Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/AA/12:22NANA
1/AA/189C:189HNANA
1/AA/201:216NANA
1/AA/259:267NANA
1/AA/296:301NANA
1/AA/320:333NANA
1/AA/379:384NANA
1/AA/419:424NANA
1/AA/458:473NANA
1/AA/522:527NANA
1/AA/617:623NANA
1/AA/689:698NANA
1/AA/726:731NANA
1/AA/786:796NANA
1/AA/838:848NANA
1/AA/862:867NANA
1/AA/897:902NANA
1/AA/963:972NANA
1/AA/1012:1017NANA
1/AA/1029:1032NANA
1/AA/1076:1081NANA
1/AA/1089:1096NANA
1/AA/1134:1140NANA
1/AA/1165:1171NANA
1/AA/1265:1270NANA
1/AA/1314:1323NANA
1/AA/1356:1366NANA
1/AA/1445:1457NANA
1/AA/1515:1520NANA
1/AW/30:40NANA
1/AW/53:61NANA
1/AX/13:22NANA
1/AX/31:39NANA
1/AX/53:61NANA
1/BA/58:67
homologous
HL_7RQB_001
NA

HL_29414.1*
1/BA/86:94
homologous
HL_7RQB_002
NA

HL_17926.5*
1/BA/121:126
homologous
HL_7RQB_003
NA

HL_62869.3*
1/BA/136:141
homologous
HL_7RQB_004
NA

HL_86069.1*
1/BA/183:190
homologous
HL_7RQB_006
NA

HL_23481.5*
1/BA/214:219
homologous
HL_7RQB_007
NA

HL_06569.2*
1/BA/235:241
homologous
HL_7RQB_008
NA

HL_67216.5*
1/BA/269:275
geometric
HL_5J7L_018
NA

HL_93229.1*
1/BA/329:336
homologous
HL_7RQB_010
NA

HL_68493.6*
1/BA/343:347
homologous
HL_7RQB_011
NA

HL_98557.5*
1/BA/351:359
homologous
HL_7RQB_012
NA

HL_08002.6*
1/BA/409:419
homologous
HL_7RQB_013
NA

HL_91503.3*
1/BA/437:444
homologous
HL_7RQB_014
NA

HL_32512.8*
1/BA/488:493
homologous
HL_7RQB_015
NA

HL_43074.18*
1/BA/513:518
homologous
HL_7RQB_016
NA

HL_43074.18*
1/BA/589:598
geometric
HL_7RQB_018
NA

HL_33239.17*
1/BA/635:641
homologous
HL_7RQB_019
NA

HL_49196.4*
1/BA/654:659
homologous
HL_7RQB_020
NA

HL_43074.18*
1/BA/666:672
homologous
HL_7RQB_021
NA

HL_02361.6*
1/BA/759:766
homologous
HL_7RQB_022
NA

HL_93727.5*
1/BA/791:800
homologous
HL_7RQB_023
NA

HL_39334.5*
1/BA/826:832
homologous
HL_7RQB_024
NA

HL_16898.3*
1/BA/873:878
homologous
HL_7RQB_025
NA

HL_15942.5*
1/BA/1268:1273
homologous
HL_7RQB_032
NA

HL_43074.18*
1/BA/1327:1335
homologous
HL_7RQB_033
NA

HL_33239.17*
1/BA/1409:1414
homologous
HL_7RQB_035
NA

HL_43074.18*
1/BA/1435:1444
homologous
HL_7RQB_036
NA

HL_78457.4*
1/BA/1499:1506
homologous
HL_7RQB_037
NA

HL_71540.1*
1/BA/1538:1544
homologous
HL_7RQB_038
NA

HL_86880.5*
1/BA/1612:1615
homologous
HL_7RQB_039
NA

HL_69353.7*
1/BA/1658:1665
homologous
HL_7RQB_040
NA

HL_66171.3*
1/BA/1677:1682
homologous
HL_7RQB_041
NA

HL_86880.5*
1/BA/1738:1743
geometric
HL_7RQB_042
NA

HL_79299.11*
1/BA/1765:1771
homologous
HL_7RQB_043
NA

HL_49638.1*
1/BA/1783:1787
homologous
HL_7RQB_044
NA

HL_79272.3*
1/BA/1808:1818
homologous
HL_7RQB_045
NA

HL_43613.4*
1/BA/1837:1842
homologous
HL_7RQB_046
NA

HL_43074.18*
1/BA/1895:1900
homologous
HL_7RQB_047
NA

HL_43074.18*
1/BA/1932:1942
geometric
HL_5TBW_049
NA

HL_98248.1*
1/BA/1971:1979
homologous
HL_7RQB_049
NA

HL_53760.4*
1/BA/2226:2231
homologous
HL_7RQB_052
NA

HL_82131.1*
1/BA/2260:2268
homologous
HL_7RQB_053
NA
1/BA/2276:2288
homologous
HL_7RQB_054
NA

