4V9M Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/AA/12:22 | NA | NA | ||
| 1/AA/68J:68P | NA | NA | ||
| 1/AA/158:163 | NA | NA | ||
| 1/AA/186F:186K | NA | NA | ||
| 1/AA/201:216 | NA | NA | ||
| 1/AA/259:267 | NA | NA | ||
| 1/AA/296:301 | NA | NA | ||
| 1/AA/320:333 | NA | NA | ||
| 1/AA/342:347 | NA | NA | ||
| 1/AA/379:384 | NA | NA | ||
| 1/AA/419:424 | NA | NA | ||
| 1/AA/458:474 | NA | NA | ||
| 1/AA/522:527 | NA | NA | ||
| 1/AA/617:623 | NA | NA | ||
| 1/AA/689:698 | NA | NA | ||
| 1/AA/726:731 | NA | NA | ||
| 1/AA/786:796 | NA | NA | ||
| 1/AA/838:848 | NA | NA | ||
| 1/AA/862:867 | NA | NA | ||
| 1/AA/897:902 | NA | NA | ||
| 1/AA/963:972 | NA | NA | ||
| 1/AA/1012:1017 | NA | NA | ||
| 1/AA/1028B:1028G | NA | NA | ||
| 1/AA/1076:1081 | NA | NA | ||
| 1/AA/1089:1096 | NA | NA | ||
| 1/AA/1134:1140 | NA | NA | ||
| 1/AA/1165:1171 | NA | NA | ||
| 1/AA/1265:1270 | NA | NA | ||
| 1/AA/1314:1323 | NA | NA | ||
| 1/AA/1356:1366 | NA | NA | ||
| 1/AA/1440G:1440L | NA | NA | ||
| 1/AA/1515:1520 | NA | NA | ||
| 1/AW/12:23 | NA | NA | ||
| 1/AW/31:39 | NA | NA | ||
| 1/AW/53:61 | NA | NA | ||
| 1/BA/59:68 | homologous HL_7RQB_001 | NA HL_29414.1* | ||
| 1/BA/87:95 | homologous HL_7RQB_002 | NA HL_17926.5* | ||
| 1/BA/123:128 | homologous HL_7RQB_003 | NA HL_62869.3* | ||
| 1/BA/137B:141B | NA | NA | ||
| 1/BA/155:171 | NA | NA | ||
| 1/BA/194:201 | geometric HL_4WF9_006 | NA HL_23481.5* | ||
| 1/BA/225:230 | homologous HL_7RQB_007 | NA HL_06569.2* | ||
| 1/BA/246:252 | homologous HL_7RQB_008 | NA HL_67216.5* | ||
| 1/BA/270K:270Q | geometric HL_5TBW_012 | NA HL_94386.1* | ||
| 1/BA/305:312 | homologous HL_7RQB_010 | NA HL_68493.6* | ||
| 1/BA/319:323 | homologous HL_7RQB_011 | NA HL_98557.5* | ||
| 1/BA/327:335 | homologous HL_7RQB_012 | NA HL_08002.6* | ||
| 1/BA/382:392 | homologous HL_7RQB_013 | NA HL_91503.3* | ||
| 1/BA/410:417 | homologous HL_7RQB_014 | NA HL_32512.8* | ||
| 1/BA/462:467 | homologous HL_7RQB_015 | NA HL_43074.18* | ||
| 1/BA/487:493 | homologous HL_7RQB_016 | NA HL_43074.18* | ||
| 1/BA/544:549 | GNRA geometric HL_5J7L_007 | NA HL_43074.18* | ||
| 1/BA/566:575 | geometric HL_7RQB_018 | NA HL_33239.17* | ||
| 1/BA/611:617 | homologous HL_7RQB_019 | NA HL_49196.4* | ||
| 1/BA/629:634 | homologous HL_7RQB_020 | NA HL_43074.18* | ||
| 1/BA/641:647 | GNRA geometric HL_5TBW_023 | NA HL_43074.18* | ||
| 1/BA/712:719 | homologous HL_7RQB_022 | NA HL_93727.5* | ||
| 1/BA/744:753 | homologous HL_7RQB_023 | NA HL_39334.5* | ||
| 1/BA/779:785 | geometric HL_5U3G_001 | NA HL_40469.1* | ||
| 1/BA/826:831 | homologous HL_7RQB_025 | NA HL_15942.5* | ||
| 1/BA/884:892 | NA | NA | ||
| 1/BA/955:962 | homologous HL_7RQB_027 | NA HL_43074.18* | ||
| 1/BA/978:985 | homologous HL_7RQB_028 | NA HL_72451.5* | ||
| 1/BA/1171:1178 | geometric HL_361D_002 | NA HL_18218.2* | ||
