Valid loops

#loop idlocationmotif
11/AA/30:32,1/AA/552:553NA
21/AA/44:45,1/AA/396:398NA
31/AA/47:52,1/AA/359:361NA
41/AA/54:56,1/AA/356:357NA
51/AA/63:66,1/AA/103:104NA
61/AA/67:69,1/AA/99:102NA
71/AA/70:73,1/AA/97:98NA
81/AA/75:76,1/AA/93:95NA
91/AA/128:131,1/AA/231:233NA
101/AA/132:136,1/AA/227:230NA
111/AA/144:146,1/AA/176:178NA
121/AA/147:153,1/AA/168:175NA
131/AA/203:206,1/AA/213:214NA
141/AA/242:247,1/AA/277:284NA
151/AA/249:253,1/AA/273:275NA
161/AA/292:293,1/AA/304:308NA
171/AA/367:369,1/AA/392:393NA
181/AA/371:376,1/AA/387:390NA
191/AA/409:416,1/AA/427:433NA
201/AA/440:442,1/AA/492:497NA
211/AA/446:450,1/AA/483:488NA
221/AA/450:455,1/AA/477:483NA
231/AA/504:511,1/AA/540:541NA
241/AA/515:521,1/AA/528:536NA
251/AA/569:575,1/AA/880:881NA
261/AA/580:584,1/AA/757:761NA
271/AA/594:596,1/AA/644:645NA
281/AA/597:598,1/AA/640:643NA
291/AA/605:612,1/AA/628:633NA
301/AA/654:655,1/AA/751:754NA
311/AA/658:660,1/AA/745:748NA
321/AA/662:666,1/AA/740:743NA
331/AA/673:679,1/AA/711:717NA
341/AA/684:688,1/AA/699:706NA
351/AA/774:778,1/AA/804:805NA
361/AA/779:783,1/AA/799:803NA
371/AA/831:833,1/AA/853:855NA
381/AA/833:835,1/AA/851:853NA
391/AA/887:894,1/AA/905:910NA
401/AA/922:923,1/AA/1393:1395NA
411/AA/925:927,1/AA/1390:1391NA
421/AA/933:936,1/AA/1379:1384NA
431/AA/953:954,1/AA/1226:1228NA
441/AA/993:997,1/AA/1044:1045NA
451/AA/998:999,1/AA/1041:1043NA
461/AA/1048:1050,1/AA/1208:1209NA
471/AA/1051:1056,1/AA/1204:1207NA
481/AA/1057:1058,1/AA/1199:1203NA
491/AA/1060:1061,1/AA/1195:1197NA
501/AA/1061:1063,1/AA/1193:1195NA
511/AA/1124:1128,1/AA/1144:1149NA
521/AA/1129:1132,1/AA/1142:1143NA
531/AA/1158:1161,1/AA/1175:1181NA
541/AA/1247:1253,1/AA/1284:1290NA
551/AA/1255:1258,1/AA/1277:1282NA
561/AA/1259:1263,1/AA/1272:1276NA
571/AA/1303:1309,1/AA/1328:1334NA
581/AA/1399:1401,1/AA/1501:1504NA
591/AA/1401:1404,1/AA/1497:1501NA
601/AA/1405:1407,1/AA/1494:1496NA
611/AA/1407:1409,1/AA/1491:1494NA
621/AA/1411:1415,1/AA/1485:1489NA
631/AA/1416:1420,1/AA/1480:1484NA
641/AA/1429:1435,1/AA/1466:1471NA
651/AA/1439:1442,1/AA/1460:1462NA
661/AA/1445:1448,1/AA/1455:1457NA
671/BA/24:30,1/BA/510:516NA
681/BA/36:37,1/BA/442:444NA
691/BA/43:44,1/BA/434:436NA
701/BA/75:76,1/BA/110:112NA
711/BA/82:85,1/BA/97:104NA
721/BA/183:184,1/BA/212:214NA
731/BA/188:194,1/BA/201:208NA
741/BA/239:245,1/BA/253:258NA
751/BA/269:271,1/BA/366:370NA
761/BA/274:281,1/BA/359:363NA
771/BA/293:295,1/BA/343:347NA
781/BA/481:484,1/BA/496:509NA
791/BA/536:539,1/BA/554:557NA
801/BA/606:610,1/BA/618:622NA
811/BA/672:674,1/BA/806:808NA
821/BA/674:678,1/BA/799:806NA
831/BA/697:698,1/BA/763:765NA
841/BA/702:707,1/BA/724:730NA
851/BA/738:741,1/BA/756:758NA
861/BA/775:777,1/BA/787:791NA
871/BA/844:848,1/BA/930:934NA
881/BA/848:851,1/BA/926:930NA
