Valid loops

#loop idlocationmotif
11/AA/30:32,1/AA/552:553NA
21/AA/44:45,1/AA/396:398NA
31/AA/47:52,1/AA/359:361NA
41/AA/54:56,1/AA/356:357NA
51/AA/63:66,1/AA/103:104NA
61/AA/67:69,1/AA/99:102NA
71/AA/69:73,1/AA/97:99NA
81/AA/75:76,1/AA/93:95NA
91/AA/76:79,1/AA/90:93NA
101/AA/128:131,1/AA/231:233NA
111/AA/132:136,1/AA/227:230NA
121/AA/144:146,1/AA/176:178NA
131/AA/147:153,1/AA/168:175NA
141/AA/201:203,1/AA/214:216NA
151/AA/203:206,1/AA/213:214NA
161/AA/242:247,1/AA/277:284NA
171/AA/249:252,1/AA/274:275NA
181/AA/292:293,1/AA/304:308NA
191/AA/367:369,1/AA/392:393NA
201/AA/371:375,1/AA/389:390NA
211/AA/375:376,1/AA/387:389NA
221/AA/409:416,1/AA/427:433NA
231/AA/440:442,1/AA/492:497NA
241/AA/446:450,1/AA/483:488NA
251/AA/450:455,1/AA/477:483NA
261/AA/458:462,1/AA/470:474NA
271/AA/504:512,1/AA/539:541NA
281/AA/515:521,1/AA/528:536NA
291/AA/569:575,1/AA/880:881NA
301/AA/580:584,1/AA/757:761NA
311/AA/594:596,1/AA/644:645NA
321/AA/597:598,1/AA/640:643NA
331/AA/605:612,1/AA/628:633NA
341/AA/654:655,1/AA/751:754NA
351/AA/659:660,1/AA/745:747NA
361/AA/662:666,1/AA/740:743NA
371/AA/684:688,1/AA/699:706NA
381/AA/774:778,1/AA/804:805NA
391/AA/779:783,1/AA/799:803NA
401/AA/887:894,1/AA/905:910NA
411/AA/921:923,1/AA/1393:1396NA
421/AA/925:927,1/AA/1390:1391NA
431/AA/933:935,1/AA/1380:1384NA
441/AA/953:954,1/AA/1226:1228NA
451/AA/998:999,1/AA/1041:1043NA
461/AA/1048:1050,1/AA/1208:1209NA
471/AA/1052:1056,1/AA/1204:1206NA
481/AA/1057:1058,1/AA/1199:1203NA
491/AA/1060:1061,1/AA/1195:1197NA
501/AA/1061:1063,1/AA/1193:1195NA
511/AA/1124:1128,1/AA/1144:1149NA
521/AA/1129:1133,1/AA/1141:1143NA
531/AA/1158:1161,1/AA/1175:1181NA
541/AA/1247:1253,1/AA/1284:1290NA
551/AA/1255:1258,1/AA/1277:1282NA
561/AA/1259:1263,1/AA/1272:1276NA
571/AA/1303:1308,1/AA/1329:1334NA
581/AA/1399:1401,1/AA/1501:1504NA
591/AA/1401:1404,1/AA/1497:1501NA
601/AA/1405:1407,1/AA/1494:1496NA
611/AA/1407:1409,1/AA/1491:1494NA
621/AA/1412:1414,1/AA/1486:1488NA
631/AA/1416:1419,1/AA/1481:1484NA
641/AA/1430:1435,1/AA/1466:1470NA
651/AA/1440:1442,1/AA/1460:1461NA
661/AA/1445:1448,1/AA/1455:1457NA
671/BA/24:30,1/BA/510:516NA
681/BA/36:37,1/BA/442:444NA
691/BA/43:44,1/BA/434:436NA
701/BA/81:85,1/BA/97:105NA
711/BA/183:184,1/BA/212:214NA
721/BA/188:194,1/BA/201:208NA
731/BA/239:245,1/BA/253:258NA
741/BA/269:271,1/BA/366:370NA
751/BA/274:281,1/BA/359:363NA
761/BA/293:295,1/BA/343:347NA
771/BA/481:484,1/BA/496:509NA
781/BA/536:539,1/BA/554:557NA
791/BA/564:566,1/BA/575:577NA
801/BA/606:610,1/BA/618:622NA
811/BA/672:674,1/BA/806:808NA
821/BA/674:678,1/BA/799:806NA
831/BA/697:698,1/BA/763:765NA
841/BA/702:703,1/BA/728:730NA
851/BA/703:707,1/BA/724:728NA
861/BA/738:740,1/BA/757:758NA
871/BA/775:777,1/BA/787:791NA
881/BA/844:847,1/BA/933:934NA
891/BA/847:848,1/BA/930:933NA
901/BA/850:851,1/BA/926:928NA
911/BA/856:862,1/BA/915:921NA
921/BA/862:863,1/BA/913:915NA
931/BA/864:868,1/BA/909:912NA
941/BA/870:872,1/BA/905:907NA
951/BA/875:879,1/BA/898:902NA
961/BA/879:883,1/BA/893:898NA
971/BA/994:996,1/BA/1159:1160NA
981/BA/998:1002,1/BA/1153:1157NA
991/BA/1004:1011,1/BA/1150:1151NA
1001/BA/1011:1013,1/BA/1149:1150NA
1011/BA/1018:1024,1/BA/1140:1144NA
1021/BA/1024:1030,1/BA/1124:1140NA
1031/BA/1031:1034,1/BA/1121:1123NA
1041/BA/1038:1041,1/BA/1114:1117NA
1051/BA/1059:1062,1/BA/1076:1079NA
1061/BA/1196:1198,1/BA/1247:1250NA
1071/BA/1202:1206,1/BA/1240:1243NA
1081/BA/1208:1215,1/BA/1234:1238NA
1091/BA/1262:1269,1/BA/2011:2017NA
1101/BA/1310:1313,1/BA/1603:1604NA
1111/BA/1319:1323,1/BA/1331:1333NA
1121/BA/1351:1355,1/BA/1376:1380NA
1131/BA/1357:1361,1/BA/1370:1374NA
1141/BA/1415:1416,1/BA/1582:1587NA
1151/BA/1417:1421,1/BA/1577:1581NA
1161/BA/1432:1435,1/BA/1557:1561NA
1171/BA/1437:1440,1/BA/1551:1555NA
1181/BA/1450:1451,1/BA/1459:1461NA
1191/BA/1468:1471,1/BA/1520:1524NA
1201/BA/1474:1478,1/BA/1513:1517NA
1211/BA/1480:1482,1/BA/1507:1511NA
1221/BA/1489:1491,1/BA/1499:1500NA
1231/BA/1526:1529,1/BA/1542:1546NA
1241/BA/1651:1656,1/BA/2004:2006NA
1251/BA/1663:1665,1/BA/1995:1997NA
1261/BA/1666:1669,1/BA/1993:1994NA
1271/BA/1669:1674,1/BA/1990:1993NA
1281/BA/1686:1691,1/BA/1696:1702NA
1291/BA/1712:1718,1/BA/1742:1746NA
1301/BA/1720:1724,1/BA/1736:1740NA
1311/BA/1770:1771,1/BA/1980:1982NA
1321/BA/1798:1804,1/BA/1813:1821NA
1331/BA/1837:1840,1/BA/1902:1903NA
1341/BA/1841:1842,1/BA/1898:1901NA
1351/BA/1846:1849,1/BA/1893:1894NA
1361/BA/1864:1867,1/BA/1874:1878NA
1371/BA/1933:1934,1/BA/1964:1967NA
1381/BA/1934:1945,1/BA/1961:1964NA
1391/BA/2050:2052,1/BA/2617:2618NA
1401/BA/2054:2056,1/BA/2612:2615NA
1411/BA/2067:2069,1/BA/2442:2443NA
1421/BA/2070:2071,1/BA/2438:2441NA
1431/BA/2081:2083,1/BA/2236:2239NA
1441/BA/2085:2087,1/BA/2232:2234NA
1451/BA/2202:2204,1/BA/2220:2221NA
1461/BA/2350:2353,1/BA/2364:2367NA
1471/BA/2401:2403,1/BA/2414:2415NA
1481/BA/2453:2454,1/BA/2498:2500NA
1491/BA/2454:2455,1/BA/2496:2498NA
1501/BA/2457:2459,1/BA/2493:2494NA
1511/BA/2459:2461,1/BA/2489:2493NA
1521/BA/2466:2470,1/BA/2480:2484NA
1531/BA/2507:2508,1/BA/2580:2582NA
1541/BA/2510:2512,1/BA/2574:2578NA
1551/BA/2512:2513,1/BA/2571:2574NA
1561/BA/2522:2523,1/BA/2540:2543NA
1571/BA/2591:2592,1/BA/2601:2603NA
1581/BA/2636:2640,1/BA/2774:2782NA
1591/BA/2652:2658,1/BA/2663:2668NA
1601/BA/2680:2684,1/BA/2725:2727NA
1611/BA/2687:2691,1/BA/2718:2722NA
1621/BA/2695:2696,1/BA/2711:2714NA
1631/BA/2737:2742,1/BA/2762:2767NA
1641/BA/2806:2811,1/BA/2889:2892NA
1651/BA/2838:2839,1/BA/2878:2880NA
1661/BA/2843:2846,1/BA/2870:2874NA
1671/BA/2847:2852,1/BA/2865:2869NA
1681/BB/17:18,1/BB/65:67NA
1691/BB/23:28,1/BB/56:60NA
1701/BB/30:31,1/BB/51:54NA
1711/BB/34:38,1/BB/44:48NA
1721/BB/71:79,1/BB/97:105NA

Problematic loops

#loop idProblemSequence
1GAU,AUC
2UUG,CAA
3CAG,CUG
4GUG,CAC
51043, 1044, 1045, 1046, 1047, 1048, 1049, 1050, 1051, 1108, 1109, 1110, 1111, 1112
62103, 2104, 2105, 2106, 2183, 2184, 2185, 2186
72106, 2107, 2108, 2181, 2182, 2183
82108, 2109, 2110, 2179, 2180, 2181

Valid loops

#loop idlocationmotif
11/AA/12:22NA
21/AA/79:90NA
31/AA/158:163NA
41/AA/186:191NA
51/AA/207:212NA
61/AA/259:267NA
71/AA/296:301NA
81/AA/320:333NA
91/AA/342:347NA
101/AA/379:384NA
111/AA/419:424NA
121/AA/462:470NA
131/AA/522:527NA
141/AA/617:623NA
151/AA/689:698NA
161/AA/726:731NA
171/AA/786:796NA
181/AA/840:846NA
191/AA/862:867NA
201/AA/897:902NA
211/AA/963:972NA
221/AA/1012:1017NA
231/AA/1028:1033NA
241/AA/1076:1081NA
251/AA/1089:1096NA
261/AA/1134:1140NA
271/AA/1165:1171NA
281/AA/1265:1270NA
291/AA/1314:1323NA
301/AA/1355:1367NA
311/AA/1449:1454NA
321/AA/1515:1520NA
331/BA/59:68NA
341/BA/87:95NA
351/BA/123:128NA
361/BA/136:143NA
371/BA/158:168NA
381/BA/194:201NA
391/BA/225:230NA
401/BA/246:252NA
411/BA/305:312NA
421/BA/319:323NA
431/BA/327:335NA
441/BA/382:392NA
451/BA/410:417NA
461/BA/462:467NA
471/BA/487:493NA
481/BA/543:550NA
491/BA/566:575NA
501/BA/611:617NA
511/BA/629:634NA
521/BA/641:647NA
531/BA/712:719NA
541/BA/744:753NA
551/BA/779:785NA
561/BA/826:831NA
571/BA/955:962NA
581/BA/978:985NA
591/BA/1064:1074NA
601/BA/1092:1099NA
611/BA/1168:1181NA
621/BA/1222:1227NA
631/BA/1281:1289NA
641/BA/1324:1330NA
651/BA/1363:1368NA
661/BA/1389:1398NA
671/BA/1451:1459NA
681/BA/1492:1498NA
691/BA/1533:1538NA
701/BA/1565:1568NA
711/BA/1612:1619NA
721/BA/1630:1636NA
731/BA/1691:1696NA
741/BA/1727:1733NA
751/BA/1752:1756NA
761/BA/1777:1787NA
771/BA/1806:1811NA
781/BA/1868:1873NA
791/BA/1910:1920NA
801/BA/1949:1957NA
811/BA/2027:2036NA
821/BA/2209:2215NA
831/BA/2248:2256NA
841/BA/2264:2276NA
851/BA/2303:2313NA
861/BA/2324:2331NA
871/BA/2356:2361NA
881/BA/2374:2379NA
891/BA/2404:2413NA
901/BA/2471:2479NA
911/BA/2528:2535NA
921/BA/2551:2557NA
931/BA/2594:2599NA
941/BA/2658:2663NA
951/BA/2701:2706NA
961/BA/2745:2759NA
971/BA/2795:2801NA
981/BA/2819:2827NA
991/BA/2856:2861NA
1001/BB/38:44NA
1011/BB/86:90NA

Problematic loops

#loop idProblemSequence
1883, 884, 885, 893
22110, 2133, 2134, 2135, 2136, 2137, 2138, 2139, 2140, 2141, 2142, 2143, 2144, 2145, 2146, 2147, 2148, 2149, 2150, 2151, 2152, 2153, 2154, 2155, 2156, 2157, 2179

Valid loops

#loop idlocationmotif
11/AA/826:829,1/AA/857:861,1/AA/868:874NA
21/AA/936:939,1/AA/1344:1350,1/AA/1372:1379NA
31/AA/943:946,1/AA/1235:1237,1/AA/1337:1340NA
41/AA/954:962,1/AA/973:984,1/AA/1221:1226NA
51/AA/990:997,1/AA/1044:1047,1/AA/1210:1215NA
61/AA/1002:1006,1/AA/1023:1027,1/AA/1034:1038NA
71/AA/1063:1068,1/AA/1107:1113,1/AA/1187:1193NA
81/AA/1116:1118,1/AA/1155:1158,1/AA/1181:1184NA
91/AA/1237:1241,1/AA/1296:1303,1/AA/1334:1337NA
101/BA/683:689,1/BA/773:775,1/BA/791:794NA
111/BA/698:700,1/BA/732:736,1/BA/760:763NA
121/BA/1055:1057,1/BA/1081:1090,1/BA/1101:1104NA
131/BA/1298:1303,1/BA/1625:1627,1/BA/1639:1642NA
141/BA/1306:1309,1/BA/1605:1611,1/BA/1620:1622NA
151/BA/2091:2093,1/BA/2196:2200,1/BA/2223:2228NA
161/BA/2295:2299,1/BA/2317:2323,1/BA/2332:2337NA
171/BA/2517:2520,1/BA/2545:2547,1/BA/2561:2567NA
181/BA/2812:2815,1/BA/2831:2836,1/BA/2882:2888NA
191/BB/10:16,1/BB/68:70,1/BB/106:110NA

Problematic loops

No problematic loops


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