HL_19870.5*
1/BA/2315:2325
homologous
HL_7RQB_055
NA

HL_11805.3*
1/BA/2336:2343
homologous
HL_7RQB_056
NA

HL_46142.8*
1/BA/2367:2374
homologous
HL_7RQB_057
NA

HL_93727.5*
1/BA/2386:2391
homologous
HL_7RQB_058
NA

HL_43074.18*
1/BA/2416:2425
homologous
HL_7RQB_059
NA

HL_48376.4*
1/BA/2483:2491
homologous
HL_7RQB_060
NA

HL_36421.5*
1/BA/2540:2547
homologous
HL_7RQB_061
NA

HL_92681.5*
1/BA/2563:2569
geometric
HL_4WF9_058
NA

HL_26055.6*
1/BA/2606:2611
homologous
HL_7RQB_063
NA

HL_43074.18*
1/BA/2670:2675GNRA
geometric
HL_4V9F_066
NA

HL_43074.18*
1/BA/2713:2718
homologous
HL_7RQB_065
NA

HL_31583.1*
1/BA/2758:2772
homologous
HL_7RQB_066
NA

HL_56677.5*
1/BA/2829:2837
homologous
HL_7RQB_068
NA

HL_05018.6*
1/BA/2866:2871
homologous
HL_7RQB_069
NA

HL_43074.18*
1/BB/38:44
geometric
HL_7RQB_070
NA

HL_02733.5*
1/BB/86:91GNRA
homologous
HL_5TBW_186
NA

HL_43074.18*
1/CA/12:22NANA
1/CA/158:163NANA
1/CA/189C:189HNANA
1/CA/201:216NANA
1/CA/259:267NANA
1/CA/296:301NANA
1/CA/320:333NANA
1/CA/342:347NANA
1/CA/379:384NANA
1/CA/419:424NANA
1/CA/458:473NANA
1/CA/522:527NANA
1/CA/617:623NANA
1/CA/689:698NANA
1/CA/726:731NANA
1/CA/786:796NANA
1/CA/838:848NANA
1/CA/862:867NANA
1/CA/963:972NANA
1/CA/1012:1017NANA
1/CA/1030:1031NANA
1/CA/1076:1081NANA
1/CA/1089:1096NANA
1/CA/1134:1140NANA
1/CA/1165:1171NANA
1/CA/1265:1270NANA
1/CA/1314:1323NANA
1/CA/1356:1366NANA
1/CA/1445:1457NANA
1/CA/1515:1520NANA
1/CW/30:40NANA
1/CW/53:61NANA
1/CX/13:22NANA
1/CX/31:39NANA
1/CX/53:61NANA
1/DA/59:68
homologous
HL_7RQB_001
NA

HL_29414.1*
1/DA/87:95
homologous
HL_7RQB_002
NA

HL_17926.5*
1/DA/123:128
homologous
HL_7RQB_003
NA

HL_62869.3*
1/DA/139:142A
homologous
HL_7RQB_004
NA

HL_86069.1*
1/DA/194:201
geometric
HL_7RQB_006
NA

HL_23481.5*
1/DA/225:230
homologous
HL_7RQB_007
NA

HL_06569.2*
1/DA/246:252
homologous
HL_7RQB_008
NA

HL_67216.5*
1/DA/271I:271O
geometric
HL_5J7L_018
NA

HL_93229.1*
1/DA/305:312
homologous
HL_7RQB_010
NA

HL_68493.6*
1/DA/319:323
homologous
HL_7RQB_011
NA

HL_98557.5*
1/DA/327:335
homologous
HL_7RQB_012
NA

HL_08002.6*
1/DA/382:392
homologous
HL_7RQB_013
NA

HL_91503.3*
1/DA/410:417
homologous
HL_7RQB_014
NA

HL_32512.8*
1/DA/462:467
homologous
HL_7RQB_015
NA

HL_43074.18*
1/DA/487:493
homologous
HL_7RQB_016
NA

HL_43074.18*
1/DA/566:575
geometric
HL_7RQB_018
NA

HL_33239.17*
1/DA/612:615
homologous
HL_7RQB_019
NA

HL_49196.4*
1/DA/629:634
homologous
HL_7RQB_020
NA

HL_43074.18*
1/DA/641:647
homologous
HL_7RQB_021
NA

HL_02361.6*
1/DA/712:719
homologous
HL_7RQB_022
NA

HL_93727.5*
1/DA/744:753
homologous
HL_7RQB_023
NA

HL_39334.5*
1/DA/779:785
homologous
HL_7RQB_024
NA

HL_16898.3*
1/DA/826:831
homologous
HL_7RQB_025
NA

HL_15942.5*
1/DA/955:962
homologous
HL_7RQB_027
NA

HL_43074.18*
1/DA/978:985
homologous
HL_7RQB_028
NA

HL_72451.5*
1/DA/1222:1227
homologous
HL_7RQB_032
NA

HL_43074.18*
1/DA/1281:1289
homologous
HL_7RQB_033
NA

HL_33239.17*
1/DA/1324:1330
homologous
HL_7RQB_034
NA

HL_86880.5*
1/DA/1363:1368
homologous
HL_7RQB_035
NA

HL_43074.18*
1/DA/1389:1398
homologous
HL_7RQB_036
NA

HL_78457.4*
1/DA/1451:1459
homologous
HL_7RQB_037
NA

HL_71540.1*
1/DA/1492:1498
homologous
HL_7RQB_038
NA

HL_86880.5*
1/DA/1565:1568
homologous
HL_7RQB_039
NA

HL_69353.7*
1/DA/1612:1619
homologous
HL_7RQB_040
NA

HL_66171.3*
1/DA/1631:1635
homologous
HL_7RQB_041
NA

HL_86880.5*
1/DA/1691:1696UNCG
geometric
HL_5J7L_175
NA

HL_79299.11*
1/DA/1720:1742
homologous
HL_7RQB_043
NA

HL_49638.1*
1/DA/1752:1756
homologous
HL_7RQB_044
NA

HL_79272.3*
1/DA/1777:1787
homologous
HL_7RQB_045
NA

HL_43613.4*
1/DA/1806:1811
homologous
HL_7RQB_046
NA

HL_43074.18*
1/DA/1864:1878
homologous
HL_7RQB_047
NA

HL_43074.18*
1/DA/1910:1920
geometric
HL_5TBW_049
NA

HL_98248.1*
1/DA/1949:1957
homologous
HL_7RQB_049
NA

HL_53760.4*
1/DA/2027:2036
homologous
HL_7RQB_050
NA

HL_90642.5*
1/DA/2248:2256
homologous
HL_7RQB_053
NA
1/DA/2264:2276
homologous
HL_7RQB_054
NA

