4V6M Internal, hairpin and 3-way junction loop motifs
Valid loops
# | loop id | location | motif |
---|---|---|---|
1 | ➜ | 1/AA/30:32,1/AA/552:553 | NA |
2 | ➜ | 1/AA/44:45,1/AA/396:398 | NA |
3 | ➜ | 1/AA/47:52,1/AA/359:361 | NA |
4 | ➜ | 1/AA/54:56,1/AA/356:357 | NA |
5 | ➜ | 1/AA/63:66,1/AA/103:104 | NA |
6 | ➜ | 1/AA/67:69,1/AA/99:102 | NA |
7 | ➜ | 1/AA/70:73,1/AA/97:98 | NA |
8 | ➜ | 1/AA/75:76,1/AA/93:95 | NA |
9 | ➜ | 1/AA/128:131,1/AA/231:233 | NA |
10 | ➜ | 1/AA/132:136,1/AA/227:230 | NA |
11 | ➜ | 1/AA/144:146,1/AA/176:178 | NA |
12 | ➜ | 1/AA/147:153,1/AA/168:175 | NA |
13 | ➜ | 1/AA/203:206,1/AA/213:214 | NA |
14 | ➜ | 1/AA/242:247,1/AA/277:284 | NA |
15 | ➜ | 1/AA/249:252,1/AA/274:275 | NA |
16 | ➜ | 1/AA/292:293,1/AA/304:308 | NA |
17 | ➜ | 1/AA/367:369,1/AA/392:393 | NA |
18 | ➜ | 1/AA/371:375,1/AA/389:390 | NA |
19 | ➜ | 1/AA/375:376,1/AA/387:389 | NA |
20 | ➜ | 1/AA/409:416,1/AA/427:433 | NA |
21 | ➜ | 1/AA/440:442,1/AA/492:497 | NA |
22 | ➜ | 1/AA/446:450,1/AA/483:488 | NA |
23 | ➜ | 1/AA/450:455,1/AA/477:483 | NA |
24 | ➜ | 1/AA/458:459,1/AA/472:474 | NA |
25 | ➜ | 1/AA/460:462,1/AA/470:471 | NA |
26 | ➜ | 1/AA/504:511,1/AA/540:541 | NA |
27 | ➜ | 1/AA/515:521,1/AA/528:536 | NA |
28 | ➜ | 1/AA/569:575,1/AA/880:881 | NA |
29 | ➜ | 1/AA/580:584,1/AA/757:761 | NA |
30 | ➜ | 1/AA/594:596,1/AA/644:645 | NA |
31 | ➜ | 1/AA/597:598,1/AA/640:643 | NA |
32 | ➜ | 1/AA/605:612,1/AA/628:633 | NA |
33 | ➜ | 1/AA/654:655,1/AA/751:754 | NA |
34 | ➜ | 1/AA/658:659,1/AA/746:748 | NA |
35 | ➜ | 1/AA/662:666,1/AA/740:743 | NA |
36 | ➜ | 1/AA/673:678,1/AA/712:717 | NA |
37 | ➜ | 1/AA/683:688,1/AA/699:707 | NA |
38 | ➜ | 1/AA/774:778,1/AA/804:805 | NA |
39 | ➜ | 1/AA/779:783,1/AA/799:803 | NA |
40 | ➜ | 1/AA/887:894,1/AA/905:910 | NA |
41 | ➜ | 1/AA/922:923,1/AA/1393:1395 | NA |
42 | ➜ | 1/AA/925:927,1/AA/1390:1391 | NA |
43 | ➜ | 1/AA/933:935,1/AA/1380:1384 | NA |
44 | ➜ | 1/AA/953:954,1/AA/1226:1228 | NA |
45 | ➜ | 1/AA/993:997,1/AA/1044:1045 | NA |
46 | ➜ | 1/AA/998:999,1/AA/1041:1043 | NA |
47 | ➜ | 1/AA/1048:1050,1/AA/1208:1209 | NA |
48 | ➜ | 1/AA/1052:1056,1/AA/1204:1206 | NA |
49 | ➜ | 1/AA/1057:1058,1/AA/1199:1203 | NA |
50 | ➜ | 1/AA/1060:1061,1/AA/1195:1197 | NA |
51 | ➜ | 1/AA/1061:1063,1/AA/1193:1195 | NA |
52 | ➜ | 1/AA/1124:1128,1/AA/1144:1149 | NA |
53 | ➜ | 1/AA/1129:1132,1/AA/1142:1143 | NA |
54 | ➜ | 1/AA/1158:1161,1/AA/1175:1181 | NA |
55 | ➜ | 1/AA/1247:1253,1/AA/1284:1290 | NA |
56 | ➜ | 1/AA/1255:1258,1/AA/1277:1282 | NA |
57 | ➜ | 1/AA/1259:1263,1/AA/1272:1276 | NA |
58 | ➜ | 1/AA/1303:1308,1/AA/1329:1334 | NA |
59 | ➜ | 1/AA/1399:1401,1/AA/1501:1504 | NA |
60 | ➜ | 1/AA/1401:1404,1/AA/1497:1501 | NA |
61 | ➜ | 1/AA/1405:1407,1/AA/1494:1496 | NA |
62 | ➜ | 1/AA/1407:1409,1/AA/1491:1494 | NA |
63 | ➜ | 1/AA/1412:1414,1/AA/1486:1488 | NA |
64 | ➜ | 1/AA/1416:1419,1/AA/1481:1484 | NA |
65 | ➜ | 1/AA/1430:1435,1/AA/1466:1470 | NA |
66 | ➜ | 1/AA/1440:1442,1/AA/1460:1461 | NA |
67 | ➜ | 1/AA/1445:1448,1/AA/1455:1457 | NA |
68 | ➜ | 1/AV/30:32,1/AV/40:42 | NA |
69 | ➜ | 1/B7/17:18,1/B7/65:67 | NA |
70 | ➜ | 1/B7/23:28,1/B7/56:60 | NA |
71 | ➜ | 1/B7/30:31,1/B7/51:54 | NA |
72 | ➜ | 1/B7/34:38,1/B7/44:48 | NA |
73 | ➜ | 1/B7/71:79,1/B7/97:105 | NA |
74 | ➜ | 1/B8/24:30,1/B8/510:516 | NA |
75 | ➜ | 1/B8/36:37,1/B8/442:444 | NA |
76 | ➜ | 1/B8/43:44,1/B8/434:436 | NA |
77 | ➜ | 1/B8/81:85,1/B8/97:105 | NA |
78 | ➜ | 1/B8/183:184,1/B8/212:214 | NA |
79 | ➜ | 1/B8/188:194,1/B8/201:208 | NA |
80 | ➜ | 1/B8/239:245,1/B8/253:258 | NA |
81 | ➜ | 1/B8/269:271,1/B8/366:370 | NA |
82 | ➜ | 1/B8/274:281,1/B8/359:363 | NA |
83 | ➜ | 1/B8/293:295,1/B8/343:347 | NA |
84 | ➜ | 1/B8/481:484,1/B8/496:509 | NA |
85 | ➜ | 1/B8/536:539,1/B8/554:557 | NA |
86 | ➜ | 1/B8/564:566,1/B8/575:577 | NA |
87 | ➜ | 1/B8/606:610,1/B8/618:622 | NA |
88 | ➜ | 1/B8/672:674,1/B8/806:808 | NA |
89 | ➜ | 1/B8/674:678,1/B8/799:806 | NA |
90 | ➜ | 1/B8/697:698,1/B8/763:765 | NA |
91 | ➜ | 1/B8/702:703,1/B8/728:730 | NA |
92 | ➜ | 1/B8/703:707,1/B8/724:728 | NA |
93 | ➜ | 1/B8/738:740,1/B8/757:758 | NA |
94 | ➜ | 1/B8/775:777,1/B8/787:791 | NA |
95 | ➜ | 1/B8/837:838,1/B8/940:942 | NA |
96 | ➜ | 1/B8/844:848,1/B8/930:934 | NA |
97 | ➜ | 1/B8/850:851,1/B8/926:928 | NA |
98 | ➜ | 1/B8/856:858,1/B8/919:921 | NA |
99 | ➜ | 1/B8/858:862,1/B8/915:919 | NA |
100 | ➜ | 1/B8/862:863,1/B8/913:915 | NA |
101 | ➜ | 1/B8/864:868,1/B8/909:912 | NA |
