4WQY Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4WQY_001 | 1/AA/58:67 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_29414.1 | |
| HL_4WQY_002 | 1/AA/86:94 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_17926.5 | |
| HL_4WQY_003 | 1/AA/121:126 | No text annotation Not in a motif group | homologous HL_7RQB_003 HL_62869.3 | |
| HL_4WQY_004 | 1/AA/136:141 | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_86069.1 | |
| HL_4WQY_005 | 1/AA/183:190 | No text annotation Not in a motif group | geometric HL_7RQB_006 HL_23481.5 | |
| HL_4WQY_006 | 1/AA/214:219 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_06569.2 | |
| HL_4WQY_007 | 1/AA/235:241 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.5 | |
| HL_4WQY_008 | 1/AA/269:275 | No text annotation Not in a motif group | geometric HL_5J7L_018 HL_93229.1 | |
| HL_4WQY_009 | 1/AA/329:336 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_68493.6 | |
| HL_4WQY_010 | 1/AA/343:347 | No text annotation Not in a motif group | homologous HL_7RQB_011 HL_98557.5 | |
| HL_4WQY_011 | 1/AA/351:359 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.6 | |
| HL_4WQY_012 | 1/AA/409:419 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.3 | |
| HL_4WQY_013 | 1/AA/437:444 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_32512.8 | |
| HL_4WQY_014 | 1/AA/488:493 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_43074.18 | |
| HL_4WQY_015 | 1/AA/513:518 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_43074.18 | |
| HL_4WQY_017 | 1/AA/589:598 | No text annotation Not in a motif group | geometric HL_7RQB_018 HL_33239.17 | |
| HL_4WQY_018 | 1/AA/635:641 | No text annotation Not in a motif group | homologous HL_7RQB_019 HL_49196.4 | |
| HL_4WQY_019 | 1/AA/654:659 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_43074.18 | |
| HL_4WQY_020 | 1/AA/666:672 | GNRA with one bulged base Not in a motif group | homologous HL_4WF9_021 HL_02361.6 | |
| HL_4WQY_021 | 1/AA/759:766 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_93727.5 | |
| HL_4WQY_022 | 1/AA/791:800 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.5 | |
| HL_4WQY_023 | 1/AA/826:832 | No text annotation Not in a motif group | homologous HL_7RQB_024 HL_16898.3 | |
| HL_4WQY_024 | 1/AA/873:878 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_15942.5 | |
| HL_4WQY_026 | 1/AA/1000:1007 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_43074.18 | |
| HL_4WQY_027 | 1/AA/1024:1031 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_72451.5 | |
| HL_4WQY_028 | 1/AA/1110:1120 | No text annotation Not in a motif group | homologous HL_1MMS_001 HL_92304.3 | |
| HL_4WQY_029 | 1/AA/1138:1145 | No text annotation Not in a motif group | homologous HL_6PRV_002 HL_93727.5 | |
| HL_4WQY_030 | 1/AA/1217:1223 | No text annotation Not in a motif group | homologous HL_7RQB_031 HL_01253.1 | |
| HL_4WQY_031 | 1/AA/1268:1273 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_43074.18 | |
| HL_4WQY_032 | 1/AA/1327:1335 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_33239.17 | |
| HL_4WQY_033 | 1/AA/1370:1376 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_86880.5 | |
| HL_4WQY_034 | 1/AA/1409:1414 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_43074.18 | |
| HL_4WQY_035 | 1/AA/1435:1444 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_78457.4 | |
| HL_4WQY_036 | 1/AA/1499:1506 | No text annotation Not in a motif group | geometric HL_7RQB_037 HL_71540.1 | |
| HL_4WQY_037 | 1/AA/1538:1544 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_86880.5 | |
| HL_4WQY_039 | 1/AA/1612:1615 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_69353.7 | |
| HL_4WQY_040 | 1/AA/1658:1665 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_66171.3 | |
| HL_4WQY_041 | 1/AA/1677:1682 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_86880.5 | |
| HL_4WQY_042 | 1/AA/1738:1743 | No text annotation Not in a motif group | homologous HL_7RQB_042 HL_79299.11 | |
| HL_4WQY_043 | 1/AA/1765:1771 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_49638.1 | |
| HL_4WQY_044 | 1/AA/1783:1787 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_79272.3 | |
| HL_4WQY_045 | 1/AA/1808:1818 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.4 | |
| HL_4WQY_046 | 1/AA/1837:1842 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_43074.18 | |
| HL_4WQY_047 | 1/AA/1895:1900 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_43074.18 | |
| HL_4WQY_048 | 1/AA/1932:1942 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_98248.1 | |
| HL_4WQY_049 | 1/AA/1971:1979 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_53760.4 | |
| HL_4WQY_050 | 1/AA/2049:2058 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.5 | |
| HL_4WQY_052 | 1/AA/2226:2231 | No text annotation Not in a motif group | homologous HL_7RQB_052 HL_82131.1 | |
| HL_4WQY_053 | 1/AA/2260:2268 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_4WQY_054 | 1/AA/2276:2288 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.5 | |
| HL_4WQY_055 | 1/AA/2315:2325 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_4WQY_056 | 1/AA/2336:2343 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_46142.8 | |
| HL_4WQY_057 | 1/AA/2367:2374 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_93727.5 | |
| HL_4WQY_058 | 1/AA/2386:2391 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_43074.18 | |
| HL_4WQY_059 | 1/AA/2416:2425 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_48376.4 | |
| HL_4WQY_060 | 1/AA/2483:2491 | No text annotation Not in a motif group | homologous HL_7RQB_060 HL_36421.5 | |
| HL_4WQY_061 | 1/AA/2540:2547 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_92681.5 | |
| HL_4WQY_062 | 1/AA/2563:2569 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_26055.6 | |
| HL_4WQY_063 | 1/AA/2606:2611 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_43074.18 | |
| HL_4WQY_064 | 1/AA/2670:2675 | No text annotation Not in a motif group | homologous HL_7RQB_064 HL_43074.18 | |
| HL_4WQY_065 | 1/AA/2713:2718 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_31583.1 | |
| HL_4WQY_066 | 1/AA/2758:2772 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.5 | |
| HL_4WQY_068 | 1/AA/2829:2837 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_05018.6 | |
| HL_4WQY_069 | 1/AA/2866:2871 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_43074.18 | |
| HL_4WQY_070 | 1/AB/38:44 | No text annotation Not in a motif group | geometric HL_7RQB_070 HL_02733.5 | |
| HL_4WQY_071 | 1/AB/86:91 | No text annotation Not in a motif group | homologous HL_7RQB_071 HL_43074.18 | |
| HL_4WQY_072 | 1/BA/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_67265.4 | |
| HL_4WQY_075 | 1/BA/189C:189H | No text annotation Not in a motif group | homologous HL_6CZR_075 HL_44730.2 | |
| HL_4WQY_077 | 1/BA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_93727.5 | |
| HL_4WQY_078 | 1/BA/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_43074.18 | |
| HL_4WQY_079 | 1/BA/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_4WQY_081 | 1/BA/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_43074.18 | |
| HL_4WQY_082 | 1/BA/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_79299.11 | |
| HL_4WQY_083 | 1/BA/458:473 | No text annotation Not in a motif group | homologous HL_6CZR_083 HL_68304.6 | |
| HL_4WQY_084 | 1/BA/522:527 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_98557.5 | |
| HL_4WQY_085 | 1/BA/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26055.6 | |
| HL_4WQY_086 | 1/BA/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_87219.4 | |
| HL_4WQY_087 | 1/BA/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_43074.18 | |
| HL_4WQY_088 | 1/BA/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_87219.4 | |
| HL_4WQY_089 | 1/BA/838:848 | No text annotation Not in a motif group | homologous HL_6CZR_089 HL_18722.3 | |
| HL_4WQY_090 | 1/BA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_43074.18 | |
| HL_4WQY_091 | 1/BA/897:902 | GNRA Not in a motif group | homologous HL_5J7L_020 HL_43074.18 | |
| HL_4WQY_092 | 1/BA/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_4WQY_093 | 1/BA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_43074.18 | |
| HL_4WQY_095 | 1/BA/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_43074.18 | |
| HL_4WQY_096 | 1/BA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_54035.7 | |
| HL_4WQY_098 | 1/BA/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_43074.18 | |
| HL_4WQY_099 | 1/BA/1265:1270 | No text annotation Not in a motif group | homologous HL_6CZR_099 NA | |
| HL_4WQY_100 | 1/BA/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_78061.2 | |
| HL_4WQY_101 | 1/BA/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_70505.1 | |
| HL_4WQY_102 | 1/BA/1445:1457 | No text annotation Not in a motif group | homologous HL_6CZR_102 HL_16568.1 | |
| HL_4WQY_103 | 1/BA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_4WQY_104 | 1/BX/13:22 | No text annotation Not in a motif group | homologous HL_6CFJ_106 HL_51876.1 | |
| HL_4WQY_105 | 1/BX/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4TUE_034 HL_97724.2 | |
| HL_4WQY_106 | 1/BX/53:61 | No text annotation Not in a motif group | homologous HL_6CFJ_108 NA | |
| HL_4WQY_107 | 1/CA/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_29414.1 | |
| HL_4WQY_108 | 1/CA/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_17926.5 | |
| HL_4WQY_109 | 1/CA/123:128 | No text annotation Not in a motif group | homologous HL_7RQB_003 HL_62869.3 | |
| HL_4WQY_110 | 1/CA/139:142A | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_86069.1 | |
| HL_4WQY_112 | 1/CA/194:201 | No text annotation Not in a motif group | homologous HL_7RQB_006 HL_23481.5 | |
| HL_4WQY_113 | 1/CA/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_06569.2 | |
| HL_4WQY_114 | 1/CA/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.5 | |
| HL_4WQY_115 | 1/CA/271I:271O | No text annotation Not in a motif group | geometric HL_5J7L_018 HL_93229.1 | |
| HL_4WQY_116 | 1/CA/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_68493.6 | |
| HL_4WQY_117 | 1/CA/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_98557.5 | |
| HL_4WQY_118 | 1/CA/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.6 | |
| HL_4WQY_119 | 1/CA/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.3 | |
| HL_4WQY_120 | 1/CA/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_32512.8 | |
| HL_4WQY_121 | 1/CA/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_43074.18 | |
| HL_4WQY_122 | 1/CA/487:493 | GNRA Not in a motif group | homologous HL_4WF9_016 HL_43074.18 | |
| HL_4WQY_124 | 1/CA/566:575 | No text annotation Not in a motif group | geometric HL_7RQB_018 HL_33239.17 | |
| HL_4WQY_125 | 1/CA/612:615 | No text annotation Not in a motif group | homologous HL_7RQB_019 HL_49196.4 | |
| HL_4WQY_126 | 1/CA/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_43074.18 | |
| HL_4WQY_127 | 1/CA/641:647 | GNRA with one bulged base Not in a motif group | homologous HL_4WF9_021 HL_02361.6 | |
| HL_4WQY_129 | 1/CA/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_93727.5 | |
| HL_4WQY_130 | 1/CA/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.5 | |
| HL_4WQY_131 | 1/CA/779:785 | No text annotation Not in a motif group | homologous HL_7RQB_024 HL_16898.3 | |
| HL_4WQY_132 | 1/CA/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_15942.5 | |
| HL_4WQY_134 | 1/CA/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_43074.18 | |
| HL_4WQY_135 | 1/CA/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_72451.5 | |
| HL_4WQY_137 | 1/CA/1091:1100 | No text annotation Not in a motif group | ||