| 1/BA/1222:1227 | homologous HL_7RQB_032 | NA HL_43074.18* | ||
| 1/BA/1281:1289 | homologous HL_7RQB_033 | NA HL_33239.17* | ||
| 1/BA/1324:1330 | homologous HL_7RQB_034 | NA HL_86880.5* | ||
| 1/BA/1363:1368 | homologous HL_7RQB_035 | NA HL_43074.18* | ||
| 1/BA/1389:1398 | homologous HL_7RQB_036 | NA HL_78457.4* | ||
| 1/BA/1450:1461 | NA | NA | ||
| 1/BA/1492:1498 | NA | NA | ||
| 1/BA/1533:1538 | geometric HL_4WF9_003 | NA HL_62869.3* | ||
| 1/BA/1565:1568 | homologous HL_7RQB_039 | NA HL_69353.7* | ||
| 1/BA/1612:1619 | homologous HL_7RQB_040 | NA HL_66171.3* | ||
| 1/BA/1630:1636 | NA | NA | ||
| 1/BA/1691:1696 | geometric HL_6CZR_080 | NA HL_79299.11* | ||
| 1/BA/1727:1733 | homologous HL_7RQB_043 | NA HL_49638.1* | ||
| 1/BA/1752:1756 | homologous HL_7RQB_044 | NA HL_79272.3* | ||
| 1/BA/1777:1787 | homologous HL_7RQB_045 | NA HL_43613.4* | ||
| 1/BA/1806:1811 | homologous HL_7RQB_046 | NA HL_43074.18* | ||
| 1/BA/1864:1878 | homologous HL_7RQB_047 | NA HL_43074.18* | ||
| 1/BA/1910:1920 | geometric HL_5TBW_049 | NA HL_98248.1* | ||
| 1/BA/1949:1957 | homologous HL_7RQB_049 | NA HL_53760.4* | ||
| 1/BA/2027:2036 | homologous HL_7RQB_050 | NA HL_90642.5* | ||
| 1/BA/2209:2215 | geometric HL_6U8D_003 | NA HL_18722.3* | ||
| 1/BA/2248:2256 | homologous HL_7RQB_053 | NA | ||
| 1/BA/2264:2276 | homologous HL_7RQB_054 | NA HL_19870.5* | ||
| 1/BA/2304:2312 | NA | NA | ||
| 1/BA/2324:2331 | homologous HL_7RQB_056 | NA HL_46142.8* | ||
| 1/BA/2355:2362 | homologous HL_7RQB_057 | NA HL_93727.5* | ||
| 1/BA/2374:2379 | homologous HL_7RQB_058 | NA HL_43074.18* | ||
| 1/BA/2404:2413 | homologous HL_7RQB_059 | NA HL_48376.4* | ||
| 1/BA/2471:2479 | homologous HL_7RQB_060 | NA HL_36421.5* | ||
| 1/BA/2528:2535 | homologous HL_7RQB_061 | NA HL_92681.5* | ||
| 1/BA/2551:2557 | geometric HL_4WF9_058 | NA HL_26055.6* | ||
| 1/BA/2594:2599 | homologous HL_7RQB_063 | NA HL_43074.18* | ||
| 1/BA/2658:2663 | homologous HL_7RQB_064 | NA HL_43074.18* | ||
| 1/BA/2701:2706 | homologous HL_7RQB_065 | NA HL_31583.1* | ||
| 1/BA/2745:2759 | homologous HL_7RQB_066 | NA HL_56677.5* | ||
| 1/BA/2794:2802 | Other HL geometric HL_1P6V_001 | NA HL_79299.11* | ||
| 1/BA/2819:2827 | homologous HL_7RQB_068 | NA HL_05018.6* | ||
| 1/BA/2856:2861 | homologous HL_7RQB_069 | NA HL_43074.18* | ||
| 1/BB/38:44 | geometric HL_7RQB_070 | NA HL_02733.5* | ||
| 1/BB/86:90 | GNRA homologous HL_5TBW_186 | NA HL_43074.18* | ||
| 1/CA/12:22 | NA | NA | ||
| 1/CA/68J:68P | NA | NA | ||
| 1/CA/158:163 | NA | NA | ||
| 1/CA/186F:186K | NA | NA | ||
| 1/CA/201:216 | NA | NA | ||
| 1/CA/259:267 | NA | NA | ||
| 1/CA/296:301 | NA | NA | ||
| 1/CA/320:333 | NA | NA | ||
| 1/CA/342:347 | NA | NA | ||
| 1/CA/379:384 | NA | NA | ||
| 1/CA/419:424 | NA | NA | ||
| 1/CA/458:474 | NA | NA | ||
| 1/CA/522:527 | NA | NA | ||
| 1/CA/617:623 | NA | NA | ||
| 1/CA/689:698 | NA | NA | ||
| 1/CA/726:731 | NA | NA | ||
| 1/CA/786:796 | NA | NA | ||
| 1/CA/838:848 | NA | NA | ||
| 1/CA/862:867 | NA | NA | ||
| 1/CA/897:902 | NA | NA | ||
| 1/CA/963:972 | NA | NA | ||
| 1/CA/1012:1017 | NA | NA | ||
| 1/CA/1028B:1028G | NA | NA | ||
| 1/CA/1076:1081 | NA | NA | ||
| 1/CA/1089:1096 | NA | NA | ||
| 1/CA/1134:1140 | NA | NA | ||
| 1/CA/1165:1171 | NA | NA | ||
| 1/CA/1265:1270 | NA | NA | ||
| 1/CA/1314:1323 | NA | NA | ||
| 1/CA/1356:1366 | NA | NA | ||
| 1/CA/1440G:1440L | NA | NA | ||
| 1/CA/1515:1520 | NA | NA | ||
| 1/CW/12:23 | NA | NA | ||
| 1/CW/31:39 | NA | NA | ||
| 1/CW/53:61 | NA | NA | ||
| 1/DA/59:68 | homologous HL_7RQB_001 | NA HL_29414.1* | ||
| 1/DA/87:95 | homologous HL_7RQB_002 | NA HL_17926.5* | ||
| 1/DA/123:128 | homologous HL_7RQB_003 | NA HL_62869.3* | ||
| 1/DA/137B:141B | homologous HL_7RQB_004 | NA HL_86069.1* | ||
| 1/DA/155:171 | Other HL geometric HL_1P6V_001 | NA HL_79299.11* | ||
| 1/DA/194:201 | homologous HL_7RQB_006 | NA HL_23481.5* | ||
| 1/DA/225:230 | homologous HL_7RQB_007 | NA HL_06569.2* | ||
| 1/DA/246:252 | homologous HL_7RQB_008 | NA HL_67216.5* | ||
| 1/DA/270K:270Q | geometric HL_5WTI_001 | NA HL_33612.1* | ||
| 1/DA/305:312 | homologous HL_7RQB_010 | NA HL_68493.6* | ||
| 1/DA/319:323 | homologous HL_7RQB_011 | NA HL_98557.5* | ||
| 1/DA/327:335 | homologous HL_7RQB_012 | NA HL_08002.6* | ||
| 1/DA/383:391 | NA | NA | ||
| 1/DA/410:417 | homologous HL_7RQB_014 | NA HL_32512.8* | ||
| 1/DA/462:467 | homologous HL_7RQB_015 | NA HL_43074.18* | ||
| 1/DA/487:493 | homologous HL_7RQB_016 | NA HL_43074.18* | ||
| 1/DA/544:549 | GNRA geometric HL_6JDV_001 | NA HL_43074.18* | ||
| 1/DA/566:575 | T-loop with 2 stacked bulged bases geometric HL_4WF9_018 | NA HL_33239.17* | ||
| 1/DA/611:617 | homologous HL_7RQB_019 | NA HL_49196.4* | ||
| 1/DA/629:634 | homologous HL_7RQB_020 | NA HL_43074.18* | ||
| 1/DA/641:647 | NA | NA | ||
| 1/DA/712:719 | homologous HL_7RQB_022 | NA HL_93727.5* | ||
| 1/DA/744:753 | NA | NA | ||
| 1/DA/779:785 | geometric HL_361D_002 | NA HL_18218.2* | ||
| 1/DA/826:831 | homologous HL_7RQB_025 | NA HL_15942.5* | ||
| 1/DA/884:892 | geometric HL_361D_002 | NA HL_18218.2* | ||
| 1/DA/955:962 | homologous HL_7RQB_027 | NA HL_43074.18* | ||
| 1/DA/978:985 | homologous HL_7RQB_028 | NA HL_72451.5* | ||
| 1/DA/1171:1178 | geometric HL_361D_002 | NA HL_18218.2* | ||
| 1/DA/1222:1227 | GNRA geometric HL_2Z75_004 | NA HL_43074.18* | ||
| 1/DA/1281:1289 | homologous HL_7RQB_033 | NA HL_33239.17* | ||
| 1/DA/1324:1330 | homologous HL_7RQB_034 | NA HL_86880.5* | ||
| 1/DA/1363:1368 | homologous HL_7RQB_035 | NA HL_43074.18* | ||
| 1/DA/1389:1398 | homologous HL_7RQB_036 | NA HL_78457.4* | ||
| 1/DA/1450:1461 | NA | NA | ||
| 1/DA/1492:1498 | NA | NA | ||
| 1/DA/1533:1538 | Other HL geometric HL_2CZJ_007 | NA HL_79299.11* | ||
| 1/DA/1565:1568 | homologous HL_7RQB_039 | NA HL_69353.7* | ||
| 1/DA/1612:1619 | homologous HL_7RQB_040 | NA HL_66171.3* | ||
| 1/DA/1630:1636 | NA | NA | ||
| 1/DA/1691:1696 | geometric HL_7RQB_042 | NA HL_79299.11* | ||
| 1/DA/1727:1733 | homologous HL_7RQB_043 | NA HL_49638.1* | ||
| 1/DA/1752:1756 | homologous HL_7RQB_044 | NA HL_79272.3* | ||
| 1/DA/1777:1787 | homologous HL_7RQB_045 | NA HL_43613.4* | ||
| 1/DA/1806:1811 | homologous HL_7RQB_046 | NA HL_43074.18* | ||
| 1/DA/1864:1878 | homologous HL_7RQB_047 | NA HL_43074.18* | ||
| 1/DA/1910:1920 | geometric HL_5TBW_049 | NA HL_98248.1* | ||
| 1/DA/1949:1957 | homologous HL_7RQB_049 | NA HL_53760.4* | ||
| 1/DA/2027:2036 | homologous HL_7RQB_050 | NA HL_90642.5* | ||
| 1/DA/2209:2215 | geometric HL_6U8D_003 | NA HL_18722.3* | ||
| 1/DA/2248:2256 | homologous HL_7RQB_053 | NA | ||
| 1/DA/2264:2276 | geometric HL_7A0S_053 | NA HL_19870.5* | ||
| 1/DA/2303:2313 | homologous HL_7RQB_055 | NA HL_11805.3* | ||
| 1/DA/2324:2331 | homologous HL_7RQB_056 | NA HL_46142.8* | ||
| 1/DA/2355:2362 | homologous HL_7RQB_057 | NA HL_93727.5* | ||
| 1/DA/2374:2379 | homologous HL_7RQB_058 | NA HL_43074.18* | ||
| 1/DA/2404:2413 | homologous HL_7RQB_059 | NA HL_48376.4* | ||
| 1/DA/2471:2479 | homologous HL_7RQB_060 | NA HL_36421.5* | ||
| 1/DA/2528:2535 | homologous HL_7RQB_061 | NA HL_92681.5* | ||
| 1/DA/2551:2557 | geometric HL_5TBW_063 | NA HL_26055.6* | ||
| 1/DA/2594:2599 | homologous HL_7RQB_063 | NA HL_43074.18* | ||
| 1/DA/2658:2663 | homologous HL_7RQB_064 | NA HL_43074.18* | ||
| 1/DA/2701:2706 | homologous HL_7RQB_065 | NA HL_31583.1* | ||
| 1/DA/2745:2759 | homologous HL_7RQB_066 | NA HL_56677.5* | ||
| 1/DA/2794:2802 | Other HL geometric HL_1P6V_001 | NA HL_79299.11* | ||
| 1/DA/2819:2827 | homologous HL_7RQB_068 | NA HL_05018.6* | ||
| 1/DA/2856:2861 | homologous HL_7RQB_069 | NA HL_43074.18* | ||
| 1/DB/38:44 | geometric HL_5J7L_203 | NA HL_02733.5* | ||
| 1/DB/86:90 | GNRA homologous HL_5TBW_186 | NA HL_43074.18* |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V9M_064 | geometric HL_1MMS_001 | ||
| HL_4V9M_065 | homologous HL_7RQB_030 | ||
| HL_4V9M_087 | homologous HL_7RQB_051 | ||
| HL_4V9M_171 | geometric HL_5J7L_161 | ||
| HL_4V9M_172 | homologous HL_7RQB_030 | ||
| HL_4V9M_194 | homologous HL_7RQB_051 |
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/AA/30:32, 1/AA/552:553 | NA | NA | ||
| 1/AA/44:45, 1/AA/396:398 | NA | NA | ||
| 1/AA/47:52, 1/AA/359:361 | NA | NA | ||
| 1/AA/54:56, 1/AA/356:357 | NA | NA | ||
| 1/AA/63:66, 1/AA/103:104 | NA | NA | ||
| 1/AA/67:68A, 1/AA/68Y:102 | NA | NA | ||
| 1/AA/68D:68F, 1/AA/68T:68V | NA | NA | ||
| 1/AA/129:131, 1/AA/231:232 | NA | NA | ||
| 1/AA/132:136, 1/AA/227:230 | NA | NA | ||
| 1/AA/148:153, 1/AA/168:174 | NA | NA | ||
| 1/AA/186:186B, 1/AA/186O:191 | NA | NA | ||
| 1/AA/242:247, 1/AA/277:284 | NA | NA | ||
| 1/AA/249:252, 1/AA/274:275 | NA | NA | ||
| 1/AA/367:369, 1/AA/392:393 | NA | NA | ||
| 1/AA/371:375, 1/AA/389:390 | NA | NA | ||
| 1/AA/375:376, 1/AA/387:389 | NA | NA | ||
| 1/AA/409:416, 1/AA/427:433 | NA | NA | ||
| 1/AA/446:450, 1/AA/483:488 | NA | NA | ||
| 1/AA/450:455, 1/AA/477:483 | NA | NA | ||
| 1/AA/504:511, 1/AA/540:541 | NA | NA | ||
| 1/AA/515:521, 1/AA/528:536 | NA | NA | ||
| 1/AA/569:575, 1/AA/880:881 | NA | NA | ||
| 1/AA/580:584, 1/AA/757:761 | NA | NA | ||
| 1/AA/594:596, 1/AA/644:645 | NA | NA | ||
| 1/AA/597:598, 1/AA/640:643 | NA | NA | ||
| 1/AA/605:612, 1/AA/628:633 | NA | NA | ||
| 1/AA/654:655, 1/AA/751:754 | NA | NA | ||
| 1/AA/657:658, 1/AA/747:749 | NA | NA | ||
| 1/AA/662:666, 1/AA/740:743 | NA | NA | ||
| 1/AA/673:678, 1/AA/712:717 | NA | NA | ||
| 1/AA/683:688, 1/AA/699:707 | NA | NA | ||
| 1/AA/774:778, 1/AA/804:805 | NA | NA | ||
| 1/AA/779:783, 1/AA/799:803 | NA | NA | ||
| 1/AA/887:894, 1/AA/905:910 | NA | NA | ||
| 1/AA/922:923, 1/AA/1393:1395 | NA | NA | ||
| 1/AA/925:927, 1/AA/1390:1391 | NA | NA | ||
| 1/AA/933:935, 1/AA/1380:1384 | NA | NA | ||
| 1/AA/953:954, 1/AA/1226:1228 | NA | NA | ||
| 1/AA/993:997, 1/AA/1044:1045 | NA | NA | ||
| 1/AA/1048:1050, 1/AA/1208:1209 | NA | NA | ||
| 1/AA/1052:1056, 1/AA/1204:1206 | NA | NA | ||
| 1/AA/1057:1058, 1/AA/1199:1203 | NA | NA | ||
| 1/AA/1060:1061, 1/AA/1195:1197 | NA | NA | ||
| 1/AA/1061:1063, 1/AA/1193:1195 | NA | NA | ||
| 1/AA/1124:1127, 1/AA/1145:1149 | NA | NA | ||
| 1/AA/1127:1128, 1/AA/1143:1145 | NA | NA | ||
| 1/AA/1128:1132, 1/AA/1142:1143 | NA | NA | ||
| 1/AA/1158:1161, 1/AA/1175:1181 | NA | NA | ||
| 1/AA/1246:1253, 1/AA/1284:1291 | NA | NA | ||
| 1/AA/1255:1258, 1/AA/1277:1282 | NA | NA | ||
| 1/AA/1259:1260, 1/AA/1274:1276 | NA | NA | ||
| 1/AA/1260:1262, 1/AA/1273:1274 | NA | NA | ||
| 1/AA/1303:1308, 1/AA/1329:1334 | NA | NA | ||
| 1/AA/1399:1401, 1/AA/1501:1504 | NA | NA | ||
| 1/AA/1401:1404, 1/AA/1497:1501 | NA | NA | ||
| 1/AA/1405:1407, 1/AA/1494:1496 | NA | NA | ||
| 1/AA/1407:1410, 1/AA/1490:1494 | NA | NA | ||
| 1/AA/1412:1414, 1/AA/1486:1488 | NA | NA | ||
| 1/AA/1416:1419, 1/AA/1481:1484 | NA | NA | ||
| 1/AA/1431:1435, 1/AA/1466:1469 | NA | NA | ||
| 1/AA/1435:1437, 1/AA/1464:1466 | NA | NA | ||
| 1/AA/1440:1440E, 1/AA/1440N:1461 | NA | NA | ||
| 1/AW/50:52, 1/AW/62:64 | NA | NA | ||
| 1/BA/24:30, 1/BA/510:516 | Triple sheared with non-canonical cWW homologous IL_7RQB_001 | NA IL_66414.5* | ||
| 1/BA/36:37, 1/BA/442:444 | Single bulged A homologous IL_7RQB_002 | NA IL_80007.16* | ||
| 1/BA/43:44, 1/BA/434:436 | Minor groove platform homologous IL_7RQB_003 | NA IL_06437.11* | ||
| 1/BA/55:56, 1/BA/114:115 | NA | NA | ||
| 1/BA/81:85, 1/BA/97:105 | Kink-turn homologous IL_7RQB_004 | NA IL_29549.9* | ||
| 1/BA/122:123, 1/BA/128:129 | NA | NA | ||
| 1/BA/134:135, 1/BA/144:145 | NA | NA | ||
| 1/BA/154:155, 1/BA/171:172 | homologous HL_7RQB_005 | NA | ||
| 1/BA/183:184, 1/BA/212:214 | Single stack bend homologous IL_7RQB_005 | NA IL_04038.4* | ||
| 1/BA/188:194, 1/BA/201:208 | 8x7 Sarcin-Ricin; G-bulge homologous IL_7RQB_006 | NA IL_04346.5* | ||
| 1/BA/239:245, 1/BA/253:258 | 7x6 Sarcin-Ricin; G-bulge homologous IL_7RQB_007 | NA IL_35110.5* | ||
| 1/BA/273A:273B, 1/BA/363F:364 | Major groove platform homologous IL_7RQB_009 | NA IL_13730.12* | ||
| 1/BA/273G:278, 1/BA/362:363A | NA | NA | ||
| 1/BA/280:284, 1/BA/357:360 | tSH-tHW homologous IL_7RQB_011 | NA IL_08757.3* | ||
| 1/BA/288:290, 1/BA/350:353 | Isolated tHS basepair with bulges homologous IL_7RQB_012 | NA IL_38958.6* | ||
| 1/BA/293:295, 1/BA/343:347 | homologous IL_7RQB_013 | NA IL_69440.1* | ||
| 1/BA/481:484, 1/BA/496:509 | homologous IL_7RQB_014 | NA IL_60992.5* | ||
| 1/BA/564:566, 1/BA/575:577 | homologous IL_7RQB_015 | NA IL_01312.13* | ||
| 1/BA/606:609B, 1/BA/618B:622 | AAA cross-strand stack homologous IL_7RQB_016 | NA IL_56467.6* | ||
| 1/BA/672:674, 1/BA/806:808 | homologous IL_7RQB_017 | NA IL_01312.13* | ||
| 1/BA/674:678, 1/BA/799:806 | tHW-tHW cross-strand stack geometric IL_4WF9_021 | NA IL_17470.5* | ||
| 1/BA/697:698, 1/BA/763:765 | Single bulged A homologous IL_7RQB_019 | NA IL_80007.16* | ||
| 1/BA/702:703, 1/BA/728:730 | Single bulged G homologous IL_7RQB_020 | NA IL_59137.10* | ||
| 1/BA/703:707, 1/BA/724:728 | Triple sheared geometric IL_7RQB_021 | NA IL_56467.6* | ||
| 1/BA/738:741, 1/BA/756:758 | Major groove platform with extra cWW homologous IL_7RQB_022 | NA IL_95485.6* | ||
| 1/BA/775:777, 1/BA/787:791 | Multiple bulged bases homologous IL_7RQB_023 | NA IL_90991.5* | ||
| 1/BA/837:838, 1/BA/940:942 | Single stack bend homologous IL_7RQB_024 | NA IL_04038.4* | ||
| 1/BA/844:846, 1/BA/931:934 | Intercalated cWW homologous IL_7RQB_025 | NA IL_01312.13* | ||
| 1/BA/846:850, 1/BA/928:931 | geometric IL_7RQB_026 | NA IL_94165.1* | ||
| 1/BA/858:862, 1/BA/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge geometric IL_7RQB_027 | NA IL_83354.1* | ||
| 1/BA/862:863, 1/BA/913:915 | Minor groove platform homologous IL_7RQB_028 | NA IL_06437.11* | ||
| 1/BA/864:868, 1/BA/909:912 | C-loop homologous IL_7RQB_029 | NA IL_63596.4* | ||
| 1/BA/875:877, 1/BA/899:902 | Minor groove platform with extra cWW homologous IL_7RQB_031 | NA IL_87332.1* | ||
| 1/BA/877:879, 1/BA/898:899 | Single stack bend geometric IL_7RQB_058 | NA IL_31836.1* | ||
| 1/BA/880:881, 1/BA/895:897 | Single bulged A homologous IL_7RQB_033 | NA IL_80007.16* | ||
