5DOY Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5DOY_001 | 1/1A/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_5DOY_002 | 1/1A/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
| HL_5DOY_003 | 1/1A/123:128 | No text annotation Not in a motif group | homologous HL_7RQB_003 HL_75407.1 | |
| HL_5DOY_004 | 1/1A/139:142A | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_79921.2 | |
| HL_5DOY_006 | 1/1A/194:201 | No text annotation Not in a motif group | homologous HL_7RQB_006 HL_06192.2 | |
| HL_5DOY_007 | 1/1A/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_02862.2 | |
| HL_5DOY_008 | 1/1A/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_5DOY_009 | 1/1A/271I:271O | No text annotation Not in a motif group | geometric HL_5J7L_018 HL_34168.2 | |
| HL_5DOY_010 | 1/1A/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_89380.2 | |
| HL_5DOY_011 | 1/1A/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
| HL_5DOY_012 | 1/1A/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.8 | |
| HL_5DOY_013 | 1/1A/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
| HL_5DOY_014 | 1/1A/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_5DOY_015 | 1/1A/462:467 | GNRA Not in a motif group | homologous HL_5J7L_147 HL_42097.1 | |
| HL_5DOY_016 | 1/1A/487:493 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_42097.1 | |
| HL_5DOY_018 | 1/1A/566:575 | No text annotation Not in a motif group | geometric HL_7RQB_018 HL_89380.2 | |
| HL_5DOY_019 | 1/1A/612:615 | No text annotation Not in a motif group | homologous HL_7RQB_019 HL_32369.1 | |
| HL_5DOY_020 | 1/1A/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_42097.1 | |
| HL_5DOY_021 | 1/1A/641:647 | No text annotation Not in a motif group | homologous HL_7RQB_021 HL_42097.1 | |
| HL_5DOY_022 | 1/1A/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_5DOY_023 | 1/1A/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
| HL_5DOY_024 | 1/1A/779:785 | No text annotation Not in a motif group | homologous HL_7RQB_024 HL_74322.1 | |
| HL_5DOY_025 | 1/1A/826:831 | No text annotation Not in a motif group | homologous HL_4WF9_025 HL_64365.1 | |
| HL_5DOY_026 | 1/1A/881:895 | No text annotation Not in a motif group | ||
| HL_5DOY_027 | 1/1A/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.1 | |
| HL_5DOY_028 | 1/1A/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
| HL_5DOY_031 | 1/1A/1171:1178 | No text annotation Not in a motif group | homologous HL_7RQB_031 HL_94651.3 | |
| HL_5DOY_032 | 1/1A/1222:1227 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_42097.1 | |
| HL_5DOY_033 | 1/1A/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_89380.2 | |
| HL_5DOY_034 | 1/1A/1324:1330 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_46680.1 | |
| HL_5DOY_035 | 1/1A/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_87030.2 | |
| HL_5DOY_036 | 1/1A/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_69023.2 | |
| HL_5DOY_037 | 1/1A/1451:1459 | No text annotation Not in a motif group | homologous HL_7RQB_037 HL_32426.1 | |
| HL_5DOY_038 | 1/1A/1492:1498 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_46680.1 | |
| HL_5DOY_039 | 1/1A/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_38927.2 | |
| HL_5DOY_040 | 1/1A/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_5DOY_041 | 1/1A/1631:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.1 | |
| HL_5DOY_042 | 1/1A/1691:1696 | No text annotation Not in a motif group | geometric HL_7RQB_042 HL_03562.2 | |
| HL_5DOY_043 | 1/1A/1720:1742 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_43656.2 | |
| HL_5DOY_044 | 1/1A/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_5DOY_045 | 1/1A/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.5 | |
| HL_5DOY_046 | 1/1A/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_5DOY_047 | 1/1A/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_42097.1 | |
| HL_5DOY_048 | 1/1A/1909:1921 | No text annotation Not in a motif group | homologous HL_7RQB_048 NA | |
| HL_5DOY_049 | 1/1A/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_51824.1 | |
| HL_5DOY_050 | 1/1A/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_5DOY_052 | 1/1A/2205:2219 | No text annotation Not in a motif group | homologous HL_7RQB_052 HL_98426.1 | |
| HL_5DOY_053 | 1/1A/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_5DOY_054 | 1/1A/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_5DOY_055 | 1/1A/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_5DOY_056 | 1/1A/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_5DOY_057 | 1/1A/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_09136.1 | |
| HL_5DOY_058 | 1/1A/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_42097.1 | |
| HL_5DOY_059 | 1/1A/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_30784.2 | |
| HL_5DOY_060 | 1/1A/2471:2479 | No text annotation Not in a motif group | homologous HL_7RQB_060 HL_06192.2 | |
| HL_5DOY_061 | 1/1A/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_5DOY_062 | 1/1A/2551:2557 | No text annotation Not in a motif group | homologous HL_5J7L_195 NA | |
| HL_5DOY_063 | 1/1A/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_5DOY_064 | 1/1A/2658:2663 | No text annotation Not in a motif group | homologous HL_7RQB_064 HL_42097.1 | |
| HL_5DOY_065 | 1/1A/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
| HL_5DOY_066 | 1/1A/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_5DOY_068 | 1/1A/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
| HL_5DOY_069 | 1/1A/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 | |
| HL_5DOY_070 | 1/1B/38:44 | No text annotation Not in a motif group | homologous HL_7RQB_070 HL_87939.1 | |
| HL_5DOY_071 | 1/1B/86:91 | No text annotation Not in a motif group | homologous HL_7RQB_071 HL_42097.1 | |
| HL_5DOY_072 | 1/1a/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_5DOY_074 | 1/1a/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_42097.1 | |
| HL_5DOY_075 | 1/1a/189C:189H | No text annotation Not in a motif group | homologous HL_4LFB_004 HL_10278.1 | |
| HL_5DOY_076 | 1/1a/201:216 | No text annotation Not in a motif group | geometric HL_4V9F_021 HL_53837.1 | |
| HL_5DOY_077 | 1/1a/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_5DOY_078 | 1/1a/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_5DOY_079 | 1/1a/320:333 | No text annotation Not in a motif group | homologous HL_5J7L_008 HL_81205.2 | |
| HL_5DOY_081 | 1/1a/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.1 | |
| HL_5DOY_082 | 1/1a/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
| HL_5DOY_083 | 1/1a/458:473 | No text annotation Not in a motif group | homologous HL_6CZR_083 HL_43656.2 | |
| HL_5DOY_084 | 1/1a/521:528 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_5DOY_085 | 1/1a/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_5DOY_086 | 1/1a/689:698 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_12326.1 | |
| HL_5DOY_087 | 1/1a/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_5DOY_088 | 1/1a/786:796 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_12326.1 | |
| HL_5DOY_089 | 1/1a/838:848 | No text annotation Not in a motif group | homologous HL_6CZR_089 HL_53837.1 | |
| HL_5DOY_090 | 1/1a/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_5DOY_091 | 1/1a/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_5DOY_092 | 1/1a/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_5DOY_093 | 1/1a/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_5DOY_095 | 1/1a/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
| HL_5DOY_096 | 1/1a/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_5DOY_097 | 1/1a/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_5DOY_098 | 1/1a/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_5DOY_099 | 1/1a/1265:1270 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_42097.1 | |
| HL_5DOY_100 | 1/1a/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_5DOY_101 | 1/1a/1356:1366 | No text annotation Not in a motif group | ||
| HL_5DOY_102 | 1/1a/1445:1457 | No text annotation Not in a motif group | homologous HL_6CZR_102 HL_49722.1 | |
| HL_5DOY_103 | 1/1a/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_5DOY_105 | 1/1w/30:40 | No text annotation Not in a motif group | homologous HL_1B23_002 NA | |
| HL_5DOY_106 | 1/1w/53:61 | No text annotation Not in a motif group | homologous HL_3KFU_006 NA | |
| HL_5DOY_107 | 1/1x/13:22 | No text annotation Not in a motif group | homologous HL_6CFJ_106 HL_25462.2 | |
| HL_5DOY_108 | 1/1x/31:39 | No text annotation Not in a motif group | homologous HL_6CFJ_107 NA | |
| HL_5DOY_109 | 1/1x/53:61 | No text annotation Not in a motif group | homologous HL_6CFJ_108 NA | |
| HL_5DOY_111 | 1/1y/30:40 | No text annotation Not in a motif group | homologous HL_5EL4_222 NA | |
| HL_5DOY_112 | 1/1y/53:61 | No text annotation Not in a motif group | homologous HL_5L4O_003 NA | |
| HL_5DOY_113 | 1/2A/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_5DOY_114 | 1/2A/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
| HL_5DOY_115 | 1/2A/123:128 | No text annotation Not in a motif group | homologous HL_7RQB_003 HL_75407.1 | |
| HL_5DOY_116 | 1/2A/139:142A | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_79921.2 | |
| HL_5DOY_118 | 1/2A/194:201 | No text annotation Not in a motif group | homologous HL_5J7L_139 HL_06192.2 | |
| HL_5DOY_119 | 1/2A/225:230 | No text annotation Not in a motif group | homologous HL_7A0S_007 HL_02862.2 | |
| HL_5DOY_120 | 1/2A/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_5DOY_121 | 1/2A/271I:271O | No text annotation Not in a motif group | geometric HL_5J7L_018 HL_34168.2 | |
| HL_5DOY_122 | 1/2A/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_89380.2 | |
| HL_5DOY_123 | 1/2A/319:323 | No text annotation Not in a motif group | homologous HL_7RQB_011 HL_75407.1 | |
| HL_5DOY_124 | 1/2A/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.8 | |
| HL_5DOY_125 | 1/2A/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
| HL_5DOY_126 | 1/2A/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_5DOY_127 | 1/2A/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_5DOY_128 | 1/2A/487:493 | GNRA Not in a motif group | homologous HL_4WF9_016 HL_42097.1 | |
| HL_5DOY_130 | 1/2A/566:575 | No text annotation Not in a motif group | geometric HL_7RQB_018 HL_89380.2 | |
| HL_5DOY_131 | 1/2A/612:615 | No text annotation Not in a motif group | homologous HL_7RQB_019 HL_32369.1 | |
| HL_5DOY_132 | 1/2A/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_42097.1 | |
| HL_5DOY_133 | 1/2A/641:647 | No text annotation Not in a motif group | homologous HL_7RQB_021 HL_42097.1 | |
| HL_5DOY_134 | 1/2A/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_5DOY_135 | 1/2A/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
| HL_5DOY_136 | 1/2A/779:785 | No text annotation Not in a motif group | homologous HL_5J7L_156 HL_74322.1 | |
| HL_5DOY_137 | 1/2A/826:831 | No text annotation Not in a motif group | homologous HL_4WF9_025 HL_64365.1 | |
| HL_5DOY_138 | 1/2A/882:894 | No text annotation Not in a motif group | ||
| HL_5DOY_139 | 1/2A/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.1 | |
| HL_5DOY_140 | 1/2A/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
| HL_5DOY_143 | 1/2A/1222:1227 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_42097.1 | |
| HL_5DOY_144 | 1/2A/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_89380.2 | |
| HL_5DOY_145 | 1/2A/1324:1330 | No text annotation Not in a motif group | geometric HL_7RQB_034 HL_46680.1 | |
| HL_5DOY_146 | 1/2A/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_87030.2 | |
| HL_5DOY_147 | 1/2A/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_69023.2 | |
| HL_5DOY_148 | 1/2A/1451:1459 | No text annotation Not in a motif group | geometric HL_7RQB_037 HL_32426.1 | |
| HL_5DOY_149 | 1/2A/1492:1498 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_46680.1 | |
| HL_5DOY_151 | 1/2A/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_38927.2 | |
| HL_5DOY_152 | 1/2A/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_5DOY_153 | 1/2A/1631:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.1 | |
| HL_5DOY_154 | 1/2A/1691:1696 | No text annotation Not in a motif group | geometric HL_7RQB_042 HL_03562.2 | |
| HL_5DOY_155 | 1/2A/1720:1742 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_43656.2 | |
| HL_5DOY_156 | 1/2A/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_5DOY_157 | 1/2A/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.5 | |
| HL_5DOY_158 | 1/2A/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_5DOY_159 | 1/2A/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_42097.1 | |
| HL_5DOY_160 | 1/2A/1909:1921 | No text annotation Not in a motif group | homologous HL_7RQB_048 NA | |
| HL_5DOY_161 | 1/2A/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_51824.1 | |
| HL_5DOY_162 | 1/2A/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_5DOY_164 | 1/2A/2205:2219 | No text annotation Not in a motif group | homologous HL_7RQB_052 HL_98426.1 | |
| HL_5DOY_165 | 1/2A/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_5DOY_166 | 1/2A/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_5DOY_167 | 1/2A/2303:2313 | No text annotation Not in a motif group | ||
| HL_5DOY_168 | 1/2A/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_5DOY_169 | 1/2A/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_09136.1 | |
| HL_5DOY_170 | 1/2A/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_42097.1 | |
| HL_5DOY_171 | 1/2A/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_30784.2 | |
| HL_5DOY_172 | 1/2A/2471:2479 | No text annotation Not in a motif group | homologous HL_5J7L_193 HL_06192.2 | |
| HL_5DOY_173 | 1/2A/2527:2536 | No text annotation Not in a motif group | geometric HL_2DER_005 HL_27930.1 | |
| HL_5DOY_174 | 1/2A/2551:2557 | No text annotation Not in a motif group | homologous HL_7RQB_062 NA | |
| HL_5DOY_175 | 1/2A/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_5DOY_176 | 1/2A/2658:2663 | GNRA Not in a motif group | homologous HL_5J7L_197 HL_42097.1 | |
| HL_5DOY_177 | 1/2A/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
| HL_5DOY_178 | 1/2A/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_5DOY_180 | 1/2A/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
| HL_5DOY_181 | 1/2A/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 | |
| HL_5DOY_182 | 1/2B/38:44 | No text annotation Not in a motif group | homologous HL_7RQB_070 HL_87939.1 | |
| HL_5DOY_183 | 1/2B/86:91 | No text annotation Not in a motif group | homologous HL_7RQB_071 HL_42097.1 | |
| HL_5DOY_184 | 1/2a/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_5DOY_186 | 1/2a/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_42097.1 | |
| HL_5DOY_187 | 1/2a/189C:189H | No text annotation Not in a motif group | homologous HL_4LFB_004 HL_10278.1 | |
| HL_5DOY_188 | 1/2a/201:216 | No text annotation Not in a motif group | homologous HL_4LFB_005 HL_56691.2 | |
| HL_5DOY_189 | 1/2a/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_5DOY_190 | 1/2a/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_5DOY_191 | 1/2a/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_5DOY_192 | 1/2a/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_5DOY_193 | 1/2a/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.1 | |
| HL_5DOY_194 | 1/2a/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_5DOY_195 | 1/2a/458:473 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_43656.2 | |
| HL_5DOY_196 | 1/2a/521:528 | No text annotation Not in a motif group | homologous HL_5J7L_013 NA | |
| HL_5DOY_197 | 1/2a/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_5DOY_198 | 1/2a/689:698 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_12326.1 | |
| HL_5DOY_199 | 1/2a/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_5DOY_200 | 1/2a/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
| HL_5DOY_201 | 1/2a/838:848 | No text annotation Not in a motif group | homologous HL_6CZR_089 HL_53837.1 | |
| HL_5DOY_202 | 1/2a/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_5DOY_203 | 1/2a/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_5DOY_204 | 1/2a/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_5DOY_205 | 1/2a/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_5DOY_207 | 1/2a/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
| HL_5DOY_208 | 1/2a/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_5DOY_209 | 1/2a/1134:1140 | No text annotation Not in a motif group | homologous HL_4LFB_026 HL_03562.2 | |
| HL_5DOY_210 | 1/2a/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_5DOY_211 | 1/2a/1265:1270 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_42097.1 | |
| HL_5DOY_212 | 1/2a/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_5DOY_213 | 1/2a/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_5DOY_214 | 1/2a/1445:1457 | No text annotation Not in a motif group | homologous HL_6CZR_102 HL_49722.1 | |
| HL_5DOY_215 | 1/2a/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_5DOY_217 | 1/2w/30:40 | No text annotation Not in a motif group | homologous HL_1B23_002 NA | |
| HL_5DOY_218 | 1/2w/53:61 | No text annotation Not in a motif group | homologous HL_5L4O_003 NA | |
| HL_5DOY_219 | 1/2x/13:22 | No text annotation Not in a motif group | homologous HL_6CFJ_106 HL_25462.2 | |
| HL_5DOY_220 | 1/2x/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4TUE_034 HL_53597.2 | |
| HL_5DOY_221 | 1/2x/53:61 | No text annotation Not in a motif group | homologous HL_5L4O_003 NA | |
| HL_5DOY_223 | 1/2y/30:40 | No text annotation Not in a motif group | homologous HL_4WQ1_224 NA | |
| HL_5DOY_224 | 1/2y/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5WWT_002 HL_22280.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5DOY_005 | No text annotation | ||
| HL_5DOY_017 | No text annotation | ||
| HL_5DOY_029 | No text annotation | ||
| HL_5DOY_030 | No text annotation | ||
| HL_5DOY_051 | UNCG | ||
| HL_5DOY_067 | No text annotation | ||
| HL_5DOY_073 | No text annotation | ||
| HL_5DOY_080 | No text annotation | ||
| HL_5DOY_094 | No text annotation | ||
| HL_5DOY_104 | No text annotation | ||
| HL_5DOY_110 | No text annotation | ||
| HL_5DOY_117 | No text annotation | ||
| HL_5DOY_129 | No text annotation | ||
| HL_5DOY_141 | No text annotation | ||
| HL_5DOY_142 | No text annotation | ||
| HL_5DOY_150 | No text annotation | ||
| HL_5DOY_163 | UNCG | ||
| HL_5DOY_179 | No text annotation | ||
| HL_5DOY_185 | No text annotation | ||
| HL_5DOY_206 | No text annotation | ||
| HL_5DOY_216 | No text annotation | ||
| HL_5DOY_222 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5DOY_001 | 1/1A/24:30, 1/1A/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 IL_66414.6 | |
| IL_5DOY_002 | 1/1A/36:37, 1/1A/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_5DOY_003 | 1/1A/42:43, 1/1A/434:436 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 IL_42622.2 | |
| IL_5DOY_004 | 1/1A/81:85, 1/1A/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_5DOY_005 | 1/1A/183:184, 1/1A/212:214 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_76488.2 | |
| IL_5DOY_006 | 1/1A/188:194, 1/1A/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_006 IL_04346.7 | |
| IL_5DOY_007 | 1/1A/239:245, 1/1A/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
| IL_5DOY_008 | 1/1A/272D:272E, 1/1A/363E:364 | Major groove platform Not in a motif group | homologous IL_7RQB_009 IL_27635.1 | |
| IL_5DOY_010 | 1/1A/280:284, 1/1A/357:360 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 IL_04059.1 | |
| IL_5DOY_011 | 1/1A/288:290, 1/1A/350:353 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 IL_38958.7 | |
| IL_5DOY_012 | 1/1A/293:295, 1/1A/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_5DOY_013 | 1/1A/481:484, 1/1A/496:509 | No text annotation Not in a motif group | homologous IL_7RQB_014 IL_60992.6 | |
| IL_5DOY_014 | 1/1A/564:566, 1/1A/575:577 | No text annotation Not in a motif group | homologous IL_7RQB_015 IL_95997.1 | |
| IL_5DOY_015 | 1/1A/606:610, 1/1A/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 IL_17136.1 | |
| IL_5DOY_016 | 1/1A/672:674, 1/1A/806:808 | No text annotation Not in a motif group | geometric IL_7RQB_017 IL_95997.1 | |
| IL_5DOY_017 | 1/1A/674:678, 1/1A/799:806 | No text annotation Not in a motif group | homologous IL_7RQB_018 IL_17470.6 | |
| IL_5DOY_018 | 1/1A/697:698, 1/1A/763:765 | Single bulged A Not in a motif group | homologous IL_7RQB_019 IL_37497.2 | |
| IL_5DOY_019 | 1/1A/702:703, 1/1A/728:730 | Single bulged G Not in a motif group | geometric IL_7RQB_020 IL_00225.2 | |
| IL_5DOY_020 | 1/1A/703:707, 1/1A/724:728 | Triple sheared Not in a motif group | homologous IL_7RQB_021 IL_56467.8 | |
| IL_5DOY_021 | 1/1A/738:741, 1/1A/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_05564.2 | |
| IL_5DOY_022 | 1/1A/775:777, 1/1A/787:791 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_023 IL_90991.6 | |
| IL_5DOY_023 | 1/1A/837:838, 1/1A/940:942 | Single stack bend Not in a motif group | homologous IL_7RQB_024 IL_92001.1 | |
| IL_5DOY_024 | 1/1A/844:846, 1/1A/931:934 | Intercalated cWW Not in a motif group | homologous IL_7RQB_025 IL_52767.2 | |
| IL_5DOY_025 | 1/1A/846:850, 1/1A/927:931 | No text annotation Not in a motif group | geometric IL_7RQB_026 IL_94165.1 | |
| IL_5DOY_026 | 1/1A/857:862, 1/1A/915:920 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_7A0S_027 IL_81631.1 | |
| IL_5DOY_027 | 1/1A/862:863, 1/1A/913:915 | Minor groove platform Not in a motif group | geometric IL_7RQB_028 IL_42622.2 | |
| IL_5DOY_028 | 1/1A/864:868, 1/1A/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
| IL_5DOY_029 | 1/1A/870:872, 1/1A/905:907 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_034 IL_52767.2 | |
| IL_5DOY_030 | 1/1A/875:881, 1/1A/895:902 | No text annotation Not in a motif group | ||
| IL_5DOY_031 | 1/1A/952:954, 1/1A/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
| IL_5DOY_032 | 1/1A/994:996, 1/1A/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_5DOY_033 | 1/1A/998:1002, 1/1A/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 IL_89002.2 | |
| IL_5DOY_034 | 1/1A/1004:1011, 1/1A/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_7RQB_037 IL_15861.7 | |
| IL_5DOY_035 | 1/1A/1011:1013, 1/1A/1149:1150 | Single bulged U Not in a motif group | homologous IL_7RQB_038 IL_83039.13 | |
| IL_5DOY_036 | 1/1A/1018:1024, 1/1A/1140:1144 | No text annotation Not in a motif group | geometric IL_7RQB_039 IL_57188.3 | |
| IL_5DOY_037 | 1/1A/1024:1030, 1/1A/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 IL_50715.1 | |
| IL_5DOY_038 | 1/1A/1031:1034, 1/1A/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_5DOY_039 | 1/1A/1043:1051, 1/1A/1108:1112 | Kink-turn Not in a motif group | homologous IL_7RQB_042 IL_90538.4 | |
| IL_5DOY_043 | 1/1A/1196:1198, 1/1A/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 IL_52767.2 | |
| IL_5DOY_044 | 1/1A/1202:1206, 1/1A/1240:1243 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
| IL_5DOY_045 | 1/1A/1208:1215, 1/1A/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_5DOY_046 | 1/1A/1219:1221, 1/1A/1229:1230 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_37497.2 | |
| IL_5DOY_047 | 1/1A/1262:1269, 1/1A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
| IL_5DOY_048 | 1/1A/1310:1313, 1/1A/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_5DOY_049 | 1/1A/1319:1323, 1/1A/1331:1333 | C-loop Not in a motif group | homologous IL_7RQB_051 IL_63596.6 | |
| IL_5DOY_050 | 1/1A/1351:1355, 1/1A/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_5DOY_051 | 1/1A/1357:1361, 1/1A/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 IL_17136.1 | |
| IL_5DOY_052 | 1/1A/1415:1416, 1/1A/1582:1587 | No text annotation Not in a motif group | homologous IL_7RQB_054 IL_67474.4 | |
| IL_5DOY_053 | 1/1A/1417:1421, 1/1A/1577:1581 | UAA/GAN Not in a motif group | homologous IL_7RQB_055 IL_89002.2 | |
| IL_5DOY_054 | 1/1A/1433:1435, 1/1A/1557:1560 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 IL_54997.7 | |
| IL_5DOY_055 | 1/1A/1437:1440, 1/1A/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_5DOY_056 | 1/1A/1448:1450, 1/1A/1462:1463 | Single stack bend Not in a motif group | homologous IL_7RQB_058 IL_76488.2 | |
| IL_5DOY_057 | 1/1A/1450A:1451, 1/1A/1459:1461 | Single bulged A Not in a motif group | geometric IL_7RQB_059 IL_37497.2 | |
| IL_5DOY_058 | 1/1A/1469:1473, 1/1A/1518:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_07235.1 | |
| IL_5DOY_059 | 1/1A/1481:1482, 1/1A/1506:1510 | No text annotation Not in a motif group | homologous IL_7RQB_061 IL_52493.1 | |
| IL_5DOY_060 | 1/1A/1489:1491, 1/1A/1499:1500 | Single bulged A Not in a motif group | homologous IL_7RQB_062 IL_37497.2 | |
| IL_5DOY_061 | 1/1A/1526:1529, 1/1A/1540:1546 | No text annotation Not in a motif group | homologous IL_7RQB_063 IL_02656.1 | |
| IL_5DOY_062 | 1/1A/1651:1656, 1/1A/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_5DOY_063 | 1/1A/1663:1665, 1/1A/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 IL_54997.7 | |
| IL_5DOY_064 | 1/1A/1666:1669, 1/1A/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 IL_50694.2 | |
| IL_5DOY_065 | 1/1A/1669:1674, 1/1A/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_7RQB_067 IL_82842.2 | |
| IL_5DOY_066 | 1/1A/1686:1691, 1/1A/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 IL_65969.2 | |
| IL_5DOY_067 | 1/1A/1770:1771, 1/1A/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.2 | |
| IL_5DOY_068 | 1/1A/1798:1804, 1/1A/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_5DOY_069 | 1/1A/1837:1840, 1/1A/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 IL_88739.1 | |
| IL_5DOY_070 | 1/1A/1841:1842, 1/1A/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_072 IL_16396.2 | |
| IL_5DOY_071 | 1/1A/1846:1849, 1/1A/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
| IL_5DOY_072 | 1/1A/1851:1855, 1/1A/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_90318.1 | |
| IL_5DOY_073 | 1/1A/1856:1860, 1/1A/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_5DOY_074 | 1/1A/1933:1934, 1/1A/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_076 IL_59677.2 | |
| IL_5DOY_075 | 1/1A/1934:1945, 1/1A/1961:1964 | No text annotation Not in a motif group | homologous IL_7RQB_077 NA | |
| IL_5DOY_076 | 1/1A/2050:2052, 1/1A/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.1 | |
| IL_5DOY_077 | 1/1A/2054:2057, 1/1A/2611:2615 | No text annotation Not in a motif group | ||
| IL_5DOY_078 | 1/1A/2067:2069, 1/1A/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_5DOY_079 | 1/1A/2070:2071, 1/1A/2438:2441 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_5DOY_080 | 1/1A/2081:2083, 1/1A/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_5DOY_081 | 1/1A/2085:2087, 1/1A/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
| IL_5DOY_087 | 1/1A/2297:2299, 1/1A/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_088 IL_38958.7 | |
| IL_5DOY_088 | 1/1A/2350:2353, 1/1A/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
| IL_5DOY_089 | 1/1A/2401:2403, 1/1A/2414:2415 | Major groove platform Not in a motif group | homologous IL_7RQB_090 IL_27635.1 | |
| IL_5DOY_090 | 1/1A/2453:2454, 1/1A/2498:2500 | Single stack bend Not in a motif group | geometric IL_7RQB_091 IL_76488.2 | |
| IL_5DOY_091 | 1/1A/2454:2455, 1/1A/2496:2498 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_27635.1 | |
| IL_5DOY_092 | 1/1A/2457:2459, 1/1A/2493:2494 | Major groove platform Not in a motif group | geometric IL_4WF9_091 IL_27635.1 | |
| IL_5DOY_093 | 1/1A/2459:2461, 1/1A/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_094 IL_92788.2 | |
| IL_5DOY_094 | 1/1A/2466:2470, 1/1A/2480:2484 | Triple sheared Not in a motif group | homologous IL_7RQB_095 IL_56467.8 | |
| IL_5DOY_095 | 1/1A/2507:2508, 1/1A/2580:2582 | Major groove platform Not in a motif group | homologous IL_7RQB_096 IL_76223.2 | |
| IL_5DOY_096 | 1/1A/2510:2512, 1/1A/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7RQB_097 IL_90933.2 | |
| IL_5DOY_097 | 1/1A/2512:2513, 1/1A/2571:2574 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_098 IL_71530.2 | |
| IL_5DOY_098 | 1/1A/2522:2523, 1/1A/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_7RQB_099 IL_95601.3 | |
| IL_5DOY_099 | 1/1A/2588:2590, 1/1A/2604:2606 | No text annotation Not in a motif group | homologous IL_7RQB_100 NA | |
| IL_5DOY_100 | 1/1A/2591:2592, 1/1A/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_5DOY_101 | 1/1A/2636:2640, 1/1A/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
| IL_5DOY_102 | 1/1A/2652:2658, 1/1A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7RQB_103 IL_16458.1 | |
| IL_5DOY_103 | 1/1A/2680:2684, 1/1A/2725:2727 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.6 | |
| IL_5DOY_104 | 1/1A/2687:2691, 1/1A/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_5DOY_105 | 1/1A/2695:2696, 1/1A/2711:2714 | No text annotation Not in a motif group | ||
| IL_5DOY_106 | 1/1A/2737:2742, 1/1A/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_5DOY_107 | 1/1A/2838:2839, 1/1A/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_5DOY_108 | 1/1A/2843:2846, 1/1A/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
| IL_5DOY_109 | 1/1A/2847:2852, 1/1A/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
| IL_5DOY_110 | 1/1B/17:18, 1/1B/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_37497.2 | |
| IL_5DOY_111 | 1/1B/23:28, 1/1B/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_5DOY_112 | 1/1B/30:31, 1/1B/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7RQB_113 IL_09061.6 | |
| IL_5DOY_113 | 1/1B/34:38, 1/1B/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_7RQB_114 IL_58103.6 | |
| IL_5DOY_114 | 1/1B/71:79, 1/1B/98:106 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
| IL_5DOY_115 | 1/1a/30:32, 1/1a/552:553 | Single bulged G Not in a motif group | homologous IL_6CZR_113 IL_00225.2 | |
| IL_5DOY_116 | 1/1a/44:45, 1/1a/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_5DOY_117 | 1/1a/47:52, 1/1a/359:361 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_11178.1 | |
| IL_5DOY_118 | 1/1a/54:56, 1/1a/356:357 | Minor groove platform Not in a motif group | homologous IL_5J7L_004 IL_93353.1 | |
| IL_5DOY_119 | 1/1a/63:66, 1/1a/103:104 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_5DOY_120 | 1/1a/67:69, 1/1a/100:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_95997.1 | |
| IL_5DOY_121 | 1/1a/129:131, 1/1a/231:232 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_5DOY_122 | 1/1a/132:136, 1/1a/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_5DOY_124 | 1/1a/147:153, 1/1a/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_5DOY_125 | 1/1a/186:188, 1/1a/189L:191 | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_95997.1 | |
| IL_5DOY_126 | 1/1a/242:247, 1/1a/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_5DOY_127 | 1/1a/249:252, 1/1a/274:275 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_48100.2 | |
| IL_5DOY_128 | 1/1a/292:293, 1/1a/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_5DOY_129 | 1/1a/367:369, 1/1a/392:393 | Single bulged U Not in a motif group | homologous IL_5J7L_017 IL_83039.13 | |
| IL_5DOY_130 | 1/1a/371:375, 1/1a/389:390 | C-loop Not in a motif group | homologous IL_5J7L_018 IL_75255.1 | |
| IL_5DOY_131 | 1/1a/375:376, 1/1a/387:389 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_5DOY_132 | 1/1a/409:416, 1/1a/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_5DOY_133 | 1/1a/446:450, 1/1a/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4LFB_018 IL_88269.3 | |
| IL_5DOY_134 | 1/1a/450:455, 1/1a/476:483 | No text annotation Not in a motif group | geometric IL_4LFB_019 IL_11882.1 | |
| IL_5DOY_135 | 1/1a/504:511, 1/1a/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_5DOY_136 | 1/1a/515:521, 1/1a/528:536 | No text annotation Not in a motif group | homologous IL_4LFB_021 NA | |
| IL_5DOY_137 | 1/1a/569:575, 1/1a/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_5DOY_138 | 1/1a/580:584, 1/1a/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_6CZR_135 IL_17136.1 | |
| IL_5DOY_139 | 1/1a/594:596, 1/1a/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_5DOY_140 | 1/1a/597:598, 1/1a/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_5DOY_141 | 1/1a/605:612, 1/1a/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_5DOY_142 | 1/1a/654:655, 1/1a/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
| IL_5DOY_143 | 1/1a/657:658, 1/1a/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.1 | |
| IL_5DOY_144 | 1/1a/662:666, 1/1a/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_5DOY_145 | 1/1a/673:678, 1/1a/712:717 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.1 | |
| IL_5DOY_146 | 1/1a/683:688, 1/1a/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_5DOY_147 | 1/1a/774:778, 1/1a/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_5DOY_148 | 1/1a/779:783, 1/1a/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_5DOY_149 | 1/1a/887:894, 1/1a/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_5DOY_150 | 1/1a/922:923, 1/1a/1393:1395 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.2 | |
| IL_5DOY_151 | 1/1a/925:927, 1/1a/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_5DOY_152 | 1/1a/933:935, 1/1a/1380:1384 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_5DOY_153 | 1/1a/953:954, 1/1a/1226:1228 | No text annotation Not in a motif group | homologous IL_6CZR_150 NA | |
| IL_5DOY_154 | 1/1a/993:997, 1/1a/1044:1045 | Minor groove platform Not in a motif group | homologous IL_4LFB_039 IL_47078.1 | |
| IL_5DOY_155 | 1/1a/1008:1010, 1/1a/1019:1021 | Isolated cWS basepair Not in a motif group | geometric IL_4TS2_003 IL_52767.2 | |
| IL_5DOY_156 | 1/1a/1048:1050, 1/1a/1208:1209 | Single bulged U Not in a motif group | geometric IL_4LFB_042 IL_83039.13 | |
| IL_5DOY_157 | 1/1a/1050:1052, 1/1a/1206:1208 | No text annotation Not in a motif group | homologous IL_4LFB_043 NA | |
| IL_5DOY_158 | 1/1a/1052:1056, 1/1a/1204:1206 | Isolated cWS basepair Not in a motif group | geometric IL_4LFB_044 IL_76319.2 | |
| IL_5DOY_159 | 1/1a/1057:1058, 1/1a/1199:1203 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_93353.1 | |
| IL_5DOY_160 | 1/1a/1060:1061, 1/1a/1195:1197 | Single bulged U Not in a motif group | geometric IL_4LFB_046 IL_83039.13 | |
| IL_5DOY_161 | 1/1a/1061:1063, 1/1a/1193:1195 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
| IL_5DOY_162 | 1/1a/1124:1127, 1/1a/1145:1149 | Minor groove platform Not in a motif group | homologous IL_6CZR_158 IL_58103.6 | |
| IL_5DOY_163 | 1/1a/1129:1132, 1/1a/1142:1143 | Minor groove platform Not in a motif group | homologous IL_4LFB_049 IL_15052.1 | |
| IL_5DOY_164 | 1/1a/1158:1161, 1/1a/1175:1181 | No text annotation Not in a motif group | geometric IL_5J7L_053 IL_42032.1 | |
| IL_5DOY_165 | 1/1a/1247:1253, 1/1a/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_5DOY_166 | 1/1a/1255:1258, 1/1a/1277:1282 | No text annotation Not in a motif group | homologous IL_6CZR_161 IL_75461.4 | |
| IL_5DOY_167 | 1/1a/1259:1260, 1/1a/1274:1276 | Not an internal loop Not in a motif group | homologous IL_4LFB_053 IL_93353.1 | |
| IL_5DOY_168 | 1/1a/1260:1262, 1/1a/1273:1274 | Minor groove platform Not in a motif group | geometric IL_4LFB_054 IL_93353.1 | |
| IL_5DOY_169 | 1/1a/1303:1308, 1/1a/1329:1334 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_5DOY_170 | 1/1a/1399:1401, 1/1a/1501:1504 | No text annotation Not in a motif group | homologous IL_5J7L_058 IL_36143.3 | |
| IL_5DOY_171 | 1/1a/1401:1405, 1/1a/1496:1501 | No text annotation Not in a motif group | ||
| IL_5DOY_172 | 1/1a/1405:1409, 1/1a/1491:1496 | No text annotation Not in a motif group | ||
| IL_5DOY_173 | 1/1a/1412:1415, 1/1a/1485:1488 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_6CZR_168 IL_67743.1 | |
| IL_5DOY_174 | 1/1a/1416:1419, 1/1a/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_5DOY_175 | 1/1a/1431:1435, 1/1a/1466:1469 | UAA/GAN variation Not in a motif group | homologous IL_4LFB_062 IL_07235.1 | |
| IL_5DOY_176 | 1/1a/1435:1437, 1/1a/1464:1466 | No text annotation Not in a motif group | geometric IL_6CZR_171 IL_95997.1 | |
| IL_5DOY_177 | 1/1a/1440:1443, 1/1a/1459:1461 | Isolated basepair with bulged bases Not in a motif group | homologous IL_6CZR_172 IL_92788.2 | |
| IL_5DOY_178 | 1/2A/24:30, 1/2A/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 IL_66414.6 | |
| IL_5DOY_179 | 1/2A/36:37, 1/2A/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_5DOY_180 | 1/2A/42:43, 1/2A/434:436 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 IL_42622.2 | |
| IL_5DOY_181 | 1/2A/81:85, 1/2A/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_5DOY_182 | 1/2A/183:184, 1/2A/212:214 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_76488.2 | |
| IL_5DOY_183 | 1/2A/188:194, 1/2A/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_006 IL_04346.7 | |
| IL_5DOY_184 | 1/2A/239:245, 1/2A/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
| IL_5DOY_185 | 1/2A/271D:271F, 1/2A/271R:271T | No text annotation Not in a motif group | homologous IL_4WF9_010 NA | |
| IL_5DOY_186 | 1/2A/272D:272E, 1/2A/363E:364 | Major groove platform Not in a motif group | homologous IL_7RQB_009 IL_27635.1 | |
| IL_5DOY_188 | 1/2A/272J:279, 1/2A/361:363 | No text annotation Not in a motif group | ||
| IL_5DOY_189 | 1/2A/280:284, 1/2A/357:360 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 IL_04059.1 | |
| IL_5DOY_190 | 1/2A/288:290, 1/2A/350:353 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 IL_38958.7 | |
| IL_5DOY_191 | 1/2A/293:295, 1/2A/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_5DOY_192 | 1/2A/481:484, 1/2A/496:509 | No text annotation Not in a motif group | homologous IL_7RQB_014 IL_60992.6 | |
| IL_5DOY_193 | 1/2A/564:566, 1/2A/575:577 | No text annotation Not in a motif group | homologous IL_7RQB_015 IL_95997.1 | |
| IL_5DOY_194 | 1/2A/606:610, 1/2A/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 IL_17136.1 | |
| IL_5DOY_195 | 1/2A/672:674, 1/2A/806:808 | No text annotation Not in a motif group | geometric IL_7RQB_017 IL_95997.1 | |
| IL_5DOY_196 | 1/2A/674:678, 1/2A/799:806 | No text annotation Not in a motif group | homologous IL_7RQB_018 IL_17470.6 | |
| IL_5DOY_197 | 1/2A/697:698, 1/2A/763:765 | Single bulged A Not in a motif group | homologous IL_7RQB_019 IL_37497.2 | |
| IL_5DOY_198 | 1/2A/702:703, 1/2A/728:730 | Single bulged G Not in a motif group | geometric IL_7RQB_020 IL_00225.2 | |
| IL_5DOY_199 | 1/2A/703:707, 1/2A/724:728 | Triple sheared Not in a motif group | homologous IL_7RQB_021 IL_56467.8 | |
| IL_5DOY_200 | 1/2A/738:741, 1/2A/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_05564.2 | |
| IL_5DOY_201 | 1/2A/775:777, 1/2A/787:791 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_023 IL_90991.6 | |
| IL_5DOY_202 | 1/2A/837:838, 1/2A/940:942 | Single stack bend Not in a motif group | homologous IL_7RQB_024 IL_92001.1 | |
| IL_5DOY_203 | 1/2A/844:846, 1/2A/931:934 | Intercalated cWW Not in a motif group | homologous IL_7RQB_025 IL_52767.2 | |
| IL_5DOY_204 | 1/2A/846:850, 1/2A/927:931 | No text annotation Not in a motif group | geometric IL_7RQB_026 IL_94165.1 | |
| IL_5DOY_205 | 1/2A/858:862, 1/2A/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7RQB_027 IL_38862.1 | |
| IL_5DOY_206 | 1/2A/862:863, 1/2A/913:915 | Minor groove platform Not in a motif group | homologous IL_7RQB_028 IL_42622.2 | |
| IL_5DOY_207 | 1/2A/864:868, 1/2A/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
| IL_5DOY_208 | 1/2A/870:873, 1/2A/904:907 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6JDV_002 IL_30621.2 | |
| IL_5DOY_209 | 1/2A/874:880, 1/2A/897:903 | No text annotation Not in a motif group | ||
| IL_5DOY_210 | 1/2A/880:881, 1/2A/895:897 | Single bulged A Not in a motif group | homologous IL_7RQB_033 IL_37497.2 | |
| IL_5DOY_211 | 1/2A/952:954, 1/2A/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
| IL_5DOY_212 | 1/2A/994:996, 1/2A/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_5DOY_213 | 1/2A/998:1002, 1/2A/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 IL_89002.2 | |
| IL_5DOY_214 | 1/2A/1004:1011, 1/2A/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_7RQB_037 IL_15861.7 | |
| IL_5DOY_215 | 1/2A/1011:1013, 1/2A/1149:1150 | Single bulged U Not in a motif group | homologous IL_7RQB_038 IL_83039.13 | |
| IL_5DOY_216 | 1/2A/1018:1024, 1/2A/1140:1144 | No text annotation Not in a motif group | geometric IL_4WF9_039 IL_57188.3 | |
| IL_5DOY_217 | 1/2A/1024:1030, 1/2A/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 IL_50715.1 | |
| IL_5DOY_218 | 1/2A/1031:1034, 1/2A/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_5DOY_221 | 1/2A/1196:1198, 1/2A/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 IL_52767.2 | |
| IL_5DOY_222 | 1/2A/1202:1206, 1/2A/1240:1243 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
| IL_5DOY_223 | 1/2A/1208:1215, 1/2A/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_5DOY_224 | 1/2A/1219:1221, 1/2A/1229:1230 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_37497.2 | |
| IL_5DOY_225 | 1/2A/1262:1269, 1/2A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
| IL_5DOY_226 | 1/2A/1310:1313, 1/2A/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_5DOY_227 | 1/2A/1319:1324, 1/2A/1330:1333 | C-loop with extra cWW pair Not in a motif group | geometric IL_4V88_408 IL_93630.2 | |
| IL_5DOY_228 | 1/2A/1351:1355, 1/2A/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_5DOY_229 | 1/2A/1357:1361, 1/2A/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 IL_17136.1 | |
| IL_5DOY_230 | 1/2A/1415:1416, 1/2A/1582:1587 | No text annotation Not in a motif group | homologous IL_7RQB_054 IL_67474.4 | |
| IL_5DOY_231 | 1/2A/1417:1421, 1/2A/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
| IL_5DOY_232 | 1/2A/1433:1435, 1/2A/1557:1560 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 IL_54997.7 | |
| IL_5DOY_233 | 1/2A/1437:1440, 1/2A/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_5DOY_234 | 1/2A/1448:1450, 1/2A/1462:1463 | Single stack bend Not in a motif group | homologous IL_7RQB_058 IL_76488.2 | |
| IL_5DOY_235 | 1/2A/1450A:1451, 1/2A/1459:1461 | Single bulged A Not in a motif group | homologous IL_7RQB_059 IL_37497.2 | |
| IL_5DOY_236 | 1/2A/1469:1473, 1/2A/1518:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_07235.1 | |
| IL_5DOY_237 | 1/2A/1481:1482, 1/2A/1506:1510 | No text annotation Not in a motif group | homologous IL_7RQB_061 IL_52493.1 | |
| IL_5DOY_238 | 1/2A/1489:1491, 1/2A/1499:1500 | Single bulged A Not in a motif group | homologous IL_7RQB_062 IL_37497.2 | |
| IL_5DOY_239 | 1/2A/1526:1529, 1/2A/1540:1546 | No text annotation Not in a motif group | homologous IL_7RQB_063 IL_02656.1 | |
| IL_5DOY_240 | 1/2A/1651:1656, 1/2A/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_5DOY_241 | 1/2A/1663:1665, 1/2A/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 IL_54997.7 | |
| IL_5DOY_242 | 1/2A/1666:1669, 1/2A/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 IL_50694.2 | |
| IL_5DOY_243 | 1/2A/1669:1674, 1/2A/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_7RQB_067 IL_82842.2 | |
| IL_5DOY_244 | 1/2A/1686:1691, 1/2A/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 IL_65969.2 | |
| IL_5DOY_245 | 1/2A/1770:1771, 1/2A/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.2 | |
| IL_5DOY_246 | 1/2A/1798:1804, 1/2A/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_5DOY_247 | 1/2A/1837:1840, 1/2A/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 IL_88739.1 | |
| IL_5DOY_248 | 1/2A/1841:1842, 1/2A/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_072 IL_16396.2 | |
| IL_5DOY_249 | 1/2A/1846:1849, 1/2A/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
| IL_5DOY_250 | 1/2A/1851:1855, 1/2A/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_90318.1 | |
| IL_5DOY_251 | 1/2A/1856:1860, 1/2A/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_5DOY_252 | 1/2A/1933:1934, 1/2A/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_318 IL_59677.2 | |
| IL_5DOY_253 | 1/2A/1934:1945, 1/2A/1961:1964 | No text annotation Not in a motif group | homologous IL_7RQB_077 NA | |
| IL_5DOY_254 | 1/2A/2050:2052, 1/2A/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.1 | |
| IL_5DOY_255 | 1/2A/2054:2057, 1/2A/2611:2615 | No text annotation Not in a motif group | ||
| IL_5DOY_256 | 1/2A/2067:2069, 1/2A/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_5DOY_257 | 1/2A/2070:2071, 1/2A/2438:2441 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_5DOY_258 | 1/2A/2081:2083, 1/2A/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_5DOY_259 | 1/2A/2085:2087, 1/2A/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
| IL_5DOY_264 | 1/2A/2297:2299, 1/2A/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_088 IL_38958.7 | |
| IL_5DOY_265 | 1/2A/2350:2353, 1/2A/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
| IL_5DOY_266 | 1/2A/2401:2403, 1/2A/2414:2415 | Major groove platform Not in a motif group | homologous IL_7RQB_090 IL_27635.1 | |
| IL_5DOY_267 | 1/2A/2453:2454, 1/2A/2498:2500 | Single stack bend Not in a motif group | homologous IL_7RQB_091 IL_76488.2 | |
| IL_5DOY_268 | 1/2A/2454:2455, 1/2A/2496:2498 | Major groove platform Not in a motif group | geometric IL_7RQB_092 IL_27635.1 | |
| IL_5DOY_269 | 1/2A/2457:2459, 1/2A/2493:2494 | Major groove platform Not in a motif group | geometric IL_4WF9_091 IL_27635.1 | |
| IL_5DOY_270 | 1/2A/2459:2461, 1/2A/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_094 IL_92788.2 | |
| IL_5DOY_271 | 1/2A/2466:2470, 1/2A/2480:2484 | Triple sheared Not in a motif group | homologous IL_7RQB_095 IL_56467.8 | |
| IL_5DOY_272 | 1/2A/2507:2508, 1/2A/2580:2582 | Major groove platform Not in a motif group | homologous IL_7RQB_096 IL_76223.2 | |
| IL_5DOY_273 | 1/2A/2510:2512, 1/2A/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_097 IL_90933.2 | |
| IL_5DOY_274 | 1/2A/2512:2513, 1/2A/2571:2574 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_098 IL_71530.2 | |
| IL_5DOY_275 | 1/2A/2522:2523, 1/2A/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_7RQB_099 IL_95601.3 | |
| IL_5DOY_276 | 1/2A/2588:2590, 1/2A/2604:2606 | No text annotation Not in a motif group | homologous IL_7RQB_100 NA | |
| IL_5DOY_277 | 1/2A/2591:2592, 1/2A/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_5DOY_278 | 1/2A/2636:2640, 1/2A/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
| IL_5DOY_279 | 1/2A/2652:2658, 1/2A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7RQB_103 IL_16458.1 | |
| IL_5DOY_280 | 1/2A/2680:2684, 1/2A/2725:2727 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.6 | |
| IL_5DOY_281 | 1/2A/2687:2691, 1/2A/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_5DOY_282 | 1/2A/2695:2696, 1/2A/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 IL_71530.2 | |
| IL_5DOY_283 | 1/2A/2737:2742, 1/2A/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_5DOY_284 | 1/2A/2838:2839, 1/2A/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_5DOY_285 | 1/2A/2843:2846, 1/2A/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
| IL_5DOY_286 | 1/2A/2847:2852, 1/2A/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
| IL_5DOY_287 | 1/2B/17:18, 1/2B/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_37497.2 | |
| IL_5DOY_288 | 1/2B/21:28, 1/2B/56:62 | No text annotation Not in a motif group | ||
| IL_5DOY_289 | 1/2B/30:31, 1/2B/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7RQB_113 IL_09061.6 | |
| IL_5DOY_291 | 1/2B/34:38, 1/2B/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_7RQB_114 IL_58103.6 | |
| IL_5DOY_292 | 1/2B/71:79, 1/2B/98:106 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
| IL_5DOY_294 | 1/2a/30:32, 1/2a/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.2 | |
| IL_5DOY_295 | 1/2a/44:45, 1/2a/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_5DOY_296 | 1/2a/47:52, 1/2a/359:361 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_11178.1 | |
| IL_5DOY_297 | 1/2a/54:56, 1/2a/356:357 | Minor groove platform Not in a motif group | homologous IL_5J7L_004 IL_93353.1 | |
| IL_5DOY_298 | 1/2a/63:66, 1/2a/103:104 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_5DOY_299 | 1/2a/67:69, 1/2a/100:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_95997.1 | |
| IL_5DOY_300 | 1/2a/129:131, 1/2a/231:232 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_5DOY_301 | 1/2a/132:136, 1/2a/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_5DOY_302 | 1/2a/148:153, 1/2a/168:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
| IL_5DOY_303 | 1/2a/186:188, 1/2a/189L:191 | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_95997.1 | |
| IL_5DOY_304 | 1/2a/242:247, 1/2a/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_5DOY_305 | 1/2a/249:252, 1/2a/274:275 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_48100.2 | |
| IL_5DOY_306 | 1/2a/292:293, 1/2a/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_5DOY_307 | 1/2a/367:369, 1/2a/392:393 | Single bulged U Not in a motif group | homologous IL_5J7L_017 IL_83039.13 | |
| IL_5DOY_308 | 1/2a/371:375, 1/2a/389:390 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_5DOY_309 | 1/2a/375:376, 1/2a/387:389 | Single bulged G Not in a motif group | homologous IL_5J7L_019 IL_00225.2 | |
| IL_5DOY_310 | 1/2a/409:416, 1/2a/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_5DOY_311 | 1/2a/446:450, 1/2a/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4LFB_018 IL_88269.3 | |
| IL_5DOY_312 | 1/2a/450:455, 1/2a/476:483 | No text annotation Not in a motif group | geometric IL_4LFB_019 IL_11882.1 | |
| IL_5DOY_313 | 1/2a/504:511, 1/2a/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
| IL_5DOY_314 | 1/2a/515:521, 1/2a/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_5DOY_315 | 1/2a/569:575, 1/2a/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_5DOY_316 | 1/2a/580:584, 1/2a/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_5DOY_317 | 1/2a/594:596, 1/2a/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_5DOY_318 | 1/2a/597:598, 1/2a/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_5DOY_319 | 1/2a/605:612, 1/2a/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_5DOY_320 | 1/2a/654:655, 1/2a/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
| IL_5DOY_321 | 1/2a/657:658, 1/2a/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.1 | |
| IL_5DOY_322 | 1/2a/662:666, 1/2a/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_5DOY_323 | 1/2a/683:688, 1/2a/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_5DOY_324 | 1/2a/774:778, 1/2a/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_5DOY_325 | 1/2a/779:783, 1/2a/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_5DOY_326 | 1/2a/887:894, 1/2a/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_5DOY_327 | 1/2a/922:923, 1/2a/1393:1395 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.2 | |
| IL_5DOY_328 | 1/2a/925:927, 1/2a/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_5DOY_329 | 1/2a/933:935, 1/2a/1380:1384 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_5DOY_330 | 1/2a/953:954, 1/2a/1226:1228 | No text annotation Not in a motif group | homologous IL_6CZR_150 NA | |
| IL_5DOY_331 | 1/2a/993:997, 1/2a/1044:1045 | Minor groove platform Not in a motif group | geometric IL_4LFB_039 IL_47078.1 | |
| IL_5DOY_334 | 1/2a/1048:1050, 1/2a/1208:1209 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.13 | |
| IL_5DOY_335 | 1/2a/1050:1052, 1/2a/1206:1208 | Isolated cWH basepair Not in a motif group | geometric IL_4KQ0_005 IL_51629.2 | |
| IL_5DOY_336 | 1/2a/1052:1056, 1/2a/1204:1206 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_5DOY_337 | 1/2a/1057:1058, 1/2a/1199:1203 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_93353.1 | |
| IL_5DOY_338 | 1/2a/1060:1061, 1/2a/1195:1197 | Single bulged U Not in a motif group | homologous IL_4LFB_046 IL_83039.13 | |
| IL_5DOY_339 | 1/2a/1061:1063, 1/2a/1193:1195 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
| IL_5DOY_340 | 1/2a/1124:1127, 1/2a/1145:1149 | Minor groove platform Not in a motif group | homologous IL_6CZR_158 IL_58103.6 | |
| IL_5DOY_341 | 1/2a/1129:1132, 1/2a/1142:1143 | Minor groove platform Not in a motif group | homologous IL_4LFB_049 IL_15052.1 | |
| IL_5DOY_342 | 1/2a/1158:1161, 1/2a/1175:1181 | No text annotation Not in a motif group | geometric IL_5J7L_053 IL_42032.1 | |
| IL_5DOY_343 | 1/2a/1247:1253, 1/2a/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_5DOY_344 | 1/2a/1255:1258, 1/2a/1277:1282 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_5DOY_345 | 1/2a/1259:1260, 1/2a/1274:1276 | Not an internal loop Not in a motif group | geometric IL_4LFB_053 IL_93353.1 | |
| IL_5DOY_346 | 1/2a/1260:1262, 1/2a/1273:1274 | Minor groove platform Not in a motif group | homologous IL_4LFB_054 IL_93353.1 | |
| IL_5DOY_347 | 1/2a/1303:1308, 1/2a/1329:1334 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_5DOY_348 | 1/2a/1399:1401, 1/2a/1501:1504 | No text annotation Not in a motif group | homologous IL_5J7L_058 IL_36143.3 | |
| IL_5DOY_349 | 1/2a/1401:1405, 1/2a/1496:1501 | No text annotation Not in a motif group | ||
| IL_5DOY_350 | 1/2a/1405:1409, 1/2a/1491:1496 | No text annotation Not in a motif group | ||
| IL_5DOY_351 | 1/2a/1412:1414, 1/2a/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_5DOY_352 | 1/2a/1416:1419, 1/2a/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_5DOY_353 | 1/2a/1431:1435, 1/2a/1466:1469 | UAA/GAN variation Not in a motif group | geometric IL_4LFB_062 IL_07235.1 | |
| IL_5DOY_354 | 1/2a/1435:1437, 1/2a/1464:1466 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_95997.1 | |
| IL_5DOY_355 | 1/2a/1440:1443, 1/2a/1459:1461 | Isolated basepair with bulged bases Not in a motif group | homologous IL_6CZR_172 IL_92788.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5DOY_009 | No text annotation | ||
| IL_5DOY_040 | No text annotation | ||
| IL_5DOY_041 | No text annotation | ||
| IL_5DOY_042 | Major groove platform with extra cWW | ||
| IL_5DOY_082 | No text annotation | ||
| IL_5DOY_083 | No text annotation | ||
| IL_5DOY_084 | No text annotation | ||
| IL_5DOY_085 | Kink-turn | ||
| IL_5DOY_086 | Isolated cWH basepair | ||
| IL_5DOY_123 | UU cWW | ||
| IL_5DOY_187 | No text annotation | ||
| IL_5DOY_219 | No text annotation | ||
| IL_5DOY_220 | No text annotation | ||
| IL_5DOY_260 | No text annotation | ||
| IL_5DOY_261 | No text annotation | ||
| IL_5DOY_262 | No text annotation | ||
| IL_5DOY_263 | No text annotation | ||
| IL_5DOY_290 | Isolated cWH basepair | ||
| IL_5DOY_293 | Not an internal loop | ||
| IL_5DOY_332 | No text annotation | ||
| IL_5DOY_333 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5DOY_001 | 1/1A/683:689, 1/1A/773:775, 1/1A/791:794 | No text annotation Not in a motif group | ||
| J3_5DOY_002 | 1/1A/698:700, 1/1A/732:736, 1/1A/760:763 | No text annotation Not in a motif group | ||
| J3_5DOY_004 | 1/1A/1298:1303, 1/1A/1625:1627, 1/1A/1639:1642 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
| J3_5DOY_005 | 1/1A/1306:1309, 1/1A/1605:1611, 1/1A/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_5DOY_006 | 1/1A/2091:2093, 1/1A/2196:2200, 1/1A/2223:2228 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_5DOY_007 | 1/1A/2295:2297, 1/1A/2321:2323, 1/1A/2332:2337 | No text annotation Not in a motif group | ||
| J3_5DOY_008 | 1/1A/2517:2520, 1/1A/2545:2547, 1/1A/2561:2567 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_5DOY_009 | 1/1A/2789:2791, 1/1A/2805:2811, 1/1A/2889:2894 | No text annotation Not in a motif group | homologous J3_7RQB_013 NA | |
| J3_5DOY_010 | 1/1a/826:829, 1/1a/857:861, 1/1a/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_5DOY_011 | 1/1a/936:939, 1/1a/1344:1350, 1/1a/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_5DOY_012 | 1/1a/943:946, 1/1a/1235:1237, 1/1a/1337:1340 | No text annotation Not in a motif group | ||
| J3_5DOY_013 | 1/1a/955:962, 1/1a/973:984, 1/1a/1221:1225 | No text annotation Not in a motif group | ||
| J3_5DOY_014 | 1/1a/990:993, 1/1a/1045:1047, 1/1a/1210:1215 | No text annotation Not in a motif group | ||
| J3_5DOY_015 | 1/1a/1002:1007, 1/1a/1022:1028, 1/1a/1033:1038 | No text annotation Not in a motif group | ||
| J3_5DOY_016 | 1/1a/1063:1068, 1/1a/1107:1113, 1/1a/1187:1193 | No text annotation Not in a motif group | ||
| J3_5DOY_017 | 1/1a/1116:1118, 1/1a/1155:1158, 1/1a/1181:1184 | No text annotation Not in a motif group | homologous J3_5J7L_010 NA | |
| J3_5DOY_018 | 1/1a/1237:1241, 1/1a/1296:1303, 1/1a/1334:1337 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA | |
| J3_5DOY_019 | 1/2A/683:689, 1/2A/773:775, 1/2A/791:794 | No text annotation Not in a motif group | homologous J3_7RQB_004 NA | |
| J3_5DOY_020 | 1/2A/698:700, 1/2A/732:736, 1/2A/760:763 | No text annotation Not in a motif group | ||
| J3_5DOY_021 | 1/2A/1298:1303, 1/2A/1625:1627, 1/2A/1639:1642 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
| J3_5DOY_022 | 1/2A/1306:1309, 1/2A/1605:1611, 1/2A/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_5DOY_023 | 1/2A/2091:2093, 1/2A/2196:2200, 1/2A/2223:2228 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_5DOY_024 | 1/2A/2295:2297, 1/2A/2321:2324, 1/2A/2331:2337 | No text annotation Not in a motif group | ||
| J3_5DOY_025 | 1/2A/2517:2520, 1/2A/2545:2547, 1/2A/2561:2567 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_5DOY_026 | 1/2a/826:829, 1/2a/857:861, 1/2a/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_5DOY_027 | 1/2a/936:939, 1/2a/1344:1350, 1/2a/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_5DOY_028 | 1/2a/943:946, 1/2a/1235:1237, 1/2a/1337:1340 | No text annotation Not in a motif group | homologous J3_5J7L_005 NA | |
| J3_5DOY_029 | 1/2a/955:962, 1/2a/973:984, 1/2a/1221:1225 | No text annotation Not in a motif group | ||
| J3_5DOY_030 | 1/2a/990:993, 1/2a/1045:1047, 1/2a/1210:1215 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
| J3_5DOY_031 | 1/2a/1002:1006, 1/2a/1023:1027, 1/2a/1034:1038 | No text annotation Not in a motif group | ||
| J3_5DOY_032 | 1/2a/1063:1068, 1/2a/1107:1113, 1/2a/1187:1193 | No text annotation Not in a motif group | ||
| J3_5DOY_033 | 1/2a/1116:1118, 1/2a/1155:1158, 1/2a/1181:1184 | No text annotation Not in a motif group | homologous J3_4LFB_008 NA | |
| J3_5DOY_034 | 1/2a/1237:1241, 1/2a/1296:1303, 1/2a/1334:1337 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5DOY_003 | No text annotation |
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