4V4J Summary
- Structure Title
- 4V4J Summary
- Authors
- Release Date
- 2014-07-09
- Experimental technique
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
- Chains
-
- 6 RNA chains from Thermus thermophilus
- 48 other chains
- Compounds
- E-site tRNA, MRNA, 50S ribosomal protein L1, 50S ribosomal protein L2, 50S ribosomal protein L3, 50S ribosomal protein L4, 50S ribosomal protein L5, 50S ribosomal protein L6, 50S ribosomal protein L9, 50S ribosomal protein L13, 50S ribosomal protein L14, 50S ribosomal protein L15, 50S ribosomal protein L16, 50S ribosomal protein L17, 50S ribosomal protein L18, 50S ribosomal protein L19, 50S ribosomal protein L20, 50S ribosomal protein L21, 50S ribosomal protein L22, 50S ribosomal protein L23, 50S ribosomal protein L24, 50S ribosomal protein L25, 50S ribosomal protein L27, LSU ribosomal protein L28P, 50S ribosomal protein L29, LSU ribosomal protein L30P, 50S ribosomal protein L32, 50S ribosomal protein L34, 50S ribosomal protein L35, 50S ribosomal protein L36, 30S ribosomal protein S2, 30S ribosomal protein S3, 30S ribosomal protein S4, 30S ribosomal protein S5, 30S ribosomal protein S6, 30S ribosomal protein S7, 30S ribosomal protein S8, 30S ribosomal protein S9, 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, 30S ribosomal protein S13, 30S ribosomal protein S14 type Z, 30S ribosomal protein S15, 30S ribosomal protein S16, 30S ribosomal protein S17, 30S ribosomal protein S18, 30S ribosomal protein S19, 30S ribosomal protein S20, 30S ribosomal protein Thx, 23S LARGE SUBUNIT RIBOSOMAL RNA, 5S LARGE SUBUNIT RIBOSOMAL RNA, 16S RNA, P-site tRNAfMET
Pairwise Interactions
Interactions annotated by FR3D:- 1,788 base-pairs
- 4,464 base-stacking
- 1,682 base-phosphate
- 264 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 4V4J contains:- 169 internal loops from 0 motif groups
- 111 hairpin loops from 0 motif groups
- 26 three-way junctions
3D Redundancy
4V4J has chains which belong to the following equivalence classes in the current representative set:- NR_20.0_20721.9 (1)
- NR_20.0_65795.70 (1)
- NR_20.0_97519.63 (1)
- NR_20.0_42622.63 (1)
- NR_20.0_18471.1 (1) rep
- NR_4.0_20721.9 (1)
- NR_4.0_65795.70 (1)
- NR_4.0_97519.63 (1)
- NR_4.0_42622.63 (1)
- NR_4.0_18471.1 (1) rep
- NR_all_20721.9 (1)
- NR_all_65795.70 (1)
- NR_all_97519.63 (1)
- NR_all_42622.63 (1)
- NR_all_18471.1 (1) rep