102 | ➜ | 1/B8/870:872,1/B8/905:907 | NA |
103 | ➜ | 1/B8/875:879,1/B8/898:902 | NA |
104 | ➜ | 1/B8/880:883,1/B8/893:897 | NA |
105 | ➜ | 1/B8/994:996,1/B8/1159:1160 | NA |
106 | ➜ | 1/B8/998:1002,1/B8/1153:1157 | NA |
107 | ➜ | 1/B8/1004:1011,1/B8/1150:1151 | NA |
108 | ➜ | 1/B8/1011:1013,1/B8/1149:1150 | NA |
109 | ➜ | 1/B8/1018:1024,1/B8/1140:1144 | NA |
110 | ➜ | 1/B8/1024:1030,1/B8/1124:1140 | NA |
111 | ➜ | 1/B8/1031:1034,1/B8/1121:1123 | NA |
112 | ➜ | 1/B8/1038:1041,1/B8/1114:1117 | NA |
113 | ➜ | 1/B8/1043:1051,1/B8/1108:1112 | NA |
114 | ➜ | 1/B8/1059:1062,1/B8/1076:1079 | NA |
115 | ➜ | 1/B8/1087:1090,1/B8/1101:1102 | NA |
116 | ➜ | 1/B8/1196:1198,1/B8/1247:1250 | NA |
117 | ➜ | 1/B8/1202:1206,1/B8/1240:1243 | NA |
118 | ➜ | 1/B8/1208:1215,1/B8/1234:1238 | NA |
119 | ➜ | 1/B8/1262:1269,1/B8/2011:2017 | NA |
120 | ➜ | 1/B8/1310:1313,1/B8/1603:1604 | NA |
121 | ➜ | 1/B8/1319:1323,1/B8/1331:1333 | NA |
122 | ➜ | 1/B8/1351:1355,1/B8/1376:1380 | NA |
123 | ➜ | 1/B8/1357:1361,1/B8/1370:1374 | NA |
124 | ➜ | 1/B8/1415:1416,1/B8/1582:1587 | NA |
125 | ➜ | 1/B8/1417:1421,1/B8/1577:1581 | NA |
126 | ➜ | 1/B8/1432:1435,1/B8/1557:1561 | NA |
127 | ➜ | 1/B8/1437:1440,1/B8/1551:1555 | NA |
128 | ➜ | 1/B8/1468:1471,1/B8/1520:1524 | NA |
129 | ➜ | 1/B8/1474:1478,1/B8/1513:1517 | NA |
130 | ➜ | 1/B8/1481:1482,1/B8/1507:1510 | NA |
131 | ➜ | 1/B8/1489:1491,1/B8/1499:1500 | NA |
132 | ➜ | 1/B8/1526:1529,1/B8/1542:1546 | NA |
133 | ➜ | 1/B8/1651:1656,1/B8/2004:2006 | NA |
134 | ➜ | 1/B8/1663:1665,1/B8/1995:1997 | NA |
135 | ➜ | 1/B8/1666:1669,1/B8/1993:1994 | NA |
136 | ➜ | 1/B8/1669:1674,1/B8/1990:1993 | NA |
137 | ➜ | 1/B8/1686:1691,1/B8/1696:1702 | NA |
138 | ➜ | 1/B8/1712:1718,1/B8/1742:1746 | NA |
139 | ➜ | 1/B8/1720:1724,1/B8/1736:1740 | NA |
140 | ➜ | 1/B8/1727:1728,1/B8/1731:1733 | NA |
141 | ➜ | 1/B8/1770:1771,1/B8/1980:1982 | NA |
142 | ➜ | 1/B8/1798:1804,1/B8/1813:1821 | NA |
143 | ➜ | 1/B8/1837:1840,1/B8/1902:1903 | NA |
144 | ➜ | 1/B8/1841:1842,1/B8/1898:1901 | NA |
145 | ➜ | 1/B8/1846:1849,1/B8/1893:1894 | NA |
146 | ➜ | 1/B8/1864:1867,1/B8/1874:1878 | NA |
147 | ➜ | 1/B8/1933:1934,1/B8/1964:1967 | NA |
148 | ➜ | 1/B8/1934:1945,1/B8/1961:1964 | NA |
149 | ➜ | 1/B8/2050:2052,1/B8/2617:2618 | NA |
150 | ➜ | 1/B8/2054:2056,1/B8/2612:2615 | NA |
151 | ➜ | 1/B8/2067:2069,1/B8/2442:2443 | NA |
152 | ➜ | 1/B8/2070:2071,1/B8/2438:2441 | NA |
153 | ➜ | 1/B8/2081:2083,1/B8/2236:2239 | NA |
154 | ➜ | 1/B8/2085:2087,1/B8/2232:2234 | NA |
155 | ➜ | 1/B8/2103:2105,1/B8/2184:2186 | NA |
156 | ➜ | 1/B8/2108:2110,1/B8/2179:2181 | NA |
157 | ➜ | 1/B8/2110:2122,1/B8/2176:2179 | NA |
158 | ➜ | 1/B8/2202:2204,1/B8/2220:2221 | NA |
159 | ➜ | 1/B8/2297:2299,1/B8/2317:2321 | NA |
160 | ➜ | 1/B8/2350:2353,1/B8/2364:2367 | NA |
161 | ➜ | 1/B8/2401:2403,1/B8/2414:2415 | NA |
162 | ➜ | 1/B8/2453:2454,1/B8/2498:2500 | NA |
163 | ➜ | 1/B8/2454:2455,1/B8/2496:2498 | NA |
164 | ➜ | 1/B8/2457:2459,1/B8/2493:2494 | NA |
165 | ➜ | 1/B8/2459:2461,1/B8/2489:2493 | NA |
166 | ➜ | 1/B8/2466:2470,1/B8/2480:2484 | NA |
167 | ➜ | 1/B8/2507:2508,1/B8/2580:2582 | NA |
168 | ➜ | 1/B8/2510:2512,1/B8/2574:2578 | NA |
169 | ➜ | 1/B8/2512:2513,1/B8/2571:2574 | NA |
170 | ➜ | 1/B8/2522:2523,1/B8/2540:2543 | NA |
171 | ➜ | 1/B8/2591:2592,1/B8/2601:2603 | NA |
172 | ➜ | 1/B8/2636:2640,1/B8/2774:2782 | NA |
173 | ➜ | 1/B8/2652:2658,1/B8/2663:2668 | NA |
174 | ➜ | 1/B8/2680:2684,1/B8/2725:2727 | NA |
175 | ➜ | 1/B8/2687:2691,1/B8/2718:2722 | NA |
176 | ➜ | 1/B8/2695:2696,1/B8/2711:2714 | NA |
177 | ➜ | 1/B8/2737:2742,1/B8/2762:2767 | NA |
178 | ➜ | 1/B8/2806:2811,1/B8/2889:2892 | NA |
179 | ➜ | 1/B8/2838:2839,1/B8/2878:2880 | NA |
180 | ➜ | 1/B8/2843:2846,1/B8/2870:2874 | NA |
181 | ➜ | 1/B8/2847:2852,1/B8/2865:2869 | NA |
Problematic loops
No problematic loops
Valid loops
# | loop id | location | motif |
---|---|---|---|
1 | ➜ | 1/AA/12:22 | NA |
2 | ➜ | 1/AA/83:86 | NA |
3 | ➜ | 1/AA/158:163 | NA |
4 | ➜ | 1/AA/186:191 | NA |
5 | ➜ | 1/AA/207:212 | NA |
6 | ➜ | 1/AA/259:267 | NA |
7 | ➜ | 1/AA/296:301 | NA |
8 | ➜ | 1/AA/320:333 | NA |
9 | ➜ | 1/AA/342:347 | NA |
10 | ➜ | 1/AA/379:384 | NA |
11 | ➜ | 1/AA/419:424 | NA |
12 | ➜ | 1/AA/462:470 | NA |
13 | ➜ | 1/AA/522:527 | NA |
14 | ➜ | 1/AA/617:623 | NA |
15 | ➜ | 1/AA/689:698 | NA |
16 | ➜ | 1/AA/726:731 | NA |
17 | ➜ | 1/AA/786:796 | NA |
18 | ➜ | 1/AA/840:846 | NA |
19 | ➜ | 1/AA/862:867 | NA |
20 | ➜ | 1/AA/897:902 | NA |
21 | ➜ | 1/AA/963:972 | NA |
22 | ➜ | 1/AA/1012:1017 | NA |
23 | ➜ | 1/AA/1028:1033 | NA |
24 | ➜ | 1/AA/1076:1081 | NA |
25 | ➜ | 1/AA/1089:1096 | NA |
26 | ➜ | 1/AA/1134:1140 | NA |
27 | ➜ | 1/AA/1165:1171 | NA |
28 | ➜ | 1/AA/1265:1270 | NA |
29 | ➜ | 1/AA/1314:1323 | NA |
30 | ➜ | 1/AA/1356:1366 | NA |
31 | ➜ | 1/AA/1449:1454 | NA |
32 | ➜ | 1/AA/1515:1520 | NA |
33 | ➜ | 1/AV/13:23 | NA |
34 | ➜ | 1/AV/32:40 | NA |
35 | ➜ | 1/AV/54:62 | NA |
36 | ➜ | 1/B7/38:44 | NA |
37 | ➜ | 1/B7/86:90 | NA |
38 | ➜ | 1/B8/59:68 | NA |
39 | ➜ | 1/B8/87:95 | NA |
40 | ➜ | 1/B8/123:128 | NA |
41 | ➜ | 1/B8/137:142 | NA |
42 | ➜ | 1/B8/158:168 | NA |
43 | ➜ | 1/B8/194:201 | NA |
44 | ➜ | 1/B8/225:230 | NA |
45 | ➜ | 1/B8/246:252 | NA |
46 | ➜ | 1/B8/305:312 | NA |
47 | ➜ | 1/B8/319:323 | NA |
48 | ➜ | 1/B8/327:335 | NA |
49 | ➜ | 1/B8/382:392 | NA |
50 | ➜ | 1/B8/410:417 | NA |
51 | ➜ | 1/B8/462:467 | NA |
52 | ➜ | 1/B8/487:493 | NA |
53 | ➜ | 1/B8/543:550 | NA |
54 | ➜ | 1/B8/566:575 | NA |
55 | ➜ | 1/B8/611:617 | NA |
56 | ➜ | 1/B8/629:634 | NA |
57 | ➜ | 1/B8/641:647 | NA |
58 | ➜ | 1/B8/712:719 | NA |
59 | ➜ | 1/B8/744:753 | NA |
60 | ➜ | 1/B8/779:785 | NA |
61 | ➜ | 1/B8/826:831 | NA |
62 | ➜ | 1/B8/885:891 | NA |
63 | ➜ | 1/B8/955:962 | NA |
64 | ➜ | 1/B8/978:985 | NA |
65 | ➜ | 1/B8/1064:1074 | NA |
66 | ➜ | 1/B8/1092:1099 | NA |
67 | ➜ | 1/B8/1172:1177 | NA |
68 | ➜ | 1/B8/1222:1227 | NA |
69 | ➜ | 1/B8/1281:1289 | NA |
70 | ➜ | 1/B8/1324:1330 | NA |
71 | ➜ | 1/B8/1363:1368 | NA |
72 | ➜ | 1/B8/1389:1398 | NA |
73 | ➜ | 1/B8/1450:1461 | NA |
74 | ➜ | 1/B8/1492:1498 | NA |
75 | ➜ | 1/B8/1533:1538 | NA |
76 | ➜ | 1/B8/1565:1568 | NA |
77 | ➜ | 1/B8/1612:1619 | NA |
78 | ➜ | 1/B8/1630:1636 | NA |
79 | ➜ | 1/B8/1691:1696 | NA |
80 | ➜ | 1/B8/1728:1731 | NA |
81 | ➜ | 1/B8/1752:1756 | NA |
82 | ➜ | 1/B8/1777:1787 | NA |
83 | ➜ | 1/B8/1806:1811 | NA |
84 | ➜ | 1/B8/1868:1873 | NA |
85 | ➜ | 1/B8/1910:1920 | NA |
86 | ➜ | 1/B8/1949:1957 | NA |
87 | ➜ | 1/B8/2027:2036 | NA |
88 | ➜ | 1/B8/2143:2148 | NA |
89 | ➜ | 1/B8/2209:2215 | NA |
90 | ➜ | 1/B8/2248:2256 | NA |
91 | ➜ | 1/B8/2264:2276 | NA |
