Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V9M_0011/AA/12:22No text annotation
Not in a motif group
homologous
HL_6CZR_072
HL_89881.2
HL_4V9M_0021/AA/68J:68PNo text annotation
Not in a motif group
geometric
HL_7A0S_011
HL_75407.1
HL_4V9M_0031/AA/158:163GNRA
Not in a motif group
homologous
HL_6CZR_074
HL_53845.1
HL_4V9M_0041/AA/186F:186KNo text annotation
Not in a motif group
homologous
HL_6CZR_075
HL_10278.1
HL_4V9M_0051/AA/201:216No text annotation
Not in a motif group
geometric
HL_4O26_001
HL_56691.2
HL_4V9M_0061/AA/259:267No text annotation
Not in a motif group
homologous
HL_6CZR_077
HL_69023.2
HL_4V9M_0071/AA/296:301GNRA
Not in a motif group
homologous
HL_4LFB_007
HL_42097.1
HL_4V9M_0081/AA/320:333No text annotation
Not in a motif group
homologous
HL_6CZR_079
HL_81205.2
HL_4V9M_0091/AA/342:347No text annotation
Not in a motif group
homologous
HL_6CZR_080
HL_03562.2
HL_4V9M_0101/AA/379:384GNRA
Not in a motif group
homologous
HL_4LFB_010
HL_42097.1
HL_4V9M_0111/AA/419:424UNCG
Not in a motif group
homologous
HL_4LFB_011
HL_03562.2
HL_4V9M_0121/AA/458:474No text annotation
Not in a motif group
homologous
HL_4LFB_012
HL_43656.2
HL_4V9M_0131/AA/522:527No text annotation
Not in a motif group
geometric
HL_5J7L_143
HL_75407.1
HL_4V9M_0141/AA/617:623No text annotation
Not in a motif group
homologous
HL_6CZR_085
HL_26881.1
HL_4V9M_0151/AA/689:698No text annotation
Not in a motif group
homologous
HL_5J7L_015
HL_12326.1
HL_4V9M_0161/AA/726:731Other HL
Not in a motif group
homologous
HL_6CZR_087
HL_87030.2
HL_4V9M_0171/AA/786:796No text annotation
Not in a motif group
homologous
HL_6CZR_088
HL_12326.1
HL_4V9M_0181/AA/838:848No text annotation
Not in a motif group
homologous
HL_6CZR_089
HL_53837.1
HL_4V9M_0191/AA/862:867GNRA
Not in a motif group
homologous
HL_6CZR_090
HL_87030.2
HL_4V9M_0201/AA/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_4V9M_0211/AA/963:972No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_4V9M_0221/AA/1012:1017No text annotation
Not in a motif group
HL_4V9M_0231/AA/1028B:1028GNo text annotation
Not in a motif group
geometric
HL_3OXE_002
HL_42097.1
HL_4V9M_0241/AA/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_42097.1
HL_4V9M_0251/AA/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_4V9M_0261/AA/1134:1140No text annotation
Not in a motif group
homologous
HL_6CZR_097
NA
HL_4V9M_0271/AA/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.1
HL_4V9M_0281/AA/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_42097.1
HL_4V9M_0291/AA/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_4V9M_0301/AA/1356:1366No text annotation
Not in a motif group
HL_4V9M_0311/AA/1440G:1440LUNCG
Not in a motif group
homologous
HL_5J7L_030
HL_03562.2
HL_4V9M_0321/AA/1515:1520Other HL
Not in a motif group
geometric
HL_4V88_222
HL_16173.1
HL_4V9M_0331/AW/12:23No text annotation
Not in a motif group
homologous
HL_1SER_001
NA
HL_4V9M_0341/AW/31:39tRNA anticodon loop
Not in a motif group
homologous
HL_4TUE_034
HL_53597.2
HL_4V9M_0351/AW/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5X6B_003
HL_22280.1
HL_4V9M_0361/BA/59:68No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.1
HL_4V9M_0371/BA/87:95No text annotation
Not in a motif group
homologous
HL_7RQB_002
HL_96598.1
HL_4V9M_0381/BA/123:128No text annotation
Not in a motif group
homologous
HL_7A0S_003
HL_75407.1
HL_4V9M_0391/BA/137B:141BNo text annotation
Not in a motif group
HL_4V9M_0401/BA/155:171No text annotation
Not in a motif group
HL_4V9M_0411/BA/194:201No text annotation
Not in a motif group
geometric
HL_4WF9_006
HL_06192.2
HL_4V9M_0421/BA/225:230No text annotation
Not in a motif group
homologous
HL_7A0S_007
HL_02862.2
HL_4V9M_0431/BA/246:252No text annotation
Not in a motif group
homologous
HL_7A0S_008
HL_67216.7
HL_4V9M_0441/BA/270K:270QNo text annotation
Not in a motif group
geometric
HL_5TBW_012
HL_86373.2
HL_4V9M_0451/BA/305:312No text annotation
Not in a motif group
homologous
HL_7RQB_010
HL_89380.2
HL_4V9M_0461/BA/319:323No text annotation
Not in a motif group
homologous
HL_7A0S_011
HL_75407.1
HL_4V9M_0471/BA/327:335No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.8
HL_4V9M_0481/BA/382:392No text annotation
Not in a motif group
homologous
HL_7RQB_013
HL_91503.4
HL_4V9M_0491/BA/410:417No text annotation
Not in a motif group
homologous
HL_7RQB_014
HL_96598.1
HL_4V9M_0501/BA/462:467GNRA
Not in a motif group
homologous
HL_4WF9_015
HL_42097.1
HL_4V9M_0511/BA/487:493No text annotation
Not in a motif group
homologous
HL_7A0S_016
HL_42097.1
HL_4V9M_0521/BA/544:549GNRA
Not in a motif group
geometric
HL_5J7L_007
HL_42097.1
HL_4V9M_0531/BA/566:575No text annotation
Not in a motif group
geometric
HL_7RQB_018
HL_89380.2
HL_4V9M_0541/BA/611:617No text annotation
Not in a motif group
homologous
HL_7RQB_019
HL_32369.1
HL_4V9M_0551/BA/629:634GNRA
Not in a motif group
homologous
HL_5J7L_152
HL_42097.1
HL_4V9M_0561/BA/641:647GNRA
Not in a motif group
geometric
HL_5TBW_023
HL_42097.1
HL_4V9M_0571/BA/712:719No text annotation
Not in a motif group
homologous
HL_7RQB_022
HL_84085.2
HL_4V9M_0581/BA/744:753No text annotation
Not in a motif group
homologous
HL_7RQB_023
HL_39334.6
HL_4V9M_0591/BA/779:785No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_4V9M_0601/BA/826:831No text annotation
Not in a motif group
homologous
HL_7A0S_024
HL_64365.1
HL_4V9M_0611/BA/884:892No text annotation
Not in a motif group
HL_4V9M_0621/BA/955:962GNRA
Not in a motif group
homologous
HL_4WF9_027
HL_42097.1
HL_4V9M_0631/BA/978:985No text annotation
Not in a motif group
homologous
HL_7RQB_028
HL_64430.2
HL_4V9M_0661/BA/1171:1178No text annotation
Not in a motif group
geometric
HL_361D_002
HL_90617.2
HL_4V9M_0671/BA/1222:1227No text annotation
Not in a motif group
homologous
HL_7RQB_032
HL_42097.1
HL_4V9M_0681/BA/1281:1289No text annotation
Not in a motif group
homologous
HL_7RQB_033
HL_89380.2
HL_4V9M_0691/BA/1324:1330No text annotation
Not in a motif group
homologous
HL_7RQB_034
HL_46680.1
HL_4V9M_0701/BA/1363:1368No text annotation
Not in a motif group
homologous
HL_7RQB_035
HL_87030.2
HL_4V9M_0711/BA/1389:1398No text annotation
Not in a motif group
homologous
HL_7RQB_036
HL_69023.2
HL_4V9M_0721/BA/1450:1461No text annotation
Not in a motif group
HL_4V9M_0731/BA/1492:1498No text annotation
Not in a motif group
HL_4V9M_0741/BA/1533:1538No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_75407.1
HL_4V9M_0751/BA/1565:1568No text annotation
Not in a motif group
homologous
HL_7A0S_039
HL_38927.2
HL_4V9M_0761/BA/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_4V9M_0771/BA/1630:1636No text annotation
Not in a motif group
HL_4V9M_0781/BA/1691:1696No text annotation
Not in a motif group
geometric
HL_6CZR_080
HL_03562.2
HL_4V9M_0791/BA/1727:1733No text annotation
Not in a motif group
homologous
HL_7RQB_043
HL_43656.2
HL_4V9M_0801/BA/1752:1756No text annotation
Not in a motif group
homologous
HL_4WF9_042
HL_76539.2
HL_4V9M_0811/BA/1777:1787No text annotation
Not in a motif group
homologous
HL_4WF9_043
HL_43613.5
HL_4V9M_0821/BA/1806:1811No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_42097.1
HL_4V9M_0831/BA/1864:1878No text annotation
Not in a motif group
homologous
HL_7RQB_047
HL_42097.1
HL_4V9M_0841/BA/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_4V9M_0851/BA/1949:1957No text annotation
Not in a motif group
homologous
HL_4WF9_046
HL_51824.1
HL_4V9M_0861/BA/2027:2036No text annotation
Not in a motif group
homologous
HL_7RQB_050
HL_90642.6
HL_4V9M_0881/BA/2209:2215No text annotation
Not in a motif group
geometric
HL_6U8D_003
HL_89098.1
HL_4V9M_0891/BA/2248:2256No text annotation
Not in a motif group
homologous
HL_7A0S_052
HL_53171.2
HL_4V9M_0901/BA/2264:2276No text annotation
Not in a motif group
homologous
HL_7RQB_054
HL_19870.6
HL_4V9M_0911/BA/2304:2312No text annotation
Not in a motif group
HL_4V9M_0921/BA/2324:2331No text annotation
Not in a motif group
homologous
HL_7RQB_056
HL_12078.2
HL_4V9M_0931/BA/2355:2362No text annotation
Not in a motif group
homologous
HL_7RQB_057
HL_09136.1
HL_4V9M_0941/BA/2374:2379No text annotation
Not in a motif group
homologous
HL_7RQB_058
HL_42097.1
HL_4V9M_0951/BA/2404:2413No text annotation
Not in a motif group
homologous
HL_7A0S_058
HL_30784.2
HL_4V9M_0961/BA/2471:2479No text annotation
Not in a motif group
homologous
HL_5J7L_193
HL_06192.2
HL_4V9M_0971/BA/2528:2535No text annotation
Not in a motif group
homologous
HL_5J7L_194
HL_88526.2
HL_4V9M_0981/BA/2551:2557No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_4V9M_0991/BA/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_42097.1
HL_4V9M_1001/BA/2658:2663No text annotation
Not in a motif group
homologous
HL_7A0S_063
HL_42097.1
HL_4V9M_1011/BA/2701:2706No text annotation
Not in a motif group
homologous
HL_7RQB_065
HL_53171.2
HL_4V9M_1021/BA/2745:2759No text annotation
Not in a motif group
homologous
HL_4WF9_062
HL_56677.7
HL_4V9M_1031/BA/2794:2802Other HL
Not in a motif group
geometric
HL_1P6V_001
HL_03562.2
HL_4V9M_1041/BA/2819:2827No text annotation
Not in a motif group
homologous
HL_7RQB_068
HL_27930.1
HL_4V9M_1051/BA/2856:2861No text annotation
Not in a motif group
homologous
HL_7A0S_068
HL_42097.1
HL_4V9M_1061/BB/38:44No text annotation
Not in a motif group
geometric
HL_7RQB_070
HL_87939.1
HL_4V9M_1071/BB/86:90GNRA
Not in a motif group
homologous
HL_5TBW_186
HL_42097.1
HL_4V9M_1081/CA/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_4V9M_1091/CA/68J:68PNo text annotation
Not in a motif group
homologous
HL_4LFB_002
HL_30784.2
HL_4V9M_1101/CA/158:163GNRA
Not in a motif group
homologous
HL_6CZR_074
HL_53845.1
HL_4V9M_1111/CA/186F:186KNo text annotation
Not in a motif group
homologous
HL_6CZR_075
HL_10278.1
HL_4V9M_1121/CA/201:216No text annotation
Not in a motif group
HL_4V9M_1131/CA/259:267No text annotation
Not in a motif group
homologous
HL_6CZR_077
HL_69023.2
HL_4V9M_1141/CA/296:301GNRA
Not in a motif group
homologous
HL_4LFB_007
HL_42097.1
HL_4V9M_1151/CA/320:333No text annotation
Not in a motif group
homologous
HL_6CZR_079
HL_81205.2
HL_4V9M_1161/CA/342:347No text annotation
Not in a motif group
homologous
HL_6CZR_080
HL_03562.2
HL_4V9M_1171/CA/379:384GNRA
Not in a motif group
homologous
HL_4LFB_010
HL_42097.1
HL_4V9M_1181/CA/419:424UNCG
Not in a motif group
homologous
HL_4LFB_011
HL_03562.2
HL_4V9M_1191/CA/458:474No text annotation
Not in a motif group
homologous
HL_4LFB_012
HL_43656.2
HL_4V9M_1201/CA/522:527No text annotation
Not in a motif group
geometric
HL_5J7L_143
HL_75407.1
HL_4V9M_1211/CA/617:623No text annotation
Not in a motif group
homologous
HL_5J7L_014
HL_26881.1
HL_4V9M_1221/CA/689:698No text annotation
Not in a motif group
homologous
HL_5J7L_015
HL_12326.1
HL_4V9M_1231/CA/726:731Other HL
Not in a motif group
homologous
HL_4LFB_016
HL_87030.2
HL_4V9M_1241/CA/786:796No text annotation
Not in a motif group
homologous
HL_6CZR_088
HL_12326.1
HL_4V9M_1251/CA/838:848No text annotation
Not in a motif group
homologous
HL_6CZR_089
HL_53837.1
HL_4V9M_1261/CA/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.1
HL_4V9M_1271/CA/897:902GNRA
Not in a motif group
homologous
HL_6CZR_091
HL_42097.1
HL_4V9M_1281/CA/963:972No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_4V9M_1291/CA/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_4V9M_1301/CA/1028B:1028GNo text annotation
Not in a motif group
geometric
HL_5J7L_179
HL_42097.1
HL_4V9M_1311/CA/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_42097.1
HL_4V9M_1321/CA/1089:1096No text annotation
Not in a motif group
homologous
HL_5J7L_024
HL_71554.2
HL_4V9M_1331/CA/1134:1140No text annotation
Not in a motif group
homologous
HL_6CZR_097
NA
HL_4V9M_1341/CA/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.1
HL_4V9M_1351/CA/1265:1270No text annotation
Not in a motif group
homologous
HL_6CZR_099
NA
HL_4V9M_1361/CA/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_4V9M_1371/CA/1356:1366No text annotation
Not in a motif group
HL_4V9M_1381/CA/1440G:1440LUNCG
Not in a motif group
homologous
HL_5J7L_030
HL_03562.2
HL_4V9M_1391/CA/1515:1520No text annotation
Not in a motif group
homologous
HL_6CZR_103
NA
HL_4V9M_1401/CW/12:23No text annotation
Not in a motif group
homologous
HL_1SER_001
NA
HL_4V9M_1411/CW/31:39tRNA anticodon loop
Not in a motif group
homologous
HL_4TUE_034
HL_53597.2
HL_4V9M_1421/CW/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_6PMO_005
HL_22280.1
HL_4V9M_1431/DA/59:68No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.1
HL_4V9M_1441/DA/87:95No text annotation
Not in a motif group
homologous
HL_7RQB_002
HL_96598.1
HL_4V9M_1451/DA/123:128No text annotation
Not in a motif group
homologous
HL_7A0S_003
HL_75407.1
HL_4V9M_1461/DA/137B:141BNo text annotation
Not in a motif group
homologous
HL_7RQB_004
HL_79921.2
HL_4V9M_1471/DA/155:171Other HL
Not in a motif group
geometric
HL_1P6V_001
HL_03562.2
HL_4V9M_1481/DA/194:201No text annotation
Not in a motif group
homologous
HL_4WF9_006
HL_06192.2
HL_4V9M_1491/DA/225:230No text annotation
Not in a motif group
homologous
HL_7A0S_007
HL_02862.2
HL_4V9M_1501/DA/246:252No text annotation
Not in a motif group
homologous
HL_7A0S_008
HL_67216.7
HL_4V9M_1511/DA/270K:270QNo text annotation
Not in a motif group
geometric
HL_5WTI_001
HL_91058.1
HL_4V9M_1521/DA/305:312No text annotation
Not in a motif group
homologous
HL_7RQB_010
HL_89380.2
HL_4V9M_1531/DA/319:323No text annotation
Not in a motif group
homologous
HL_7A0S_011
HL_75407.1
HL_4V9M_1541/DA/327:335No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.8
HL_4V9M_1551/DA/383:391No text annotation
Not in a motif group
HL_4V9M_1561/DA/410:417No text annotation
Not in a motif group
homologous
HL_7RQB_014
HL_96598.1
HL_4V9M_1571/DA/462:467GNRA
Not in a motif group
homologous
HL_4WF9_015
HL_42097.1
HL_4V9M_1581/DA/487:493No text annotation
Not in a motif group
homologous
HL_7RQB_016
HL_42097.1
HL_4V9M_1591/DA/544:549GNRA
Not in a motif group
geometric
HL_6JDV_001
HL_42097.1
HL_4V9M_1601/DA/566:575T-loop with 2 stacked bulged bases
Not in a motif group
geometric
HL_4WF9_018
HL_89380.2
HL_4V9M_1611/DA/611:617No text annotation
Not in a motif group
homologous
HL_7RQB_019
HL_32369.1
HL_4V9M_1621/DA/629:634GNRA
Not in a motif group
homologous
HL_4WF9_020
HL_42097.1
HL_4V9M_1631/DA/641:647No text annotation
Not in a motif group
HL_4V9M_1641/DA/712:719No text annotation
Not in a motif group
homologous
HL_7RQB_022
HL_84085.2
HL_4V9M_1651/DA/744:753No text annotation
Not in a motif group
HL_4V9M_1661/DA/779:785No text annotation
Not in a motif group
geometric
HL_361D_002
HL_90617.2
HL_4V9M_1671/DA/826:831No text annotation
Not in a motif group
homologous
HL_7A0S_024
HL_64365.1
HL_4V9M_1681/DA/884:892No text annotation
Not in a motif group
geometric
HL_361D_002
HL_90617.2
HL_4V9M_1691/DA/955:962No text annotation
Not in a motif group
homologous
HL_7RQB_027
HL_42097.1
HL_4V9M_1701/DA/978:985No text annotation
Not in a motif group
homologous
HL_7RQB_028
HL_64430.2
HL_4V9M_1731/DA/1171:1178No text annotation
Not in a motif group
geometric
HL_361D_002
HL_90617.2
HL_4V9M_1741/DA/1222:1227GNRA
Not in a motif group
geometric
HL_2Z75_004
HL_42097.1
HL_4V9M_1751/DA/1281:1289No text annotation
Not in a motif group
homologous
HL_7RQB_033
HL_89380.2
HL_4V9M_1761/DA/1324:1330No text annotation
Not in a motif group
homologous
HL_7RQB_034
HL_46680.1
HL_4V9M_1771/DA/1363:1368No text annotation
Not in a motif group
homologous
HL_7RQB_035
HL_87030.2
HL_4V9M_1781/DA/1389:1398No text annotation
Not in a motif group
homologous
HL_5J7L_168
HL_69023.2
HL_4V9M_1791/DA/1450:1461No text annotation
Not in a motif group
HL_4V9M_1801/DA/1492:1498No text annotation
Not in a motif group
HL_4V9M_1811/DA/1533:1538Other HL
Not in a motif group
geometric
HL_2CZJ_007
HL_53845.1
HL_4V9M_1821/DA/1565:1568No text annotation
Not in a motif group
homologous
HL_7A0S_039
HL_38927.2
HL_4V9M_1831/DA/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_4V9M_1841/DA/1630:1636No text annotation
Not in a motif group
HL_4V9M_1851/DA/1691:1696No text annotation
Not in a motif group
geometric
HL_7RQB_042
HL_03562.2
HL_4V9M_1861/DA/1727:1733No text annotation
Not in a motif group
homologous
HL_7RQB_043
HL_43656.2
HL_4V9M_1871/DA/1752:1756No text annotation
Not in a motif group
homologous
HL_4WF9_042
HL_76539.2
HL_4V9M_1881/DA/1777:1787No text annotation
Not in a motif group
homologous
HL_4WF9_043
HL_43613.5
HL_4V9M_1891/DA/1806:1811No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_42097.1
HL_4V9M_1901/DA/1864:1878No text annotation
Not in a motif group
homologous
HL_7RQB_047
HL_42097.1
HL_4V9M_1911/DA/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_4V9M_1921/DA/1949:1957No text annotation
Not in a motif group
homologous
HL_4WF9_046
HL_51824.1
HL_4V9M_1931/DA/2027:2036No text annotation
Not in a motif group
homologous
HL_7RQB_050
HL_90642.6
HL_4V9M_1951/DA/2209:2215No text annotation
Not in a motif group
geometric
HL_6U8D_003
HL_89098.1
HL_4V9M_1961/DA/2248:2256No text annotation
Not in a motif group
homologous
HL_7RQB_053
NA
HL_4V9M_1971/DA/2264:2276No text annotation
Not in a motif group
homologous
HL_7A0S_053
HL_19870.6
HL_4V9M_1981/DA/2303:2313No text annotation
Not in a motif group
homologous
HL_4WF9_051
NA
HL_4V9M_1991/DA/2324:2331No text annotation
Not in a motif group
homologous
HL_7RQB_056
HL_12078.2
HL_4V9M_2001/DA/2355:2362No text annotation
Not in a motif group
homologous
HL_7RQB_057
HL_09136.1
HL_4V9M_2011/DA/2374:2379No text annotation
Not in a motif group
homologous
HL_7RQB_058
HL_42097.1
HL_4V9M_2021/DA/2404:2413No text annotation
Not in a motif group
homologous
HL_7A0S_058
HL_30784.2
HL_4V9M_2031/DA/2471:2479No text annotation
Not in a motif group
homologous
HL_5J7L_193
HL_06192.2
HL_4V9M_2041/DA/2528:2535No text annotation
Not in a motif group
homologous
HL_7RQB_061
HL_88526.2
HL_4V9M_2051/DA/2551:2557No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_4V9M_2061/DA/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_42097.1
HL_4V9M_2071/DA/2658:2663GNRA
Not in a motif group
homologous
HL_5J7L_197
HL_42097.1
HL_4V9M_2081/DA/2701:2706No text annotation
Not in a motif group
homologous
HL_7RQB_065
HL_53171.2
HL_4V9M_2091/DA/2745:2759No text annotation
Not in a motif group
homologous
HL_7RQB_066
HL_56677.7
HL_4V9M_2101/DA/2794:2802Other HL
Not in a motif group
geometric
HL_1P6V_001
HL_03562.2
HL_4V9M_2111/DA/2819:2827No text annotation
Not in a motif group
homologous
HL_7RQB_068
HL_27930.1
HL_4V9M_2121/DA/2856:2861No text annotation
Not in a motif group
homologous
HL_7RQB_069
HL_42097.1
HL_4V9M_2131/DB/38:44No text annotation
Not in a motif group
geometric
HL_5J7L_203
HL_87939.1
HL_4V9M_2141/DB/86:90GNRA
Not in a motif group
homologous
HL_5TBW_186
HL_42097.1

Problematic loops

#loop idProblemSequence
HL_4V9M_064No text annotation
HL_4V9M_065No text annotation
HL_4V9M_087No text annotation
HL_4V9M_171No text annotation
HL_4V9M_172No text annotation
HL_4V9M_194No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V9M_0011/AA/30:32,
1/AA/552:553
Single bulged G
Not in a motif group
geometric
IL_6CZR_113
IL_00225.2
IL_4V9M_0031/AA/44:45,
1/AA/396:398
Single bulged A
Not in a motif group
homologous
IL_4LFB_002
IL_37497.2
IL_4V9M_0041/AA/47:52,
1/AA/359:361
No text annotation
Not in a motif group
homologous
IL_4LFB_003
IL_11178.1
IL_4V9M_0051/AA/54:56,
1/AA/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_93353.1
IL_4V9M_0061/AA/63:66,
1/AA/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_005
IL_76389.1
IL_4V9M_0071/AA/67:68A,
1/AA/68Y:102
No text annotation
Not in a motif group
homologous
IL_4LFB_006
IL_95997.1
IL_4V9M_0081/AA/68D:68F,
1/AA/68T:68V
No text annotation
Not in a motif group
geometric
IL_1NBS_006
IL_95997.1
IL_4V9M_0091/AA/129:131,
1/AA/231:232
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_007
IL_16396.2
IL_4V9M_0101/AA/132:136,
1/AA/227:230
No text annotation
Not in a motif group
homologous
IL_4LFB_008
IL_58764.3
IL_4V9M_0111/AA/148:153,
1/AA/168:174
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_4LFB_009
IL_39753.1
IL_4V9M_0121/AA/186:186B,
1/AA/186O:191
No text annotation
Not in a motif group
homologous
IL_4LFB_010
IL_95997.1
IL_4V9M_0131/AA/242:247,
1/AA/277:284
No text annotation
Not in a motif group
IL_4V9M_0141/AA/249:252,
1/AA/274:275
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_48100.2
IL_4V9M_0161/AA/367:369,
1/AA/392:393
Single bulged U
Not in a motif group
homologous
IL_5J7L_017
IL_83039.13
IL_4V9M_0171/AA/371:375,
1/AA/389:390
C-loop
Not in a motif group
homologous
IL_5J7L_018
IL_75255.1
IL_4V9M_0181/AA/375:376,
1/AA/387:389
Single bulged G
Not in a motif group
geometric
IL_5J7L_019
IL_00225.2
IL_4V9M_0201/AA/409:416,
1/AA/427:433
No text annotation
Not in a motif group
geometric
IL_4LFB_017
IL_28026.1
IL_4V9M_0211/AA/446:450,
1/AA/483:488
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_4LFB_018
IL_88269.3
IL_4V9M_0221/AA/450:455,
1/AA/477:483
No text annotation
Not in a motif group
geometric
IL_4LFB_019
IL_11882.1
IL_4V9M_0231/AA/504:511,
1/AA/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4LFB_020
IL_15861.7
IL_4V9M_0241/AA/515:521,
1/AA/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_4V9M_0251/AA/569:575,
1/AA/880:881
No text annotation
Not in a motif group
homologous
IL_6CZR_134
IL_69996.1
IL_4V9M_0261/AA/580:584,
1/AA/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_023
IL_17136.1
IL_4V9M_0271/AA/594:596,
1/AA/644:645
Major groove platform
Not in a motif group
homologous
IL_4LFB_024
IL_27635.1
IL_4V9M_0281/AA/597:598,
1/AA/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.6
IL_4V9M_0291/AA/605:612,
1/AA/628:633
No text annotation
Not in a motif group
homologous
IL_4LFB_026
IL_78349.1
IL_4V9M_0301/AA/654:655,
1/AA/751:754
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_5J7L_031
IL_50694.2
IL_4V9M_0311/AA/657:658,
1/AA/747:749
Major groove platform
Not in a motif group
homologous
IL_4LFB_028
IL_27635.1
IL_4V9M_0321/AA/662:666,
1/AA/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_6CZR_141
IL_71110.1
IL_4V9M_0331/AA/673:678,
1/AA/712:717
No text annotation
Not in a motif group
homologous
IL_4LFB_030
IL_04668.1
IL_4V9M_0341/AA/683:688,
1/AA/699:707
No text annotation
Not in a motif group
homologous
IL_6CZR_143
IL_37722.1
IL_4V9M_0351/AA/774:778,
1/AA/804:805
Left turn
Not in a motif group
homologous
IL_5J7L_036
IL_29346.1
IL_4V9M_0361/AA/779:783,
1/AA/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_037
IL_17136.1
IL_4V9M_0371/AA/887:894,
1/AA/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4LFB_034
IL_24606.2
IL_4V9M_0381/AA/922:923,
1/AA/1393:1395
Single bulged A
Not in a motif group
homologous
IL_6CZR_147
IL_37497.2
IL_4V9M_0391/AA/925:927,
1/AA/1390:1391
Single bulged G
Not in a motif group
homologous
IL_5J7L_040
IL_00225.2
IL_4V9M_0401/AA/933:935,
1/AA/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_5J7L_041
IL_47078.1
IL_4V9M_0411/AA/953:954,
1/AA/1226:1228
Minor groove platform
Not in a motif group
homologous
IL_4LFB_038
IL_42622.2
IL_4V9M_0421/AA/993:997,
1/AA/1044:1045
Minor groove platform
Not in a motif group
geometric
IL_5J7L_043
IL_47078.1
IL_4V9M_0431/AA/1048:1050,
1/AA/1208:1209
Single bulged U
Not in a motif group
homologous
IL_5J7L_046
IL_83039.13
IL_4V9M_0441/AA/1052:1056,
1/AA/1204:1206
Isolated cWS basepair
Not in a motif group
homologous
IL_4LFB_044
IL_76319.2
IL_4V9M_0451/AA/1057:1058,
1/AA/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_93353.1
IL_4V9M_0461/AA/1060:1061,
1/AA/1195:1197
Single bulged U
Not in a motif group
geometric
IL_2PN3_003
IL_83039.13
IL_4V9M_0471/AA/1061:1063,
1/AA/1193:1195
No text annotation
Not in a motif group
geometric
IL_5J7L_050
IL_95997.1
IL_4V9M_0481/AA/1124:1127,
1/AA/1145:1149
No text annotation
Not in a motif group
IL_4V9M_0491/AA/1127:1128,
1/AA/1143:1145
Single stack bend
Not in a motif group
geometric
IL_5J7L_269
IL_76488.2
IL_4V9M_0501/AA/1128:1132,
1/AA/1142:1143
Minor groove platform
Not in a motif group
geometric
IL_4LFB_049
IL_15052.1
IL_4V9M_0511/AA/1158:1161,
1/AA/1175:1181
No text annotation
Not in a motif group
geometric
IL_5J7L_053
IL_42032.1
IL_4V9M_0521/AA/1246:1253,
1/AA/1284:1291
No text annotation
Not in a motif group
IL_4V9M_0531/AA/1255:1258,
1/AA/1277:1282
No text annotation
Not in a motif group
homologous
IL_4LFB_052
IL_84205.1
IL_4V9M_0541/AA/1259:1260,
1/AA/1274:1276
Not an internal loop
Not in a motif group
homologous
IL_4LFB_053
IL_93353.1
IL_4V9M_0551/AA/1260:1262,
1/AA/1273:1274
Minor groove platform
Not in a motif group
geometric
IL_5TBW_039
IL_42622.2
IL_4V9M_0561/AA/1303:1308,
1/AA/1329:1334
No text annotation
Not in a motif group
geometric
IL_4LFB_055
IL_19954.2
IL_4V9M_0571/AA/1399:1401,
1/AA/1501:1504
No text annotation
Not in a motif group
geometric
IL_4V88_463
IL_36143.3
IL_4V9M_0581/AA/1401:1404,
1/AA/1497:1501
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_4V9M_0591/AA/1405:1407,
1/AA/1494:1496
No text annotation
Not in a motif group
geometric
IL_4LFB_010
IL_95997.1
IL_4V9M_0601/AA/1407:1410,
1/AA/1490:1494
No text annotation
Not in a motif group
IL_4V9M_0611/AA/1412:1414,
1/AA/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_4V9M_0621/AA/1416:1419,
1/AA/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.9
IL_4V9M_0631/AA/1431:1435,
1/AA/1466:1469
UAA/GAN variation
Not in a motif group
geometric
IL_4LFB_062
IL_07235.1
IL_4V9M_0641/AA/1435:1437,
1/AA/1464:1466
No text annotation
Not in a motif group
homologous
IL_4LFB_063
IL_95997.1
IL_4V9M_0651/AA/1440:1440E,
1/AA/1440N:1461
Isolated basepair with bulged bases
Not in a motif group
homologous
IL_6CZR_172
IL_92788.2
IL_4V9M_0661/AW/50:52,
1/AW/62:64
No text annotation
Not in a motif group
homologous
IL_4V9K_064
IL_95997.1
IL_4V9M_0671/BA/24:30,
1/BA/510:516
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_7RQB_001
IL_66414.6
IL_4V9M_0681/BA/36:37,
1/BA/442:444
Single bulged A
Not in a motif group
homologous
IL_7A0S_002
IL_37497.2
IL_4V9M_0691/BA/43:44,
1/BA/434:436
Minor groove platform
Not in a motif group
homologous
IL_5J7L_247
IL_42622.2
IL_4V9M_0701/BA/55:56,
1/BA/114:115
No text annotation
Not in a motif group
IL_4V9M_0711/BA/81:85,
1/BA/97:105
Kink-turn
Not in a motif group
homologous
IL_7RQB_004
IL_45067.2
IL_4V9M_0721/BA/122:123,
1/BA/128:129
No text annotation
Not in a motif group
IL_4V9M_0731/BA/134:135,
1/BA/144:145
No text annotation
Not in a motif group
IL_4V9M_0741/BA/154:155,
1/BA/171:172
No text annotation
Not in a motif group
IL_4V9M_0751/BA/183:184,
1/BA/212:214
Single stack bend
Not in a motif group
homologous
IL_4WF9_007
IL_76488.2
IL_4V9M_0761/BA/188:194,
1/BA/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_006
IL_04346.7
IL_4V9M_0771/BA/239:245,
1/BA/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_007
IL_76042.2
IL_4V9M_0791/BA/273A:273B,
1/BA/363F:364
Major groove platform
Not in a motif group
homologous
IL_7RQB_009
IL_27635.1
IL_4V9M_0801/BA/273G:278,
1/BA/362:363A
No text annotation
Not in a motif group
IL_4V9M_0811/BA/280:284,
1/BA/357:360
tSH-tHW
Not in a motif group
homologous
IL_7RQB_011
IL_04059.1
IL_4V9M_0821/BA/288:290,
1/BA/350:353
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_012
IL_38958.7
IL_4V9M_0831/BA/293:295,
1/BA/343:347
No text annotation
Not in a motif group
homologous
IL_7RQB_013
IL_69440.1
IL_4V9M_0841/BA/481:484,
1/BA/496:509
No text annotation
Not in a motif group
homologous
IL_7RQB_014
IL_60992.6
IL_4V9M_0851/BA/564:566,
1/BA/575:577
No text annotation
Not in a motif group
homologous
IL_4WF9_017
IL_95997.1
IL_4V9M_0861/BA/606:609B,
1/BA/618B:622
AAA cross-strand stack
Not in a motif group
homologous
IL_7RQB_016
IL_17136.1
IL_4V9M_0871/BA/672:674,
1/BA/806:808
No text annotation
Not in a motif group
homologous
IL_5J7L_259
IL_95997.1
IL_4V9M_0881/BA/674:678,
1/BA/799:806
tHW-tHW cross-strand stack
Not in a motif group
geometric
IL_4WF9_021
IL_17470.6
IL_4V9M_0891/BA/697:698,
1/BA/763:765
Single bulged A
Not in a motif group
homologous
IL_7A0S_016
IL_37497.2
IL_4V9M_0901/BA/702:703,
1/BA/728:730
Single bulged G
Not in a motif group
homologous
IL_7RQB_020
IL_00225.2
IL_4V9M_0911/BA/703:707,
1/BA/724:728
Triple sheared
Not in a motif group
geometric
IL_7RQB_021
IL_56467.8
IL_4V9M_0921/BA/738:741,
1/BA/756:758
Major groove platform with extra cWW
Not in a motif group
homologous
IL_7RQB_022
IL_05564.2
IL_4V9M_0931/BA/775:777,
1/BA/787:791
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_023
IL_90991.6
IL_4V9M_0941/BA/837:838,
1/BA/940:942
Single stack bend
Not in a motif group
homologous
IL_7A0S_022
IL_92001.1
IL_4V9M_0951/BA/844:846,
1/BA/931:934
Intercalated cWW
Not in a motif group
homologous
IL_7RQB_025
IL_52767.2
IL_4V9M_0961/BA/846:850,
1/BA/928:931
No text annotation
Not in a motif group
geometric
IL_7RQB_026
IL_94165.1
IL_4V9M_0971/BA/858:862,
1/BA/915:919
5x5 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_7RQB_027
IL_38862.1
IL_4V9M_0981/BA/862:863,
1/BA/913:915
Minor groove platform
Not in a motif group
homologous
IL_7A0S_028
IL_42622.2
IL_4V9M_0991/BA/864:868,
1/BA/909:912
C-loop
Not in a motif group
homologous
IL_7RQB_029
IL_02509.1
IL_4V9M_1001/BA/875:877,
1/BA/899:902
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_7RQB_031
IL_46796.1
IL_4V9M_1011/BA/877:879,
1/BA/898:899
Single stack bend
Not in a motif group
geometric
IL_7RQB_058
IL_76488.2
IL_4V9M_1021/BA/880:881,
1/BA/895:897
Single bulged A
Not in a motif group
homologous
IL_7RQB_033
IL_37497.2
IL_4V9M_1031/BA/952:954,
1/BA/963:965
No text annotation
Not in a motif group
homologous
IL_7A0S_031
IL_95997.1
IL_4V9M_1041/BA/994:996,
1/BA/1159:1160
Single bulged C
Not in a motif group
homologous
IL_5J7L_276
IL_61258.12
IL_4V9M_1051/BA/998:1002,
1/BA/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_4WF9_036
IL_89002.2
IL_4V9M_1061/BA/1004:1011,
1/BA/1150:1151
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_7RQB_037
IL_15861.7
IL_4V9M_1071/BA/1011:1013,
1/BA/1149:1150
Single bulged U
Not in a motif group
geometric
IL_5TBW_050
IL_83039.13
IL_4V9M_1081/BA/1018:1024,
1/BA/1140:1144
No text annotation
Not in a motif group
IL_4V9M_1091/BA/1024:1030,
1/BA/1124:1140
No text annotation
Not in a motif group
geometric
IL_7RQB_040
IL_50715.1
IL_4V9M_1101/BA/1031:1034,
1/BA/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_4WF9_041
IL_82068.2
IL_4V9M_1111/BA/1043:1051,
1/BA/1108:1112
Kink-turn
Not in a motif group
homologous
IL_5J7L_284
IL_90538.4
IL_4V9M_1141/BA/1196:1198,
1/BA/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_7RQB_045
IL_52767.2
IL_4V9M_1151/BA/1202:1206,
1/BA/1240:1243
No text annotation
Not in a motif group
homologous
IL_7RQB_046
IL_68574.2
IL_4V9M_1161/BA/1208:1215,
1/BA/1234:1238
Kink-turn
Not in a motif group
homologous
IL_7RQB_047
IL_70923.2
IL_4V9M_1171/BA/1219:1221,
1/BA/1229:1230
Single bulged A
Not in a motif group
homologous
IL_7RQB_048
IL_37497.2
IL_4V9M_1181/BA/1221:1222,
1/BA/1227:1229
Not an internal loop
Not in a motif group
geometric
IL_5VCI_005
IL_82842.2
IL_4V9M_1191/BA/1262:1269,
1/BA/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_049
IL_04346.7
IL_4V9M_1201/BA/1310:1313,
1/BA/1603:1604
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_050
IL_50694.2
IL_4V9M_1211/BA/1319:1323,
1/BA/1331:1333
C-loop
Not in a motif group
homologous
IL_7RQB_051
IL_63596.6
IL_4V9M_1221/BA/1351:1355,
1/BA/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_7RQB_052
IL_89002.2
IL_4V9M_1231/BA/1357:1361,
1/BA/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_7RQB_053
IL_17136.1
IL_4V9M_1241/BA/1415:1416,
1/BA/1582:1587
No text annotation
Not in a motif group
homologous
IL_7RQB_054
IL_67474.4
IL_4V9M_1251/BA/1417:1421,
1/BA/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_5J7L_295
IL_89002.2
IL_4V9M_1261/BA/1433:1435,
1/BA/1557:1560
No text annotation
Not in a motif group
homologous
IL_7A0S_052
IL_55351.2
IL_4V9M_1271/BA/1437:1440,
1/BA/1551:1555
tSH-tHW
Not in a motif group
homologous
IL_7RQB_057
IL_04059.1
IL_4V9M_1281/BA/1469:1473,
1/BA/1520:1523
UAA/GAN
Not in a motif group
homologous
IL_7RQB_060
IL_07235.1
IL_4V9M_1291/BA/1481:1483,
1/BA/1506:1512
No text annotation
Not in a motif group
homologous
IL_7RQB_061
IL_52493.1
IL_4V9M_1301/BA/1489:1491,
1/BA/1499:1500
Single bulged A
Not in a motif group
homologous
IL_7RQB_062
IL_37497.2
IL_4V9M_1311/BA/1651:1656,
1/BA/2004:2006
No text annotation
Not in a motif group
homologous
IL_5J7L_304
IL_12566.2
IL_4V9M_1321/BA/1663:1665,
1/BA/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_5J7L_305
IL_54997.7
IL_4V9M_1331/BA/1666:1669,
1/BA/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_7RQB_066
IL_50694.2
IL_4V9M_1341/BA/1669:1674,
1/BA/1990:1993
Intercalated tWH
Not in a motif group
homologous
IL_7RQB_067
IL_82842.2
IL_4V9M_1351/BA/1686:1691,
1/BA/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
homologous
IL_5J7L_308
IL_65969.2
IL_4V9M_1361/BA/1770:1771,
1/BA/1980:1982
Single bulged A
Not in a motif group
homologous
IL_7RQB_069
IL_37497.2
IL_4V9M_1371/BA/1798:1804,
1/BA/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_7RQB_070
IL_17069.3
IL_4V9M_1381/BA/1837:1840,
1/BA/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_7RQB_071
IL_88739.1
IL_4V9M_1391/BA/1841:1843,
1/BA/1897:1901
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_4V9F_097
IL_82068.2
IL_4V9M_1401/BA/1846:1849,
1/BA/1893:1894
Minor groove platform
Not in a motif group
homologous
IL_7RQB_073
IL_88739.1
IL_4V9M_1411/BA/1851:1855,
1/BA/1887:1891
UAA/GAN with extra pair
Not in a motif group
homologous
IL_7A0S_069
IL_90318.1
IL_4V9M_1421/BA/1856:1860,
1/BA/1882:1886
Triple sheared
Not in a motif group
homologous
IL_7RQB_075
IL_56467.8
IL_4V9M_1431/BA/1933:1934,
1/BA/1964:1967
Multiple bulged bases
Not in a motif group
geometric
IL_7A0S_071
IL_59677.2
IL_4V9M_1441/BA/1934:1945,
1/BA/1961:1964
No text annotation
Not in a motif group
homologous
IL_4WF9_077
IL_81589.2
IL_4V9M_1451/BA/2050:2052,
1/BA/2617:2618
Major groove platform
Not in a motif group
homologous
IL_5J7L_320
IL_27635.1
IL_4V9M_1461/BA/2054:2057,
1/BA/2611:2615
No text annotation
Not in a motif group
homologous
IL_7RQB_079
IL_01206.1
IL_4V9M_1471/BA/2067:2069,
1/BA/2442:2443
Single bulged U
Not in a motif group
homologous
IL_7A0S_075
IL_83039.13
IL_4V9M_1481/BA/2070:2071,
1/BA/2438:2441
Minor groove platform
Not in a motif group
homologous
IL_7RQB_081
IL_42622.2
IL_4V9M_1491/BA/2081:2083,
1/BA/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_082
IL_38958.7
IL_4V9M_1501/BA/2085:2087,
1/BA/2232:2234
No text annotation
Not in a motif group
homologous
IL_7RQB_083
IL_95997.1
IL_4V9M_1551/BA/2297:2299,
1/BA/2317:2321
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_088
IL_38958.7
IL_4V9M_1571/BA/2350:2353,
1/BA/2364:2367
Double sheared
Not in a motif group
homologous
IL_7RQB_089
IL_09705.9
IL_4V9M_1581/BA/2401:2403,
1/BA/2414:2415
Single bulged U
Not in a motif group
homologous
IL_5J7L_334
IL_83039.13
IL_4V9M_1591/BA/2453:2454,
1/BA/2498:2500
Single stack bend
Not in a motif group
homologous
IL_7RQB_091
IL_76488.2
IL_4V9M_1601/BA/2454:2455,
1/BA/2496:2498
Major groove platform
Not in a motif group
geometric
IL_1S03_004
IL_27635.1
IL_4V9M_1611/BA/2457:2461,
1/BA/2489:2494
No text annotation
Not in a motif group
IL_4V9M_1621/BA/2466:2470,
1/BA/2480:2484
Triple sheared
Not in a motif group
homologous
IL_5J7L_338
IL_56467.8
IL_4V9M_1631/BA/2507:2508,
1/BA/2580:2582
Major groove platform
Not in a motif group
homologous
IL_4WF9_094
IL_76223.2
IL_4V9M_1641/BA/2510:2512,
1/BA/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_7RQB_097
IL_90933.2
IL_4V9M_1651/BA/2512:2513,
1/BA/2571:2574
No text annotation
Not in a motif group
homologous
IL_4WF9_096
IL_71530.2
IL_4V9M_1661/BA/2522:2523,
1/BA/2540:2543
Minor groove platform with intercalation
Not in a motif group
homologous
IL_4WF9_097
IL_95601.3
IL_4V9M_1671/BA/2591:2592,
1/BA/2601:2603
Single bulged A
Not in a motif group
homologous
IL_7RQB_101
IL_37497.2
IL_4V9M_1681/BA/2636:2640,
1/BA/2774:2782
tSH-tHS-tHW
Not in a motif group
homologous
IL_4WF9_099
IL_04638.1
IL_4V9M_1691/BA/2652:2658,
1/BA/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
geometric
IL_7RQB_103
IL_16458.1
IL_4V9M_1701/BA/2680:2684,
1/BA/2725:2727
C-loop
Not in a motif group
homologous
IL_7RQB_104
IL_63596.6
IL_4V9M_1711/BA/2687:2691,
1/BA/2718:2722
No text annotation
Not in a motif group
homologous
IL_7RQB_105
IL_08296.3
IL_4V9M_1721/BA/2695:2696,
1/BA/2711:2714
Multiple bulged bases
Not in a motif group
geometric
IL_5TBW_119
IL_71530.2
IL_4V9M_1731/BA/2737:2742,
1/BA/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_7RQB_107
IL_49767.5
IL_4V9M_1741/BA/2838:2839,
1/BA/2878:2880
Single bulged C
Not in a motif group
homologous
IL_7RQB_108
IL_61258.12
IL_4V9M_1751/BA/2843:2846,
1/BA/2870:2874
No text annotation
Not in a motif group
homologous
IL_7RQB_109
IL_58764.3
IL_4V9M_1761/BA/2847:2852,
1/BA/2865:2869
No text annotation
Not in a motif group
homologous
IL_5J7L_354
IL_83162.5
IL_4V9M_1771/BB/8:10,
1/BB/110:112
No text annotation
Not in a motif group
geometric
IL_3ICQ_003
IL_51629.2
IL_4V9M_1781/BB/17:18,
1/BB/65:67
Major groove intercalation
Not in a motif group
homologous
IL_4V9F_101
IL_37497.2
IL_4V9M_1791/BB/23:28,
1/BB/56:60
No text annotation
Not in a motif group
homologous
IL_7RQB_112
NA
IL_4V9M_1801/BB/30:31,
1/BB/51:54
No text annotation
Not in a motif group
IL_4V9M_1811/BB/34:38,
1/BB/44:48
Symmetric double minor groove platform
Not in a motif group
homologous
IL_7RQB_114
IL_58103.6
IL_4V9M_1821/BB/71:79,
1/BB/97:105
Bacterial 5S Loop E
Not in a motif group
homologous
IL_7RQB_115
IL_56455.3
IL_4V9M_1831/BB/80:82,
1/BB/94:96
No text annotation
Not in a motif group
geometric
IL_7A0S_107
IL_51629.2
IL_4V9M_1841/CA/30:33,
1/CA/551:553
No text annotation
Not in a motif group
geometric
IL_3LA5_001
IL_95997.1
IL_4V9M_1851/CA/44:45,
1/CA/396:398
Single bulged A
Not in a motif group
homologous
IL_4LFB_002
IL_37497.2
IL_4V9M_1861/CA/47:52,
1/CA/359:361
No text annotation
Not in a motif group
homologous
IL_4LFB_003
IL_11178.1
IL_4V9M_1871/CA/54:56,
1/CA/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_93353.1
IL_4V9M_1881/CA/63:66,
1/CA/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_005
IL_76389.1
IL_4V9M_1891/CA/67:68A,
1/CA/68Y:102
No text annotation
Not in a motif group
homologous
IL_4LFB_006
IL_95997.1
IL_4V9M_1901/CA/68A:68C,
1/CA/68W:68Y
No text annotation
Not in a motif group
geometric
IL_5TBW_016
IL_51629.2
IL_4V9M_1911/CA/68D:68F,
1/CA/68T:68V
Isolated near basepair
Not in a motif group
geometric
IL_4V88_406
IL_52767.2
IL_4V9M_1921/CA/129:131,
1/CA/231:232
Multiple bulged bases
Not in a motif group
homologous
IL_6CZR_119
IL_16396.2
IL_4V9M_1931/CA/132:136,
1/CA/227:230
No text annotation
Not in a motif group
homologous
IL_4LFB_008
IL_58764.3
IL_4V9M_1941/CA/148:153,
1/CA/168:174
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_4LFB_009
IL_39753.1
IL_4V9M_1951/CA/186:186B,
1/CA/186O:191
No text annotation
Not in a motif group
homologous
IL_4LFB_010
IL_95997.1
IL_4V9M_1961/CA/242:247,
1/CA/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4LFB_011
IL_45067.2
IL_4V9M_1971/CA/249:252,
1/CA/274:275
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_48100.2
IL_4V9M_1981/CA/292:293,
1/CA/304:308
C-loop
Not in a motif group
homologous
IL_6CZR_125
IL_37712.2
IL_4V9M_1991/CA/367:369,
1/CA/392:393
Single bulged U
Not in a motif group
homologous
IL_4LFB_014
IL_83039.13
IL_4V9M_2001/CA/371:375,
1/CA/389:390
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_4V9M_2011/CA/375:376,
1/CA/387:389
Single bulged G
Not in a motif group
homologous
IL_4LFB_016
IL_00225.2
IL_4V9M_2031/CA/409:417,
1/CA/426:433
No text annotation
Not in a motif group
homologous
IL_6CZR_129
IL_58819.1
IL_4V9M_2041/CA/446:450,
1/CA/483:488
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_4LFB_018
IL_88269.3
IL_4V9M_2051/CA/450:455,
1/CA/477:483
No text annotation
Not in a motif group
homologous
IL_4LFB_019
IL_11882.1
IL_4V9M_2061/CA/504:511,
1/CA/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4LFB_020
IL_15861.7
IL_4V9M_2071/CA/515:521,
1/CA/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_4V9M_2081/CA/569:575,
1/CA/880:881
No text annotation
Not in a motif group
homologous
IL_6CZR_134
IL_69996.1
IL_4V9M_2091/CA/580:584,
1/CA/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_023
IL_17136.1
IL_4V9M_2101/CA/594:596,
1/CA/644:645
Major groove platform
Not in a motif group
homologous
IL_5J7L_028
IL_27635.1
IL_4V9M_2111/CA/597:598,
1/CA/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.6
IL_4V9M_2121/CA/605:612,
1/CA/628:633
No text annotation
Not in a motif group
homologous
IL_4LFB_026
IL_78349.1
IL_4V9M_2131/CA/654:655,
1/CA/751:754
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_5J7L_031
IL_50694.2
IL_4V9M_2141/CA/657:658,
1/CA/747:749
Major groove platform
Not in a motif group
homologous
IL_4LFB_028
IL_27635.1
IL_4V9M_2151/CA/662:666,
1/CA/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_6CZR_141
IL_71110.1
IL_4V9M_2161/CA/673:678,
1/CA/712:717
No text annotation
Not in a motif group
homologous
IL_4LFB_030
IL_04668.1
IL_4V9M_2171/CA/683:688,
1/CA/699:707
Kink-turn
Not in a motif group
homologous
IL_4LFB_031
IL_37722.1
IL_4V9M_2181/CA/774:778,
1/CA/804:805
Left turn
Not in a motif group
homologous
IL_4LFB_032
IL_29346.1
IL_4V9M_2191/CA/779:783,
1/CA/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_037
IL_17136.1
IL_4V9M_2201/CA/887:894,
1/CA/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4LFB_034
IL_24606.2
IL_4V9M_2231/CA/933:935,
1/CA/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_5J7L_041
IL_47078.1
IL_4V9M_2241/CA/952:954,
1/CA/1226:1229
No text annotation
Not in a motif group
geometric
IL_7A0S_092
IL_82842.2
IL_4V9M_2251/CA/1048:1050,
1/CA/1208:1209
No text annotation
Not in a motif group
homologous
IL_6CZR_152
NA
IL_4V9M_2261/CA/1052:1056,
1/CA/1204:1206
Isolated cWS basepair
Not in a motif group
homologous
IL_4LFB_044
IL_76319.2
IL_4V9M_2271/CA/1057:1058,
1/CA/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_93353.1
IL_4V9M_2291/CA/1061:1063,
1/CA/1193:1195
UU cWW
Not in a motif group
geometric
IL_1UN6_005
IL_95997.1
IL_4V9M_2311/CA/1124:1127,
1/CA/1145:1149
No text annotation
Not in a motif group
IL_4V9M_2321/CA/1127:1128,
1/CA/1143:1145
Single stack bend
Not in a motif group
geometric
IL_7A0S_054
IL_76488.2
IL_4V9M_2331/CA/1128:1132,
1/CA/1142:1143
Minor groove platform
Not in a motif group
geometric
IL_5J7L_007
IL_15052.1
IL_4V9M_2341/CA/1158:1161,
1/CA/1175:1181
No text annotation
Not in a motif group
geometric
IL_5J7L_053
IL_42032.1
IL_4V9M_2351/CA/1246:1253,
1/CA/1284:1291
No text annotation
Not in a motif group
IL_4V9M_2361/CA/1255:1258,
1/CA/1277:1282
No text annotation
Not in a motif group
homologous
IL_4LFB_052
IL_84205.1
IL_4V9M_2371/CA/1259:1260,
1/CA/1274:1276
Not an internal loop
Not in a motif group
geometric
IL_4LFB_053
IL_93353.1
IL_4V9M_2381/CA/1260:1262,
1/CA/1273:1274
Minor groove platform
Not in a motif group
homologous
IL_4LFB_054
IL_93353.1
IL_4V9M_2391/CA/1303:1308,
1/CA/1329:1334
No text annotation
Not in a motif group
geometric
IL_4LFB_055
IL_19954.2
IL_4V9M_2401/CA/1399:1401,
1/CA/1501:1504
No text annotation
Not in a motif group
geometric
IL_4V88_463
IL_36143.3
IL_4V9M_2411/CA/1401:1404,
1/CA/1497:1501
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_4V9M_2421/CA/1405:1407,
1/CA/1494:1496
No text annotation
Not in a motif group
geometric
IL_4V88_465
IL_95997.1
IL_4V9M_2431/CA/1407:1410,
1/CA/1490:1494
No text annotation
Not in a motif group
IL_4V9M_2441/CA/1412:1414,
1/CA/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_4V9M_2451/CA/1416:1419,
1/CA/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.9
IL_4V9M_2461/CA/1431:1435,
1/CA/1466:1469
UAA/GAN variation
Not in a motif group
geometric
IL_4LFB_062
IL_07235.1
IL_4V9M_2471/CA/1435:1437,
1/CA/1464:1466
No text annotation
Not in a motif group
homologous
IL_4LFB_063
IL_95997.1
IL_4V9M_2481/CA/1440:1440E,
1/CA/1440N:1461
Isolated basepair with bulged bases
Not in a motif group
homologous
IL_6CZR_172
IL_92788.2
IL_4V9M_2491/CW/50:52,
1/CW/62:64
No text annotation
Not in a motif group
homologous
IL_4V9K_064
IL_95997.1
IL_4V9M_2501/DA/24:30,
1/DA/510:516
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_7RQB_001
IL_66414.6
IL_4V9M_2511/DA/36:37,
1/DA/442:444
Single bulged A
Not in a motif group
homologous
IL_7A0S_002
IL_37497.2
IL_4V9M_2521/DA/43:44,
1/DA/434:436
Minor groove platform
Not in a motif group
homologous
IL_5J7L_247
IL_42622.2
IL_4V9M_2531/DA/55:56,
1/DA/114:115
No text annotation
Not in a motif group
IL_4V9M_2541/DA/81:85,
1/DA/97:105
Kink-turn
Not in a motif group
homologous
IL_7RQB_004
IL_45067.2
IL_4V9M_2551/DA/122:123,
1/DA/128:129
No text annotation
Not in a motif group
IL_4V9M_2561/DA/134:135,
1/DA/144:145
No text annotation
Not in a motif group
IL_4V9M_2571/DA/154:155,
1/DA/171:172
No text annotation
Not in a motif group
IL_4V9M_2581/DA/183:184,
1/DA/212:214
Single stack bend
Not in a motif group
homologous
IL_7RQB_005
IL_76488.2
IL_4V9M_2591/DA/188:194,
1/DA/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_7RQB_006
IL_04346.7
IL_4V9M_2601/DA/239:245,
1/DA/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_007
IL_76042.2
IL_4V9M_2621/DA/273A:273B,
1/DA/363F:364
Major groove platform
Not in a motif group
homologous
IL_7RQB_009
IL_27635.1
IL_4V9M_2631/DA/273G:278,
1/DA/362:363A
No text annotation
Not in a motif group
IL_4V9M_2641/DA/280:284,
1/DA/357:360
tSH-tHW
Not in a motif group
homologous
IL_7RQB_011
IL_04059.1
IL_4V9M_2651/DA/288:291,
1/DA/349:353
No text annotation
Not in a motif group
IL_4V9M_2661/DA/293:295,
1/DA/343:347
No text annotation
Not in a motif group
homologous
IL_7RQB_013
IL_69440.1
IL_4V9M_2671/DA/481:484,
1/DA/496:509
No text annotation
Not in a motif group
homologous
IL_7A0S_009
IL_60992.6
IL_4V9M_2681/DA/564:566,
1/DA/575:577
No text annotation
Not in a motif group
homologous
IL_4WF9_017
IL_95997.1
IL_4V9M_2691/DA/606:609B,
1/DA/618B:622
AAA cross-strand stack
Not in a motif group
homologous
IL_7RQB_016
IL_17136.1
IL_4V9M_2701/DA/672:674,
1/DA/806:808
No text annotation
Not in a motif group
homologous
IL_5J7L_259
IL_95997.1
IL_4V9M_2711/DA/674:678,
1/DA/799:806
tHW-tHW cross-strand stack
Not in a motif group
geometric
IL_4WF9_021
IL_17470.6
IL_4V9M_2721/DA/697:698,
1/DA/763:765
Single bulged A
Not in a motif group
geometric
IL_4V9F_025
IL_37497.2
IL_4V9M_2731/DA/702:703,
1/DA/728:730
Single bulged G
Not in a motif group
geometric
IL_7A0S_017
IL_00225.2
IL_4V9M_2741/DA/703:707,
1/DA/724:728
Triple sheared
Not in a motif group
homologous
IL_7RQB_021
IL_56467.8
IL_4V9M_2751/DA/738:741,
1/DA/756:758
Major groove platform with extra cWW
Not in a motif group
homologous
IL_7RQB_022
IL_05564.2
IL_4V9M_2761/DA/775:777,
1/DA/787:791
Multiple bulged bases
Not in a motif group
geometric
IL_7RQB_023
IL_90991.6
IL_4V9M_2771/DA/837:838,
1/DA/940:942
Single stack bend
Not in a motif group
homologous
IL_7A0S_022
IL_92001.1
IL_4V9M_2781/DA/844:846,
1/DA/931:934
Intercalated cWW
Not in a motif group
homologous
IL_7RQB_025
IL_52767.2
IL_4V9M_2791/DA/846:850,
1/DA/928:931
No text annotation
Not in a motif group
geometric
IL_7RQB_026
IL_94165.1
IL_4V9M_2801/DA/858:862,
1/DA/915:919
5x5 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_4V9F_033
IL_38862.1
IL_4V9M_2811/DA/862:863,
1/DA/913:915
Minor groove platform
Not in a motif group
homologous
IL_7RQB_028
IL_42622.2
IL_4V9M_2821/DA/864:868,
1/DA/909:912
C-loop
Not in a motif group
homologous
IL_7RQB_029
IL_02509.1
IL_4V9M_2831/DA/870:872,
1/DA/905:907
Isolated cWS basepair
Not in a motif group
homologous
IL_7RQB_030
IL_52767.2
IL_4V9M_2841/DA/875:877,
1/DA/899:902
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_7RQB_031
IL_46796.1
IL_4V9M_2851/DA/877:879,
1/DA/898:899
Minor groove platform
Not in a motif group
geometric
IL_4V88_412
IL_93353.1
IL_4V9M_2861/DA/880:881,
1/DA/895:897
Single bulged A
Not in a motif group
homologous
IL_7RQB_033
IL_37497.2
IL_4V9M_2871/DA/952:954,
1/DA/963:965
No text annotation
Not in a motif group
homologous
IL_7RQB_034
IL_95997.1
IL_4V9M_2881/DA/994:996,
1/DA/1159:1160
Single bulged C
Not in a motif group
homologous
IL_5J7L_276
IL_61258.12
IL_4V9M_2891/DA/998:1002,
1/DA/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_5J7L_277
IL_89002.2
IL_4V9M_2901/DA/1004:1011,
1/DA/1150:1151
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_7RQB_037
IL_15861.7
IL_4V9M_2911/DA/1011:1013,
1/DA/1149:1150
Single bulged U
Not in a motif group
geometric
IL_5J7L_279
IL_83039.13
IL_4V9M_2931/DA/1018:1024,
1/DA/1140:1144
No text annotation
Not in a motif group
IL_4V9M_2941/DA/1024:1030,
1/DA/1124:1140
No text annotation
Not in a motif group
geometric
IL_7RQB_040
IL_50715.1
IL_4V9M_2951/DA/1031:1034,
1/DA/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_282
IL_82068.2
IL_4V9M_2961/DA/1043:1051,
1/DA/1108:1112
Kink-turn
Not in a motif group
homologous
IL_5J7L_284
IL_90538.4
IL_4V9M_2991/DA/1197:1198,
1/DA/1247:1249
No text annotation
Not in a motif group
IL_4V9M_3001/DA/1202:1206,
1/DA/1240:1243
No text annotation
Not in a motif group
homologous
IL_7RQB_046
IL_68574.2
IL_4V9M_3011/DA/1208:1216,
1/DA/1233:1238
No text annotation
Not in a motif group
IL_4V9M_3021/DA/1219:1221,
1/DA/1229:1230
Single bulged A
Not in a motif group
homologous
IL_7RQB_048
IL_37497.2
IL_4V9M_3031/DA/1221:1222,
1/DA/1227:1229
Not an internal loop
Not in a motif group
geometric
IL_5VCI_005
IL_82842.2
IL_4V9M_3041/DA/1262:1269,
1/DA/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_049
IL_04346.7
IL_4V9M_3051/DA/1310:1313,
1/DA/1603:1604
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_050
IL_50694.2
IL_4V9M_3071/DA/1319:1323,
1/DA/1331:1333
C-loop
Not in a motif group
homologous
IL_7RQB_051
IL_63596.6
IL_4V9M_3081/DA/1351:1355,
1/DA/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_7RQB_052
IL_89002.2
IL_4V9M_3091/DA/1357:1361,
1/DA/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_4WF9_052
IL_17136.1
IL_4V9M_3101/DA/1415:1416,
1/DA/1582:1587
No text annotation
Not in a motif group
homologous
IL_7RQB_054
IL_67474.4
IL_4V9M_3111/DA/1417:1421,
1/DA/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_5J7L_295
IL_89002.2
IL_4V9M_3121/DA/1433:1435,
1/DA/1557:1560
No text annotation
Not in a motif group
homologous
IL_7A0S_052
IL_55351.2
IL_4V9M_3131/DA/1437:1440,
1/DA/1551:1555
tSH-tHW
Not in a motif group
homologous
IL_7RQB_057
IL_04059.1
IL_4V9M_3141/DA/1469:1473,
1/DA/1520:1523
UAA/GAN
Not in a motif group
homologous
IL_7RQB_060
IL_07235.1
IL_4V9M_3151/DA/1481:1483,
1/DA/1506:1512
No text annotation
Not in a motif group
homologous
IL_7RQB_061
IL_52493.1
IL_4V9M_3161/DA/1489:1491,
1/DA/1499:1500
Single bulged A
Not in a motif group
homologous
IL_7RQB_062
IL_37497.2
IL_4V9M_3171/DA/1651:1656,
1/DA/2004:2006
No text annotation
Not in a motif group
homologous
IL_4WF9_062
IL_12566.2
IL_4V9M_3181/DA/1663:1665,
1/DA/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_5J7L_305
IL_54997.7
IL_4V9M_3191/DA/1666:1669,
1/DA/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_7RQB_066
IL_50694.2
IL_4V9M_3201/DA/1669:1674,
1/DA/1990:1993
Intercalated tWH
Not in a motif group
homologous
IL_7A0S_062
IL_82842.2
IL_4V9M_3211/DA/1686:1691,
1/DA/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
homologous
IL_5J7L_308
IL_65969.2
IL_4V9M_3221/DA/1770:1771,
1/DA/1980:1982
Single bulged A
Not in a motif group
homologous
IL_7RQB_069
IL_37497.2
IL_4V9M_3231/DA/1798:1804,
1/DA/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_7A0S_065
IL_17069.3
IL_4V9M_3241/DA/1837:1840,
1/DA/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_7RQB_071
IL_88739.1
IL_4V9M_3251/DA/1841:1843,
1/DA/1897:1901
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_4V9F_097
IL_82068.2
IL_4V9M_3261/DA/1846:1849,
1/DA/1893:1894
Minor groove platform
Not in a motif group
homologous
IL_7RQB_073
IL_88739.1
IL_4V9M_3271/DA/1851:1855,
1/DA/1887:1891
UAA/GAN with extra pair
Not in a motif group
homologous
IL_7A0S_069
IL_90318.1
IL_4V9M_3281/DA/1856:1860,
1/DA/1882:1886
Triple sheared
Not in a motif group
homologous
IL_7RQB_075
IL_56467.8
IL_4V9M_3291/DA/1933:1934,
1/DA/1964:1967
Multiple bulged bases
Not in a motif group
geometric
IL_7A0S_071
IL_59677.2
IL_4V9M_3301/DA/1934:1945,
1/DA/1961:1964
No text annotation
Not in a motif group
homologous
IL_4WF9_077
IL_81589.2
IL_4V9M_3311/DA/2050:2052,
1/DA/2617:2618
Major groove platform
Not in a motif group
homologous
IL_7A0S_073
IL_27635.1
IL_4V9M_3321/DA/2054:2057,
1/DA/2611:2615
No text annotation
Not in a motif group
homologous
IL_7RQB_079
IL_01206.1
IL_4V9M_3331/DA/2067:2069,
1/DA/2442:2443
Single bulged U
Not in a motif group
homologous
IL_7A0S_075
IL_83039.13
IL_4V9M_3341/DA/2070:2071,
1/DA/2438:2441
Minor groove platform
Not in a motif group
homologous
IL_5J7L_324
IL_42622.2
IL_4V9M_3351/DA/2081:2083,
1/DA/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_082
IL_38958.7
IL_4V9M_3361/DA/2085:2087,
1/DA/2232:2234
No text annotation
Not in a motif group
homologous
IL_7RQB_083
IL_95997.1
IL_4V9M_3411/DA/2297:2299,
1/DA/2317:2321
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_088
IL_38958.7
IL_4V9M_3421/DA/2350:2353,
1/DA/2364:2367
Double sheared
Not in a motif group
homologous
IL_7RQB_089
IL_09705.9
IL_4V9M_3431/DA/2401:2403,
1/DA/2414:2415
Single bulged U
Not in a motif group
homologous
IL_5J7L_334
IL_83039.13
IL_4V9M_3441/DA/2453:2454,
1/DA/2498:2500
Single stack bend
Not in a motif group
homologous
IL_4WF9_089
IL_76488.2
IL_4V9M_3451/DA/2454:2455,
1/DA/2496:2498
Major groove platform
Not in a motif group
geometric
IL_1I6U_001
IL_27635.1
IL_4V9M_3461/DA/2457:2459,
1/DA/2493:2494
Major groove platform
Not in a motif group
homologous
IL_7A0S_085
IL_27635.1
IL_4V9M_3471/DA/2459:2461,
1/DA/2489:2493
Major groove minor groove platform with extra cWW
Not in a motif group
geometric
IL_4V9F_084
IL_92788.2
IL_4V9M_3481/DA/2466:2470,
1/DA/2480:2484
Triple sheared
Not in a motif group
homologous
IL_5J7L_338
IL_56467.8
IL_4V9M_3491/DA/2507:2508,
1/DA/2580:2582
Major groove platform
Not in a motif group
homologous
IL_4WF9_094
IL_76223.2
IL_4V9M_3501/DA/2510:2512,
1/DA/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5J7L_340
IL_90933.2
IL_4V9M_3511/DA/2512:2513,
1/DA/2571:2574
No text annotation
Not in a motif group
homologous
IL_5J7L_341
IL_71530.2
IL_4V9M_3521/DA/2522:2523,
1/DA/2540:2543
Minor groove platform with intercalation
Not in a motif group
homologous
IL_4WF9_097
IL_95601.3
IL_4V9M_3531/DA/2591:2592,
1/DA/2601:2603
Single bulged A
Not in a motif group
homologous
IL_7RQB_101
IL_37497.2
IL_4V9M_3541/DA/2636:2640,
1/DA/2774:2782
tSH-tHS-tHW
Not in a motif group
homologous
IL_4WF9_099
IL_04638.1
IL_4V9M_3551/DA/2652:2658,
1/DA/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
geometric
IL_5J7L_346
IL_16458.1
IL_4V9M_3561/DA/2680:2684,
1/DA/2725:2727
C-loop
Not in a motif group
homologous
IL_7RQB_104
IL_63596.6
IL_4V9M_3571/DA/2687:2691,
1/DA/2718:2722
No text annotation
Not in a motif group
homologous
IL_7A0S_096
IL_08296.3
IL_4V9M_3581/DA/2695:2696,
1/DA/2711:2714
Multiple bulged bases
Not in a motif group
geometric
IL_5TBW_119
IL_71530.2
IL_4V9M_3591/DA/2737:2742,
1/DA/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_7RQB_107
IL_49767.5
IL_4V9M_3601/DA/2838:2839,
1/DA/2878:2880
Single bulged C
Not in a motif group
homologous
IL_7RQB_108
IL_61258.12
IL_4V9M_3611/DA/2843:2845,
1/DA/2871:2874
No text annotation
Not in a motif group
IL_4V9M_3621/DA/2847:2852,
1/DA/2865:2869
No text annotation
Not in a motif group
homologous
IL_5J7L_354
IL_83162.5
IL_4V9M_3631/DB/17:18,
1/DB/65:67
Major groove intercalation
Not in a motif group
homologous
IL_4V9F_101
IL_37497.2
IL_4V9M_3641/DB/23:28,
1/DB/56:60
No text annotation
Not in a motif group
homologous
IL_7RQB_112
NA
IL_4V9M_3651/DB/30:31,
1/DB/51:54
Minor groove platform
Not in a motif group
geometric
IL_3IWN_005
IL_15052.1
IL_4V9M_3661/DB/34:38,
1/DB/44:48
Symmetric double minor groove platform
Not in a motif group
homologous
IL_7RQB_114
IL_58103.6
IL_4V9M_3671/DB/71:79,
1/DB/97:105
Bacterial 5S Loop E
Not in a motif group
homologous
IL_7RQB_115
IL_56455.3
IL_4V9M_3681/DB/80:82,
1/DB/94:96
No text annotation
Not in a motif group
geometric
IL_7A0S_107
IL_51629.2

Problematic loops

#loop idProblemSequence
IL_4V9M_002No text annotation
IL_4V9M_015C-loop
IL_4V9M_019No text annotation
IL_4V9M_078No text annotation
IL_4V9M_112No text annotation
IL_4V9M_113No text annotation
IL_4V9M_151No text annotation
IL_4V9M_152No text annotation
IL_4V9M_153No text annotation
IL_4V9M_154Kink-turn
IL_4V9M_156No text annotation
IL_4V9M_202No text annotation
IL_4V9M_221Single bulged A
IL_4V9M_222Single bulged G
IL_4V9M_228Single bulged U
IL_4V9M_230No text annotation
IL_4V9M_261No text annotation
IL_4V9M_292No text annotation
IL_4V9M_297No text annotation
IL_4V9M_298Major groove platform with extra cWW
IL_4V9M_306No text annotation
IL_4V9M_337No text annotation
IL_4V9M_338No text annotation
IL_4V9M_339No text annotation
IL_4V9M_340Kink-turn

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4V9M_0011/AA/826:829,
1/AA/857:861,
1/AA/868:874
No text annotation
Not in a motif group
homologous
J3_4LFB_001
NA
J3_4V9M_0021/AA/943:946,
1/AA/1235:1237,
1/AA/1337:1340
No text annotation
Not in a motif group
homologous
J3_5J7L_005
NA
J3_4V9M_0031/AA/955:962,
1/AA/973:984,
1/AA/1221:1225
No text annotation
Not in a motif group
J3_4V9M_0041/AA/990:993,
1/AA/1045:1047,
1/AA/1210:1215
No text annotation
Not in a motif group
homologous
J3_4LFB_005
NA
J3_4V9M_0051/AA/1003:1006,
1/AA/1023:1027,
1/AA/1034:1037
No text annotation
Not in a motif group
J3_4V9M_0061/AA/1063:1068,
1/AA/1107:1113,
1/AA/1187:1193
No text annotation
Not in a motif group
J3_4V9M_0071/AA/1116:1118,
1/AA/1155:1158,
1/AA/1181:1184
No text annotation
Not in a motif group
homologous
J3_4LFB_008
NA
J3_4V9M_0081/AA/1237:1241,
1/AA/1296:1303,
1/AA/1334:1337
No text annotation
Not in a motif group
J3_4V9M_0091/BA/683:689,
1/BA/773:775,
1/BA/791:794
No text annotation
Not in a motif group
J3_4V9M_0101/BA/698:700,
1/BA/732:736,
1/BA/760:763
No text annotation
Not in a motif group
J3_4V9M_0121/BA/1298:1303,
1/BA/1625:1627,
1/BA/1639:1642
No text annotation
Not in a motif group
homologous
J3_7RQB_007
NA
J3_4V9M_0131/BA/1306:1309,
1/BA/1605:1611,
1/BA/1620:1622
No text annotation
Not in a motif group
homologous
J3_7RQB_008
NA
J3_4V9M_0141/BA/2091:2093,
1/BA/2196:2205,
1/BA/2219:2228
No text annotation
Not in a motif group
homologous
J3_7RQB_010
NA
J3_4V9M_0151/BA/2295:2297,
1/BA/2321:2323,
1/BA/2332:2337
No text annotation
Not in a motif group
J3_4V9M_0161/BA/2517:2520,
1/BA/2545:2547,
1/BA/2561:2567
No text annotation
Not in a motif group
homologous
J3_7RQB_012
NA
J3_4V9M_0171/CA/826:829,
1/CA/857:861,
1/CA/868:874
No text annotation
Not in a motif group
homologous
J3_4LFB_001
NA
J3_4V9M_0181/CA/943:946,
1/CA/1235:1237,
1/CA/1337:1340
No text annotation
Not in a motif group
J3_4V9M_0191/CA/955:962,
1/CA/973:984,
1/CA/1221:1225
No text annotation
Not in a motif group
J3_4V9M_0201/CA/990:997,
1/CA/1044:1047,
1/CA/1210:1215
No text annotation
Not in a motif group
J3_4V9M_0211/CA/1003:1006,
1/CA/1023:1027,
1/CA/1034:1037
No text annotation
Not in a motif group
J3_4V9M_0221/CA/1063:1068,
1/CA/1107:1113,
1/CA/1187:1193
No text annotation
Not in a motif group
J3_4V9M_0231/CA/1116:1118,
1/CA/1155:1158,
1/CA/1181:1184
No text annotation
Not in a motif group
homologous
J3_4LFB_008
NA
J3_4V9M_0241/CA/1237:1241,
1/CA/1296:1303,
1/CA/1334:1337
No text annotation
Not in a motif group
homologous
J3_4LFB_009
NA
J3_4V9M_0251/DA/683:689,
1/DA/773:775,
1/DA/791:794
No text annotation
Not in a motif group
homologous
J3_7A0S_004
NA
J3_4V9M_0261/DA/698:700,
1/DA/732:736,
1/DA/760:763
No text annotation
Not in a motif group
homologous
J3_7A0S_005
NA
J3_4V9M_0281/DA/1298:1303,
1/DA/1625:1627,
1/DA/1639:1642
No text annotation
Not in a motif group
homologous
J3_7RQB_007
NA
J3_4V9M_0291/DA/1306:1309,
1/DA/1605:1611,
1/DA/1620:1622
No text annotation
Not in a motif group
homologous
J3_5J7L_042
NA
J3_4V9M_0301/DA/2091:2093,
1/DA/2196:2205,
1/DA/2219:2228
No text annotation
Not in a motif group
homologous
J3_7RQB_010
NA
J3_4V9M_0311/DA/2295:2297,
1/DA/2321:2323,
1/DA/2332:2337
No text annotation
Not in a motif group
J3_4V9M_0321/DA/2517:2520,
1/DA/2545:2547,
1/DA/2561:2567
No text annotation
Not in a motif group
homologous
J3_7RQB_012
NA

Problematic loops

#loop idProblemSequence
J3_4V9M_011No text annotation
J3_4V9M_027No text annotation

Coloring options:
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