891/BA/856:862,1/BA/915:921NA
901/BA/862:863,1/BA/913:915NA
911/BA/864:869,1/BA/908:912NA
921/BA/870:872,1/BA/905:907NA
931/BA/875:879,1/BA/898:902NA
941/BA/880:882,1/BA/894:897NA
951/BA/994:996,1/BA/1159:1160NA
961/BA/998:1002,1/BA/1153:1157NA
971/BA/1004:1011,1/BA/1150:1151NA
981/BA/1011:1013,1/BA/1149:1150NA
991/BA/1018:1024,1/BA/1140:1144NA
1001/BA/1024:1030,1/BA/1124:1140NA
1011/BA/1031:1034,1/BA/1121:1123NA
1021/BA/1038:1041,1/BA/1114:1117NA
1031/BA/1057:1062,1/BA/1076:1081NA
1041/BA/1196:1198,1/BA/1247:1250NA
1051/BA/1202:1206,1/BA/1240:1243NA
1061/BA/1208:1215,1/BA/1234:1238NA
1071/BA/1262:1269,1/BA/2011:2017NA
1081/BA/1310:1313,1/BA/1603:1604NA
1091/BA/1319:1323,1/BA/1331:1333NA
1101/BA/1351:1355,1/BA/1376:1380NA
1111/BA/1357:1361,1/BA/1370:1374NA
1121/BA/1415:1416,1/BA/1582:1587NA
1131/BA/1417:1421,1/BA/1577:1581NA
1141/BA/1432:1435,1/BA/1557:1561NA
1151/BA/1437:1440,1/BA/1551:1555NA
1161/BA/1468:1471,1/BA/1520:1524NA
1171/BA/1474:1478,1/BA/1513:1517NA
1181/BA/1481:1482,1/BA/1507:1510NA
1191/BA/1489:1491,1/BA/1499:1500NA
1201/BA/1526:1529,1/BA/1542:1546NA
1211/BA/1651:1656,1/BA/2004:2006NA
1221/BA/1663:1665,1/BA/1995:1997NA
1231/BA/1666:1669,1/BA/1993:1994NA
1241/BA/1669:1674,1/BA/1990:1993NA
1251/BA/1686:1691,1/BA/1696:1702NA
1261/BA/1712:1718,1/BA/1742:1746NA
1271/BA/1720:1726,1/BA/1734:1740NA
1281/BA/1770:1771,1/BA/1980:1982NA
1291/BA/1798:1804,1/BA/1813:1821NA
1301/BA/1837:1840,1/BA/1902:1903NA
1311/BA/1841:1842,1/BA/1898:1901NA
1321/BA/1846:1849,1/BA/1893:1894NA
1331/BA/1864:1867,1/BA/1874:1878NA
1341/BA/1933:1934,1/BA/1964:1967NA
1351/BA/1934:1945,1/BA/1961:1964NA
1361/BA/2050:2052,1/BA/2617:2618NA
1371/BA/2054:2056,1/BA/2612:2615NA
1381/BA/2066:2071,1/BA/2438:2444NA
1391/BA/2081:2084,1/BA/2235:2239NA
1401/BA/2085:2087,1/BA/2232:2234NA
1411/BA/2103:2105,1/BA/2184:2186NA
1421/BA/2108:2110,1/BA/2179:2181NA
1431/BA/2202:2205,1/BA/2219:2221NA
1441/BA/2350:2353,1/BA/2364:2367NA
1451/BA/2401:2403,1/BA/2414:2415NA
1461/BA/2453:2454,1/BA/2498:2500NA
1471/BA/2454:2455,1/BA/2496:2498NA
1481/BA/2456:2459,1/BA/2493:2495NA
1491/BA/2459:2461,1/BA/2489:2493NA
1501/BA/2466:2470,1/BA/2480:2484NA
1511/BA/2507:2508,1/BA/2580:2582NA
1521/BA/2510:2512,1/BA/2574:2578NA
1531/BA/2512:2513,1/BA/2571:2574NA
1541/BA/2522:2523,1/BA/2540:2543NA
1551/BA/2591:2592,1/BA/2601:2603NA
1561/BA/2636:2640,1/BA/2774:2782NA
1571/BA/2680:2684,1/BA/2725:2727NA
1581/BA/2687:2691,1/BA/2718:2722NA
1591/BA/2695:2696,1/BA/2711:2714NA
1601/BA/2737:2742,1/BA/2762:2767NA
1611/BA/2806:2811,1/BA/2889:2892NA
1621/BA/2838:2839,1/BA/2878:2880NA
1631/BA/2843:2846,1/BA/2870:2874NA
1641/BA/2847:2853,1/BA/2864:2869NA
1651/BB/17:18,1/BB/65:67NA
1661/BB/23:28,1/BB/56:60NA
1671/BB/30:31,1/BB/51:54NA
1681/BB/34:38,1/BB/44:48NA
1691/BB/71:79,1/BB/97:105NA