92 | ➜ | 1/B8/2303:2313 | NA |
93 | ➜ | 1/B8/2324:2331 | NA |
94 | ➜ | 1/B8/2356:2361 | NA |
95 | ➜ | 1/B8/2374:2379 | NA |
96 | ➜ | 1/B8/2404:2413 | NA |
97 | ➜ | 1/B8/2471:2479 | NA |
98 | ➜ | 1/B8/2528:2535 | NA |
99 | ➜ | 1/B8/2551:2557 | NA |
100 | ➜ | 1/B8/2594:2599 | NA |
101 | ➜ | 1/B8/2658:2663 | NA |
102 | ➜ | 1/B8/2701:2706 | NA |
103 | ➜ | 1/B8/2745:2759 | NA |
104 | ➜ | 1/B8/2796:2800 | NA |
105 | ➜ | 1/B8/2819:2827 | NA |
106 | ➜ | 1/B8/2856:2861 | NA |
Problematic loops
No problematic loops
Valid loops
# | loop id | location | motif |
---|---|---|---|
1 | ➜ | 1/AA/46:47,1/AA/361:367,1/AA/393:395 | NA |
2 | ➜ | 1/AA/586:588,1/AA/651:654,1/AA/754:755 | NA |
3 | ➜ | 1/AA/672:673,1/AA/717:725,1/AA/732:734 | NA |
4 | ➜ | 1/AA/826:829,1/AA/857:861,1/AA/868:874 | NA |
5 | ➜ | 1/AA/936:939,1/AA/1344:1350,1/AA/1372:1379 | NA |
6 | ➜ | 1/AA/943:946,1/AA/1235:1237,1/AA/1337:1340 | NA |
7 | ➜ | 1/AA/955:962,1/AA/973:984,1/AA/1221:1225 | NA |
8 | ➜ | 1/AA/990:993,1/AA/1045:1047,1/AA/1210:1215 | NA |
9 | ➜ | 1/AA/1003:1006,1/AA/1023:1027,1/AA/1034:1037 | NA |
10 | ➜ | 1/AA/1063:1068,1/AA/1107:1113,1/AA/1187:1193 | NA |
11 | ➜ | 1/AA/1073:1074,1/AA/1083:1087,1/AA/1098:1102 | NA |
12 | ➜ | 1/AA/1116:1118,1/AA/1155:1158,1/AA/1181:1184 | NA |
13 | ➜ | 1/AA/1237:1241,1/AA/1296:1303,1/AA/1334:1337 | NA |
14 | ➜ | 1/B7/10:16,1/B7/68:70,1/B7/106:110 | NA |
15 | ➜ | 1/B8/30:31,1/B8/474:481,1/B8/509:510 | NA |
16 | ➜ | 1/B8/56:57,1/B8/70:76,1/B8/110:114 | NA |
17 | ➜ | 1/B8/683:689,1/B8/773:775,1/B8/791:794 | NA |
18 | ➜ | 1/B8/698:700,1/B8/732:736,1/B8/760:763 | NA |
19 | ➜ | 1/B8/1055:1057,1/B8/1081:1087,1/B8/1102:1104 | NA |
20 | ➜ | 1/B8/1298:1303,1/B8/1625:1627,1/B8/1639:1642 | NA |
21 | ➜ | 1/B8/1306:1309,1/B8/1605:1611,1/B8/1620:1622 | NA |
22 | ➜ | 1/B8/1344:1350,1/B8/1381:1385,1/B8/1402:1403 | NA |
23 | ➜ | 1/B8/2091:2093,1/B8/2196:2200,1/B8/2223:2228 | NA |
24 | ➜ | 1/B8/2295:2297,1/B8/2321:2323,1/B8/2332:2337 | NA |
25 | ➜ | 1/B8/2517:2520,1/B8/2545:2547,1/B8/2561:2567 | NA |
26 | ➜ | 1/B8/2789:2791,1/B8/2805:2806,1/B8/2892:2894 | NA |
27 | ➜ | 1/B8/2812:2815,1/B8/2831:2836,1/B8/2882:2888 | NA |
Problematic loops
No problematic loops
Coloring options: