Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V6M_0011/AA/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_67265.4
HL_4V6M_0021/AA/83:86No text annotation
Not in a motif group
geometric
HL_6U8D_003
HL_18722.3
HL_4V6M_0031/AA/158:163GNRA
Not in a motif group
homologous
HL_5J7L_003
HL_43074.18
HL_4V6M_0041/AA/186:191GNRA
Not in a motif group
homologous
HL_5J7L_004
HL_43074.18
HL_4V6M_0051/AA/207:212UNCG
Not in a motif group
homologous
HL_5J7L_005
HL_79299.11
HL_4V6M_0061/AA/259:267No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_93727.5
HL_4V6M_0071/AA/296:301GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_43074.18
HL_4V6M_0081/AA/320:333No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_4V6M_0091/AA/342:347No text annotation
Not in a motif group
homologous
HL_6CZR_080
HL_79299.11
HL_4V6M_0101/AA/379:384GNRA
Not in a motif group
homologous
HL_5J7L_010
HL_43074.18
HL_4V6M_0111/AA/419:424UNCG
Not in a motif group
homologous
HL_4LFB_011
HL_79299.11
HL_4V6M_0121/AA/462:470No text annotation
Not in a motif group
HL_4V6M_0131/AA/522:527No text annotation
Not in a motif group
geometric
HL_5TBW_022
HL_15942.5
HL_4V6M_0141/AA/617:623No text annotation
Not in a motif group
homologous
HL_5J7L_014
HL_26055.6
HL_4V6M_0151/AA/689:698No text annotation
Not in a motif group
homologous
HL_5J7L_015
HL_87219.4
HL_4V6M_0161/AA/726:731Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_43074.18
HL_4V6M_0171/AA/786:796No text annotation
Not in a motif group
homologous
HL_6CZR_088
HL_87219.4
HL_4V6M_0181/AA/840:846No text annotation
Not in a motif group
HL_4V6M_0191/AA/862:867GNRA
Not in a motif group
homologous
HL_5J7L_019
HL_43074.18
HL_4V6M_0201/AA/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_43074.18
HL_4V6M_0211/AA/963:972No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_4V6M_0221/AA/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_43074.18
HL_4V6M_0231/AA/1028:1033UNCG
Not in a motif group
geometric
HL_1I6U_001
HL_79299.11
HL_4V6M_0241/AA/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_43074.18
HL_4V6M_0251/AA/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_54035.7
HL_4V6M_0261/AA/1134:1140No text annotation
Not in a motif group
homologous
HL_5J7L_025
HL_01472.4
HL_4V6M_0271/AA/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_43074.18
HL_4V6M_0281/AA/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_43074.18
HL_4V6M_0291/AA/1314:1323No text annotation
Not in a motif group
homologous
HL_5J7L_028
HL_78061.2
HL_4V6M_0301/AA/1356:1366No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_70505.1
HL_4V6M_0311/AA/1449:1454UNCG
Not in a motif group
homologous
HL_5J7L_030
HL_79299.11
HL_4V6M_0321/AA/1515:1520No text annotation
Not in a motif group
homologous
HL_6CZR_103
NA
HL_4V6M_0331/AV/13:23No text annotation
Not in a motif group
homologous
HL_1N78_001
HL_41778.1
HL_4V6M_0341/AV/32:40tRNA anticodon loop
Not in a motif group
geometric
HL_4V9Q_214
HL_97724.2
HL_4V6M_0351/AV/54:62T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_3FOZ_006
HL_33239.17
HL_4V6M_0361/B7/38:44No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_58912.1
HL_4V6M_0371/B7/86:90No text annotation
Not in a motif group
homologous
HL_5J7L_204
HL_36982.3
HL_4V6M_0381/B8/59:68No text annotation
Not in a motif group
homologous
HL_5J7L_134
HL_29414.1
HL_4V6M_0391/B8/87:95No text annotation
Not in a motif group
homologous
HL_5J7L_135
HL_17926.5
HL_4V6M_0401/B8/123:128No text annotation
Not in a motif group
homologous
HL_4WF9_003
HL_62869.3
HL_4V6M_0411/B8/137:142UNCG
Not in a motif group
geometric
HL_1NBS_006
HL_79299.11
HL_4V6M_0421/B8/158:168No text annotation
Not in a motif group
HL_4V6M_0431/B8/194:201No text annotation
Not in a motif group
geometric
HL_7RQB_006
HL_23481.5
HL_4V6M_0441/B8/225:230No text annotation
Not in a motif group
homologous
HL_5J7L_140
HL_35894.3
HL_4V6M_0451/B8/246:252No text annotation
Not in a motif group
homologous
HL_4WF9_008
HL_67216.5
HL_4V6M_0461/B8/305:312T-loop with 1 bulged base
Not in a motif group
homologous
HL_5J7L_142
HL_68493.6
HL_4V6M_0471/B8/319:323No text annotation
Not in a motif group
homologous
HL_5J7L_143
HL_98557.5
HL_4V6M_0481/B8/327:335No text annotation
Not in a motif group
homologous
HL_4WF9_012
HL_08002.6
HL_4V6M_0491/B8/382:392No text annotation
Not in a motif group
homologous
HL_5J7L_145
HL_91503.3
HL_4V6M_0501/B8/410:417No text annotation
Not in a motif group
homologous
HL_5J7L_146
HL_32512.8
HL_4V6M_0511/B8/462:467No text annotation
Not in a motif group
homologous
HL_7RQB_015
HL_43074.18
HL_4V6M_0521/B8/487:493No text annotation
Not in a motif group
HL_4V6M_0531/B8/543:550No text annotation
Not in a motif group
HL_4V6M_0541/B8/566:575T-loop with 2 stacked bulged bases
Not in a motif group
geometric
HL_5J7L_150
HL_33239.17
HL_4V6M_0551/B8/611:617No text annotation
Not in a motif group
homologous
HL_5J7L_151
HL_25660.1
HL_4V6M_0561/B8/629:634GNRA
Not in a motif group
homologous
HL_5J7L_152
HL_43074.18
HL_4V6M_0571/B8/641:647GNRA with one bulged base
Not in a motif group
homologous
HL_4WF9_021
HL_02361.6
HL_4V6M_0581/B8/712:719No text annotation
Not in a motif group
homologous
HL_5J7L_154
HL_93727.5
HL_4V6M_0591/B8/744:753No text annotation
Not in a motif group
homologous
HL_4WF9_023
HL_39334.5
HL_4V6M_0601/B8/779:785No text annotation
Not in a motif group
geometric
HL_7A0S_007
HL_06569.2
HL_4V6M_0611/B8/826:831No text annotation
Not in a motif group
homologous
HL_7RQB_025
HL_15942.5
HL_4V6M_0621/B8/885:891No text annotation
Not in a motif group
HL_4V6M_0631/B8/955:962GNRA
Not in a motif group
homologous
HL_4WF9_027
HL_43074.18
HL_4V6M_0641/B8/978:985No text annotation
Not in a motif group
homologous
HL_5J7L_160
HL_72451.5
HL_4V6M_0651/B8/1064:1074No text annotation
Not in a motif group
homologous
HL_1MMS_001
HL_92304.3
HL_4V6M_0661/B8/1092:1099No text annotation
Not in a motif group
homologous
HL_7RQB_030
NA
HL_4V6M_0671/B8/1172:1177No text annotation
Not in a motif group
geometric
HL_7A0S_007
HL_06569.2
HL_4V6M_0681/B8/1222:1227Other HL
Not in a motif group
homologous
HL_5J7L_164
HL_43074.18
HL_4V6M_0691/B8/1281:1289T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_165
HL_33239.17
HL_4V6M_0701/B8/1324:1330No text annotation
Not in a motif group
homologous
HL_5J7L_166
HL_86880.5
HL_4V6M_0711/B8/1363:1368Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_43074.18
HL_4V6M_0721/B8/1389:1398No text annotation
Not in a motif group
homologous
HL_7RQB_036
HL_78457.4
HL_4V6M_0731/B8/1450:1461No text annotation
Not in a motif group
HL_4V6M_0741/B8/1492:1498No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_86880.5
HL_4V6M_0751/B8/1533:1538UNCG
Not in a motif group
homologous
HL_5J7L_171
HL_79299.11
HL_4V6M_0761/B8/1565:1568No text annotation
Not in a motif group
homologous
HL_7A0S_039
HL_69353.7
HL_4V6M_0771/B8/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_66171.3
HL_4V6M_0781/B8/1630:1636GNRA with one bulged base
Not in a motif group
homologous
HL_5J7L_174
HL_02361.6
HL_4V6M_0791/B8/1691:1696UNCG
Not in a motif group
homologous
HL_5J7L_175
HL_79299.11
HL_4V6M_0801/B8/1728:1731No text annotation
Not in a motif group
homologous
HL_5J7L_176
HL_46546.1
HL_4V6M_0811/B8/1752:1756No text annotation
Not in a motif group
homologous
HL_5J7L_177
HL_79272.3
HL_4V6M_0821/B8/1777:1787No text annotation
Not in a motif group
homologous
HL_4WF9_043
HL_43613.4
HL_4V6M_0831/B8/1806:1811No text annotation
Not in a motif group
homologous
HL_5J7L_179
HL_32527.3
HL_4V6M_0841/B8/1868:1873Other HL
Not in a motif group
homologous
HL_5J7L_180
HL_43074.18
HL_4V6M_0851/B8/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_98248.1
HL_4V6M_0861/B8/1949:1957No text annotation
Not in a motif group
homologous
HL_5J7L_182
HL_53760.4
HL_4V6M_0871/B8/2027:2036No text annotation
Not in a motif group
homologous
HL_4WF9_047
HL_90642.5
HL_4V6M_0881/B8/2143:2148No text annotation
Not in a motif group
geometric
HL_4O26_001
HL_61984.1
HL_4V6M_0891/B8/2209:2215No text annotation
Not in a motif group
homologous
HL_5J7L_185
HL_16845.5
HL_4V6M_0901/B8/2248:2256No text annotation
Not in a motif group
homologous
HL_7A0S_052
HL_46891.3
HL_4V6M_0911/B8/2264:2276No text annotation
Not in a motif group
homologous
HL_4WF9_050
HL_19870.5
HL_4V6M_0921/B8/2303:2313No text annotation
Not in a motif group
HL_4V6M_0931/B8/2324:2331No text annotation
Not in a motif group
homologous
HL_5J7L_189
HL_46142.8
HL_4V6M_0941/B8/2356:2361Other HL
Not in a motif group
homologous
HL_5J7L_190
HL_43074.18
HL_4V6M_0951/B8/2374:2379GNRA
Not in a motif group
homologous
HL_5J7L_191
HL_43074.18
HL_4V6M_0961/B8/2404:2413No text annotation
Not in a motif group
homologous
HL_7A0S_058
HL_48376.4
HL_4V6M_0971/B8/2471:2479No text annotation
Not in a motif group
homologous
HL_4WF9_056
HL_36421.5
HL_4V6M_0981/B8/2528:2535No text annotation
Not in a motif group
homologous
HL_7RQB_061
HL_92681.5
HL_4V6M_0991/B8/2551:2557No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_26055.6
HL_4V6M_1001/B8/2594:2599GNRA
Not in a motif group
homologous
HL_5J7L_196
HL_43074.18
HL_4V6M_1011/B8/2658:2663GNRA
Not in a motif group
geometric
HL_5D5L_001
HL_43074.18
HL_4V6M_1021/B8/2701:2706Ribsomal LSU H95
Not in a motif group
homologous
HL_5J7L_198
HL_67719.1
HL_4V6M_1031/B8/2745:2759No text annotation
Not in a motif group
homologous
HL_5J7L_199
HL_56677.5
HL_4V6M_1041/B8/2796:2800No text annotation
Not in a motif group
geometric
HL_4YAZ_004
HL_57052.3
HL_4V6M_1051/B8/2819:2827No text annotation
Not in a motif group
homologous
HL_5J7L_201
HL_05018.6
HL_4V6M_1061/B8/2856:2861Other HL
Not in a motif group
homologous
HL_5J7L_202
HL_43074.18

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V6M_0011/AA/30:32,
1/AA/552:553
Single bulged G
Not in a motif group
homologous
IL_6CZR_113
IL_59137.10
IL_4V6M_0021/AA/44:45,
1/AA/396:398
Single bulged A
Not in a motif group
homologous
IL_5J7L_002
IL_80007.16
IL_4V6M_0031/AA/47:52,
1/AA/359:361
No text annotation
Not in a motif group
homologous
IL_4LFB_003
IL_34626.4
IL_4V6M_0041/AA/54:56,
1/AA/356:357
Minor groove platform
Not in a motif group
homologous
IL_5J7L_004
IL_06437.11
IL_4V6M_0051/AA/63:66,
1/AA/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_005
IL_13730.12
IL_4V6M_0061/AA/67:69,
1/AA/99:102
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_87332.1
IL_4V6M_0071/AA/70:73,
1/AA/97:98
Minor groove platform
Not in a motif group
homologous
IL_5J7L_007
IL_94431.4
IL_4V6M_0081/AA/75:76,
1/AA/93:95
Major groove intercalation
Not in a motif group
geometric
IL_5J7L_352
IL_80663.10
IL_4V6M_0091/AA/128:131,
1/AA/231:233
No text annotation
Not in a motif group
IL_4V6M_0101/AA/132:136,
1/AA/227:230
No text annotation
Not in a motif group
homologous
IL_4LFB_008
IL_58764.1
IL_4V6M_0111/AA/144:146,
1/AA/176:178
Isolated cWH basepair
Not in a motif group
homologous
IL_5J7L_011
IL_42589.6
IL_4V6M_0121/AA/147:153,
1/AA/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_92440.5
IL_4V6M_0131/AA/203:206,
1/AA/213:214
Minor groove platform
Not in a motif group
geometric
IL_3IWN_005
IL_94431.4
IL_4V6M_0141/AA/242:247,
1/AA/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_5J7L_014
IL_29549.9
IL_4V6M_0151/AA/249:252,
1/AA/274:275
No text annotation
Not in a motif group
IL_4V6M_0161/AA/292:293,
1/AA/304:308
C-loop
Not in a motif group
homologous
IL_5J7L_016
IL_08376.2
IL_4V6M_0171/AA/367:369,
1/AA/392:393
Single bulged U
Not in a motif group
homologous
IL_4LFB_014
IL_83039.11
IL_4V6M_0181/AA/371:375,
1/AA/389:390
C-loop
Not in a motif group
geometric
IL_4LFB_015
IL_63596.4
IL_4V6M_0191/AA/375:376,
1/AA/387:389
Single bulged G
Not in a motif group
homologous
IL_5J7L_019
IL_59137.10
IL_4V6M_0201/AA/409:416,
1/AA/427:433
No text annotation
Not in a motif group
homologous
IL_4LFB_017
IL_45257.1
IL_4V6M_0211/AA/440:442,
1/AA/492:497
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_45289.1
IL_4V6M_0221/AA/446:450,
1/AA/483:488
tSH-tHW-tWW
Not in a motif group
homologous
IL_5J7L_022
IL_98711.1
IL_4V6M_0231/AA/450:455,
1/AA/477:483
No text annotation
Not in a motif group
geometric
IL_4LFB_019
IL_11882.1
IL_4V6M_0241/AA/458:459,
1/AA/472:474
Single stack bend
Not in a motif group
geometric
IL_7KGA_003
IL_04038.4
IL_4V6M_0251/AA/460:462,
1/AA/470:471
Single bulged A
Not in a motif group
geometric
IL_4V9F_098
IL_80007.16
IL_4V6M_0261/AA/504:511,
1/AA/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_024
IL_15861.6
IL_4V6M_0271/AA/515:521,
1/AA/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_04667.1
IL_4V6M_0281/AA/569:575,
1/AA/880:881
No text annotation
Not in a motif group
IL_4V6M_0291/AA/580:584,
1/AA/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_027
IL_39521.5
IL_4V6M_0301/AA/594:596,
1/AA/644:645
Major groove platform
Not in a motif group
homologous
IL_5J7L_028
IL_80663.10
IL_4V6M_0311/AA/597:598,
1/AA/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.4
IL_4V6M_0321/AA/605:612,
1/AA/628:633
No text annotation
Not in a motif group
homologous
IL_5J7L_030
IL_01502.1
IL_4V6M_0331/AA/654:655,
1/AA/751:754
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_5J7L_031
IL_80663.10
IL_4V6M_0341/AA/658:659,
1/AA/746:748
Single stack bend
Not in a motif group
homologous
IL_5J7L_032
IL_04038.4
IL_4V6M_0351/AA/662:666,
1/AA/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_85877.10
IL_4V6M_0361/AA/673:678,
1/AA/712:717
No text annotation
Not in a motif group
homologous
IL_4LFB_030
IL_94518.4
IL_4V6M_0371/AA/683:688,
1/AA/699:707
Kink-turn
Not in a motif group
homologous
IL_4LFB_031
IL_37722.1
IL_4V6M_0381/AA/774:778,
1/AA/804:805
Left turn
Not in a motif group
homologous
IL_4LFB_032
IL_19389.4
IL_4V6M_0391/AA/779:783,
1/AA/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_037
IL_39521.5
IL_4V6M_0401/AA/887:894,
1/AA/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4LFB_034
IL_24606.1
IL_4V6M_0411/AA/922:923,
1/AA/1393:1395
Single bulged A
Not in a motif group
homologous
IL_5J7L_039
IL_80007.16
IL_4V6M_0421/AA/925:927,
1/AA/1390:1391
Single bulged G
Not in a motif group
homologous
IL_5J7L_040
IL_59137.10
IL_4V6M_0431/AA/933:935,
1/AA/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_4LFB_037
IL_94431.4
IL_4V6M_0441/AA/953:954,
1/AA/1226:1228
Minor groove platform
Not in a motif group
homologous
IL_4LFB_038
IL_06437.11
IL_4V6M_0451/AA/993:997,
1/AA/1044:1045
Minor groove platform
Not in a motif group
geometric
IL_5J7L_043
IL_94431.4
IL_4V6M_0461/AA/998:999,
1/AA/1041:1043
Single stack bend
Not in a motif group
homologous
IL_5J7L_044
IL_04038.4
IL_4V6M_0471/AA/1048:1050,
1/AA/1208:1209
Single bulged U
Not in a motif group
homologous
IL_5J7L_046
IL_83039.11
IL_4V6M_0481/AA/1052:1056,
1/AA/1204:1206
Isolated cWS basepair
Not in a motif group
homologous
IL_4LFB_044
IL_67621.5
IL_4V6M_0491/AA/1057:1058,
1/AA/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_06437.11
IL_4V6M_0501/AA/1060:1061,
1/AA/1195:1197
Single bulged A
Not in a motif group
geometric
IL_5TBW_058
IL_80007.16
IL_4V6M_0511/AA/1061:1063,
1/AA/1193:1195
No text annotation
Not in a motif group
geometric
IL_5VCI_001
IL_01312.13
IL_4V6M_0521/AA/1124:1128,
1/AA/1144:1149
No text annotation
Not in a motif group
homologous
IL_5J7L_051
IL_58346.1
IL_4V6M_0531/AA/1129:1132,
1/AA/1142:1143
Minor groove platform
Not in a motif group
homologous
IL_5J7L_052
IL_94431.4
IL_4V6M_0541/AA/1158:1161,
1/AA/1175:1181
No text annotation
Not in a motif group
geometric
IL_5J7L_053
IL_42032.1
IL_4V6M_0551/AA/1247:1253,
1/AA/1284:1290
No text annotation
Not in a motif group
homologous
IL_5J7L_054
IL_09129.1
IL_4V6M_0561/AA/1255:1258,
1/AA/1277:1282
No text annotation
Not in a motif group
homologous
IL_4LFB_052
IL_75461.2
IL_4V6M_0571/AA/1259:1263,
1/AA/1272:1276
Triple sheared
Not in a motif group
homologous
IL_5J7L_056
IL_56467.6
IL_4V6M_0581/AA/1303:1308,
1/AA/1329:1334
No text annotation
Not in a motif group
geometric
IL_4V88_462
IL_19954.1
IL_4V6M_0591/AA/1399:1401,
1/AA/1501:1504
No text annotation
Not in a motif group
geometric
IL_5J7L_058
IL_36143.2
IL_4V6M_0601/AA/1401:1404,
1/AA/1497:1501
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_59281.1
IL_4V6M_0611/AA/1405:1407,
1/AA/1494:1496
No text annotation
Not in a motif group
geometric
IL_5MWI_004
IL_01312.13
IL_4V6M_0621/AA/1407:1409,
1/AA/1491:1494
Decoding loop related
Not in a motif group
geometric
IL_5Z1I_002
IL_98882.3
IL_4V6M_0631/AA/1412:1414,
1/AA/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_01312.13
IL_4V6M_0641/AA/1416:1419,
1/AA/1481:1484
Double sheared
Not in a motif group
homologous
IL_6CZR_169
IL_09705.7
IL_4V6M_0651/AA/1430:1435,
1/AA/1466:1470
Triple sheared related
Not in a motif group
homologous
IL_5J7L_063
IL_64879.1
IL_4V6M_0661/AA/1440:1442,
1/AA/1460:1461
Minor groove platform
Not in a motif group
homologous
IL_5J7L_064
IL_06437.11
IL_4V6M_0671/AA/1445:1448,
1/AA/1455:1457
No text annotation
Not in a motif group
homologous
IL_5J7L_065
IL_02284.3
IL_4V6M_0681/AV/30:32,
1/AV/40:42
Self complementary
Not in a motif group
homologous
IL_5E81_371
IL_01312.13
IL_4V6M_0691/B7/17:18,
1/B7/65:67
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_355
IL_40508.4
IL_4V6M_0701/B7/23:28,
1/B7/56:60
No text annotation
Not in a motif group
IL_4V6M_0711/B7/30:31,
1/B7/51:54
No text annotation
Not in a motif group
IL_4V6M_0721/B7/34:38,
1/B7/44:48
Symmetric double minor groove platform
Not in a motif group
homologous
IL_5J7L_358
IL_58103.5
IL_4V6M_0731/B7/71:79,
1/B7/97:105
Bacterial 5S Loop E
Not in a motif group
homologous
IL_7RQB_115
IL_56455.3
IL_4V6M_0741/B8/24:30,
1/B8/510:516
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_245
IL_66414.5
IL_4V6M_0751/B8/36:37,
1/B8/442:444
Single bulged A
Not in a motif group
homologous
IL_7RQB_002
IL_80007.16
IL_4V6M_0761/B8/43:44,
1/B8/434:436
Minor groove platform
Not in a motif group
homologous
IL_5J7L_247
IL_06437.11
IL_4V6M_0771/B8/81:85,
1/B8/97:105
No text annotation
Not in a motif group
homologous
IL_5J7L_248
IL_85931.1
IL_4V6M_0781/B8/183:184,
1/B8/212:214
Single stack bend
Not in a motif group
homologous
IL_5J7L_249
IL_04038.4
IL_4V6M_0791/B8/188:194,
1/B8/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_006
IL_04346.5
IL_4V6M_0801/B8/239:245,
1/B8/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_251
IL_35110.5
IL_4V6M_0811/B8/269:271,
1/B8/366:370
No text annotation
Not in a motif group
homologous
IL_5J7L_252
IL_47972.1
IL_4V6M_0821/B8/274:281,
1/B8/359:363
No text annotation
Not in a motif group
homologous
IL_5J7L_253
IL_77870.1
IL_4V6M_0831/B8/293:295,
1/B8/343:347
No text annotation
Not in a motif group
homologous
IL_4WF9_014
IL_69440.1
IL_4V6M_0841/B8/481:484,
1/B8/496:509
No text annotation
Not in a motif group
homologous
IL_5J7L_255
IL_60992.5
IL_4V6M_0851/B8/536:539,
1/B8/554:557
Double sheared
Not in a motif group
homologous
IL_5J7L_256
IL_09705.7
IL_4V6M_0861/B8/564:566,
1/B8/575:577
No text annotation
Not in a motif group
homologous
IL_5J7L_257
IL_01312.13
IL_4V6M_0871/B8/606:610,
1/B8/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_5J7L_258
IL_56467.6
IL_4V6M_0881/B8/672:674,
1/B8/806:808
No text annotation
Not in a motif group
homologous
IL_5J7L_259
IL_01312.13
IL_4V6M_0891/B8/674:678,
1/B8/799:806
No text annotation
Not in a motif group
geometric
IL_7RQB_018
IL_17470.5
IL_4V6M_0901/B8/697:698,
1/B8/763:765
Single bulged A
Not in a motif group
homologous
IL_5J7L_261
IL_80007.16
IL_4V6M_0911/B8/702:703,
1/B8/728:730
Single bulged G
Not in a motif group
homologous
IL_7RQB_020
IL_59137.10
IL_4V6M_0921/B8/703:707,
1/B8/724:728
Triple sheared
Not in a motif group
geometric
IL_7RQB_021
IL_56467.6
IL_4V6M_0931/B8/738:740,
1/B8/757:758
Major groove platform
Not in a motif group
homologous
IL_5J7L_264
IL_80663.10
IL_4V6M_0941/B8/775:777,
1/B8/787:791
Multiple bulged bases
Not in a motif group
geometric
IL_5TBW_033
IL_90991.5
IL_4V6M_0951/B8/837:838,
1/B8/940:942
No text annotation
Not in a motif group
IL_4V6M_0961/B8/844:848,
1/B8/930:934
No text annotation
Not in a motif group
IL_4V6M_0971/B8/850:851,
1/B8/926:928
Single stack bend
Not in a motif group
homologous
IL_5J7L_269
IL_04038.4
IL_4V6M_0981/B8/856:858,
1/B8/919:921
No text annotation
Not in a motif group
geometric
IL_5TBW_068
IL_01312.13
IL_4V6M_0991/B8/858:862,
1/B8/915:919
5x5 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
homologous
IL_7RQB_027
IL_83354.1
IL_4V6M_1001/B8/862:863,
1/B8/913:915
Single bulged G
Not in a motif group
geometric
IL_5J7L_271
IL_59137.10
IL_4V6M_1011/B8/864:868,
1/B8/909:912
C-loop
Not in a motif group
homologous
IL_5J7L_272
IL_63596.4
IL_4V6M_1021/B8/870:872,
1/B8/905:907
No text annotation
Not in a motif group
homologous
IL_5J7L_273
IL_01312.13
IL_4V6M_1031/B8/875:879,
1/B8/898:902
No text annotation
Not in a motif group
IL_4V6M_1041/B8/880:883,
1/B8/893:897
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_6JDV_002
IL_85877.10
IL_4V6M_1051/B8/994:996,
1/B8/1159:1160
Single bulged C
Not in a motif group
homologous
IL_4WF9_035
IL_61258.10
IL_4V6M_1061/B8/998:1002,
1/B8/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_5J7L_277
IL_53523.5
IL_4V6M_1071/B8/1004:1011,
1/B8/1150:1151
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_278
IL_15861.6
IL_4V6M_1081/B8/1011:1013,
1/B8/1149:1150
Single bulged U
Not in a motif group
geometric
IL_5J7L_279
IL_83039.11
IL_4V6M_1091/B8/1018:1024,
1/B8/1140:1144
No text annotation
Not in a motif group
homologous
IL_4WF9_039
IL_57188.3
IL_4V6M_1101/B8/1024:1030,
1/B8/1124:1140
No text annotation
Not in a motif group
geometric
IL_5J7L_281
IL_22615.1
IL_4V6M_1111/B8/1031:1034,
1/B8/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_282
IL_55456.1
IL_4V6M_1121/B8/1038:1041,
1/B8/1114:1117
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_283
IL_85877.10
IL_4V6M_1131/B8/1043:1051,
1/B8/1108:1112
No text annotation
Not in a motif group
IL_4V6M_1141/B8/1059:1062,
1/B8/1076:1079
No text annotation
Not in a motif group
homologous
IL_6PRV_001
IL_23544.2
IL_4V6M_1151/B8/1087:1090,
1/B8/1101:1102
Major groove platform
Not in a motif group
geometric
IL_4WF9_026
IL_80663.10
IL_4V6M_1161/B8/1196:1198,
1/B8/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_5J7L_286
IL_67621.5
IL_4V6M_1171/B8/1202:1206,
1/B8/1240:1243
No text annotation
Not in a motif group
homologous
IL_5J7L_287
IL_91920.1
IL_4V6M_1181/B8/1208:1215,
1/B8/1234:1238
Kink-turn
Not in a motif group
homologous
IL_5J7L_288
IL_29549.9
IL_4V6M_1191/B8/1262:1269,
1/B8/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_289
IL_04346.5
IL_4V6M_1201/B8/1310:1313,
1/B8/1603:1604
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_050
IL_70995.6
IL_4V6M_1211/B8/1319:1323,
1/B8/1331:1333
C-loop
Not in a motif group
homologous
IL_5J7L_291
IL_08376.2
IL_4V6M_1221/B8/1351:1355,
1/B8/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_5J7L_292
IL_34907.2
IL_4V6M_1231/B8/1357:1361,
1/B8/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_39521.5
IL_4V6M_1241/B8/1415:1416,
1/B8/1582:1587
No text annotation
Not in a motif group
homologous
IL_5J7L_294
IL_90348.1
IL_4V6M_1251/B8/1417:1421,
1/B8/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_5J7L_295
IL_53523.5
IL_4V6M_1261/B8/1432:1435,
1/B8/1557:1561
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_296
IL_85877.10
IL_4V6M_1271/B8/1437:1440,
1/B8/1551:1555
No text annotation
Not in a motif group
IL_4V6M_1281/B8/1468:1471,
1/B8/1520:1524
No text annotation
Not in a motif group
homologous
IL_5J7L_299
IL_68574.2
IL_4V6M_1291/B8/1474:1478,
1/B8/1513:1517
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_300
IL_39521.5
IL_4V6M_1301/B8/1481:1482,
1/B8/1507:1510
No text annotation
Not in a motif group
IL_4V6M_1311/B8/1489:1491,
1/B8/1499:1500
Single bulged A
Not in a motif group
homologous
IL_7RQB_062
IL_40508.4
IL_4V6M_1321/B8/1526:1529,
1/B8/1542:1546
UAA/GAN variation
Not in a motif group
homologous
IL_5J7L_303
IL_81389.2
IL_4V6M_1331/B8/1651:1656,
1/B8/2004:2006
No text annotation
Not in a motif group
homologous
IL_5J7L_304
IL_12566.2
IL_4V6M_1341/B8/1663:1665,
1/B8/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_4WF9_063
IL_54997.5
IL_4V6M_1351/B8/1666:1669,
1/B8/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_7RQB_066
IL_80663.10
IL_4V6M_1361/B8/1669:1674,
1/B8/1990:1993
Intercalated tWH
Not in a motif group
homologous
IL_5J7L_307
IL_01312.13
IL_4V6M_1371/B8/1686:1691,
1/B8/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_7RQB_068
IL_66584.5
IL_4V6M_1381/B8/1712:1718,
1/B8/1742:1746
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_309
IL_88269.2
IL_4V6M_1391/B8/1720:1724,
1/B8/1736:1740
Triple sheared
Not in a motif group
homologous
IL_5J7L_310
IL_56467.6
IL_4V6M_1401/B8/1727:1728,
1/B8/1731:1733
Single bulged C
Not in a motif group
geometric
IL_3W3S_001
IL_61258.10
IL_4V6M_1411/B8/1770:1771,
1/B8/1980:1982
Single bulged A
Not in a motif group
homologous
IL_5J7L_312
IL_80007.16
IL_4V6M_1421/B8/1798:1804,
1/B8/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_5J7L_313
IL_17069.3
IL_4V6M_1431/B8/1837:1840,
1/B8/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_314
IL_06437.11
IL_4V6M_1441/B8/1841:1842,
1/B8/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_13730.12
IL_4V6M_1451/B8/1846:1849,
1/B8/1893:1894
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_316
IL_09061.4
IL_4V6M_1461/B8/1864:1867,
1/B8/1874:1878
UAA/GAN
Not in a motif group
homologous
IL_4WF9_075
IL_53523.5
IL_4V6M_1471/B8/1933:1934,
1/B8/1964:1967
Multiple bulged bases
Not in a motif group
geometric
IL_7V9E_001
IL_13730.12
IL_4V6M_1481/B8/1934:1945,
1/B8/1961:1964
No text annotation
Not in a motif group
homologous
IL_7A0S_072
IL_07097.1
IL_4V6M_1491/B8/2050:2052,
1/B8/2617:2618
Major groove platform
Not in a motif group
homologous
IL_5J7L_320
IL_80663.10
IL_4V6M_1501/B8/2054:2056,
1/B8/2612:2615
No text annotation
Not in a motif group
IL_4V6M_1511/B8/2067:2069,
1/B8/2442:2443
Single bulged U
Not in a motif group
homologous
IL_7RQB_080
IL_83039.11
IL_4V6M_1521/B8/2070:2071,
1/B8/2438:2441
Minor groove platform
Not in a motif group
homologous
IL_7RQB_081
IL_06437.11
IL_4V6M_1531/B8/2081:2083,
1/B8/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_5J7L_325
IL_38958.6
IL_4V6M_1541/B8/2085:2087,
1/B8/2232:2234
No text annotation
Not in a motif group
homologous
IL_5J7L_326
IL_01312.13
IL_4V6M_1551/B8/2103:2105,
1/B8/2184:2186
No text annotation
Not in a motif group
geometric
IL_1NBS_006
IL_01312.13
IL_4V6M_1561/B8/2108:2110,
1/B8/2179:2181
No text annotation
Not in a motif group
homologous
IL_3U4M_001
IL_01312.13
IL_4V6M_1571/B8/2110:2122,
1/B8/2176:2179
No text annotation
Not in a motif group
IL_4V6M_1581/B8/2202:2204,
1/B8/2220:2221
Single bulged U
Not in a motif group
homologous
IL_5J7L_331
IL_21340.1
IL_4V6M_1591/B8/2297:2299,
1/B8/2317:2321
No text annotation
Not in a motif group
homologous
IL_5J7L_332
IL_56105.1
IL_4V6M_1601/B8/2350:2353,
1/B8/2364:2367
Double sheared
Not in a motif group
homologous
IL_5J7L_333
IL_09705.7
IL_4V6M_1611/B8/2401:2403,
1/B8/2414:2415
Single bulged U
Not in a motif group
geometric
IL_1ET4_002
IL_83039.11
IL_4V6M_1621/B8/2453:2454,
1/B8/2498:2500
Single stack bend
Not in a motif group
geometric
IL_4WF9_089
IL_04038.4
IL_4V6M_1631/B8/2454:2455,
1/B8/2496:2498
Major groove platform
Not in a motif group
homologous
IL_4WF9_090
IL_80663.10
IL_4V6M_1641/B8/2457:2459,
1/B8/2493:2494
Major groove platform
Not in a motif group
geometric
IL_5TBW_104
IL_80663.10
IL_4V6M_1651/B8/2459:2461,
1/B8/2489:2493
Major groove minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_337
IL_96042.4
IL_4V6M_1661/B8/2466:2470,
1/B8/2480:2484
Triple sheared
Not in a motif group
homologous
IL_5J7L_338
IL_56467.6
IL_4V6M_1671/B8/2507:2508,
1/B8/2580:2582
Major groove platform
Not in a motif group
homologous
IL_7A0S_088
IL_02060.4
IL_4V6M_1681/B8/2510:2512,
1/B8/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5J7L_340
IL_01312.13
IL_4V6M_1691/B8/2512:2513,
1/B8/2571:2574
No text annotation
Not in a motif group
homologous
IL_5J7L_341
IL_44093.1
IL_4V6M_1701/B8/2522:2523,
1/B8/2540:2543
Minor groove platform with intercalation
Not in a motif group
homologous
IL_7RQB_099
IL_95601.1
IL_4V6M_1711/B8/2591:2592,
1/B8/2601:2603
Single bulged A
Not in a motif group
homologous
IL_5J7L_344
IL_80007.16
IL_4V6M_1721/B8/2636:2640,
1/B8/2774:2782
No text annotation
Not in a motif group
homologous
IL_5J7L_345
IL_03420.1
IL_4V6M_1731/B8/2652:2658,
1/B8/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
homologous
IL_7RQB_103
IL_35110.5
IL_4V6M_1741/B8/2680:2684,
1/B8/2725:2727
C-loop
Not in a motif group
homologous
IL_5J7L_347
IL_63596.4
IL_4V6M_1751/B8/2687:2691,
1/B8/2718:2722
No text annotation
Not in a motif group
homologous
IL_5J7L_348
IL_08296.3
IL_4V6M_1761/B8/2695:2696,
1/B8/2711:2714
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_349
IL_13730.12
IL_4V6M_1771/B8/2737:2742,
1/B8/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_5J7L_350
IL_49767.4
IL_4V6M_1781/B8/2806:2811,
1/B8/2889:2892
No text annotation
Not in a motif group
homologous
IL_5J7L_351
IL_82988.1
IL_4V6M_1791/B8/2838:2839,
1/B8/2878:2880
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_352
IL_80663.10
IL_4V6M_1801/B8/2843:2846,
1/B8/2870:2874
Multiple bulged bases with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_353
IL_58764.1
IL_4V6M_1811/B8/2847:2852,
1/B8/2865:2869
No text annotation
Not in a motif group
homologous
IL_5J7L_354
IL_83162.3

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4V6M_0011/AA/46:47,
1/AA/361:367,
1/AA/393:395
No text annotation
Not in a motif group
J3_4V6M_0021/AA/586:588,
1/AA/651:654,
1/AA/754:755
No text annotation
Not in a motif group
J3_4V6M_0031/AA/672:673,
1/AA/717:725,
1/AA/732:734
No text annotation
Not in a motif group
J3_4V6M_0041/AA/826:829,
1/AA/857:861,
1/AA/868:874
No text annotation
Not in a motif group
homologous
J3_5J7L_004
NA
J3_4V6M_0051/AA/936:939,
1/AA/1344:1350,
1/AA/1372:1379
No text annotation
Not in a motif group
homologous
J3_4LFB_002
NA
J3_4V6M_0061/AA/943:946,
1/AA/1235:1237,
1/AA/1337:1340
No text annotation
Not in a motif group
J3_4V6M_0071/AA/955:962,
1/AA/973:984,
1/AA/1221:1225
No text annotation
Not in a motif group
homologous
J3_4LFB_004
NA
J3_4V6M_0081/AA/990:993,
1/AA/1045:1047,
1/AA/1210:1215
No text annotation
Not in a motif group
homologous
J3_4LFB_005
NA
J3_4V6M_0091/AA/1003:1006,
1/AA/1023:1027,
1/AA/1034:1037
No text annotation
Not in a motif group
J3_4V6M_0101/AA/1063:1068,
1/AA/1107:1113,
1/AA/1187:1193
No text annotation
Not in a motif group
homologous
J3_5J7L_008
NA
J3_4V6M_0111/AA/1073:1074,
1/AA/1083:1087,
1/AA/1098:1102
No text annotation
Not in a motif group
homologous
J3_6CZR_024
NA
J3_4V6M_0121/AA/1116:1118,
1/AA/1155:1158,
1/AA/1181:1184
No text annotation
Not in a motif group
homologous
J3_5J7L_010
NA
J3_4V6M_0131/AA/1237:1241,
1/AA/1296:1303,
1/AA/1334:1337
No text annotation
Not in a motif group
homologous
J3_4LFB_009
NA
J3_4V6M_0141/B7/10:16,
1/B7/68:70,
1/B7/106:110
No text annotation
Not in a motif group
J3_4V6M_0151/B8/30:31,
1/B8/474:481,
1/B8/509:510
No text annotation
Not in a motif group
J3_4V6M_0161/B8/56:57,
1/B8/70:76,
1/B8/110:114
No text annotation
Not in a motif group
homologous
J3_5J7L_037
NA
J3_4V6M_0171/B8/683:689,
1/B8/773:775,
1/B8/791:794
No text annotation
Not in a motif group
homologous
J3_5J7L_038
NA
J3_4V6M_0181/B8/698:700,
1/B8/732:736,
1/B8/760:763
No text annotation
Not in a motif group
J3_4V6M_0191/B8/1055:1057,
1/B8/1081:1087,
1/B8/1102:1104
No text annotation
Not in a motif group
homologous
J3_6PRV_001
NA
J3_4V6M_0201/B8/1298:1303,
1/B8/1625:1627,
1/B8/1639:1642
No text annotation
Not in a motif group
homologous
J3_5J7L_041
NA
J3_4V6M_0211/B8/1306:1309,
1/B8/1605:1611,
1/B8/1620:1622
No text annotation
Not in a motif group
homologous
J3_7A0S_007
NA
J3_4V6M_0221/B8/1344:1350,
1/B8/1381:1385,
1/B8/1402:1403
No text annotation
Not in a motif group
J3_4V6M_0231/B8/2091:2093,
1/B8/2196:2200,
1/B8/2223:2228
No text annotation
Not in a motif group
homologous
J3_5J7L_044
NA
J3_4V6M_0241/B8/2295:2297,
1/B8/2321:2323,
1/B8/2332:2337
No text annotation
Not in a motif group
J3_4V6M_0251/B8/2517:2520,
1/B8/2545:2547,
1/B8/2561:2567
No text annotation
Not in a motif group
homologous
J3_5J7L_046
NA
J3_4V6M_0261/B8/2789:2791,
1/B8/2805:2806,
1/B8/2892:2894
No text annotation
Not in a motif group
J3_4V6M_0271/B8/2812:2815,
1/B8/2831:2836,
1/B8/2882:2888
No text annotation
Not in a motif group

Problematic loops

No problematic loops


Coloring options: