4V5G Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/AA/12:22 | NA | NA | ||
| 1/AA/158:163 | NA | NA | ||
| 1/AA/189B:189I | NA | NA | ||
| 1/AA/200:217 | NA | NA | ||
| 1/AA/259:267 | NA | NA | ||
| 1/AA/296:301 | NA | NA | ||
| 1/AA/320:333 | NA | NA | ||
| 1/AA/379:384 | NA | NA | ||
| 1/AA/418:425 | NA | NA | ||
| 1/AA/458:473 | NA | NA | ||
| 1/AA/522:527 | NA | NA | ||
| 1/AA/617:623 | NA | NA | ||
| 1/AA/689:698 | NA | NA | ||
| 1/AA/726:731 | NA | NA | ||
| 1/AA/786:796 | NA | NA | ||
| 1/AA/838:848 | NA | NA | ||
| 1/AA/862:867 | NA | NA | ||
| 1/AA/897:902 | NA | NA | ||
| 1/AA/963:972 | NA | NA | ||
| 1/AA/1008:1021 | NA | NA | ||
| 1/AA/1076:1081 | NA | NA | ||
| 1/AA/1089:1096 | NA | NA | ||
| 1/AA/1128:1143 | NA | NA | ||
| 1/AA/1163:1173 | NA | NA | ||
| 1/AA/1265:1270 | NA | NA | ||
| 1/AA/1314:1323 | NA | NA | ||
| 1/AA/1356:1366 | NA | NA | ||
| 1/AA/1444:1458 | NA | NA | ||
| 1/AA/1515:1520 | NA | NA | ||
| 1/AV/30:40 | NA | NA | ||
| 1/AW/30:40 | NA | NA | ||
| 1/AW/49:65 | NA | NA | ||
| 1/AY/12:23 | NA | NA | ||
| 1/AY/31:39 | NA | NA | ||
| 1/AY/51:63 | NA | NA | ||
| 1/BA/58:69 | NA | NA | ||
| 1/BA/87:95 | NA | NA | ||
| 1/BA/123:128 | NA | NA | ||
| 1/BA/139:142A | homologous HL_7RQB_004 | NA HL_86069.1* | ||
| 1/BA/188:208 | NA | NA | ||
| 1/BA/224:231 | NA | NA | ||
| 1/BA/246:252 | homologous HL_7RQB_008 | NA HL_67216.5* | ||
| 1/BA/271I:271O | NA | NA | ||
| 1/BA/303:314 | NA | NA | ||
| 1/BA/319:323 | homologous HL_7RQB_011 | NA HL_98557.5* | ||
| 1/BA/327:335 | homologous HL_7RQB_012 | NA HL_08002.6* | ||
| 1/BA/382:392 | homologous HL_7RQB_013 | NA HL_91503.3* | ||
| 1/BA/410:417 | homologous HL_7RQB_014 | NA HL_32512.8* | ||
| 1/BA/462:467 | homologous HL_7RQB_015 | NA HL_43074.18* | ||
| 1/BA/487:493 | homologous HL_7RQB_016 | NA HL_43074.18* | ||
| 1/BA/564:577 | NA | NA | ||
| 1/BA/612:615 | homologous HL_7RQB_019 | NA HL_49196.4* | ||
| 1/BA/629:634 | homologous HL_7RQB_020 | NA HL_43074.18* | ||
| 1/BA/640:648 | geometric HL_5J7L_012 | NA HL_42733.4* | ||
| 1/BA/712:719 | NA | NA | ||
| 1/BA/744:753 | homologous HL_7RQB_023 | NA HL_39334.5* | ||
| 1/BA/779:785 | Other HL geometric HL_2NUE_001 | NA HL_79299.11* | ||
| 1/BA/826:831 | homologous HL_7RQB_025 | NA HL_15942.5* | ||
| 1/BA/879:898 | NA | NA | ||
| 1/BA/955:962 | homologous HL_7RQB_027 | NA HL_43074.18* | ||
| 1/BA/1169:1180 | NA | NA | ||
| 1/BA/1222:1227 | homologous HL_7RQB_032 | NA HL_43074.18* | ||
| 1/BA/1281:1289 | homologous HL_7RQB_033 | NA HL_33239.17* | ||
| 1/BA/1324:1330 | geometric HL_4WF9_033 | NA HL_86880.5* | ||
| 1/BA/1363:1368 | homologous HL_7RQB_035 | NA HL_43074.18* | ||
| 1/BA/1388:1399 | NA | NA | ||
| 1/BA/1450:1462 | NA | NA | ||
| 1/BA/1489:1500 | NA | NA | ||
| 1/BA/1565:1568 | homologous HL_7RQB_039 | NA HL_69353.7* | ||
| 1/BA/1612:1619 | homologous HL_7RQB_040 | NA HL_66171.3* | ||
| 1/BA/1631:1635 | homologous HL_7RQB_041 | NA HL_86880.5* | ||
| 1/BA/1691:1696 | UNCG geometric HL_4LFB_011 | NA HL_79299.11* | ||
| 1/BA/1720:1742 | NA | NA | ||
| 1/BA/1752:1756 | homologous HL_7RQB_044 | NA HL_79272.3* | ||
| 1/BA/1777:1787 | homologous HL_7RQB_045 | NA HL_43613.4* | ||
| 1/BA/1806:1811 | homologous HL_7RQB_046 | NA HL_43074.18* | ||
| 1/BA/1864:1878 | homologous HL_7RQB_047 | NA HL_43074.18* | ||
| 1/BA/1910:1920 | geometric HL_5TBW_049 | NA HL_98248.1* | ||
| 1/BA/1949:1957 | homologous HL_7RQB_049 | NA HL_53760.4* | ||
| 1/BA/2027:2036 | homologous HL_7RQB_050 | NA HL_90642.5* | ||
| 1/BA/2143:2148 | NA | NA | ||
| 1/BA/2205:2219 | geometric HL_5TBW_004 | NA HL_36982.3* | ||
| 1/BA/2248:2256 | homologous HL_7RQB_053 | NA | ||
| 1/BA/2264:2276 | homologous HL_7RQB_054 | NA HL_19870.5* | ||
| 1/BA/2303:2313 | NA | NA | ||
| 1/BA/2324:2331 | homologous HL_7RQB_056 | NA HL_46142.8* | ||
| 1/BA/2355:2362 | homologous HL_7RQB_057 | NA HL_93727.5* | ||
| 1/BA/2373:2380 | geometric HL_5TBW_006 | NA HL_98557.5* | ||
| 1/BA/2404:2413 | NA | NA | ||
| 1/BA/2471:2479 | homologous HL_7RQB_060 | NA HL_36421.5* | ||
| 1/BA/2528:2535 | homologous HL_7RQB_061 | NA HL_92681.5* | ||
| 1/BA/2551:2557 | geometric HL_4WF9_058 | NA HL_26055.6* | ||
| 1/BA/2594:2599 | homologous HL_7RQB_063 | NA HL_43074.18* | ||
| 1/BA/2658:2663 | GNRA geometric HL_5F9R_003 | NA HL_43074.18* | ||
| 1/BA/2701:2706 | homologous HL_7RQB_065 | NA HL_31583.1* | ||
| 1/BA/2745:2759 | homologous HL_7RQB_066 | NA HL_56677.5* | ||
| 1/BA/2819:2827 | homologous HL_7RQB_068 | NA HL_05018.6* | ||
| 1/BA/2856:2861 | homologous HL_7RQB_069 | NA HL_43074.18* | ||
| 1/BB/38:44 | NA | NA | ||
| 1/BB/86:91 | NA | NA | ||
| 1/CA/12:22 | NA | NA | ||
| 1/CA/158:163 | NA | NA | ||
| 1/CA/189B:189I | NA | NA | ||
| 1/CA/200:217 | NA | NA | ||
| 1/CA/259:267 | NA | NA | ||
| 1/CA/296:301 | NA | NA | ||
| 1/CA/320:333 | NA | NA | ||
| 1/CA/342:347 | NA | NA | ||
| 1/CA/377:386 | NA | NA | ||
| 1/CA/418:425 | NA | NA | ||
| 1/CA/458:473 | NA | NA | ||
| 1/CA/522:527 | NA | NA | ||
| 1/CA/617:623 | NA | NA | ||
| 1/CA/689:698 | NA | NA | ||
| 1/CA/726:731 | NA | NA | ||
| 1/CA/786:796 | NA | NA | ||
| 1/CA/838:848 | NA | NA | ||
| 1/CA/862:867 | NA | NA | ||
| 1/CA/897:902 | NA | NA | ||
| 1/CA/963:972 | NA | NA | ||
| 1/CA/1008:1021 | NA | NA | ||
| 1/CA/1076:1081 | NA | NA | ||
| 1/CA/1089:1096 | NA | NA | ||
| 1/CA/1128:1143 | NA | NA | ||
| 1/CA/1163:1173 | NA | NA | ||
| 1/CA/1265:1270 | NA | NA | ||
| 1/CA/1314:1323 | NA | NA | ||
| 1/CA/1356:1366 | NA | NA | ||
| 1/CA/1444:1458 | NA | NA | ||
| 1/CA/1515:1520 | NA | NA | ||
| 1/CV/30:40 | NA | NA | ||
| 1/CW/30:40 | NA | NA | ||
| 1/CW/49:65 | NA | NA | ||
| 1/CY/12:23 | NA | NA | ||
| 1/CY/31:39 | NA | NA | ||
| 1/CY/51:63 | NA | NA | ||
| 1/DA/58:69 | NA | NA | ||
| 1/DA/87:95 | NA | NA | ||
| 1/DA/123:128 | NA | NA | ||
| 1/DA/139:142A | homologous HL_7RQB_004 | NA HL_86069.1* | ||
| 1/DA/154A:171 | geometric HL_4O26_001 | NA HL_61984.1* | ||
| 1/DA/188:208 | NA | NA | ||
| 1/DA/224:231 | NA | NA | ||
| 1/DA/246:252 | homologous HL_7RQB_008 | NA HL_67216.5* | ||
| 1/DA/271I:271O | NA | NA | ||
| 1/DA/303:314 | NA | NA | ||
| 1/DA/319:323 | homologous HL_7RQB_011 | NA HL_98557.5* | ||
| 1/DA/327:335 | homologous HL_7RQB_012 | NA HL_08002.6* | ||
| 1/DA/382:392 | homologous HL_7RQB_013 | NA HL_91503.3* | ||
| 1/DA/410:417 | homologous HL_7RQB_014 | NA HL_32512.8* | ||
| 1/DA/462:467 | homologous HL_7RQB_015 | NA HL_43074.18* | ||
| 1/DA/487:493 | homologous HL_7RQB_016 | NA HL_43074.18* | ||
| 1/DA/543:549 | Other HL geometric HL_5J7L_016 | NA HL_43074.18* | ||
| 1/DA/564:577 | NA | NA | ||
| 1/DA/612:615 | homologous HL_7RQB_019 | NA HL_49196.4* | ||
| 1/DA/629:634 | homologous HL_7RQB_020 | NA HL_43074.18* | ||
| 1/DA/640:648 | geometric HL_5J7L_012 | NA HL_42733.4* | ||
| 1/DA/712:719 | NA | NA | ||
| 1/DA/744:753 | homologous HL_7RQB_023 | NA HL_39334.5* | ||
| 1/DA/779:785 | Other HL geometric HL_2NUE_001 | NA HL_79299.11* | ||
| 1/DA/826:831 | homologous HL_7RQB_025 | NA HL_15942.5* | ||
| 1/DA/880:897 | NA | NA | ||
| 1/DA/955:962 | homologous HL_7RQB_027 | NA HL_43074.18* | ||
| 1/DA/1169:1180 | NA | NA | ||
| 1/DA/1222:1227 | homologous HL_7RQB_032 | NA HL_43074.18* | ||
| 1/DA/1281:1289 | homologous HL_7RQB_033 | NA HL_33239.17* | ||
| 1/DA/1324:1330 | homologous HL_7RQB_034 | NA HL_86880.5* | ||
| 1/DA/1363:1368 | homologous HL_7RQB_035 | NA HL_43074.18* | ||
| 1/DA/1388:1399 | NA | NA | ||
| 1/DA/1450:1462 | NA | NA | ||
| 1/DA/1489:1500 | NA | NA | ||
| 1/DA/1532:1537 | Other HL geometric HL_2CZJ_007 | NA HL_79299.11* | ||
| 1/DA/1565:1568 | homologous HL_7RQB_039 | NA HL_69353.7* | ||
| 1/DA/1612:1619 | homologous HL_7RQB_040 | NA HL_66171.3* | ||
| 1/DA/1631:1635 | homologous HL_7RQB_041 | NA HL_86880.5* | ||
| 1/DA/1691:1696 | homologous HL_7RQB_042 | NA HL_79299.11* | ||
| 1/DA/1720:1742 | NA | NA | ||
| 1/DA/1752:1756 | homologous HL_7RQB_044 | NA HL_79272.3* | ||
| 1/DA/1777:1787 | homologous HL_7RQB_045 | NA HL_43613.4* | ||
| 1/DA/1806:1811 | homologous HL_7RQB_046 | NA HL_43074.18* | ||
| 1/DA/1864:1878 | homologous HL_7RQB_047 | NA HL_43074.18* | ||
| 1/DA/1910:1920 | geometric HL_5TBW_049 | NA HL_98248.1* | ||
| 1/DA/1949:1957 | homologous HL_7RQB_049 | NA HL_53760.4* | ||
| 1/DA/2027:2036 | homologous HL_7RQB_050 | NA HL_90642.5* | ||
| 1/DA/2143:2148 | NA | NA | ||
| 1/DA/2205:2219 | geometric HL_5TBW_004 | NA HL_36982.3* | ||
| 1/DA/2248:2256 | homologous HL_7RQB_053 | NA | ||
| 1/DA/2264:2276 | homologous HL_7RQB_054 | NA HL_19870.5* | ||
| 1/DA/2303:2313 | NA | NA | ||
| 1/DA/2324:2331 | homologous HL_7RQB_056 | NA HL_46142.8* | ||
| 1/DA/2355:2362 | homologous HL_7RQB_057 | NA HL_93727.5* | ||
| 1/DA/2373:2380 | geometric HL_5TBW_006 | NA HL_98557.5* | ||
| 1/DA/2404:2413 | NA | NA | ||
| 1/DA/2471:2479 | homologous HL_7RQB_060 | NA HL_36421.5* | ||
| 1/DA/2528:2535 | homologous HL_7RQB_061 | NA HL_92681.5* | ||
| 1/DA/2551:2557 | geometric HL_4WF9_058 | NA HL_26055.6* | ||
| 1/DA/2594:2599 | homologous HL_7RQB_063 | NA HL_43074.18* | ||
| 1/DA/2658:2663 | homologous HL_7RQB_064 | NA HL_43074.18* | ||
| 1/DA/2701:2706 | homologous HL_7RQB_065 | NA HL_31583.1* | ||
| 1/DA/2745:2759 | homologous HL_7RQB_066 | NA HL_56677.5* | ||
| 1/DA/2819:2827 | homologous HL_7RQB_068 | NA HL_05018.6* | ||
| 1/DA/2856:2861 | homologous HL_7RQB_069 | NA HL_43074.18* | ||
| 1/DB/38:44 | NA | NA | ||
| 1/DB/86:91 | NA | NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V5G_002 | NA | ||
| HL_4V5G_009 | NA | ||
| HL_4V5G_032 | NA | ||
| HL_4V5G_034 | NA | ||
| HL_4V5G_035 | NA | ||
| HL_4V5G_045 | geometric HL_4O26_001 | ||
| HL_4V5G_057 | Other HL geometric HL_5J7L_016 | ||
| HL_4V5G_062 | NA | ||
| HL_4V5G_069 | NA | ||
| HL_4V5G_078 | Other HL geometric HL_2CZJ_007 | ||
| HL_4V5G_107 | NA | ||
| HL_4V5G_113 | NA | ||
| HL_4V5G_143 | NA | ||
| HL_4V5G_145 | NA | ||
| HL_4V5G_146 | NA | ||
| HL_4V5G_173 | NA | ||
| HL_4V5G_180 | NA | ||
| HL_4V5G_218 | NA |
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/AA/30:32, 1/AA/552:553 | NA | NA | ||
| 1/AA/43:45, 1/AA/396:399 | NA | NA | ||
| 1/AA/47:52, 1/AA/359:361 | NA | NA | ||
| 1/AA/53:58, 1/AA/354:358 | NA | NA | ||
| 1/AA/63:66, 1/AA/103:104 | NA | NA | ||
| 1/AA/67:69, 1/AA/100:102 | NA | NA | ||
| 1/AA/129:131, 1/AA/231:232 | NA | NA | ||
| 1/AA/132:136, 1/AA/227:230 | NA | NA | ||
| 1/AA/148:153, 1/AA/168:174 | NA | NA | ||
| 1/AA/186:188, 1/AA/189L:191 | NA | NA | ||
| 1/AA/242:247, 1/AA/277:284 | NA | NA | ||
| 1/AA/249:253, 1/AA/273:275 | NA | NA | ||
| 1/AA/292:293, 1/AA/304:308 | NA | NA | ||
| 1/AA/367:369, 1/AA/392:393 | NA | NA | ||
| 1/AA/370:375, 1/AA/389:391 | NA | NA | ||
| 1/AA/375:377, 1/AA/386:389 | NA | NA | ||
| 1/AA/408:416, 1/AA/427:434 | NA | NA | ||
| 1/AA/504:511, 1/AA/540:541 | NA | NA | ||
| 1/AA/515:521, 1/AA/528:536 | NA | NA | ||
| 1/AA/580:584, 1/AA/757:761 | NA | NA | ||
| 1/AA/594:596, 1/AA/644:645 | NA | NA | ||
| 1/AA/597:598, 1/AA/640:643 | NA | NA | ||
| 1/AA/605:612, 1/AA/628:633 | NA | NA | ||
| 1/AA/654:655, 1/AA/751:754 | NA | NA | ||
| 1/AA/657:658, 1/AA/747:749 | NA | NA | ||
| 1/AA/662:666, 1/AA/740:743 | NA | NA | ||
| 1/AA/673:678, 1/AA/712:717 | NA | NA | ||
| 1/AA/683:688, 1/AA/699:707 | NA | NA | ||
| 1/AA/774:778, 1/AA/804:805 | NA | NA | ||
| 1/AA/779:783, 1/AA/799:803 | NA | NA | ||
| 1/AA/887:894, 1/AA/905:910 | NA | NA | ||
| 1/AA/921:923, 1/AA/1393:1396 | NA | NA | ||
| 1/AA/925:927, 1/AA/1390:1391 | NA | NA | ||
| 1/AA/933:936, 1/AA/1379:1384 | NA | NA | ||
| 1/AA/952:954, 1/AA/1226:1229 | NA | NA | ||
| 1/AA/1048:1050, 1/AA/1208:1209 | NA | NA | ||
| 1/AA/1052:1056, 1/AA/1204:1206 | NA | NA | ||
| 1/AA/1057:1058, 1/AA/1199:1203 | NA | NA | ||
| 1/AA/1060:1061, 1/AA/1195:1197 | NA | NA | ||
| 1/AA/1061:1063, 1/AA/1193:1195 | NA | NA | ||
| 1/AA/1121:1128, 1/AA/1143:1152 | NA | NA | ||
| 1/AA/1247:1253, 1/AA/1284:1290 | NA | NA | ||
| 1/AA/1255:1259, 1/AA/1276:1282 | NA | NA | ||
| 1/AA/1259:1262, 1/AA/1273:1276 | NA | NA | ||
| 1/AA/1303:1309, 1/AA/1328:1334 | NA | NA | ||
| 1/AA/1399:1401, 1/AA/1501:1504 | NA | NA | ||
| 1/AA/1401:1404, 1/AA/1497:1501 | NA | NA | ||
| 1/AA/1404:1407, 1/AA/1494:1497 | NA | NA | ||
| 1/AA/1407:1409, 1/AA/1491:1494 | NA | NA | ||
| 1/AA/1412:1414, 1/AA/1486:1488 | NA | NA | ||
| 1/AA/1416:1420, 1/AA/1480:1484 | NA | NA | ||
| 1/AA/1431:1435, 1/AA/1466:1469 | NA | NA | ||
| 1/AA/1435:1438, 1/AA/1463:1466 | NA | NA | ||
| 1/AA/1440:1443, 1/AA/1459:1461 | NA | NA | ||
| 1/BA/24:30, 1/BA/510:516 | Triple sheared with non-canonical cWW geometric IL_7RQB_001 | NA IL_66414.5* | ||
| 1/BA/36:37, 1/BA/442:444 | Single bulged A homologous IL_7RQB_002 | NA IL_80007.16* | ||
| 1/BA/41:43, 1/BA/434:437 | Minor groove platform with extra cWW geometric IL_4WF9_003 | NA IL_87332.1* | ||
| 1/BA/81:85, 1/BA/97:105 | Kink-turn geometric IL_1T0K_001 | NA IL_29549.9* | ||
| 1/BA/183:184, 1/BA/212:214 | Single stack bend homologous IL_7RQB_005 | NA IL_04038.4* | ||
| 1/BA/239:245, 1/BA/253:258 | 7x6 Sarcin-Ricin; G-bulge homologous IL_7RQB_007 | NA IL_35110.5* | ||
| 1/BA/272D:272G, 1/BA/363C:364 | Tandem non-canonical cWW pairs geometric IL_4WF9_109 | NA IL_85877.10* | ||
| 1/BA/280:284, 1/BA/357:360 | tSH-tHW homologous IL_7RQB_011 | NA IL_08757.3* | ||
| 1/BA/287:290, 1/BA/350:354 | NA | NA | ||
| 1/BA/292:295, 1/BA/343:348 | NA | NA | ||
| 1/BA/481:484, 1/BA/496:509 | NA | NA | ||
| 1/BA/672:674, 1/BA/806:808 | geometric IL_4LFB_010 | NA IL_01312.13* | ||
| 1/BA/674:678, 1/BA/799:806 | homologous IL_7RQB_018 | NA IL_17470.5* | ||
| 1/BA/697:698, 1/BA/763:765 | Single bulged A homologous IL_7RQB_019 | NA IL_80007.16* | ||
| 1/BA/702:703, 1/BA/728:730 | Single bulged G homologous IL_7RQB_020 | NA IL_59137.10* | ||
| 1/BA/703:707, 1/BA/724:728 | Triple sheared geometric IL_7RQB_021 | NA IL_56467.6* | ||
| 1/BA/738:741, 1/BA/756:758 | Major groove platform with extra cWW homologous IL_7RQB_022 | NA IL_95485.6* | ||
| 1/BA/775:777, 1/BA/787:791 | Multiple bulged bases geometric IL_5J7L_265 | NA IL_90991.5* | ||
| 1/BA/837:838, 1/BA/940:942 | Single stack bend homologous IL_7RQB_024 | NA IL_04038.4* | ||
| 1/BA/844:846, 1/BA/931:934 | Intercalated cWW homologous IL_7RQB_025 | NA IL_01312.13* | ||
| 1/BA/846:850, 1/BA/927:931 | geometric IL_7RQB_026 | NA IL_94165.1* | ||
| 1/BA/857:862, 1/BA/915:920 | 5x5 Sarcin-Ricin with intercalated A; G-bulge geometric IL_7A0S_027 | NA IL_89193.1* | ||
| 1/BA/862:863, 1/BA/913:915 | Minor groove platform geometric IL_4V9F_034 | NA IL_06437.11* | ||
| 1/BA/864:868, 1/BA/909:912 | C-loop homologous IL_7RQB_029 | NA IL_63596.4* | ||
| 1/BA/869:872, 1/BA/905:908 | Tandem non-canonical cWW pairs geometric IL_4EYA_010 | NA IL_85877.10* | ||
| 1/BA/875:879, 1/BA/898:902 | Triple sheared geometric IL_4WFL_001 | NA IL_56467.6* | ||
| 1/BA/952:954, 1/BA/963:965 | homologous IL_7RQB_034 | NA IL_01312.13* | ||
| 1/BA/993:996, 1/BA/1159:1161 | Isolated non-canonical cWW with bulges geometric IL_5ML7_010 | NA IL_01312.13* | ||
| 1/BA/997:1002, 1/BA/1153:1158 | UAA/GAN with extra cWW geometric IL_7RQB_107 | NA IL_49767.4* | ||
| 1/BA/1004:1011, 1/BA/1150:1151 | SSU/LSU pseudoknot geometric IL_5J7L_278 | NA IL_15861.6* | ||
| 1/BA/1011:1013, 1/BA/1149:1150 | Single bulged U homologous IL_7RQB_038 | NA IL_83039.11* | ||
| 1/BA/1018:1024, 1/BA/1140:1144 | geometric IL_4WF9_039 | NA IL_57188.3* | ||
| 1/BA/1024:1030, 1/BA/1124:1140 | homologous IL_7RQB_040 | NA IL_55786.1* | ||
| 1/BA/1031:1034, 1/BA/1121:1123 | Isolated non-canonical cWW with bulges homologous IL_7RQB_041 | NA IL_55456.1* | ||
| 1/BA/1038:1041, 1/BA/1115:1117 | NA | NA | ||
| 1/BA/1165:1167, 1/BA/1183:1184 | NA | NA | ||
| 1/BA/1167:1168, 1/BA/1181:1183 | NA | NA | ||
| 1/BA/1196:1198, 1/BA/1247:1250 | Isolated cWS basepair homologous IL_7RQB_045 | NA IL_67621.5* | ||
| 1/BA/1202:1206, 1/BA/1240:1243 | homologous IL_7RQB_046 | NA IL_68574.2* | ||
| 1/BA/1208:1215, 1/BA/1234:1238 | Kink-turn homologous IL_7RQB_047 | NA IL_29549.9* | ||
| 1/BA/1219:1221A, 1/BA/1228:1230 | geometric IL_1XJR_003 | NA IL_01312.13* | ||
| 1/BA/1262:1269, 1/BA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge homologous IL_7RQB_049 | NA IL_04346.5* | ||
| 1/BA/1319:1324, 1/BA/1330:1333 | NA | NA | ||
| 1/BA/1351:1355, 1/BA/1376:1380 | NA | NA | ||
| 1/BA/1357:1361, 1/BA/1370:1374 | tSH-tHW-tHS homologous IL_7RQB_053 | NA IL_39521.5* | ||
| 1/BA/1414:1417, 1/BA/1581:1588 | NA | NA | ||
| 1/BA/1417:1421, 1/BA/1577:1581 | UAA/GAN homologous IL_7RQB_055 | NA IL_53523.5* | ||
| 1/BA/1433:1435, 1/BA/1557:1560 | Isolated tWW turn homologous IL_7RQB_056 | NA IL_54997.5* | ||
| 1/BA/1437:1440, 1/BA/1551:1555 | NA | NA | ||
| 1/BA/1448:1450, 1/BA/1462:1463 | Single stack bend homologous IL_7RQB_058 | NA IL_31836.1* | ||
| 1/BA/1468:1473, 1/BA/1518:1524 | Triple sheared related geometric IL_4V9F_018 | NA IL_64879.1* | ||
| 1/BA/1481:1482, 1/BA/1506:1510 | homologous IL_7RQB_061 | NA IL_46464.1* | ||
| 1/BA/1526:1530, 1/BA/1539:1546 | NA | NA | ||
| 1/BA/1650:1656, 1/BA/2004:2007 | NA | NA | ||
| 1/BA/1663:1665, 1/BA/1995:1997 | Isolated tWW turn homologous IL_7RQB_065 | NA IL_54997.5* | ||
| 1/BA/1666:1669, 1/BA/1993:1994 | Major groove platform; stack outside cWW geometric IL_7RQB_066 | NA IL_80663.10* | ||
| 1/BA/1669:1674, 1/BA/1990:1993 | Intercalated tWH homologous IL_7RQB_067 | NA IL_01312.13* | ||
| 1/BA/1686:1691, 1/BA/1696:1702 | tSH-tSH-tHH-tHS homologous IL_7RQB_068 | NA IL_66584.5* | ||
| 1/BA/1770:1771, 1/BA/1980:1982 | Single bulged A homologous IL_7RQB_069 | NA IL_80007.16* | ||
| 1/BA/1798:1804, 1/BA/1813:1821 | Kink-turn related homologous IL_7RQB_070 | NA IL_17069.3* | ||
| 1/BA/1837:1840, 1/BA/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket homologous IL_7RQB_071 | NA IL_31836.1* | ||
| 1/BA/1841:1842, 1/BA/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket geometric IL_5J7L_315 | NA IL_13730.12* | ||
| 1/BA/1846:1849, 1/BA/1893:1894 | Minor groove platform homologous IL_7RQB_073 | NA IL_06437.11* | ||
| 1/BA/1851:1855, 1/BA/1887:1891 | UAA/GAN with extra pair homologous IL_7RQB_074 | NA IL_34907.2* | ||
| 1/BA/1856:1860, 1/BA/1882:1886 | NA | NA | ||
| 1/BA/1933:1934, 1/BA/1964:1967 | Multiple bulged bases homologous IL_7RQB_076 | NA IL_69632.1* | ||
| 1/BA/1934:1945, 1/BA/1961:1964 | geometric IL_4WF9_077 | NA IL_70285.1* | ||
| 1/BA/2050:2052, 1/BA/2617:2618 | Major groove platform homologous IL_7RQB_078 | NA IL_80663.10* | ||
| 1/BA/2053:2057, 1/BA/2611:2616 | NA | NA | ||
| 1/BA/2067:2069, 1/BA/2442:2443 | Single bulged U homologous IL_7RQB_080 | NA IL_83039.11* | ||
| 1/BA/2070:2071, 1/BA/2438:2441 | NA | NA | ||
| 1/BA/2081:2083, 1/BA/2236:2239 | Isolated tHS basepair with bulges homologous IL_7RQB_082 | NA IL_38958.6* | ||
| 1/BA/2085:2087, 1/BA/2232:2234 | homologous IL_7RQB_083 | NA IL_01312.13* | ||
| 1/BA/2101:2103, 1/BA/2187:2188 | Single stack bend geometric IL_7RQB_005 | NA IL_04038.4* | ||
| 1/BA/2103:2105, 1/BA/2184:2187 | NA | NA | ||
| 1/BA/2108:2122, 1/BA/2176:2181 | NA | NA | ||
| 1/BA/2122:2123, 1/BA/2174:2176 | NA | NA | ||
| 1/BA/2123:2127, 1/BA/2161:2174 | NA | NA | ||
| 1/BA/2129:2136, 1/BA/2155:2159 | homologous IL_7RQB_087 | NA | ||
| 1/BA/2297:2299, 1/BA/2317:2321 | Isolated tHS basepair with bulges geometric IL_7RQB_088 | NA IL_38958.6* | ||
| 1/BA/2350:2353, 1/BA/2364:2367 | Double sheared homologous IL_7RQB_089 | NA IL_09705.7* | ||
| 1/BA/2401:2403, 1/BA/2414:2415 | NA | NA | ||
| 1/BA/2453:2454, 1/BA/2498:2500 | Single stack bend homologous IL_7RQB_091 | NA IL_04038.4* | ||
| 1/BA/2454:2455, 1/BA/2496:2498 | Major groove platform geometric IL_1S03_004 | NA IL_80663.10* | ||
| 1/BA/2456:2459, 1/BA/2493:2495 | Major groove platform with extra pair homologous IL_7RQB_093 | NA IL_87630.5* | ||
| 1/BA/2459:2461, 1/BA/2489:2493 | Major groove minor groove platform with extra cWW geometric IL_7RQB_094 | NA IL_96042.4* | ||
| 1/BA/2466:2470, 1/BA/2480:2484 | Triple sheared homologous IL_7RQB_095 | NA IL_56467.6* | ||
| 1/BA/2507:2508, 1/BA/2580:2582 | Major groove platform homologous IL_7RQB_096 | NA IL_02060.4* | ||
| 1/BA/2510:2512, 1/BA/2574:2578 | Isolated non-canonical cWW with bulges homologous IL_7RQB_097 | NA IL_01312.13* | ||
| 1/BA/2512:2513, 1/BA/2571:2574 | geometric IL_5J7L_341 | NA IL_44093.1* | ||
| 1/BA/2522:2523, 1/BA/2540:2543 | Minor groove platform with intercalation homologous IL_7RQB_099 | NA IL_95601.1* | ||
| 1/BA/2591:2592, 1/BA/2601:2603 | Single bulged A homologous IL_7RQB_101 | NA IL_80007.16* | ||
| 1/BA/2636:2640, 1/BA/2774:2782 | NA | NA | ||
| 1/BA/2652:2658, 1/BA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge homologous IL_7RQB_103 | NA IL_35110.5* | ||
| 1/BA/2680:2684, 1/BA/2725:2727 | C-loop homologous IL_7RQB_104 | NA IL_63596.4* | ||
| 1/BA/2687:2691, 1/BA/2718:2722 | homologous IL_7RQB_105 | NA IL_08296.3* | ||
| 1/BA/2695:2696, 1/BA/2711:2714 | Multiple bulged bases homologous IL_7RQB_106 | NA IL_77034.1* | ||
| 1/BA/2737:2742, 1/BA/2762:2767 | UAA/GAN with extra cWW geometric IL_5J7L_350 | NA IL_49767.4* | ||
| 1/BA/2837:2840, 1/BA/2877:2881 | NA | NA | ||
| 1/BA/2843:2846, 1/BA/2870:2874 | homologous IL_7RQB_109 | NA IL_58764.1* | ||
| 1/BA/2847:2852, 1/BA/2865:2869 | homologous IL_7RQB_110 | NA IL_83162.3* | ||
| 1/BB/20:22, 1/BB/61:63 | NA | NA | ||
| 1/BB/23:28, 1/BB/56:60 | NA | NA | ||
| 1/BB/30:32, 1/BB/50:54 | NA | NA | ||
| 1/BB/34:38, 1/BB/44:48 | NA | NA | ||
| 1/BB/70:79, 1/BB/98:107 | NA | NA | ||
| 1/CA/30:32, 1/CA/552:553 | NA | NA | ||
| 1/CA/43:45, 1/CA/396:399 | NA | NA | ||
| 1/CA/47:52, 1/CA/359:361 | NA | NA | ||
| 1/CA/53:58, 1/CA/354:358 | NA | NA | ||
| 1/CA/63:66, 1/CA/103:104 | NA | NA | ||
| 1/CA/67:69, 1/CA/100:102 | NA | NA | ||
| 1/CA/129:131, 1/CA/231:232 | NA | NA | ||
| 1/CA/132:136, 1/CA/227:230 | NA | NA | ||
| 1/CA/148:153, 1/CA/168:174 | NA | NA | ||
| 1/CA/186:188, 1/CA/189L:191 | NA | NA | ||
| 1/CA/242:247, 1/CA/277:284 | NA | NA | ||
| 1/CA/249:253, 1/CA/273:275 | NA | NA | ||
| 1/CA/292:293, 1/CA/304:308 | NA | NA | ||
| 1/CA/367:369, 1/CA/392:393 | NA | NA | ||
| 1/CA/370:375, 1/CA/389:391 | NA | NA | ||
| 1/CA/375:377, 1/CA/386:389 | NA | NA | ||
| 1/CA/408:416, 1/CA/427:434 | NA | NA | ||
| 1/CA/504:511, 1/CA/540:541 | NA | NA | ||
| 1/CA/ |