4W2I Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/AA/12:22 | NA | NA | ||
| 1/AA/189C:189H | NA | NA | ||
| 1/AA/201:216 | NA | NA | ||
| 1/AA/259:267 | NA | NA | ||
| 1/AA/296:301 | NA | NA | ||
| 1/AA/320:333 | NA | NA | ||
| 1/AA/379:384 | NA | NA | ||
| 1/AA/419:424 | NA | NA | ||
| 1/AA/458:473 | NA | NA | ||
| 1/AA/522:527 | NA | NA | ||
| 1/AA/617:623 | NA | NA | ||
| 1/AA/689:698 | NA | NA | ||
| 1/AA/726:731 | NA | NA | ||
| 1/AA/786:796 | NA | NA | ||
| 1/AA/838:848 | NA | NA | ||
| 1/AA/862:867 | NA | NA | ||
| 1/AA/897:902 | NA | NA | ||
| 1/AA/963:972 | NA | NA | ||
| 1/AA/1012:1017 | NA | NA | ||
| 1/AA/1029:1032 | NA | NA | ||
| 1/AA/1076:1081 | NA | NA | ||
| 1/AA/1089:1096 | NA | NA | ||
| 1/AA/1134:1140 | NA | NA | ||
| 1/AA/1165:1171 | NA | NA | ||
| 1/AA/1265:1270 | NA | NA | ||
| 1/AA/1314:1323 | NA | NA | ||
| 1/AA/1356:1366 | NA | NA | ||
| 1/AA/1445:1457 | NA | NA | ||
| 1/AA/1515:1520 | NA | NA | ||
| 1/AW/30:40 | NA | NA | ||
| 1/AW/53:61 | NA | NA | ||
| 1/AX/13:22 | NA | NA | ||
| 1/AX/31:39 | NA | NA | ||
| 1/AX/53:61 | NA | NA | ||
| 1/BA/58:67 | homologous HL_7RQB_001 | NA HL_29414.1* | ||
| 1/BA/86:94 | homologous HL_7RQB_002 | NA HL_17926.5* | ||
| 1/BA/121:126 | homologous HL_7RQB_003 | NA HL_62869.3* | ||
| 1/BA/136:141 | homologous HL_7RQB_004 | NA HL_86069.1* | ||
| 1/BA/183:190 | homologous HL_7RQB_006 | NA HL_23481.5* | ||
| 1/BA/214:219 | homologous HL_7RQB_007 | NA HL_06569.2* | ||
| 1/BA/235:241 | homologous HL_7RQB_008 | NA HL_67216.5* | ||
| 1/BA/269:275 | geometric HL_5J7L_018 | NA HL_93229.1* | ||
| 1/BA/329:336 | homologous HL_7RQB_010 | NA HL_68493.6* | ||
| 1/BA/343:347 | homologous HL_7RQB_011 | NA HL_98557.5* | ||
| 1/BA/351:359 | homologous HL_7RQB_012 | NA HL_08002.6* | ||
| 1/BA/409:419 | homologous HL_7RQB_013 | NA HL_91503.3* | ||
| 1/BA/437:444 | homologous HL_7RQB_014 | NA HL_32512.8* | ||
| 1/BA/488:493 | homologous HL_7RQB_015 | NA HL_43074.18* | ||
| 1/BA/513:518 | homologous HL_7RQB_016 | NA HL_43074.18* | ||
| 1/BA/589:598 | geometric HL_7RQB_018 | NA HL_33239.17* | ||
| 1/BA/635:641 | homologous HL_7RQB_019 | NA HL_49196.4* | ||
| 1/BA/654:659 | homologous HL_7RQB_020 | NA HL_43074.18* | ||
| 1/BA/666:672 | homologous HL_7RQB_021 | NA HL_02361.6* | ||
| 1/BA/759:766 | homologous HL_7RQB_022 | NA HL_93727.5* | ||
| 1/BA/791:800 | homologous HL_7RQB_023 | NA HL_39334.5* | ||
| 1/BA/826:832 | homologous HL_7RQB_024 | NA HL_16898.3* | ||
| 1/BA/873:878 | homologous HL_7RQB_025 | NA HL_15942.5* | ||
| 1/BA/1268:1273 | homologous HL_7RQB_032 | NA HL_43074.18* | ||
| 1/BA/1327:1335 | homologous HL_7RQB_033 | NA HL_33239.17* | ||
| 1/BA/1409:1414 | homologous HL_7RQB_035 | NA HL_43074.18* | ||
| 1/BA/1435:1444 | homologous HL_7RQB_036 | NA HL_78457.4* | ||
| 1/BA/1499:1506 | homologous HL_7RQB_037 | NA HL_71540.1* | ||
| 1/BA/1538:1544 | homologous HL_7RQB_038 | NA HL_86880.5* | ||
| 1/BA/1612:1615 | homologous HL_7RQB_039 | NA HL_69353.7* | ||
| 1/BA/1658:1665 | homologous HL_7RQB_040 | NA HL_66171.3* | ||
| 1/BA/1677:1682 | homologous HL_7RQB_041 | NA HL_86880.5* | ||
| 1/BA/1738:1743 | geometric HL_7RQB_042 | NA HL_79299.11* | ||
| 1/BA/1765:1771 | homologous HL_7RQB_043 | NA HL_49638.1* | ||
| 1/BA/1783:1787 | homologous HL_7RQB_044 | NA HL_79272.3* | ||
| 1/BA/1808:1818 | homologous HL_7RQB_045 | NA HL_43613.4* | ||
| 1/BA/1837:1842 | homologous HL_7RQB_046 | NA HL_43074.18* | ||
| 1/BA/1895:1900 | homologous HL_7RQB_047 | NA HL_43074.18* | ||
| 1/BA/1932:1942 | geometric HL_5TBW_049 | NA HL_98248.1* | ||
| 1/BA/1971:1979 | homologous HL_7RQB_049 | NA HL_53760.4* | ||
| 1/BA/2226:2231 | homologous HL_7RQB_052 | NA HL_82131.1* | ||
| 1/BA/2260:2268 | homologous HL_7RQB_053 | NA | ||
| 1/BA/2276:2288 | homologous HL_7RQB_054 | NA HL_19870.5* | ||
| 1/BA/2315:2325 | homologous HL_7RQB_055 | NA HL_11805.3* | ||
| 1/BA/2336:2343 | homologous HL_7RQB_056 | NA HL_46142.8* | ||
| 1/BA/2367:2374 | homologous HL_7RQB_057 | NA HL_93727.5* | ||
| 1/BA/2386:2391 | homologous HL_7RQB_058 | NA HL_43074.18* | ||
| 1/BA/2416:2425 | homologous HL_7RQB_059 | NA HL_48376.4* | ||
| 1/BA/2483:2491 | homologous HL_7RQB_060 | NA HL_36421.5* | ||
| 1/BA/2540:2547 | homologous HL_7RQB_061 | NA HL_92681.5* | ||
| 1/BA/2563:2569 | geometric HL_4WF9_058 | NA HL_26055.6* | ||
| 1/BA/2606:2611 | homologous HL_7RQB_063 | NA HL_43074.18* | ||
| 1/BA/2670:2675 | GNRA geometric HL_4V9F_066 | NA HL_43074.18* | ||
| 1/BA/2713:2718 | homologous HL_7RQB_065 | NA HL_31583.1* | ||
| 1/BA/2758:2772 | homologous HL_7RQB_066 | NA HL_56677.5* | ||
| 1/BA/2829:2837 | homologous HL_7RQB_068 | NA HL_05018.6* | ||
| 1/BA/2866:2871 | homologous HL_7RQB_069 | NA HL_43074.18* | ||
| 1/BB/38:44 | geometric HL_7RQB_070 | NA HL_02733.5* | ||
| 1/BB/86:91 | GNRA homologous HL_5TBW_186 | NA HL_43074.18* | ||
| 1/CA/12:22 | NA | NA | ||
| 1/CA/158:163 | NA | NA | ||
| 1/CA/189C:189H | NA | NA | ||
| 1/CA/201:216 | NA | NA | ||
| 1/CA/259:267 | NA | NA | ||
| 1/CA/296:301 | NA | NA | ||
| 1/CA/320:333 | NA | NA | ||
| 1/CA/342:347 | NA | NA | ||
| 1/CA/379:384 | NA | NA | ||
| 1/CA/419:424 | NA | NA | ||
| 1/CA/458:473 | NA | NA | ||
| 1/CA/522:527 | NA | NA | ||
| 1/CA/617:623 | NA | NA | ||
| 1/CA/689:698 | NA | NA | ||
| 1/CA/726:731 | NA | NA | ||
| 1/CA/786:796 | NA | NA | ||
| 1/CA/838:848 | NA | NA | ||
| 1/CA/862:867 | NA | NA | ||
| 1/CA/963:972 | NA | NA | ||
| 1/CA/1012:1017 | NA | NA | ||
| 1/CA/1030:1031 | NA | NA | ||
| 1/CA/1076:1081 | NA | NA | ||
| 1/CA/1089:1096 | NA | NA | ||
| 1/CA/1134:1140 | NA | NA | ||
| 1/CA/1165:1171 | NA | NA | ||
| 1/CA/1265:1270 | NA | NA | ||
| 1/CA/1314:1323 | NA | NA | ||
| 1/CA/1356:1366 | NA | NA | ||
| 1/CA/1445:1457 | NA | NA | ||
| 1/CA/1515:1520 | NA | NA | ||
| 1/CW/30:40 | NA | NA | ||
| 1/CW/53:61 | NA | NA | ||
| 1/CX/13:22 | NA | NA | ||
| 1/CX/31:39 | NA | NA | ||
| 1/CX/53:61 | NA | NA | ||
| 1/DA/59:68 | homologous HL_7RQB_001 | NA HL_29414.1* | ||
| 1/DA/87:95 | homologous HL_7RQB_002 | NA HL_17926.5* | ||
| 1/DA/123:128 | homologous HL_7RQB_003 | NA HL_62869.3* | ||
| 1/DA/139:142A | homologous HL_7RQB_004 | NA HL_86069.1* | ||
| 1/DA/194:201 | geometric HL_7RQB_006 | NA HL_23481.5* | ||
| 1/DA/225:230 | homologous HL_7RQB_007 | NA HL_06569.2* | ||
| 1/DA/246:252 | homologous HL_7RQB_008 | NA HL_67216.5* | ||
| 1/DA/271I:271O | geometric HL_5J7L_018 | NA HL_93229.1* | ||
| 1/DA/305:312 | homologous HL_7RQB_010 | NA HL_68493.6* | ||
| 1/DA/319:323 | homologous HL_7RQB_011 | NA HL_98557.5* | ||
| 1/DA/327:335 | homologous HL_7RQB_012 | NA HL_08002.6* | ||
| 1/DA/382:392 | homologous HL_7RQB_013 | NA HL_91503.3* | ||
| 1/DA/410:417 | homologous HL_7RQB_014 | NA HL_32512.8* | ||
| 1/DA/462:467 | homologous HL_7RQB_015 | NA HL_43074.18* | ||
| 1/DA/487:493 | homologous HL_7RQB_016 | NA HL_43074.18* | ||
| 1/DA/566:575 | geometric HL_7RQB_018 | NA HL_33239.17* | ||
| 1/DA/612:615 | homologous HL_7RQB_019 | NA HL_49196.4* | ||
| 1/DA/629:634 | homologous HL_7RQB_020 | NA HL_43074.18* | ||
| 1/DA/641:647 | homologous HL_7RQB_021 | NA HL_02361.6* | ||
| 1/DA/712:719 | homologous HL_7RQB_022 | NA HL_93727.5* | ||
| 1/DA/744:753 | homologous HL_7RQB_023 | NA HL_39334.5* | ||
| 1/DA/779:785 | homologous HL_7RQB_024 | NA HL_16898.3* | ||
| 1/DA/826:831 | homologous HL_7RQB_025 | NA HL_15942.5* | ||
| 1/DA/955:962 | homologous HL_7RQB_027 | NA HL_43074.18* | ||
| 1/DA/978:985 | homologous HL_7RQB_028 | NA HL_72451.5* | ||
| 1/DA/1222:1227 | homologous HL_7RQB_032 | NA HL_43074.18* | ||
| 1/DA/1281:1289 | homologous HL_7RQB_033 | NA HL_33239.17* | ||
| 1/DA/1324:1330 | homologous HL_7RQB_034 | NA HL_86880.5* | ||
| 1/DA/1363:1368 | homologous HL_7RQB_035 | NA HL_43074.18* | ||
| 1/DA/1389:1398 | homologous HL_7RQB_036 | NA HL_78457.4* | ||
| 1/DA/1451:1459 | homologous HL_7RQB_037 | NA HL_71540.1* | ||
| 1/DA/1492:1498 | homologous HL_7RQB_038 | NA HL_86880.5* | ||
| 1/DA/1565:1568 | homologous HL_7RQB_039 | NA HL_69353.7* | ||
| 1/DA/1612:1619 | homologous HL_7RQB_040 | NA HL_66171.3* | ||
| 1/DA/1631:1635 | homologous HL_7RQB_041 | NA HL_86880.5* | ||
| 1/DA/1691:1696 | UNCG geometric HL_5J7L_175 | NA HL_79299.11* | ||
| 1/DA/1720:1742 | homologous HL_7RQB_043 | NA HL_49638.1* | ||
| 1/DA/1752:1756 | homologous HL_7RQB_044 | NA HL_79272.3* | ||
| 1/DA/1777:1787 | homologous HL_7RQB_045 | NA HL_43613.4* | ||
| 1/DA/1806:1811 | homologous HL_7RQB_046 | NA HL_43074.18* | ||
| 1/DA/1864:1878 | homologous HL_7RQB_047 | NA HL_43074.18* | ||
| 1/DA/1910:1920 | geometric HL_5TBW_049 | NA HL_98248.1* | ||
| 1/DA/1949:1957 | homologous HL_7RQB_049 | NA HL_53760.4* | ||
| 1/DA/2027:2036 | homologous HL_7RQB_050 | NA HL_90642.5* | ||
| 1/DA/2248:2256 | homologous HL_7RQB_053 | NA | ||
| 1/DA/2264:2276 | homologous HL_7RQB_054 | NA HL_19870.5* | ||
| 1/DA/2303:2313 | homologous HL_7RQB_055 | NA HL_11805.3* | ||
| 1/DA/2324:2331 | homologous HL_7RQB_056 | NA HL_46142.8* | ||
| 1/DA/2355:2362 | homologous HL_7RQB_057 | NA HL_93727.5* | ||
| 1/DA/2374:2379 | homologous HL_7RQB_058 | NA HL_43074.18* | ||
| 1/DA/2404:2413 | homologous HL_7RQB_059 | NA HL_48376.4* | ||
| 1/DA/2471:2479 | homologous HL_7RQB_060 | NA HL_36421.5* | ||
| 1/DA/2528:2535 | homologous HL_7RQB_061 | NA HL_92681.5* | ||
| 1/DA/2551:2557 | geometric HL_4WF9_058 | NA HL_26055.6* | ||
| 1/DA/2594:2599 | homologous HL_7RQB_063 | NA HL_43074.18* | ||
| 1/DA/2658:2663 | GNRA geometric HL_4BW0_001 | NA HL_43074.18* | ||
| 1/DA/2701:2706 | homologous HL_7RQB_065 | NA HL_31583.1* | ||
| 1/DA/2745:2759 | homologous HL_7RQB_066 | NA HL_56677.5* | ||
| 1/DA/2819:2827 | homologous HL_7RQB_068 | NA HL_05018.6* | ||
| 1/DA/2856:2861 | homologous HL_7RQB_069 | NA HL_43074.18* | ||
| 1/DB/38:44 | homologous HL_5TBW_185 | NA HL_02733.5* | ||
| 1/DB/86:91 | GNRA homologous HL_5TBW_186 | NA HL_43074.18* |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4W2I_002 | NA | ||
| HL_4W2I_003 | NA | ||
| HL_4W2I_009 | NA | ||
| HL_4W2I_033 | NA | ||
| HL_4W2I_039 | NA | ||
| HL_4W2I_040 | NA | ||
| HL_4W2I_041 | NA | ||
| HL_4W2I_057 | homologous HL_7RQB_017 | ||
| HL_4W2I_066 | homologous HL_7RQB_026 | ||
| HL_4W2I_067 | homologous HL_7RQB_027 | ||
| HL_4W2I_068 | homologous HL_7RQB_028 | ||
| HL_4W2I_069 | NA | ||
| HL_4W2I_070 | homologous HL_7RQB_031 | ||
| HL_4W2I_073 | homologous HL_7RQB_034 | ||
| HL_4W2I_078 | NA | ||
| HL_4W2I_090 | homologous HL_7RQB_050 | ||
| HL_4W2I_091 | NA | ||
| HL_4W2I_107 | homologous HL_7RQB_067 | ||
| HL_4W2I_113 | NA | ||
| HL_4W2I_131 | NA | ||
| HL_4W2I_144 | NA | ||
| HL_4W2I_150 | NA | ||
| HL_4W2I_151 | NA | ||
| HL_4W2I_152 | NA | ||
| HL_4W2I_157 | NA | ||
| HL_4W2I_169 | homologous HL_7RQB_017 | ||
| HL_4W2I_178 | NA | ||
| HL_4W2I_181 | NA | ||
| HL_4W2I_189 | NA | ||
| HL_4W2I_202 | UNCG geometric HL_3U4M_001 | ||
| HL_4W2I_203 | homologous HL_7RQB_052 | ||
| HL_4W2I_218 | NA |
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/AA/30:32, 1/AA/552:553 | NA | NA | ||
| 1/AA/44:45, 1/AA/396:398 | NA | NA | ||
| 1/AA/47:52, 1/AA/359:361 | NA | NA | ||
| 1/AA/54:56, 1/AA/356:357 | NA | NA | ||
| 1/AA/63:66, 1/AA/103:104 | NA | NA | ||
| 1/AA/67:69, 1/AA/100:102 | NA | NA | ||
| 1/AA/129:131, 1/AA/231:232 | NA | NA | ||
| 1/AA/132:136, 1/AA/227:230 | NA | NA | ||
| 1/AA/148:153, 1/AA/168:174 | NA | NA | ||
| 1/AA/186:188, 1/AA/189L:191 | NA | NA | ||
| 1/AA/242:247, 1/AA/277:284 | NA | NA | ||
| 1/AA/249:252, 1/AA/274:275 | NA | NA | ||
| 1/AA/292:293, 1/AA/304:308 | NA | NA | ||
| 1/AA/367:369, 1/AA/392:393 | NA | NA | ||
| 1/AA/371:375, 1/AA/389:390 | NA | NA | ||
| 1/AA/375:376, 1/AA/387:389 | NA | NA | ||
| 1/AA/409:416, 1/AA/427:433 | NA | NA | ||
| 1/AA/446:450, 1/AA/483:488 | NA | NA | ||
| 1/AA/450:455, 1/AA/476:483 | NA | NA | ||
| 1/AA/504:511, 1/AA/540:541 | NA | NA | ||
| 1/AA/515:521, 1/AA/528:536 | NA | NA | ||
| 1/AA/569:575, 1/AA/880:881 | NA | NA | ||
| 1/AA/580:584, 1/AA/757:761 | NA | NA | ||
| 1/AA/594:596, 1/AA/644:645 | NA | NA | ||
| 1/AA/597:598, 1/AA/640:643 | NA | NA | ||
| 1/AA/605:612, 1/AA/628:633 | NA | NA | ||
| 1/AA/654:655, 1/AA/751:754 | NA | NA | ||
| 1/AA/657:658, 1/AA/747:749 | NA | NA | ||
| 1/AA/662:666, 1/AA/740:743 | NA | NA | ||
| 1/AA/673:678, 1/AA/712:717 | NA | NA | ||
| 1/AA/683:688, 1/AA/699:707 | NA | NA | ||
| 1/AA/774:778, 1/AA/804:805 | NA | NA | ||
| 1/AA/779:783, 1/AA/799:803 | NA | NA | ||
| 1/AA/887:894, 1/AA/905:910 | NA | NA | ||
| 1/AA/922:923, 1/AA/1393:1395 | NA | NA | ||
| 1/AA/925:927, 1/AA/1390:1391 | NA | NA | ||
| 1/AA/933:935, 1/AA/1380:1384 | NA | NA | ||
| 1/AA/953:954, 1/AA/1226:1228 | NA | NA | ||
| 1/AA/993:997, 1/AA/1044:1045 | NA | NA | ||
| 1/AA/1025:1028, 1/AA/1033:1035 | NA | NA | ||
| 1/AA/1048:1050, 1/AA/1208:1209 | NA | NA | ||
| 1/AA/1052:1056, 1/AA/1204:1206 | NA | NA | ||
| 1/AA/1057:1058, 1/AA/1199:1203 | NA | NA | ||
| 1/AA/1060:1061, 1/AA/1195:1197 | NA | NA | ||
| 1/AA/1061:1063, 1/AA/1193:1195 | NA | NA | ||
| 1/AA/1124:1127, 1/AA/1145:1149 | NA | NA | ||
| 1/AA/1129:1132, 1/AA/1142:1143 | NA | NA | ||
| 1/AA/1247:1253, 1/AA/1284:1290 | NA | NA | ||
| 1/AA/1255:1258, 1/AA/1277:1282 | NA | NA | ||
| 1/AA/1259:1260, 1/AA/1274:1276 | NA | NA | ||
| 1/AA/1260:1262, 1/AA/1273:1274 | NA | NA | ||
| 1/AA/1303:1308, 1/AA/1329:1334 | NA | NA | ||
| 1/AA/1399:1401, 1/AA/1501:1504 | NA | NA | ||
| 1/AA/1401:1404, 1/AA/1497:1501 | NA | NA | ||
| 1/AA/1405:1407, 1/AA/1494:1496 | NA | NA | ||
| 1/AA/1407:1409, 1/AA/1491:1494 | NA | NA | ||
| 1/AA/1412:1414, 1/AA/1486:1488 | NA | NA | ||
| 1/AA/1416:1419, 1/AA/1481:1484 | NA | NA | ||
| 1/AA/1431:1435, 1/AA/1466:1469 | NA | NA | ||
| 1/AA/1435:1437, 1/AA/1464:1466 | NA | NA | ||
| 1/AA/1440:1443, 1/AA/1459:1461 | NA | NA | ||
| 1/BA/24:30, 1/BA/535:541 | Triple sheared with non-canonical cWW homologous IL_7RQB_001 | NA IL_66414.5* | ||
| 1/BA/36:37, 1/BA/468:470 | Single bulged A homologous IL_7RQB_002 | NA IL_80007.16* | ||
| 1/BA/42:43, 1/BA/461:463 | Minor groove platform homologous IL_7RQB_003 | NA IL_06437.11* | ||
| 1/BA/80:84, 1/BA/96:103 | Kink-turn homologous IL_7RQB_004 | NA IL_29549.9* | ||
| 1/BA/172:173, 1/BA/201:203 | Single stack bend homologous IL_7RQB_005 | NA IL_04038.4* | ||
| 1/BA/177:183, 1/BA/190:197 | 8x7 Sarcin-Ricin; G-bulge geometric IL_7RQB_006 | NA IL_04346.5* | ||
| 1/BA/228:234, 1/BA/242:247 | 7x6 Sarcin-Ricin; G-bulge homologous IL_7RQB_007 | NA IL_35110.5* | ||
| 1/BA/291:292, 1/BA/392:394 | Major groove platform homologous IL_7RQB_009 | NA IL_13730.12* | ||
| 1/BA/304:308, 1/BA/381:384 | tSH-tHW homologous IL_7RQB_011 | NA IL_08757.3* | ||
| 1/BA/312:314, 1/BA/374:377 | Isolated tHS basepair with bulges homologous IL_7RQB_012 | NA IL_38958.6* | ||
| 1/BA/317:319, 1/BA/367:371 | homologous IL_7RQB_013 | NA IL_69440.1* | ||
| 1/BA/507:510, 1/BA/521:534 | homologous IL_7RQB_014 | NA IL_60992.5* | ||
| 1/BA/629:633, 1/BA/643:647 | AAA cross-strand stack homologous IL_7RQB_016 | NA IL_56467.6* | ||
| 1/BA/744:745, 1/BA/810:812 | Single bulged A homologous IL_7RQB_019 | NA IL_80007.16* | ||
| 1/BA/749:750, 1/BA/775:777 | Single bulged G geometric IL_7RQB_020 | NA IL_59137.10* | ||
| 1/BA/750:754, 1/BA/771:775 | Triple sheared homologous IL_7RQB_021 | NA IL_56467.6* | ||
| 1/BA/785:788, 1/BA/803:805 | Major groove platform with extra cWW homologous IL_7RQB_022 | NA IL_95485.6* | ||
| 1/BA/884:885, 1/BA/985:987 | Single stack bend homologous IL_7RQB_024 | NA IL_04038.4* | ||
| 1/BA/891:893, 1/BA/976:979 | Intercalated cWW geometric IL_7RQB_025 | NA IL_01312.13* | ||
| 1/BA/893:897, 1/BA/973:976 | homologous IL_7RQB_026 | NA IL_94165.1* | ||
| 1/BA/905:909, 1/BA/961:965 | 5x5 Sarcin-Ricin with intercalated A; G-bulge homologous IL_7RQB_027 | NA IL_83354.1* | ||
| 1/BA/909:910, 1/BA/959:961 | Minor groove platform geometric IL_4V9F_034 | NA IL_06437.11* | ||
| 1/BA/911:915, 1/BA/955:958 | C-loop homologous IL_7RQB_029 | NA IL_63596.4* | ||
| 1/BA/917:919, 1/BA/951:953 | Isolated cWS basepair homologous IL_7RQB_030 | NA IL_67621.5* | ||
| 1/BA/922:924, 1/BA/945:948 | Minor groove platform with extra cWW homologous IL_7RQB_031 | NA IL_87332.1* | ||
| 1/BA/924:929, 1/BA/940:945 | NA | NA | ||
| 1/BA/1040:1042, 1/BA/1205:1206 | Single bulged C homologous IL_7RQB_035 | NA IL_61258.10* | ||
| 1/BA/1044:1048, 1/BA/1199:1203 | UAA/GAN homologous IL_7RQB_036 | NA IL_53523.5* | ||
| 1/BA/1050:1057, 1/BA/1196:1197 | SSU/LSU pseudoknot homologous IL_7RQB_037 | NA IL_15861.6* | ||
| 1/BA/1057:1059, 1/BA/1195:1196 | Single bulged U geometric IL_7RQB_038 | NA IL_83039.11* | ||
| 1/BA/1064:1070, 1/BA/1185:1190 | geometric IL_4WF9_039 | NA IL_57188.3* | ||
| 1/BA/1070:1076, 1/BA/1170:1185 | homologous IL_7RQB_040 | NA IL_55786.1* | ||
| 1/BA/1077:1080, 1/BA/1167:1169 | Isolated non-canonical cWW with bulges homologous IL_7RQB_041 | NA IL_55456.1* | ||
