5D8B Summary
- Structure Title
- 5D8B Summary
- Authors
- Release Date
- 2015-10-14
- Experimental technique
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
- Chains
-
- 12 RNA chains from Thermus thermophilus, Escherichia coli, synthetic construct
- 98 other chains
- Compounds
- 50S ribosomal protein L2, 50S ribosomal protein L34, 50S ribosomal protein L6, 30S ribosomal protein S4, 5S ribosomal RNA, 50S ribosomal protein L3, 50S ribosomal protein L35, 50S ribosomal protein L9, 30S ribosomal protein S5, tRNA, 50S ribosomal protein L4, 30S ribosomal protein S2, 50S ribosomal protein L11, 30S ribosomal protein S6, 50S ribosomal protein L5, 30S ribosomal protein S3, 50S ribosomal protein L13, 30S ribosomal protein S7, 50S ribosomal protein L6, 30S ribosomal protein S4, 50S ribosomal protein L14, 30S ribosomal protein S8, tRNA, 50S ribosomal protein L9, 30S ribosomal protein S5, 50S ribosomal protein L15, 30S ribosomal protein S9, tRNA, 50S ribosomal protein L11, 30S ribosomal protein S6, 50S ribosomal protein L16, 30S ribosomal protein S10, mRNA, 50S ribosomal protein L13, 30S ribosomal protein S7, 50S ribosomal protein L17, 30S ribosomal protein S11, mRNA, 50S ribosomal protein L14, 30S ribosomal protein S8, 50S ribosomal protein L18, 30S ribosomal protein S12, 50S ribosomal protein L15, 30S ribosomal protein S9, 50S ribosomal protein L19, 30S ribosomal protein S13, 50S ribosomal protein L16, 30S ribosomal protein S10, 50S ribosomal protein L20, 30S ribosomal protein S14, 50S ribosomal protein L17, 30S ribosomal protein S11, 50S ribosomal protein L21, 30S ribosomal protein S15, 50S ribosomal protein L18, 30S ribosomal protein S12, 50S ribosomal protein L22, 30S ribosomal protein S16, 50S ribosomal protein L19, 30S ribosomal protein S13, 50S ribosomal protein L23, 30S ribosomal protein S17, 50S ribosomal protein L20, 30S ribosomal protein S14, 50S ribosomal protein L24, 30S ribosomal protein S18, 50S ribosomal protein L21, 30S ribosomal protein S15, 50S ribosomal protein L25, 30S ribosomal protein S19, 50S ribosomal protein L22, 30S ribosomal protein S16, 50S ribosomal protein L27, 30S ribosomal protein S20, 50S ribosomal protein L23, 30S ribosomal protein S17, 50S ribosomal protein L28, 30S ribosomal protein Thx, 50S ribosomal protein L24, 30S ribosomal protein S18, 50S ribosomal protein L29, 50S ribosomal protein L31, 50S ribosomal protein L25, 30S ribosomal protein S19, 50S ribosomal protein L30, 50S ribosomal protein L31, 50S ribosomal protein L27, 30S ribosomal protein S20, 50S ribosomal protein L32, 16S ribosomal RNA, 50S ribosomal protein L28, 30S ribosomal protein Thx, 50S ribosomal protein L33, 23S ribosomal RNA, 50S ribosomal protein L29, 50S ribosomal protein L2, 50S ribosomal protein L34, 5S ribosomal RNA, 50S ribosomal protein L30, 50S ribosomal protein L3, 50S ribosomal protein L35, tRNA, 50S ribosomal protein L32, 50S ribosomal protein L4, 30S ribosomal protein S2, 16S ribosomal RNA, 50S ribosomal protein L33, 50S ribosomal protein L5, 30S ribosomal protein S3, 23S ribosomal RNA
Pairwise Interactions
Interactions annotated by FR3D:- 3,815 base-pairs
- 9,670 base-stacking
- 4,193 base-phosphate
- 465 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 5D8B contains:- 373 internal loops from 0 motif groups
- 220 hairpin loops from 0 motif groups
- 32 three-way junctions
3D Redundancy
5D8B has chains which belong to the following equivalence classes in the current representative set:- NR_20.0_35542.115 (4)
- NR_20.0_65795.70 (2)
- NR_20.0_97519.63 (2)
- NR_20.0_42622.63 (2)
- NR_4.0_35542.115 (4)
- NR_4.0_65795.70 (2)
- NR_4.0_97519.63 (2)
- NR_4.0_42622.63 (2)
- NR_all_35542.115 (4)
- NR_all_65795.70 (2)
- NR_all_97519.63 (2)
- NR_all_42622.63 (2)
Similar structures
7RQB 4V8F 4P70 4V83 1VVJ 4L71 6UCQ 4V9Q 6B4V 4TUB 4V9K 4LSK 4V8A 4P70 4TUC 5VPO 4V5K 6N9E 5V8I 4V5J 7LH5 4V7L 4V7K 5DOX 4V83 5F8K 4V9A 4V7K 4V5K 4V7Y 4LFZ 6N1D 4V84 4V9L 4V9M 4V4J 4V84 4V63 4V9M 4XEJ 4V63 4V7W 6CZR 6B4V 6UCQ 4V9K 4V67 4P6F 4V9I 4L71 4LEL 4V5C 4LFZ 4V7X 4V7Y 4V51 4V5S 4WZO 4TUA 6ND6 7JQL 4V9I 4V87 6GSK 4P6F 4V8Q 4V51 5WIT 4LSK 7JQM 4TUC 4V5D 6XQE 5EL5 4V7J 4WT8 4V5C 4L47 1VY5 4V8H 4W2E 4V5Q 4V8E 4V8I 1VY7 5DOX 6N9F 5CZP 4TUE 4WRO 7AZS 4V97 4V9Q 4V6F 4V5L 4LT8 1VVJ 4V5E 4V97 5CZP 4V7L 6CZR 7LH5 4TUE 4TUD 1VY6 6XQE 6N9E 6N9F 4TUB 4V5D 4V8J 6OPE 6OXA 5J30 6NSH 6NSH 5UQ8 6OXI 6NWY 6NWY 8FOM 8FOM 6OXI 8FON 6OF6 6OF6 6NTA 5J3C 6OPE 5J30 6BZ6 6BZ6 6OJ2 6OJ2 6NUO 6OXA 6NUO 6GZQ 5ZLU 8FON 6OSI 6GZZ 6GZZ 6GZX 6GZX 5IMQ 4V42 4V68 5IMR 4V5N 4V5M 5A9Z 6OSI 6O3M 6BUW 6BUW 6NDK 6BZ7 6NDK 5UQ7 6BZ7 6BZ8 6BZ8 6Q95 5OT7 6O3M 5AA0 4V5G 4W29 4V4I 4V7Z 4V5A 4V8O 4V7Z 4V4R 4V4S 4V4T 4V4Z 4V4X 4V4Y 4V5A 4V7X 4V9L 4V7P 4V5G 4V7P 4XEJ 4LEL 4V67 6N1D 4V7W 4V8J 4W29 4V7M 4V4P 6GSJ 6GSL 6BOK 6BOK 6BOH 6BOH 5VPP 5VPP 6OTR 5J3C 6ORD 6NTA 6OTR 6GSL 4V8N 6GSJ 4V6A 4V8U 4V6A 4V8X 4V8U 4V9J 4V8N 4V9J 4V9N 4V9N 4V8X 6ORD 4V87 6XHY 5HCP 6FKR 4V9H 6ND5 6XHV 4W2I 7RQD 4V8D 4WQR 5WIS 4Z3S 5EL7 7MD7 5HD1 4WT1 4W2G 6XHW 5J4C 4Z8C 5J4B 6CFL 7U2I 5EL4 4V9R 7RQE 5EL6 4WQY 4WR6 4WSD 7U2H 5IB8 6XQD 7AZO 4WRA 6CFK 8CVL 5J4C 4V9S 6QNQ 4ZER 6O97 4W2H 6CAE 4Z8C 4LNT 1VY4 5HAU 4WPO 4V6G 7RQC 8CVJ 4V8B 5J8B 4V5J 5HAU 5FDV 7RQE 7U2H 5FDV 5IB7 4V8I 5FDU 5IBB 6XHX 5IB8 7RQ8 5W4K 5E81 4WQR 6CAE 5FDU 4Y4O 7U2J 4Y4O 5IBB 5HCQ 7RQB 4WPO 8EKB 5E81 5DFE 6CFL 4V95 5DFE 6OF1 6XHX 5J4B 6QNR 4LNT 6CFJ 4WQF 5IB7 5EL6 8EKB 4V8D 8CVK 4WQ1 5NDK 6CFK 4WQU 6XHY 4WSM 4WQ1 5NDK 4WSD 5HCR 7RQC 5EL7 4WSM 7U2J 4V8G 4WT8 4V9B 4V8C 7AZO 4W2F 4ZSN 4YZV 1VY6 5WIS 4LT8 4V8F 4WT1 4L47 4ZSN 6UO1 4V95 6C5L 8CVJ 7RQA 6O97 5VPO 4YZV 7RQ9 5HD1 6ND6 4V5R 8CVL 6GSK 4WQU 1VY4 4V90 4V5P 5HCP 4Y4P 4YPB 4V7J 4TUD 4W2H 6UO1 4V5E 4V5P 4V5S 5DOY 5F8K 4YPB 4V6G 4WQY 6XQD 4V5Q 7AZS 6QNQ 4TUA 4ZER 4V8C 4WRO 4V8B 4V9A 5HCQ 4V9B 7RQD 6FKR 5E7K 4WU1 5W4K 6XHW 1VY5 6QNR 7RQ9 4W2I 7JQM 5V8I 5NDJ 7RQA 6OF1 4WRA 6XHV 8CVK 1VY7 4W2F 6C5L 5WIT 4V7M 6CFJ 4V8H 4Y4P 5DOY 4V8E 7MD7 4WU1 4V9S 4V5R 5HCR 5NDJ 4V8A 4Z3S 4V9R 5EL4 7JQL 5E7K 4WR6 7U2I 4V5F 4W4G 4V8G 4W2G 4V5F 5EL5 4V6F 4W4G 4WZO 7RQ8 4WQF 6ND5Structures from NR_all_42622.63