U4O_008 | 1/1/125:127, 1/1/141:143 | No text annotation Not in a motif group | homologous IL_5TBW_008 IL_01312.13 | |
| IL_4U4O_009 | 1/1/163:165, 1/1/257:258 | Single stack bend Not in a motif group | homologous IL_5TBW_009 IL_04038.4 | |
| IL_4U4O_010 | 1/1/169:170, 1/1/248:253 | No text annotation Not in a motif group | homologous IL_5TBW_010 IL_76195.1 | |
| IL_4U4O_011 | 1/1/177:179, 1/1/237:241 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_011 IL_87630.5 | |
| IL_4U4O_012 | 1/1/189:191, 1/1/204:205 | Single bulged U Not in a motif group | homologous IL_5TBW_012 IL_83039.11 | |
| IL_4U4O_013 | 1/1/337:339, 1/4/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_80007.16 | |
| IL_4U4O_014 | 1/1/376:379, 1/1/390:403 | No text annotation Not in a motif group | homologous IL_5TBW_014 IL_60992.5 | |
| IL_4U4O_015 | 1/1/404:410, 1/4/13:19 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5TBW_015 IL_66414.5 | |
| IL_4U4O_016 | 1/1/429:431, 1/1/628:630 | No text annotation Not in a motif group | homologous IL_5TBW_016 IL_01312.13 | |
| IL_4U4O_018 | 1/1/512:513, 1/1/577:579 | Single bulged A Not in a motif group | homologous IL_5TBW_018 IL_40508.4 | |
| IL_4U4O_019 | 1/1/517:525, 1/1/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_41593.1 | |
| IL_4U4O_020 | 1/1/531:538, 1/1/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_94501.1 | |
| IL_4U4O_021 | 1/1/668:670, 1/1/792:794 | No text annotation Not in a motif group | homologous IL_5TBW_021 IL_01312.13 | |
| IL_4U4O_022 | 1/1/680:684, 1/1/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_92343.1 | |
| IL_4U4O_023 | 1/1/725:728, 1/1/741:745 | UAA/GAN Not in a motif group | homologous IL_5TBW_023 IL_53523.5 | |
| IL_4U4O_024 | 1/1/752:753, 1/1/779:781 | Single bulged A Not in a motif group | homologous IL_5TBW_024 IL_80007.16 | |
| IL_4U4O_025 | 1/1/755:756, 1/1/775:777 | Single bulged U Not in a motif group | homologous IL_5TBW_025 IL_83039.11 | |
| IL_4U4O_027 | 1/1/803:805, 1/1/938:940 | No text annotation Not in a motif group | geometric IL_5TBW_027 IL_01312.13 | |
| IL_4U4O_028 | 1/1/805:809, 1/1/931:938 | No text annotation Not in a motif group | homologous IL_5TBW_028 IL_17470.5 | |
| IL_4U4O_033 | 1/1/954:956, 1/1/965:967 | No text annotation Not in a motif group | homologous IL_5TBW_034 IL_01312.13 | |
| IL_4U4O_034 | 1/1/969:970, 1/1/1111:1113 | Single stack bend Not in a motif group | homologous IL_5TBW_035 IL_04038.4 | |
| IL_4U4O_035 | 1/1/977:982, 1/1/1101:1104 | No text annotation Not in a motif group | ||
| IL_4U4O_036 | 1/1/982:985, 1/1/1099:1101 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5ML7_010 IL_01312.13 | |
| IL_4U4O_045 | 1/1/1120:1122, 1/1/1136:1138 | No text annotation Not in a motif group | homologous IL_5TBW_046 IL_01312.13 | |
| IL_4U4O_046 | 1/1/1123:1125, 1/1/1133:1135 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_047 IL_67621.5 | |
| IL_4U4O_047 | 1/1/1167:1171, 1/1/1328:1332 | UAA/GAN Not in a motif group | homologous IL_5TBW_048 IL_53523.5 | |
| IL_4U4O_048 | 1/1/1173:1180, 1/1/1325:1326 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5TBW_049 IL_15861.6 | |
| IL_4U4O_049 | 1/1/1180:1182, 1/1/1324:1325 | Single bulged U Not in a motif group | homologous IL_5TBW_050 IL_83039.11 | |
| IL_4U4O_050 | 1/1/1187:1194, 1/1/1314:1319 | No text annotation Not in a motif group | homologous IL_5TBW_051 IL_17971.1 | |
| IL_4U4O_051 | 1/1/1194:1205, 1/1/1299:1314 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_94878.1 | |
| IL_4U4O_052 | 1/1/1207:1209, 1/1/1296:1297 | Single bulged U Not in a motif group | homologous IL_5TBW_053 IL_83039.11 | |
| IL_4U4O_053 | 1/1/1218:1228, 1/1/1281:1287 | No text annotation Not in a motif group | ||
| IL_4U4O_054 | 1/1/1376:1378, 1/1/1428:1431 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_057 IL_01312.13 | |
| IL_4U4O_055 | 1/1/1385:1387, 1/1/1420:1421 | Single bulged A Not in a motif group | homologous IL_5TBW_058 IL_80007.16 | |
| IL_4U4O_056 | 1/1/1388:1395, 1/1/1415:1419 | Kink-turn Not in a motif group | homologous IL_5TBW_059 IL_29549.9 | |
| IL_4U4O_057 | 1/1/1398:1400, 1/1/1411:1412 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_80007.16 | |
| IL_4U4O_058 | 1/1/1444:1450, 1/1/2354:2359 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_061 IL_35110.5 | |
| IL_4U4O_086 | 1/1/2391:2394, 1/1/2986:2988 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_091 IL_87630.5 | |
| IL_4U4O_097 | 1/1/2824:2826, 1/1/2863:2865 | No text annotation Not in a motif group | geometric IL_5TBW_103 IL_05265.1 | |
| IL_4U4O_098 | 1/1/2826:2828, 1/1/2862:2863 | Major groove platform Not in a motif group | geometric IL_5TBW_104 IL_80663.10 | |
| IL_4U4O_099 | 1/1/2828:2830, 1/1/2858:2862 | No text annotation Not in a motif group | geometric IL_5TBW_105 IL_07931.5 | |
| IL_4U4O_100 | 1/1/2835:2840, 1/1/2848:2853 | No text annotation Not in a motif group | ||
| IL_4U4O_101 | 1/1/2876:2878, 1/1/2948:2951 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5ML7_010 IL_01312.13 | |
| IL_4U4O_102 | 1/1/2879:2881, 1/1/2943:2947 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_108 IL_01312.13 | |
| IL_4U4O_103 | 1/1/2881:2882, 1/1/2940:2943 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_109 IL_13730.12 | |
| IL_4U4O_104 | 1/1/2889:2891, 1/1/2912:2914 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_01312.13 | |
| IL_4U4O_105 | 1/1/2891:2892, 1/1/2909:2912 | Minor groove platform with intercalation Not in a motif group | geometric IL_5TBW_111 IL_95601.1 | |
| IL_4U4O_106 | 1/1/2918:2920, 1/1/2926:2928 | No text annotation Not in a motif group | geometric IL_5TBW_112 IL_01312.13 | |
| IL_4U4O_108 | 1/1/3004:3007, 1/1/3139:3144 | Double sheared Not in a motif group | homologous IL_5TBW_114 IL_09705.7 | |
| IL_4U4O_109 | 1/1/3012:3014, 1/1/3040:3042 | No text annotation Not in a motif group | homologous IL_5TBW_115 IL_01312.13 | |
| IL_4U4O_110 | 1/1/3018:3025, 1/1/3030:3036 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_116 IL_04346.5 | |
| IL_4U4O_111 | 1/1/3047:3051, 1/1/3091:3094 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_5TBW_117 IL_28060.3 | |
| IL_4U4O_112 | 1/1/3054:3059, 1/1/3084:3088 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_53523.5 | |
| IL_4U4O_113 | 1/1/3063:3064, 1/1/3077:3080 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_119 IL_13730.12 | |
| IL_4U4O_114 | 1/1/3103:3107, 1/1/3127:3131 | UAA/GAN Not in a motif group | homologous IL_5TBW_120 IL_53523.5 | |
| IL_4U4O_115 | 1/1/3163:3166, 1/1/3284:3287 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4WF9_109 IL_85877.10 | |
| IL_4U4O_117 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A Not in a motif group | geometric IL_5TBW_123 IL_80007.16 | |
| IL_4U4O_118 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation Not in a motif group | homologous IL_5TBW_124 IL_56867.1 | |