| 1/BA/1241:1243, 1/BA/1293:1296 | Isolated cWS basepair homologous IL_7RQB_045 | NA IL_67621.5* | ||
| 1/BA/1247:1251, 1/BA/1286:1289 | homologous IL_7RQB_046 | NA IL_68574.2* | ||
| 1/BA/1253:1260, 1/BA/1280:1284 | Kink-turn homologous IL_7RQB_047 | NA IL_29549.9* | ||
| 1/BA/1264:1266, 1/BA/1275:1276 | Single bulged A homologous IL_7RQB_048 | NA IL_80007.16* | ||
| 1/BA/1356:1359, 1/BA/1649:1650 | Major groove platform; stack outside cWW homologous IL_7RQB_050 | NA IL_70995.6* | ||
| 1/BA/1365:1369, 1/BA/1377:1379 | C-loop homologous IL_7RQB_051 | NA IL_63596.4* | ||
| 1/BA/1397:1401, 1/BA/1422:1426 | UAA/GAN homologous IL_7RQB_052 | NA IL_53523.5* | ||
| 1/BA/1403:1407, 1/BA/1416:1420 | tSH-tHW-tHS homologous IL_7RQB_053 | NA IL_39521.5* | ||
| 1/BA/1461:1462, 1/BA/1629:1633 | homologous IL_7RQB_054 | NA IL_67474.3* | ||
| 1/BA/1463:1467, 1/BA/1624:1628 | UAA/GAN homologous IL_7RQB_055 | NA IL_53523.5* | ||
| 1/BA/1479:1481, 1/BA/1604:1607 | Isolated tWW turn homologous IL_7RQB_056 | NA IL_54997.5* | ||
| 1/BA/1483:1486, 1/BA/1598:1602 | tSH-tHW homologous IL_7RQB_057 | NA IL_08757.3* | ||
| 1/BA/1495:1497, 1/BA/1509:1510 | Single stack bend homologous IL_7RQB_058 | NA IL_31836.1* | ||
| 1/BA/1498:1499, 1/BA/1506:1508 | Single bulged A geometric IL_7RQB_059 | NA IL_80007.16* | ||
| 1/BA/1516:1520, 1/BA/1566:1569 | UAA/GAN homologous IL_7RQB_060 | NA IL_53523.5* | ||
| 1/BA/1528:1529, 1/BA/1552:1558 | homologous IL_7RQB_061 | NA IL_46464.1* | ||
| 1/BA/1535:1537, 1/BA/1545:1546 | Single bulged A homologous IL_7RQB_062 | NA IL_40508.4* | ||
| 1/BA/1698:1703, 1/BA/2026:2028 | homologous IL_7RQB_064 | NA IL_12566.2* | ||
| 1/BA/1710:1712, 1/BA/2017:2019 | Isolated tWW turn homologous IL_7RQB_065 | NA IL_54997.5* | ||
| 1/BA/1716:1721, 1/BA/2012:2015 | Intercalated tWH geometric IL_7RQB_067 | NA IL_01312.13* | ||
| 1/BA/1733:1738, 1/BA/1743:1749 | tSH-tSH-tHH-tHS homologous IL_7RQB_068 | NA IL_66584.5* | ||
| 1/BA/1801:1802, 1/BA/2002:2004 | Single bulged A homologous IL_7RQB_069 | NA IL_80007.16* | ||
| 1/BA/1829:1835, 1/BA/1844:1852 | Kink-turn related homologous IL_7RQB_070 | NA IL_17069.3* | ||
| 1/BA/1868:1871, 1/BA/1924:1925 | Major groove outside cWW, minor groove, intercalation pocket homologous IL_7RQB_071 | NA IL_31836.1* | ||
| 1/BA/1872:1873, 1/BA/1920:1923 | Major groove outside cWW, minor groove, intercalation pocket homologous IL_7RQB_072 | NA IL_13730.12* | ||
| 1/BA/1877:1880, 1/BA/1915:1916 | Minor groove platform homologous IL_7RQB_073 | NA IL_06437.11* | ||
| 1/BA/1882:1886, 1/BA/1909:1913 | UAA/GAN with extra pair homologous IL_7RQB_074 | NA IL_34907.2* | ||
| 1/BA/1887:1891, 1/BA/1904:1908 | Triple sheared homologous IL_7RQB_075 | NA IL_56467.6* | ||
| 1/BA/1955:1956, 1/BA/1986:1989 | Multiple bulged bases geometric IL_7RQB_076 | NA IL_69632.1* | ||
| 1/BA/1956:1967, 1/BA/1983:1986 | geometric IL_4WF9_077 | NA IL_70285.1* | ||
| 1/BA/2076:2079, 1/BA/2623:2627 | homologous IL_7RQB_079 | NA IL_01206.1* | ||
| 1/BA/2089:2091, 1/BA/2454:2455 | Single bulged U homologous IL_7RQB_080 | NA IL_83039.11* | ||
| 1/BA/2103:2105, 1/BA/2248:2251 | Isolated tHS basepair with bulges homologous IL_7RQB_082 | NA IL_38958.6* | ||
| 1/BA/2107:2109, 1/BA/2244:2246 | homologous IL_7RQB_083 | NA IL_01312.13* | ||
| 1/BA/2309:2311, 1/BA/2329:2333 | Isolated tHS basepair with bulges homologous IL_7RQB_088 | NA IL_38958.6* | ||
| 1/BA/2362:2365, 1/BA/2376:2379 | Double sheared homologous IL_7RQB_089 | NA IL_09705.7* | ||
| 1/BA/2413:2415, 1/BA/2426:2427 | Major groove platform homologous IL_7RQB_090 | NA IL_80663.10* | ||
| 1/BA/2471:2473, 1/BA/2501:2505 | Major groove minor groove platform with extra cWW homologous IL_7RQB_094 | NA IL_96042.4* | ||
| 1/BA/2478:2482, 1/BA/2492:2496 | Triple sheared homologous IL_7RQB_095 | NA IL_56467.6* | ||
| 1/BA/2522:2524, 1/BA/2586:2590 | Isolated non-canonical cWW with bulges geometric IL_7RQB_097 | NA IL_01312.13* | ||
| 1/BA/2524:2525, 1/BA/2583:2586 | Multiple bulged bases homologous IL_7RQB_098 | NA IL_13730.12* | ||
| 1/BA/2648:2652, 1/BA/2787:2795 | tSH-tHS-tHW homologous IL_7RQB_102 | NA IL_34907.2* | ||
| 1/BA/2664:2670, 1/BA/2675:2680 | Sarcin-Ricin target in LSU H95; G-bulge homologous IL_7RQB_103 | NA IL_35110.5* | ||
| 1/BA/2692:2696, 1/BA/2738:2740 | C-loop homologous IL_7RQB_104 | NA IL_63596.4* | ||
| 1/BA/2699:2703, 1/BA/2731:2735 | homologous IL_7RQB_105 | NA IL_08296.3* | ||
| 1/BA/2707:2708, 1/BA/2723:2727 | Multiple bulged bases homologous IL_7RQB_106 | NA IL_77034.1* | ||
| 1/BA/2750:2755, 1/BA/2775:2780 | UAA/GAN with extra cWW geometric IL_5J7L_350 | NA IL_49767.4* | ||
| 1/BA/2848:2849, 1/BA/2888:2890 | Single bulged C homologous IL_7RQB_108 | NA IL_61258.10* | ||
| 1/BA/2853:2856, 1/BA/2880:2884 | homologous IL_7RQB_109 | NA IL_58764.1* | ||
| 1/BA/2857:2862, 1/BA/2875:2879 | homologous IL_7RQB_110 | NA IL_83162.3* | ||
| 1/BB/17:18, 1/BB/65:67 | Major groove intercalation geometric IL_7RQB_111 | NA IL_80007.16* | ||
| 1/BB/23:28, 1/BB/56:60 | geometric IL_5J7L_356 | NA IL_18472.1* | ||
| 1/BB/30:32, 1/BB/50:54 | geometric IL_4WF9_114 | NA IL_45289.1* | ||
| 1/BB/34:38, 1/BB/44:48 | Symmetric double minor groove platform homologous IL_5TBW_376 | NA IL_58103.5* | ||
| 1/BB/71:79, 1/BB/98:106 | Bacterial 5S Loop E geometric IL_7RQB_115 | NA IL_56455.3* | ||
| 1/CA/30:32, 1/CA/552:553 | NA | NA | ||
| 1/CA/44:45, 1/CA/396:398 | NA | NA | ||
| 1/CA/47:52, 1/CA/359:361 | NA | NA | ||
| 1/CA/54:56, 1/CA/356:357 | NA | NA | ||
| 1/CA/63:66, 1/CA/103:104 | NA | NA | ||
| 1/CA/67:69, 1/CA/100:102 | NA | NA | ||