| HL_4WQY_139 | 1/CA/1222:1227 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_43074.18 | |
| HL_4WQY_140 | 1/CA/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_33239.17 | |
| HL_4WQY_141 | 1/CA/1324:1330 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_86880.5 | |
| HL_4WQY_142 | 1/CA/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_43074.18 | |
| HL_4WQY_143 | 1/CA/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_78457.4 | |
| HL_4WQY_144 | 1/CA/1451:1459 | No text annotation Not in a motif group | homologous HL_7RQB_037 HL_71540.1 | |
| HL_4WQY_145 | 1/CA/1492:1498 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_86880.5 | |
| HL_4WQY_147 | 1/CA/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_69353.7 | |
| HL_4WQY_148 | 1/CA/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_66171.3 | |
| HL_4WQY_149 | 1/CA/1631:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_86880.5 | |
| HL_4WQY_150 | 1/CA/1691:1696 | No text annotation Not in a motif group | geometric HL_7RQB_042 HL_79299.11 | |
| HL_4WQY_151 | 1/CA/1720:1742 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_49638.1 | |
| HL_4WQY_152 | 1/CA/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_79272.3 | |
| HL_4WQY_153 | 1/CA/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.4 | |
| HL_4WQY_154 | 1/CA/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_43074.18 | |
| HL_4WQY_155 | 1/CA/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_43074.18 | |
| HL_4WQY_156 | 1/CA/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_98248.1 | |
| HL_4WQY_157 | 1/CA/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_53760.4 | |
| HL_4WQY_158 | 1/CA/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.5 | |
| HL_4WQY_160 | 1/CA/2205:2219 | No text annotation Not in a motif group | homologous HL_7RQB_052 HL_82131.1 | |
| HL_4WQY_161 | 1/CA/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_4WQY_162 | 1/CA/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.5 | |
| HL_4WQY_163 | 1/CA/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_4WQY_164 | 1/CA/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_46142.8 | |
| HL_4WQY_165 | 1/CA/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_93727.5 | |
| HL_4WQY_166 | 1/CA/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_43074.18 | |
| HL_4WQY_167 | 1/CA/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_48376.4 | |
| HL_4WQY_168 | 1/CA/2471:2479 | No text annotation Not in a motif group | homologous HL_7RQB_060 HL_36421.5 | |
| HL_4WQY_169 | 1/CA/2527:2536 | tRNA anticodon loop Not in a motif group | geometric HL_3W3S_002 HL_97724.2 | |
| HL_4WQY_170 | 1/CA/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_26055.6 | |
| HL_4WQY_171 | 1/CA/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_43074.18 | |
| HL_4WQY_172 | 1/CA/2658:2663 | No text annotation Not in a motif group | homologous HL_7RQB_064 HL_43074.18 | |
| HL_4WQY_173 | 1/CA/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_31583.1 | |
| HL_4WQY_174 | 1/CA/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.5 | |
| HL_4WQY_176 | 1/CA/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_05018.6 | |
| HL_4WQY_177 | 1/CA/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_43074.18 | |
| HL_4WQY_178 | 1/CB/38:44 | No text annotation Not in a motif group | geometric HL_1MJI_002 HL_02733.5 | |
| HL_4WQY_179 | 1/CB/86:91 | No text annotation Not in a motif group | homologous HL_7RQB_071 HL_43074.18 | |
| HL_4WQY_180 | 1/DA/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_67265.4 | |
| HL_4WQY_183 | 1/DA/189C:189H | No text annotation Not in a motif group | homologous HL_4LFB_004 HL_44730.2 | |
| HL_4WQY_185 | 1/DA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_93727.5 | |
| HL_4WQY_186 | 1/DA/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_43074.18 | |
| HL_4WQY_187 | 1/DA/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_4WQY_188 | 1/DA/342:347 | UNCG Not in a motif group | homologous HL_5J7L_009 HL_79299.11 | |
| HL_4WQY_189 | 1/DA/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_43074.18 | |
| HL_4WQY_190 | 1/DA/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_79299.11 | |
| HL_4WQY_191 | 1/DA/458:473 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_68304.6 | |
| HL_4WQY_192 | 1/DA/522:527 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_62869.3 | |
| HL_4WQY_193 | 1/DA/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26055.6 | |
| HL_4WQY_194 | 1/DA/689:698 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_87219.4 | |
| HL_4WQY_195 | 1/DA/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_43074.18 | |
| HL_4WQY_196 | 1/DA/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_87219.4 | |
| HL_4WQY_197 | 1/DA/837:849 | No text annotation Not in a motif group | homologous HL_5J7L_018 HL_93229.1 | |
| HL_4WQY_198 | 1/DA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_43074.18 | |
| HL_4WQY_199 | 1/DA/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_43074.18 | |
| HL_4WQY_200 | 1/DA/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_4WQY_203 | 1/DA/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_43074.18 | |
| HL_4WQY_204 | 1/DA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_54035.7 | |
| HL_4WQY_208 | 1/DA/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_78061.2 | |
| HL_4WQY_209 | 1/DA/1356:1366 | No text annotation Not in a motif group | ||
| HL_4WQY_210 | 1/DA/1445:1457 | No text annotation Not in a motif group | homologous HL_6CZR_102 HL_16568.1 | |
| HL_4WQY_211 | 1/DA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_4WQY_213 | 1/DX/31:39 | No text annotation Not in a motif group | homologous HL_6CFJ_107 NA | |
| HL_4WQY_214 | 1/DX/53:61 | No text annotation Not in a motif group | homologous HL_6CFJ_108 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4WQY_016 | No text annotation | ||
| HL_4WQY_025 | No text annotation | ||
| HL_4WQY_038 | No text annotation | ||
| HL_4WQY_051 | No text annotation | ||
| HL_4WQY_067 | No text annotation | ||
| HL_4WQY_073 | No text annotation | ||
| HL_4WQY_074 | No text annotation | ||
| HL_4WQY_076 | No text annotation | ||
| HL_4WQY_080 | No text annotation | ||
| HL_4WQY_094 | No text annotation | ||
| HL_4WQY_097 | No text annotation | ||
| HL_4WQY_111 | No text annotation | ||
| HL_4WQY_123 | No text annotation | ||
| HL_4WQY_128 | No text annotation | ||
| HL_4WQY_133 | No text annotation | ||
| HL_4WQY_136 | No text annotation | ||
| HL_4WQY_138 | No text annotation | ||
| HL_4WQY_146 | No text annotation | ||
| HL_4WQY_159 | No text annotation | ||
| HL_4WQY_175 | No text annotation | ||
| HL_4WQY_181 | No text annotation | ||
| HL_4WQY_182 | GNRA | ||
| HL_4WQY_184 | No text annotation | ||
| HL_4WQY_201 | No text annotation | ||
| HL_4WQY_202 | No text annotation | ||
| HL_4WQY_205 | No text annotation | ||
| HL_4WQY_206 | GNRA | ||
| HL_4WQY_207 | GNRA | ||
| HL_4WQY_212 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4WQY_001 | 1/AA/24:30, 1/AA/535:541 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 IL_66414.5 | |
| IL_4WQY_002 | 1/AA/36:37, 1/AA/468:470 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_80007.16 | |
| IL_4WQY_003 | 1/AA/42:43, 1/AA/461:463 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 IL_06437.11 | |
| IL_4WQY_004 | 1/AA/80:84, 1/AA/96:103 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_29549.9 | |
| IL_4WQY_005 | 1/AA/172:173, 1/AA/201:203 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_04038.4 | |
| IL_4WQY_006 | 1/AA/177:183, 1/AA/190:197 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 IL_04346.5 | |
| IL_4WQY_007 | 1/AA/228:234, 1/AA/242:247 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_35110.5 | |
| IL_4WQY_008 | 1/AA/291:292, 1/AA/392:394 | Major groove platform Not in a motif group | homologous IL_7RQB_009 IL_13730.12 | |
| IL_4WQY_010 | 1/AA/304:308, 1/AA/381:384 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 IL_08757.3 | |
| IL_4WQY_011 | 1/AA/312:314, 1/AA/374:377 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 IL_38958.6 | |
| IL_4WQY_012 | 1/AA/317:319, 1/AA/367:371 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_4WQY_013 | 1/AA/507:510, 1/AA/521:534 | No text annotation Not in a motif group | homologous IL_7RQB_014 IL_60992.5 | |
| IL_4WQY_014 | 1/AA/587:589, 1/AA/598:600 | No text annotation Not in a motif group | homologous IL_7RQB_015 IL_01312.13 | |
| IL_4WQY_015 | 1/AA/629:633, 1/AA/643:647 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 IL_56467.6 | |
| IL_4WQY_016 | 1/AA/719:721, 1/AA/853:855 | No text annotation Not in a motif group | geometric IL_7RQB_017 IL_01312.13 | |
| IL_4WQY_017 | 1/AA/721:725, 1/AA/846:853 | No text annotation Not in a motif group | homologous IL_7RQB_018 IL_17470.5 | |
| IL_4WQY_018 | 1/AA/744:745, 1/AA/810:812 | Single bulged A Not in a motif group | homologous IL_7RQB_019 IL_80007.16 | |
| IL_4WQY_019 | 1/AA/749:750, 1/AA/775:777 | Single bulged G Not in a motif group | homologous IL_7RQB_020 IL_59137.10 | |
| IL_4WQY_020 | 1/AA/750:754, 1/AA/771:775 | Triple sheared Not in a motif group | geometric IL_7RQB_021 IL_56467.6 | |
| IL_4WQY_021 | 1/AA/785:788, 1/AA/803:805 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_95485.6 | |
| IL_4WQY_022 | 1/AA/822:824, 1/AA/834:838 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_023 IL_90991.5 | |
| IL_4WQY_023 | 1/AA/884:885, 1/AA/985:987 | Single stack bend Not in a motif group | homologous IL_7RQB_024 IL_04038.4 | |
| IL_4WQY_024 | 1/AA/891:893, 1/AA/976:979 | Intercalated cWW Not in a motif group | homologous IL_7RQB_025 IL_01312.13 | |
| IL_4WQY_025 | 1/AA/893:897, 1/AA/973:976 | No text annotation Not in a motif group | geometric IL_7RQB_026 IL_94165.1 | |
| IL_4WQY_026 | 1/AA/905:909, 1/AA/961:965 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_7RQB_027 IL_83354.1 | |
| IL_4WQY_027 | 1/AA/909:910, 1/AA/959:961 | Minor groove platform Not in a motif group | geometric IL_7RQB_028 IL_06437.11 | |
| IL_4WQY_028 | 1/AA/911:915, 1/AA/955:958 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_63596.4 | |
| IL_4WQY_029 | 1/AA/917:919, 1/AA/951:953 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_030 IL_67621.5 | |
| IL_4WQY_030 | 1/AA/922:924, 1/AA/945:948 | Minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_031 IL_87332.1 | |
| IL_4WQY_031 | 1/AA/924:926, 1/AA/944:945 | Minor groove platform Not in a motif group | geometric IL_7RQB_032 IL_06437.11 | |
| IL_4WQY_032 | 1/AA/926:930, 1/AA/939:944 | No text annotation Not in a motif group | ||
| IL_4WQY_033 | 1/AA/997:999, 1/AA/1008:1010 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_01312.13 | |
| IL_4WQY_034 | 1/AA/1040:1042, 1/AA/1205:1206 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.10 | |
| IL_4WQY_035 | 1/AA/1044:1048, 1/AA/1199:1203 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 IL_53523.5 | |
| IL_4WQY_036 | 1/AA/1050:1057, 1/AA/1196:1197 | SSU/LSU pseudoknot Not in a motif group | geometric IL_7RQB_037 IL_15861.6 | |
| IL_4WQY_037 | 1/AA/1057:1059, 1/AA/1195:1196 | Single bulged U Not in a motif group | homologous IL_7RQB_038 IL_83039.11 | |
| IL_4WQY_038 | 1/AA/1064:1070, 1/AA/1185:1190 | No text annotation Not in a motif group | homologous IL_4WF9_039 IL_57188.3 | |
| IL_4WQY_040 | 1/AA/1089:1098, 1/AA/1153:1158 | No text annotation Not in a motif group | ||
| IL_4WQY_042 | 1/AA/1105:1108, 1/AA/1122:1125 | No text annotation Not in a motif group | homologous IL_1MMS_001 IL_23544.2 | |
| IL_4WQY_043 | 1/AA/1133:1137, 1/AA/1146:1148 | Major groove platform with extra cWW Not in a motif group | homologous IL_1MMS_002 IL_95485.6 | |
| IL_4WQY_044 | 1/AA/1241:1243, 1/AA/1293:1296 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 IL_67621.5 | |
| IL_4WQY_045 | 1/AA/1247:1251, 1/AA/1286:1289 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
| IL_4WQY_046 | 1/AA/1253:1260, 1/AA/1280:1284 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_29549.9 | |
| IL_4WQY_047 | 1/AA/1264:1266, 1/AA/1275:1276 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_80007.16 | |
| IL_4WQY_048 | 1/AA/1308:1315, 1/AA/2033:2039 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.5 | |
| IL_4WQY_049 | 1/AA/1356:1359, 1/AA/1649:1650 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_70995.6 | |
| IL_4WQY_050 | 1/AA/1365:1369, 1/AA/1377:1379 | C-loop Not in a motif group | homologous IL_7RQB_051 IL_63596.4 | |
| IL_4WQY_051 | 1/AA/1397:1401, 1/AA/1422:1426 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_53523.5 | |
| IL_4WQY_052 | 1/AA/1403:1407, 1/AA/1416:1420 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 IL_39521.5 | |
| IL_4WQY_053 | 1/AA/1461:1462, 1/AA/1629:1633 | No text annotation Not in a motif group | homologous IL_7RQB_054 IL_67474.3 | |
| IL_4WQY_054 | 1/AA/1463:1467, 1/AA/1624:1628 | UAA/GAN Not in a motif group | homologous IL_7RQB_055 IL_53523.5 | |
| IL_4WQY_055 | 1/AA/1479:1481, 1/AA/1604:1607 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 IL_54997.5 | |
| IL_4WQY_056 | 1/AA/1483:1486, 1/AA/1598:1602 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_08757.3 | |
| IL_4WQY_057 | 1/AA/1495:1497, 1/AA/1509:1510 | Single stack bend Not in a motif group | homologous IL_7RQB_058 IL_31836.1 | |
| IL_4WQY_058 | 1/AA/1498:1499, 1/AA/1506:1508 | Single bulged A Not in a motif group | homologous IL_7RQB_059 IL_80007.16 | |
| IL_4WQY_059 | 1/AA/1516:1520, 1/AA/1566:1569 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_53523.5 | |
| IL_4WQY_060 | 1/AA/1528:1529, 1/AA/1552:1558 | No text annotation Not in a motif group | homologous IL_7RQB_061 IL_46464.1 | |
| IL_4WQY_061 | 1/AA/1535:1537, 1/AA/1545:1546 | Single bulged A Not in a motif group | homologous IL_7RQB_062 IL_40508.4 | |
| IL_4WQY_062 | 1/AA/1572:1576, 1/AA/1587:1593 | No text annotation Not in a motif group | homologous IL_7RQB_063 IL_89836.1 | |
| IL_4WQY_063 | 1/AA/1698:1703, 1/AA/2026:2028 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_4WQY_064 | 1/AA/1710:1712, 1/AA/2017:2019 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 IL_54997.5 | |
| IL_4WQY_065 | 1/AA/1713:1716, 1/AA/2015:2016 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 IL_80663.10 | |
| IL_4WQY_066 | 1/AA/1716:1721, 1/AA/2012:2015 | Intercalated tWH Not in a motif group | geometric IL_7RQB_067 IL_01312.13 | |
| IL_4WQY_067 | 1/AA/1733:1738, 1/AA/1743:1749 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_7RQB_068 IL_66584.5 | |
| IL_4WQY_068 | 1/AA/1801:1802, 1/AA/2002:2004 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_80007.16 | |
| IL_4WQY_069 | 1/AA/1829:1835, 1/AA/1844:1852 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_4WQY_070 | 1/AA/1868:1871, 1/AA/1924:1925 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_06437.11 | |
| IL_4WQY_071 | 1/AA/1872:1873, 1/AA/1920:1923 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_072 IL_13730.12 | |
| IL_4WQY_072 | 1/AA/1877:1880, 1/AA/1915:1916 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_06437.11 | |
| IL_4WQY_073 | 1/AA/1882:1886, 1/AA/1909:1913 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_34907.2 | |
| IL_4WQY_074 | 1/AA/1887:1891, 1/AA/1904:1908 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.6 | |
| IL_4WQY_075 | 1/AA/1955:1956, 1/AA/1986:1989 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_076 IL_69632.1 | |
| IL_4WQY_076 | 1/AA/1956:1967, 1/AA/1983:1986 | No text annotation Not in a motif group | homologous IL_4WF9_077 IL_70285.1 | |
| IL_4WQY_077 | 1/AA/2072:2074, 1/AA/2629:2630 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_80663.10 | |
| IL_4WQY_078 | 1/AA/2076:2079, 1/AA/2623:2627 | No text annotation Not in a motif group | ||
| IL_4WQY_079 | 1/AA/2089:2091, 1/AA/2454:2455 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.11 | |
| IL_4WQY_080 | 1/AA/2092:2093, 1/AA/2450:2453 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_06437.11 | |
| IL_4WQY_081 | 1/AA/2103:2105, 1/AA/2248:2251 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.6 | |
| IL_4WQY_082 | 1/AA/2107:2109, 1/AA/2244:2246 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_01312.13 | |
| IL_4WQY_090 | 1/AA/2309:2311, 1/AA/2329:2333 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_088 IL_38958.6 | |
| IL_4WQY_091 | 1/AA/2362:2365, 1/AA/2376:2379 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.7 | |
| IL_4WQY_092 | 1/AA/2413:2415, 1/AA/2426:2427 | Major groove platform Not in a motif group | homologous IL_7RQB_090 IL_80663.10 | |
| IL_4WQY_093 | 1/AA/2465:2466, 1/AA/2510:2512 | Single stack bend Not in a motif group | geometric IL_7RQB_091 IL_04038.4 | |
| IL_4WQY_094 | 1/AA/2466:2467, 1/AA/2508:2510 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_80663.10 | |
| IL_4WQY_095 | 1/AA/2469:2471, 1/AA/2505:2506 | Major groove platform Not in a motif group | homologous IL_4WF9_091 IL_80663.10 | |
| IL_4WQY_096 | 1/AA/2471:2473, 1/AA/2501:2505 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_094 IL_96042.4 | |
| IL_4WQY_097 | 1/AA/2478:2482, 1/AA/2492:2496 | Triple sheared Not in a motif group | homologous IL_7RQB_095 IL_56467.6 | |
| IL_4WQY_098 | 1/AA/2519:2520, 1/AA/2592:2594 | Major groove platform Not in a motif group | homologous IL_7A0S_088 IL_02060.4 | |
| IL_4WQY_099 | 1/AA/2522:2524, 1/AA/2586:2590 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_097 IL_01312.13 | |
| IL_4WQY_100 | 1/AA/2524:2525, 1/AA/2583:2586 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_098 IL_13730.12 | |
| IL_4WQY_101 | 1/AA/2534:2535, 1/AA/2552:2555 | Minor groove platform with intercalation Not in a motif group | homologous IL_7RQB_099 IL_95601.1 | |
| IL_4WQY_102 | 1/AA/2603:2604, 1/AA/2613:2615 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_80007.16 | |
| IL_4WQY_103 | 1/AA/2648:2652, 1/AA/2787:2795 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_34907.2 | |
| IL_4WQY_104 | 1/AA/2664:2670, 1/AA/2675:2680 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7RQB_103 IL_35110.5 | |
| IL_4WQY_105 | 1/AA/2692:2696, 1/AA/2738:2740 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.4 | |
| IL_4WQY_106 | 1/AA/2699:2703, 1/AA/2731:2735 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_4WQY_107 | 1/AA/2707:2708, 1/AA/2723:2727 | Multiple bulged bases Not in a motif group | homologous IL_7A0S_097 IL_66450.1 | |
| IL_4WQY_108 | 1/AA/2750:2755, 1/AA/2775:2780 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 IL_49767.4 | |
| IL_4WQY_109 | 1/AA/2848:2849, 1/AA/2888:2890 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.10 | |
| IL_4WQY_110 | 1/AA/2853:2856, 1/AA/2880:2884 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.1 | |
| IL_4WQY_111 | 1/AA/2857:2862, 1/AA/2875:2879 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.3 | |
| IL_4WQY_112 | 1/AB/17:18, 1/AB/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_80007.16 | |
| IL_4WQY_113 | 1/AB/23:28, 1/AB/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_4WQY_114 | 1/AB/30:31, 1/AB/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7RQB_113 IL_09061.4 | |
| IL_4WQY_115 | 1/AB/34:38, 1/AB/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 IL_58103.5 | |
| IL_4WQY_116 | 1/AB/71:79, 1/AB/98:106 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
| IL_4WQY_117 | 1/BA/30:32, 1/BA/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_59137.10 | |