HL_19870.5*
1/DA/2303:2313
homologous
HL_7RQB_055
NA

HL_11805.3*
1/DA/2324:2331
homologous
HL_7RQB_056
NA

HL_46142.8*
1/DA/2355:2362
homologous
HL_7RQB_057
NA

HL_93727.5*
1/DA/2374:2379
homologous
HL_7RQB_058
NA

HL_43074.18*
1/DA/2404:2413
homologous
HL_7RQB_059
NA

HL_48376.4*
1/DA/2471:2479
homologous
HL_7RQB_060
NA

HL_36421.5*
1/DA/2528:2535
homologous
HL_7RQB_061
NA

HL_92681.5*
1/DA/2551:2557
geometric
HL_4WF9_058
NA

HL_26055.6*
1/DA/2594:2599
homologous
HL_7RQB_063
NA

HL_43074.18*
1/DA/2658:2663GNRA
geometric
HL_4BW0_001
NA

HL_43074.18*
1/DA/2701:2706
homologous
HL_7RQB_065
NA

HL_31583.1*
1/DA/2745:2759
homologous
HL_7RQB_066
NA

HL_56677.5*
1/DA/2819:2827
homologous
HL_7RQB_068
NA

HL_05018.6*
1/DA/2856:2861
homologous
HL_7RQB_069
NA

HL_43074.18*
1/DB/38:44
homologous
HL_5TBW_185
NA

HL_02733.5*
1/DB/86:91GNRA
homologous
HL_5TBW_186
NA

HL_43074.18*

Problematic loops

#loop idProblemSequence
HL_4W2I_002NA
HL_4W2I_003NA
HL_4W2I_009NA
HL_4W2I_033NA
HL_4W2I_039NA
HL_4W2I_040NA
HL_4W2I_041NA
HL_4W2I_057
homologous
HL_7RQB_017
HL_4W2I_066
homologous
HL_7RQB_026
HL_4W2I_067
homologous
HL_7RQB_027
HL_4W2I_068
homologous
HL_7RQB_028
HL_4W2I_069NA
HL_4W2I_070
homologous
HL_7RQB_031
HL_4W2I_073
homologous
HL_7RQB_034
HL_4W2I_078NA
HL_4W2I_090
homologous
HL_7RQB_050
HL_4W2I_091NA
HL_4W2I_107
homologous
HL_7RQB_067
HL_4W2I_113NA
HL_4W2I_131NA
HL_4W2I_144NA
HL_4W2I_150NA
HL_4W2I_151NA
HL_4W2I_152NA
HL_4W2I_157NA
HL_4W2I_169
homologous
HL_7RQB_017
HL_4W2I_178NA
HL_4W2I_181NA
HL_4W2I_189NA
HL_4W2I_202UNCG
geometric
HL_3U4M_001
HL_4W2I_203
homologous
HL_7RQB_052
HL_4W2I_218NA

Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/AA/30:32,
1/AA/552:553
NANA
1/AA/44:45,
1/AA/396:398
NANA
1/AA/47:52,
1/AA/359:361
NANA
1/AA/54:56,
1/AA/356:357
NANA
1/AA/63:66,
1/AA/103:104
NANA
1/AA/67:69,
1/AA/100:102
NANA
1/AA/129:131,
1/AA/231:232
NANA
1/AA/132:136,
1/AA/227:230
NANA
1/AA/148:153,
1/AA/168:174
NANA
1/AA/186:188,
1/AA/189L:191
NANA
1/AA/242:247,
1/AA/277:284
NANA
1/AA/249:252,
1/AA/274:275
NANA
1/AA/292:293,
1/AA/304:308
NANA
1/AA/367:369,
1/AA/392:393
NANA
1/AA/371:375,
1/AA/389:390
NANA
1/AA/375:376,
1/AA/387:389
NANA
1/AA/409:416,
1/AA/427:433
NANA
1/AA/446:450,
1/AA/483:488
NANA
1/AA/450:455,
1/AA/476:483
NANA
1/AA/504:511,
1/AA/540:541
NANA
1/AA/515:521,
1/AA/528:536
NANA
1/AA/569:575,
1/AA/880:881
NANA
1/AA/580:584,
1/AA/757:761
NANA
1/AA/594:596,
1/AA/644:645
NANA
1/AA/597:598,
1/AA/640:643
NANA
1/AA/605:612,
1/AA/628:633
NANA
1/AA/654:655,
1/AA/751:754
NANA
1/AA/657:658,
1/AA/747:749
NANA
1/AA/662:666,
1/AA/740:743
NANA
1/AA/673:678,
1/AA/712:717
NANA
1/AA/683:688,
1/AA/699:707
NANA
1/AA/774:778,
1/AA/804:805
NANA
1/AA/779:783,
1/AA/799:803
NANA
1/AA/887:894,
1/AA/905:910
NANA
1/AA/922:923,
1/AA/1393:1395
NANA
1/AA/925:927,
1/AA/1390:1391
NANA
1/AA/933:935,
1/AA/1380:1384
NANA
1/AA/953:954,
1/AA/1226:1228
NANA
1/AA/993:997,
1/AA/1044:1045
NANA
1/AA/1025:1028,
1/AA/1033:1035
NANA
1/AA/1048:1050,
1/AA/1208:1209
NANA
1/AA/1052:1056,
1/AA/1204:1206
NANA
1/AA/1057:1058,
1/AA/1199:1203
NANA
1/AA/1060:1061,
1/AA/1195:1197
NANA
1/AA/1061:1063,
1/AA/1193:1195
NANA
1/AA/1124:1127,
1/AA/1145:1149
NANA
1/AA/1129:1132,
1/AA/1142:1143
NANA
1/AA/1247:1253,
1/AA/1284:1290
NANA
1/AA/1255:1258,
1/AA/1277:1282
NANA
1/AA/1259:1260,
1/AA/1274:1276
NANA
1/AA/1260:1262,
1/AA/1273:1274
NANA
1/AA/1303:1308,
1/AA/1329:1334
NANA
1/AA/1399:1401,
1/AA/1501:1504
NANA
1/AA/1401:1404,
1/AA/1497:1501
NANA
1/AA/1405:1407,
1/AA/1494:1496
NANA
1/AA/1407:1409,
1/AA/1491:1494
NANA
1/AA/1412:1414,
1/AA/1486:1488
NANA
1/AA/1416:1419,
1/AA/1481:1484
NANA
1/AA/1431:1435,
1/AA/1466:1469
NANA
1/AA/1435:1437,
1/AA/1464:1466
NANA
1/AA/1440:1443,
1/AA/1459:1461
NANA
1/BA/24:30,
1/BA/535:541
Triple sheared with non-canonical cWW
homologous
IL_7RQB_001
NA

IL_66414.5*
1/BA/36:37,
1/BA/468:470
Single bulged A
homologous
IL_7RQB_002
NA

IL_80007.16*
1/BA/42:43,
1/BA/461:463
Minor groove platform
homologous
IL_7RQB_003
NA

IL_06437.11*
1/BA/80:84,
1/BA/96:103
Kink-turn
homologous
IL_7RQB_004
NA

IL_29549.9*
1/BA/172:173,
1/BA/201:203
Single stack bend
homologous
IL_7RQB_005
NA

IL_04038.4*
1/BA/177:183,
1/BA/190:197
8x7 Sarcin-Ricin; G-bulge
geometric
IL_7RQB_006
NA

IL_04346.5*
1/BA/228:234,
1/BA/242:247
7x6 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_007
NA

IL_35110.5*
1/BA/291:292,
1/BA/392:394
Major groove platform
homologous
IL_7RQB_009
NA

IL_13730.12*
1/BA/304:308,
1/BA/381:384
tSH-tHW
homologous
IL_7RQB_011
NA

IL_08757.3*
1/BA/312:314,
1/BA/374:377
Isolated tHS basepair with bulges
homologous
IL_7RQB_012
NA

IL_38958.6*
1/BA/317:319,
1/BA/367:371

homologous
IL_7RQB_013
NA

IL_69440.1*
1/BA/507:510,
1/BA/521:534

homologous
IL_7RQB_014
NA

IL_60992.5*
1/BA/629:633,
1/BA/643:647
AAA cross-strand stack
homologous
IL_7RQB_016
NA

IL_56467.6*
1/BA/744:745,
1/BA/810:812
Single bulged A
homologous
IL_7RQB_019
NA

IL_80007.16*
1/BA/749:750,
1/BA/775:777
Single bulged G
geometric
IL_7RQB_020
NA

IL_59137.10*
1/BA/750:754,
1/BA/771:775
Triple sheared
homologous
IL_7RQB_021
NA

IL_56467.6*
1/BA/785:788,
1/BA/803:805
Major groove platform with extra cWW
homologous
IL_7RQB_022
NA

IL_95485.6*
1/BA/884:885,
1/BA/985:987
Single stack bend
homologous
IL_7RQB_024
NA

IL_04038.4*
1/BA/891:893,
1/BA/976:979
Intercalated cWW
geometric
IL_7RQB_025
NA

IL_01312.13*
1/BA/893:897,
1/BA/973:976

homologous
IL_7RQB_026
NA

IL_94165.1*
1/BA/905:909,
1/BA/961:965
5x5 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_7RQB_027
NA

IL_83354.1*
1/BA/909:910,
1/BA/959:961
Minor groove platform
geometric
IL_4V9F_034
NA

IL_06437.11*
1/BA/911:915,
1/BA/955:958
C-loop
homologous
IL_7RQB_029
NA

IL_63596.4*
1/BA/917:919,
1/BA/951:953
Isolated cWS basepair
homologous
IL_7RQB_030
NA

IL_67621.5*
1/BA/922:924,
1/BA/945:948
Minor groove platform with extra cWW
homologous
IL_7RQB_031
NA

IL_87332.1*
1/BA/924:929,
1/BA/940:945
NANA
1/BA/1040:1042,
1/BA/1205:1206
Single bulged C
homologous
IL_7RQB_035
NA

IL_61258.10*
1/BA/1044:1048,
1/BA/1199:1203
UAA/GAN
homologous
IL_7RQB_036
NA

IL_53523.5*
1/BA/1050:1057,
1/BA/1196:1197
SSU/LSU pseudoknot
homologous
IL_7RQB_037
NA

IL_15861.6*
1/BA/1057:1059,
1/BA/1195:1196
Single bulged U
geometric
IL_7RQB_038
NA

IL_83039.11*
1/BA/1064:1070,
1/BA/1185:1190

geometric
IL_4WF9_039
NA

IL_57188.3*
1/BA/1070:1076,
1/BA/1170:1185

homologous
IL_7RQB_040
NA

IL_55786.1*
1/BA/1077:1080,
1/BA/1167:1169
Isolated non-canonical cWW with bulges
homologous
IL_7RQB_041
NA

IL_55456.1*
1/BA/1241:1243,
1/BA/1293:1296
Isolated cWS basepair
homologous
IL_7RQB_045
NA

IL_67621.5*
1/BA/1247:1251,
1/BA/1286:1289

homologous
IL_7RQB_046
NA

IL_68574.2*
1/BA/1253:1260,
1/BA/1280:1284
Kink-turn
homologous
IL_7RQB_047
NA

IL_29549.9*
1/BA/1264:1266,
1/BA/1275:1276
Single bulged A
homologous
IL_7RQB_048
NA

IL_80007.16*
1/BA/1356:1359,
1/BA/1649:1650
Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA

IL_70995.6*
1/BA/1365:1369,
1/BA/1377:1379
C-loop
homologous
IL_7RQB_051
NA

IL_63596.4*
1/BA/1397:1401,
1/BA/1422:1426
UAA/GAN
homologous
IL_7RQB_052
NA

IL_53523.5*
1/BA/1403:1407,
1/BA/1416:1420
tSH-tHW-tHS
homologous
IL_7RQB_053
NA

IL_39521.5*
1/BA/1461:1462,
1/BA/1629:1633

homologous
IL_7RQB_054
NA

IL_67474.3*
1/BA/1463:1467,
1/BA/1624:1628
UAA/GAN
homologous
IL_7RQB_055
NA

IL_53523.5*
1/BA/1479:1481,
1/BA/1604:1607
Isolated tWW turn
homologous
IL_7RQB_056
NA

IL_54997.5*
1/BA/1483:1486,
1/BA/1598:1602
tSH-tHW
homologous
IL_7RQB_057
NA

IL_08757.3*
1/BA/1495:1497,
1/BA/1509:1510
Single stack bend
homologous
IL_7RQB_058
NA

IL_31836.1*
1/BA/1498:1499,
1/BA/1506:1508
Single bulged A
geometric
IL_7RQB_059
NA

IL_80007.16*
1/BA/1516:1520,
1/BA/1566:1569
UAA/GAN
homologous
IL_7RQB_060
NA

IL_53523.5*
1/BA/1528:1529,
1/BA/1552:1558

homologous
IL_7RQB_061
NA

IL_46464.1*
1/BA/1535:1537,
1/BA/1545:1546
Single bulged A
homologous
IL_7RQB_062
NA

IL_40508.4*
1/BA/1698:1703,
1/BA/2026:2028

homologous
IL_7RQB_064
NA

IL_12566.2*
1/BA/1710:1712,
1/BA/2017:2019
Isolated tWW turn
homologous
IL_7RQB_065
NA

IL_54997.5*
1/BA/1716:1721,
1/BA/2012:2015
Intercalated tWH
geometric
IL_7RQB_067
NA

IL_01312.13*
1/BA/1733:1738,
1/BA/1743:1749
tSH-tSH-tHH-tHS
homologous
IL_7RQB_068
NA

IL_66584.5*
1/BA/1801:1802,
1/BA/2002:2004
Single bulged A
homologous
IL_7RQB_069
NA

IL_80007.16*
1/BA/1829:1835,
1/BA/1844:1852
Kink-turn related
homologous
IL_7RQB_070
NA

IL_17069.3*
1/BA/1868:1871,
1/BA/1924:1925
Major groove outside cWW, minor groove, intercalation pocket
homologous
IL_7RQB_071
NA

IL_31836.1*
1/BA/1872:1873,
1/BA/1920:1923
Major groove outside cWW, minor groove, intercalation pocket
homologous
IL_7RQB_072
NA

IL_13730.12*
1/BA/1877:1880,
1/BA/1915:1916
Minor groove platform
homologous
IL_7RQB_073
NA

IL_06437.11*
1/BA/1882:1886,
1/BA/1909:1913
UAA/GAN with extra pair
homologous
IL_7RQB_074
NA

IL_34907.2*
1/BA/1887:1891,
1/BA/1904:1908
Triple sheared
homologous
IL_7RQB_075
NA

IL_56467.6*
1/BA/1955:1956,
1/BA/1986:1989
Multiple bulged bases
geometric
IL_7RQB_076
NA

IL_69632.1*
1/BA/1956:1967,
1/BA/1983:1986

geometric
IL_4WF9_077
NA

IL_70285.1*
1/BA/2076:2079,
1/BA/2623:2627

homologous
IL_7RQB_079
NA

IL_01206.1*
1/BA/2089:2091,
1/BA/2454:2455
Single bulged U
homologous
IL_7RQB_080
NA

IL_83039.11*
1/BA/2103:2105,
1/BA/2248:2251
Isolated tHS basepair with bulges
homologous
IL_7RQB_082
NA

IL_38958.6*
1/BA/2107:2109,
1/BA/2244:2246

homologous
IL_7RQB_083
NA

IL_01312.13*
1/BA/2309:2311,
1/BA/2329:2333
Isolated tHS basepair with bulges
homologous
IL_7RQB_088
NA

IL_38958.6*
1/BA/2362:2365,
1/BA/2376:2379
Double sheared
homologous
IL_7RQB_089
NA

IL_09705.7*
1/BA/2413:2415,
1/BA/2426:2427
Major groove platform
homologous
IL_7RQB_090
NA

IL_80663.10*
1/BA/2471:2473,
1/BA/2501:2505
Major groove minor groove platform with extra cWW
homologous
IL_7RQB_094
NA

IL_96042.4*
1/BA/2478:2482,
1/BA/2492:2496
Triple sheared
homologous
IL_7RQB_095
NA

IL_56467.6*
1/BA/2522:2524,
1/BA/2586:2590
Isolated non-canonical cWW with bulges
geometric
IL_7RQB_097
NA

IL_01312.13*
1/BA/2524:2525,
1/BA/2583:2586
Multiple bulged bases
homologous
IL_7RQB_098
NA

IL_13730.12*
1/BA/2648:2652,
1/BA/2787:2795
tSH-tHS-tHW
homologous
IL_7RQB_102
NA

IL_34907.2*
1/BA/2664:2670,
1/BA/2675:2680
Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_7RQB_103
NA

IL_35110.5*
1/BA/2692:2696,
1/BA/2738:2740
C-loop
homologous
IL_7RQB_104
NA

IL_63596.4*
1/BA/2699:2703,
1/BA/2731:2735

homologous
IL_7RQB_105
NA

IL_08296.3*
1/BA/2707:2708,
1/BA/2723:2727
Multiple bulged bases
homologous
IL_7RQB_106
NA

IL_77034.1*
1/BA/2750:2755,
1/BA/2775:2780
UAA/GAN with extra cWW
geometric
IL_5J7L_350
NA

IL_49767.4*
1/BA/2848:2849,
1/BA/2888:2890
Single bulged C
homologous
IL_7RQB_108
NA

IL_61258.10*
1/BA/2853:2856,
1/BA/2880:2884

homologous
IL_7RQB_109
NA

IL_58764.1*
1/BA/2857:2862,
1/BA/2875:2879

homologous
IL_7RQB_110
NA

IL_83162.3*
1/BB/17:18,
1/BB/65:67
Major groove intercalation
geometric
IL_7RQB_111
NA

IL_80007.16*
1/BB/23:28,
1/BB/56:60

geometric
IL_5J7L_356
NA

IL_18472.1*
1/BB/30:32,
1/BB/50:54

geometric
IL_4WF9_114
NA

IL_45289.1*
1/BB/34:38,
1/BB/44:48
Symmetric double minor groove platform
homologous
IL_5TBW_376
NA

IL_58103.5*
1/BB/71:79,
1/BB/98:106
Bacterial 5S Loop E
geometric
IL_7RQB_115
NA

IL_56455.3*
1/CA/30:32,
1/CA/552:553
NANA
1/CA/44:45,
1/CA/396:398
NANA
1/CA/47:52,
1/CA/359:361
NANA
1/CA/54:56,
1/CA/356:357
NANA
1/CA/63:66,
1/CA/103:104
NANA
1/CA/67:69,
1/CA/100:102
NANA