| 1/BA/952:954, 1/BA/963:965 | homologous IL_7RQB_034 | NA IL_01312.13* | ||
| 1/BA/994:996, 1/BA/1159:1160 | Single bulged C homologous IL_7RQB_035 | NA IL_61258.10* | ||
| 1/BA/998:1002, 1/BA/1153:1157 | UAA/GAN homologous IL_7RQB_036 | NA IL_53523.5* | ||
| 1/BA/1004:1011, 1/BA/1150:1151 | SSU/LSU pseudoknot homologous IL_7RQB_037 | NA IL_15861.6* | ||
| 1/BA/1011:1013, 1/BA/1149:1150 | Single bulged U geometric IL_5TBW_050 | NA IL_83039.11* | ||
| 1/BA/1018:1024, 1/BA/1140:1144 | NA | NA | ||
| 1/BA/1024:1030, 1/BA/1124:1140 | geometric IL_7RQB_040 | NA IL_55786.1* | ||
| 1/BA/1031:1034, 1/BA/1121:1123 | Isolated non-canonical cWW with bulges homologous IL_7RQB_041 | NA IL_55456.1* | ||
| 1/BA/1043:1051, 1/BA/1108:1112 | Kink-turn homologous IL_7RQB_042 | NA IL_90538.3* | ||
| 1/BA/1196:1198, 1/BA/1247:1250 | Isolated cWS basepair homologous IL_7RQB_045 | NA IL_67621.5* | ||
| 1/BA/1202:1206, 1/BA/1240:1243 | homologous IL_7RQB_046 | NA IL_68574.2* | ||
| 1/BA/1208:1215, 1/BA/1234:1238 | Kink-turn homologous IL_7RQB_047 | NA IL_29549.9* | ||
| 1/BA/1219:1221, 1/BA/1229:1230 | Single bulged A homologous IL_7RQB_048 | NA IL_80007.16* | ||
| 1/BA/1221:1222, 1/BA/1227:1229 | Not an internal loop geometric IL_5VCI_005 | NA IL_04038.4* | ||
| 1/BA/1262:1269, 1/BA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge homologous IL_7RQB_049 | NA IL_04346.5* | ||
| 1/BA/1310:1313, 1/BA/1603:1604 | Major groove platform; stack outside cWW homologous IL_7RQB_050 | NA IL_70995.6* | ||
| 1/BA/1319:1323, 1/BA/1331:1333 | C-loop homologous IL_7RQB_051 | NA IL_63596.4* | ||
| 1/BA/1351:1355, 1/BA/1376:1380 | UAA/GAN homologous IL_7RQB_052 | NA IL_53523.5* | ||
| 1/BA/1357:1361, 1/BA/1370:1374 | tSH-tHW-tHS homologous IL_7RQB_053 | NA IL_39521.5* | ||
| 1/BA/1415:1416, 1/BA/1582:1587 | homologous IL_7RQB_054 | NA IL_67474.3* | ||
| 1/BA/1417:1421, 1/BA/1577:1581 | UAA/GAN homologous IL_7RQB_055 | NA IL_53523.5* | ||
| 1/BA/1433:1435, 1/BA/1557:1560 | Isolated tWW turn homologous IL_7RQB_056 | NA IL_54997.5* | ||
| 1/BA/1437:1440, 1/BA/1551:1555 | tSH-tHW homologous IL_7RQB_057 | NA IL_08757.3* | ||
| 1/BA/1469:1473, 1/BA/1520:1523 | UAA/GAN homologous IL_7RQB_060 | NA IL_53523.5* | ||
| 1/BA/1481:1483, 1/BA/1506:1512 | homologous IL_7RQB_061 | NA IL_46464.1* | ||
| 1/BA/1489:1491, 1/BA/1499:1500 | Single bulged A homologous IL_7RQB_062 | NA IL_40508.4* | ||
| 1/BA/1651:1656, 1/BA/2004:2006 | homologous IL_7RQB_064 | NA IL_12566.2* | ||
| 1/BA/1663:1665, 1/BA/1995:1997 | Isolated tWW turn homologous IL_7RQB_065 | NA IL_54997.5* | ||
| 1/BA/1666:1669, 1/BA/1993:1994 | Major groove platform; stack outside cWW geometric IL_7RQB_066 | NA IL_80663.10* | ||
| 1/BA/1669:1674, 1/BA/1990:1993 | Intercalated tWH homologous IL_7RQB_067 | NA IL_01312.13* | ||
| 1/BA/1686:1691, 1/BA/1696:1702 | tSH-tSH-tHH-tHS homologous IL_7RQB_068 | NA IL_66584.5* | ||
| 1/BA/1770:1771, 1/BA/1980:1982 | Single bulged A homologous IL_7RQB_069 | NA IL_80007.16* | ||
| 1/BA/1798:1804, 1/BA/1813:1821 | Kink-turn related homologous IL_7RQB_070 | NA IL_17069.3* | ||
| 1/BA/1837:1840, 1/BA/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket homologous IL_7RQB_071 | NA IL_31836.1* | ||
| 1/BA/1841:1843, 1/BA/1897:1901 | Isolated non-canonical cWW with bulges geometric IL_4V9F_097 | NA IL_01312.13* | ||
| 1/BA/1846:1849, 1/BA/1893:1894 | Minor groove platform homologous IL_7RQB_073 | NA IL_06437.11* | ||
| 1/BA/1851:1855, 1/BA/1887:1891 | UAA/GAN with extra pair homologous IL_7RQB_074 | NA IL_34907.2* | ||
| 1/BA/1856:1860, 1/BA/1882:1886 | Triple sheared homologous IL_7RQB_075 | NA IL_56467.6* | ||
| 1/BA/1933:1934, 1/BA/1964:1967 | Multiple bulged bases homologous IL_7RQB_076 | NA IL_69632.1* | ||
| 1/BA/1934:1945, 1/BA/1961:1964 | geometric IL_4WF9_077 | NA IL_70285.1* | ||
| 1/BA/2050:2052, 1/BA/2617:2618 | Major groove platform homologous IL_7RQB_078 | NA IL_80663.10* | ||
| 1/BA/2054:2057, 1/BA/2611:2615 | homologous IL_7RQB_079 | NA IL_01206.1* | ||
| 1/BA/2067:2069, 1/BA/2442:2443 | Single bulged U homologous IL_7RQB_080 | NA IL_83039.11* | ||
| 1/BA/2070:2071, 1/BA/2438:2441 | Minor groove platform homologous IL_7RQB_081 | NA IL_06437.11* | ||
| 1/BA/2081:2083, 1/BA/2236:2239 | Isolated tHS basepair with bulges homologous IL_7RQB_082 | NA IL_38958.6* | ||
| 1/BA/2085:2087, 1/BA/2232:2234 | homologous IL_7RQB_083 | NA IL_01312.13* | ||
| 1/BA/2297:2299, 1/BA/2317:2321 | Isolated tHS basepair with bulges homologous IL_7RQB_088 | NA IL_38958.6* | ||
| 1/BA/2350:2353, 1/BA/2364:2367 | Double sheared homologous IL_7RQB_089 | NA IL_09705.7* | ||
| 1/BA/2401:2403, 1/BA/2414:2415 | NA | NA | ||
| 1/BA/2453:2454, 1/BA/2498:2500 | Single stack bend homologous IL_7RQB_091 | NA IL_04038.4* | ||
| 1/BA/2454:2455, 1/BA/2496:2498 | Major groove platform geometric IL_1S03_004 | NA IL_80663.10* | ||
| 1/BA/2457:2461, 1/BA/2489:2494 | NA | NA | ||
| 1/BA/2466:2470, 1/BA/2480:2484 | Triple sheared homologous IL_7RQB_095 | NA IL_56467.6* | ||
| 1/BA/2507:2508, 1/BA/2580:2582 | Major groove platform homologous IL_7RQB_096 | NA IL_02060.4* | ||
| 1/BA/2510:2512, 1/BA/2574:2578 | Isolated non-canonical cWW with bulges geometric IL_7RQB_097 | NA IL_01312.13* | ||
| 1/BA/2512:2513, 1/BA/2571:2574 | Multiple bulged bases homologous IL_7RQB_098 | NA IL_13730.12* | ||
| 1/BA/2522:2523, 1/BA/2540:2543 | Minor groove platform with intercalation homologous IL_7RQB_099 | NA IL_95601.1* | ||
| 1/BA/2591:2592, 1/BA/2601:2603 | Single bulged A homologous IL_7RQB_101 | NA IL_80007.16* | ||
| 1/BA/2636:2640, 1/BA/2774:2782 | tSH-tHS-tHW homologous IL_7RQB_102 | NA IL_34907.2* | ||
| 1/BA/2652:2658, 1/BA/2663:2668 | Sarcin-Ricin target |