4V8Y Summary
- Structure Title
- 4V8Y Summary
- Authors
- Release Date
- 2014-07-09
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
- Chains
-
- 6 RNA chains from Saccharomyces cerevisiae
- 81 other chains
- Compounds
- 40S RIBOSOMAL PROTEIN S26-A, 40S RIBOSOMAL PROTEIN S27-A, 40S RIBOSOMAL PROTEIN S28-A, 40S RIBOSOMAL PROTEIN S29-A, 40S RIBOSOMAL PROTEIN S30-A, UBIQUITIN-40S RIBOSOMAL PROTEIN S31, GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-LIKE PROTEIN, SUPPRESSOR PROTEIN STM1, 40S RIBOSOMAL PROTEIN S0-A, 40S RIBOSOMAL PROTEIN S1-A, 40S RIBOSOMAL PROTEIN S2, 40S RIBOSOMAL PROTEIN S3, 40S RIBOSOMAL PROTEIN S4-A, 40S RIBOSOMAL PROTEIN S5, 40S RIBOSOMAL PROTEIN S6-A, 40S RIBOSOMAL PROTEIN S7-A, 40S RIBOSOMAL PROTEIN S8-A, 40S RIBOSOMAL PROTEIN S9-A, 40S RIBOSOMAL PROTEIN S10-A, 40S RIBOSOMAL PROTEIN S11-A, 40S RIBOSOMAL PROTEIN S12, 40S RIBOSOMAL PROTEIN S13, 40S RIBOSOMAL PROTEIN S14-A, 40S RIBOSOMAL PROTEIN S15, 40S RIBOSOMAL PROTEIN S16-A, 40S RIBOSOMAL PROTEIN S17-A, 40S RIBOSOMAL PROTEIN S18-A, 40S RIBOSOMAL PROTEIN S19-A, 40S RIBOSOMAL PROTEIN S20, 40S RIBOSOMAL PROTEIN S21-A, 40S RIBOSOMAL PROTEIN S22-A, 40S RIBOSOMAL PROTEIN S23-A, 40S RIBOSOMAL PROTEIN S24-A, 40S RIBOSOMAL PROTEIN S25-A, 18S RIBOSOMAL RNA, 25S RIBOSOMAL RNA, 5S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNA, 60S RIBOSOMAL PROTEIN L2-B, 60S RIBOSOMAL PROTEIN L3, 60S RIBOSOMAL PROTEIN L4-A, 60S RIBOSOMAL PROTEIN L5, 60S RIBOSOMAL PROTEIN L6-A, 60S RIBOSOMAL PROTEIN L7-A, 60S RIBOSOMAL PROTEIN L8-A, 60S RIBOSOMAL PROTEIN L9-A, 60S RIBOSOMAL PROTEIN L10, 60S RIBOSOMAL PROTEIN L11-A, 60S RIBOSOMAL PROTEIN L11-A, 60S RIBOSOMAL PROTEIN L13-A, 60S RIBOSOMAL PROTEIN L14-B, 60S RIBOSOMAL PROTEIN L15-A, 60S RIBOSOMAL PROTEIN L16-A, 60S RIBOSOMAL PROTEIN L17-A, 60S RIBOSOMAL PROTEIN L18-A, 60S RIBOSOMAL PROTEIN L19-B, 60S RIBOSOMAL PROTEIN L20-B, 60S RIBOSOMAL PROTEIN L21-A, 60S RIBOSOMAL PROTEIN L22-A, 60S RIBOSOMAL PROTEIN L23-A, 60S RIBOSOMAL PROTEIN L24-A, 60S RIBOSOMAL PROTEIN L25, 60S RIBOSOMAL PROTEIN L26-A, 60S RIBOSOMAL PROTEIN L27-A, 60S RIBOSOMAL PROTEIN L28, 60S RIBOSOMAL PROTEIN L29, 60S RIBOSOMAL PROTEIN L30, 60S RIBOSOMAL PROTEIN L31-A, 60S RIBOSOMAL PROTEIN L32, 60S RIBOSOMAL PROTEIN L33-A, 60S RIBOSOMAL PROTEIN L34-A, 60S RIBOSOMAL PROTEIN L35-B, 60S RIBOSOMAL PROTEIN L36-A, 60S RIBOSOMAL PROTEIN L37-A, 60S RIBOSOMAL PROTEIN L38, 60S RIBOSOMAL PROTEIN L39, UBIQUITIN-60S RIBOSOMAL PROTEIN L40, 60S RIBOSOMAL PROTEIN L41-B, 60S RIBOSOMAL PROTEIN L42-A, 60S ACIDIC RIBOSOMAL PROTEIN P0, 60S ACIDIC RIBOSOMAL PROTEIN P1, 60S ACIDIC RIBOSOMAL PROTEIN P2, 50S RIBOSOMAL PROTEIN L1, 50S RIBOSOMAL PROTEIN L1, EUKARYOTIC RIBOSOMAL L1_RRNA, EUKARYOTIC TRANSLATION INITIATION FACTOR 5B, EUKARYOTIC RIBOSOMAL P_E TRNA
Pairwise Interactions
Interactions annotated by FR3D:- 2,144 base-pairs
- 5,431 base-stacking
- 2,225 base-phosphate
- 330 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 4V8Y contains:- 250 internal loops from 0 motif groups
- 117 hairpin loops from 0 motif groups
- 20 three-way junctions
3D Redundancy
4V8Y has chains which belong to the following equivalence classes in the current representative set:- NR_20.0_97575.1 (1)
- NR_20.0_18586.59 (1)
- NR_20.0_90506.63 (1)
- NR_20.0_69172.1 (1) rep
- NR_20.0_03510.54 (1)
- NR_all_97575.1 (1)
- NR_all_18586.59 (1)
- NR_all_90506.63 (1)
- NR_all_69172.1 (1) rep
- NR_all_03510.54 (1)
Similar structures
4V88 5MC6 8BQD 7NRC 8C83 8BQX 4U56 6LQP 4U56 8EVR 6SV4 6KE6 6T83 6EML 5JUS 7WTR 6GQB 6Y7C 5JUU 8CMJ 5JUT 6RBE 5JUO 6T83 4U53 6RBD 4U4Y 6S47 4U3N 4U51 4U50 6T7I 8CKU 4U4N 5M1J 4U55 4U51 8C00 4U53 5JUP 4U50 6FAI 6Z6J 6Z6K 6TNU 8EVS 4U55 7ZPQ 6T7T 6XIQ 7D63 3J6Y 6LQV 6LQT 7AJT 6ZCE 6I7O 5WYK 7D5S 6I7O 5WLC 3J6X 3J77 4V6I 5WYJ 6LQR 6ZQE 5TZS 7D5T 4V8Z 6ZQF 6ZU9 3J78 7ZRS 6ZQC 7WTP 6LQU 7WTO 4U4O 7WTL 7WTN 4U4O 6ZQG 7NRD 7ZUW 7WTM 6ZQB 7SUK 6LQQ 5LL6 6LQS 7AJU 6GQ1 6ZQD 7D4I 7WTQ 6GQV 8CGN 5TGA 5DAT 5DC3 5DGF 5DGV 5DGE 5TGA 5DAT 4V7R 4V7R 5DGV 5DGE 7ZUX 8EWC 7PZY 7ZW0 8EVP 8CEH 8CDR 8CCS 5DC3 5DGF 5TGM 5TGM 5I4L 5LYB 5NDW 5MEI 5I4L 5OBM 6HHQ 7OSA 5TBW 4V88 5OBM 7OSM 5NDG 5NDG 5ON6 5NDV 5NDV 5LYB 6HHQ 5NDW 5ON6 5MEI 5TBW 8EUB 4U4Z 4U6F 4U4U 4U52 7RR5 4U3M 4U52 4U4U 4U4Q 4U3M 8C01 4U4Q 4U4N 4U3N 4U4Y 6SV4 6SV4 8CAS 7B7D 6XIR 4U4Z 4U6F 6Q8Y 7MPI 7N8B 8EWB 6WOO 7Q0P 8CG8 7Q0R 7Q0F 8EVQ 7MPJ 6T4Q 8CIV 4U4R 6TB3 4U3U 8EVT 8CAH 6ZVI 7A1G 8CDL 4U3U 4U4R 8CF5 6SNT 7Q08Structures from NR_all_03510.54