| IL_4U4O_119 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U Not in a motif group | homologous IL_5TBW_125 IL_83039.11 | |
| IL_4U4O_120 | 1/1/3225:3229, 1/1/3258:3260 | No text annotation Not in a motif group | homologous IL_5TBW_126 IL_50789.1 | |
| IL_4U4O_121 | 1/1/3233:3238, 1/1/3249:3254 | No text annotation Not in a motif group | geometric IL_6O5F_001 IL_52729.1 | |
| IL_4U4O_122 | 1/1/3300:3303, 1/1/3311:3314 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_129 IL_85877.10 | |
| IL_4U4O_123 | 1/1/3318:3320, 1/1/3387:3388 | Single bulged U Not in a motif group | homologous IL_5TBW_130 IL_83039.11 | |
| IL_4U4O_124 | 1/1/3324:3325, 1/1/3381:3383 | Single bulged U Not in a motif group | homologous IL_5TBW_131 IL_21340.1 | |
| IL_4U4O_125 | 1/1/3328:3330, 1/1/3373:3378 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_132 IL_55456.1 | |
| IL_4U4O_126 | 1/1/3332:3337, 1/1/3367:3371 | No text annotation Not in a motif group | homologous IL_5TBW_133 IL_47002.1 | |
| IL_4U4O_127 | 1/1/3340:3342, 1/1/3363:3364 | Single bulged U Not in a motif group | homologous IL_5TBW_134 IL_83039.11 | |
| IL_4U4O_128 | 1/1/3342:3345, 1/1/3360:3363 | tWS-tSW Not in a motif group | geometric IL_5TBW_135 IL_09705.7 | |
| IL_4U4O_129 | 1/1/3349:3350, 1/1/3353:3356 | No text annotation Not in a motif group | ||
| IL_4U4O_130 | 1/2/24:27, 1/2/599:601 | No text annotation Not in a motif group | geometric IL_4V9K_064 IL_01312.13 | |
| IL_4U4O_131 | 1/2/35:37, 1/2/471:473 | UC cWW Not in a motif group | homologous IL_4V88_385 IL_01312.13 | |
| IL_4U4O_132 | 1/2/42:48, 1/2/431:433 | No text annotation Not in a motif group | homologous IL_4V88_387 IL_34626.4 | |
| IL_4U4O_133 | 1/2/50:52, 1/2/428:429 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_06437.11 | |
| IL_4U4O_134 | 1/2/58:63, 1/2/87:89 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_96451.1 | |
| IL_4U4O_135 | 1/2/64:70, 1/2/81:86 | No text annotation Not in a motif group | ||
| IL_4U4O_136 | 1/2/109:112, 1/2/302:305 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_85877.10 | |
| IL_4U4O_137 | 1/2/113:116, 1/2/300:301 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_13730.12 | |
| IL_4U4O_138 | 1/2/117:122, 1/2/295:299 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_76386.1 | |
| IL_4U4O_139 | 1/2/143:149, 1/2/165:172 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_92440.5 | |
| IL_4U4O_140 | 1/2/150:152, 1/2/162:164 | No text annotation Not in a motif group | geometric IL_6OL3_002 IL_01312.13 | |
| IL_4U4O_141 | 1/2/186:189, 1/2/196:199 | Double sheared Not in a motif group | homologous IL_4V88_396 IL_09705.7 | |
| IL_4U4O_142 | 1/2/204:206, 1/2/259:263 | Major groove platform with extra cWW Not in a motif group | homologous IL_4V88_397 IL_95485.6 | |
| IL_4U4O_143 | 1/2/206:208, 1/2/257:259 | No text annotation Not in a motif group | geometric IL_4V88_398 IL_01312.13 | |
| IL_4U4O_144 | 1/2/265:268, 1/2/287:289 | No text annotation Not in a motif group | geometric IL_4WF9_055 IL_01312.13 | |
| IL_4U4O_145 | 1/2/270:273, 1/2/283:285 | No text annotation Not in a motif group | homologous IL_4V88_400 IL_05922.1 | |
| IL_4U4O_146 | 1/2/274:276, 1/2/279:282 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 IL_01312.13 | |
| IL_4U4O_147 | 1/2/311:316, 1/2/348:355 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_29549.9 | |
| IL_4U4O_148 | 1/2/318:323, 1/2/345:346 | No text annotation Not in a motif group | homologous IL_4V88_403 IL_55658.1 | |
| IL_4U4O_150 | 1/2/389:391, 1/2/406:408 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_42589.6 | |
| IL_4U4O_151 | 1/2/411:414, 1/2/419:422 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4EYA_010 IL_85877.10 | |
| IL_4U4O_152 | 1/2/439:441, 1/2/463:464 | Single bulged U Not in a motif group | homologous IL_4V88_407 IL_83039.11 | |
| IL_4U4O_153 | 1/2/443:448, 1/2/458:461 | C-loop with extra cWW pair Not in a motif group | homologous IL_4V88_408 IL_51590.1 | |
| IL_4U4O_154 | 1/2/479:483, 1/2/504:509 | No text annotation Not in a motif group | ||
| IL_4U4O_158 | 1/2/616:622, 1/2/1104:1105 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_12418.1 | |
| IL_4U4O_159 | 1/2/624:626, 1/2/973:975 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_01312.13 | |
| IL_4U4O_160 | 1/2/627:631, 1/2/968:972 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_39521.5 | |
| IL_4U4O_169 | 1/2/865:866, 1/2/962:965 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V88_428 IL_70995.6 | |
| IL_4U4O_170 | 1/2/867:871, 1/2/956:961 | No text annotation Not in a motif group | ||
| IL_4U4O_171 | 1/2/871:874, 1/2/953:956 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_430 IL_85877.10 | |
| IL_4U4O_172 | 1/2/874:878, 1/2/950:953 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_431 IL_85877.10 | |
| IL_4U4O_173 | 1/2/884:889, 1/2/923:928 | No text annotation Not in a motif group | ||
| IL_4U4O_178 | 1/2/1040:1044, 1/2/1074:1078 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05867.1 | |
| IL_4U4O_179 | 1/2/1051:1053, 1/2/1066:1067 | Single bulged U Not in a motif group | homologous IL_4V88_439 IL_83039.11 | |
| IL_4U4O_183 | 1/2/1157:1161, 1/2/1616:1621 | No text annotation Not in a motif group | ||
| IL_4U4O_184 | 1/2/1173:1176, 1/2/1463:1466 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5EW4_002 IL_85877.10 | |
| IL_4U4O_185 | 1/2/1178:1179, 1/2/1459:1461 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_06437.11 | |
| IL_4U4O_214 | 1/3/15:16, 1/3/63:65 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_80007.16 | |
| IL_4U4O_215 | 1/3/21:27, 1/3/53:58 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_05523.1 | |
| IL_4U4O_216 | 1/3/28:29, 1/3/49:52 | Minor groove platform Not in a motif group | homologous IL_5TBW_374 IL_94431.4 | |
| IL_4U4O_217 | 1/3/29:30, 1/3/47:49 | Single stack bend Not in a motif group | geometric IL_5TBW_375 IL_04038.4 | |
| IL_4U4O_218 | 1/3/32:36, 1/3/41:45 | Symmetric double minor groove platform Not in a motif group | geometric IL_5TBW_376 IL_58103.5 | |
| IL_4U4O_219 | 1/3/72:80, 1/3/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.5 | |
| IL_4U4O_220 | 1/3/84:87, 1/3/94:96 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_01312.13 | |
| IL_4U4O_221 | 1/4/44:64, 1/4/96:100 | No text annotation Not in a motif group | homologous IL_5TBW_144 IL_23735.1 | |
| IL_4U4O_222 | 1/4/64:66, 1/4/93:96 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_145 IL_55456.1 | |
| IL_4U4O_223 | 1/4/68:69, 1/4/89:91 | Single bulged U Not in a motif group | geometric IL_5TBW_146 IL_83039.11 | |
| IL_4U4O_224 | 1/4/69:73, 1/4/78:89 | No text annotation Not in a motif group | geometric IL_5TBW_147 IL_39287.1 | |
| IL_4U4O_225 | 1/5/7:8, 1/8/150:152 | Single bulged C Not in a motif group |