Problematic loops

#loop idProblemSequence
1CCA,UGG
21043, 1044, 1045, 1046, 1047, 1048, 1049, 1050, 1051, 1052, 1107, 1108, 1109, 1110, 1111, 1112
32110, 2111, 2112, 2113, 2114, 2115, 2116, 2117, 2118, 2119, 2120, 2178, 2179
42124, 2125, 2126, 2127, 2161, 2162, 2163, 2164, 2165, 2166, 2167, 2168, 2169, 2170, 2171, 2172, 2173, 2174

Valid loops

#loop idlocationmotif
11/A1/13:22NA
21/A1/31:39NA
31/A1/53:61NA
41/A3/13:23NA
51/A3/32:40NA
61/A3/54:62NA
71/AA/11:23NA
81/AA/83:86NA
91/AA/158:163NA
101/AA/186:191NA
111/AA/207:212NA
121/AA/259:267NA
131/AA/296:301NA
141/AA/320:333NA
151/AA/342:347NA
161/AA/379:384NA
171/AA/419:424NA
181/AA/460:472NA
191/AA/522:527NA
201/AA/617:623NA
211/AA/689:698NA
221/AA/726:731NA
231/AA/786:796NA
241/AA/840:846NA
251/AA/862:867NA
261/AA/897:902NA
271/AA/963:972NA
281/AA/1012:1017NA
291/AA/1028:1033NA
301/AA/1076:1081NA
311/AA/1089:1096NA
321/AA/1134:1140NA
331/AA/1165:1171NA
341/AA/1265:1270NA
351/AA/1314:1323NA
361/AA/1356:1366NA
371/AA/1449:1454NA
381/AA/1515:1520NA
391/BA/59:68NA
401/BA/86:96NA
411/BA/123:128NA
421/BA/137:142NA
431/BA/158:168NA
441/BA/194:201NA
451/BA/225:230NA
461/BA/246:252NA
471/BA/305:312NA
481/BA/319:323NA
491/BA/327:335NA
501/BA/382:392NA
511/BA/410:417NA
521/BA/462:467NA
531/BA/487:493NA
541/BA/543:550NA
551/BA/564:577NA
561/BA/611:617NA
571/BA/629:634NA
581/BA/641:647NA
591/BA/712:719NA
601/BA/744:753NA
611/BA/779:785NA
621/BA/826:831NA
631/BA/955:962NA
641/BA/978:985NA
651/BA/1064:1074NA
661/BA/1092:1099NA
671/BA/1172:1177NA
681/BA/1222:1227NA
691/BA/1281:1289NA
701/BA/1324:1330NA
711/BA/1363:1368NA
721/BA/1389:1398NA
731/BA/1450:1461NA
741/BA/1492:1498NA
751/BA/1533:1538NA
761/BA/1565:1568NA
771/BA/1612:1619NA
781/BA/1630:1636NA
791/BA/1691:1696NA
801/BA/1727:1733NA
811/BA/1752:1756NA
821/BA/1777:1787NA
831/BA/1806:1811NA
841/BA/1868:1873NA
851/BA/1910:1920NA
861/BA/1949:1957NA
871/BA/2027:2036NA
881/BA/2143:2148NA
891/BA/2209:2215NA
901/BA/2248:2256NA
911/BA/2264:2276NA
921/BA/2303:2313NA
931/BA/2323:2332NA
941/BA/2356:2361NA
951/BA/2374:2379NA
961/BA/2404:2413NA
971/BA/2471:2479NA
981/BA/2528:2535NA
991/BA/2551:2557NA
1001/BA/2594:2599NA
1011/BA/2652:2668NA
1021/BA/2701:2706NA
1031/BA/2745:2759NA
1041/BA/2796:2800NA
1051/BA/2819:2827NA
1061/BA/2856:2861NA
1071/BB/38:44NA
1081/BB/86:90NA

Problematic loops

#loop idProblemSequence
1885, 886, 887, 888, 889, 890, 891

Valid loops

#loop idlocationmotif
11/AA/46:47,1/AA/361:367,1/AA/393:395NA
21/AA/586:588,1/AA/651:654,1/AA/754:755NA
31/AA/672:673,1/AA/717:725,1/AA/732:734NA
41/AA/826:829,1/AA/857:861,1/AA/868:874NA
51/AA/943:946,1/AA/1235:1237,1/AA/1337:1340NA
61/AA/955:962,1/AA/973:984,1/AA/1221:1225NA
71/AA/990:993,1/AA/1045:1047,1/AA/1210:1215NA
81/AA/1003:1006,1/AA/1023:1027,1/AA/1034:1037NA
91/AA/1063:1068,1/AA/1107:1113,1/AA/1187:1193NA
101/AA/1073:1074,1/AA/1083:1087,1/AA/1098:1102NA
111/AA/1116:1118,1/AA/1155:1158,1/AA/1181:1184NA
121/AA/1237:1242,1/AA/1295:1303,1/AA/1334:1337NA
131/BA/30:31,1/BA/474:481,1/BA/509:510NA
141/BA/56:57,1/BA/70:75,1/BA/112:114NA
151/BA/683:689,1/BA/773:775,1/BA/791:794NA
161/BA/698:700,1/BA/732:736,1/BA/760:763NA
171/BA/1055:1057,1/BA/1081:1090,1/BA/1101:1104NA
181/BA/1298:1303,1/BA/1625:1627,1/BA/1639:1642NA
191/BA/1306:1309,1/BA/1605:1611,1/BA/1620:1622NA
201/BA/2091:2093,1/BA/2196:2200,1/BA/2223:2228NA
211/BA/2295:2299,1/BA/2317:2323,1/BA/2332:2337NA
221/BA/2517:2520,1/BA/2545:2547,1/BA/2561:2567NA
231/BA/2789:2791,1/BA/2805:2806,1/BA/2892:2894NA
241/BA/2812:2815,1/BA/2831:2836,1/BA/2882:2888NA
251/BB/10:16,1/BB/68:70,1/BB/106:110NA

Problematic loops

No problematic loops


Coloring options: