5GAF Internal, hairpin and 3-way junction loop motifs
Valid loops
# | loop id | location | motif |
---|---|---|---|
1 | ➜ | 1/1/38:43,1/1/66:68 | NA |
2 | ➜ | 1/1/45:50,1/1/59:64 | NA |
3 | ➜ | 1/A/24:30,1/A/510:516 | NA |
4 | ➜ | 1/A/36:37,1/A/442:444 | NA |
5 | ➜ | 1/A/43:44,1/A/434:436 | NA |
6 | ➜ | 1/A/81:85,1/A/97:105 | NA |
7 | ➜ | 1/A/136:138,1/A/141:143 | NA |
8 | ➜ | 1/A/183:184,1/A/212:214 | NA |
9 | ➜ | 1/A/188:194,1/A/201:208 | NA |
10 | ➜ | 1/A/239:245,1/A/253:258 | NA |
11 | ➜ | 1/A/269:271,1/A/366:370 | NA |
12 | ➜ | 1/A/274:281,1/A/359:363 | NA |
13 | ➜ | 1/A/285:287,1/A/353:355 | NA |
14 | ➜ | 1/A/293:295,1/A/343:347 | NA |
15 | ➜ | 1/A/481:484,1/A/496:509 | NA |
16 | ➜ | 1/A/536:539,1/A/554:557 | NA |
17 | ➜ | 1/A/564:566,1/A/575:577 | NA |
18 | ➜ | 1/A/606:610,1/A/618:622 | NA |
19 | ➜ | 1/A/672:674,1/A/806:808 | NA |
20 | ➜ | 1/A/674:678,1/A/799:806 | NA |
21 | ➜ | 1/A/697:698,1/A/763:765 | NA |
22 | ➜ | 1/A/702:703,1/A/728:730 | NA |
23 | ➜ | 1/A/703:707,1/A/724:728 | NA |
24 | ➜ | 1/A/738:740,1/A/757:758 | NA |
25 | ➜ | 1/A/775:777,1/A/787:791 | NA |
26 | ➜ | 1/A/837:838,1/A/940:942 | NA |
27 | ➜ | 1/A/844:847,1/A/933:934 | NA |
28 | ➜ | 1/A/847:848,1/A/930:933 | NA |
29 | ➜ | 1/A/850:851,1/A/926:928 | NA |
30 | ➜ | 1/A/856:862,1/A/915:921 | NA |
31 | ➜ | 1/A/862:863,1/A/913:915 | NA |
32 | ➜ | 1/A/864:868,1/A/909:912 | NA |
33 | ➜ | 1/A/870:872,1/A/905:907 | NA |
34 | ➜ | 1/A/875:879,1/A/898:902 | NA |
35 | ➜ | 1/A/879:882,1/A/894:898 | NA |
36 | ➜ | 1/A/994:996,1/A/1159:1160 | NA |
37 | ➜ | 1/A/998:1002,1/A/1153:1157 | NA |
38 | ➜ | 1/A/1004:1011,1/A/1150:1151 | NA |
39 | ➜ | 1/A/1011:1013,1/A/1149:1150 | NA |
40 | ➜ | 1/A/1018:1024,1/A/1140:1144 | NA |
41 | ➜ | 1/A/1024:1030,1/A/1124:1140 | NA |
42 | ➜ | 1/A/1031:1034,1/A/1121:1123 | NA |
43 | ➜ | 1/A/1038:1041,1/A/1114:1117 | NA |
44 | ➜ | 1/A/1043:1051,1/A/1108:1112 | NA |
45 | ➜ | 1/A/1059:1062,1/A/1076:1079 | NA |
46 | ➜ | 1/A/1087:1090,1/A/1101:1102 | NA |
47 | ➜ | 1/A/1196:1198,1/A/1247:1250 | NA |
48 | ➜ | 1/A/1202:1206,1/A/1240:1243 | NA |
49 | ➜ | 1/A/1208:1215,1/A/1234:1238 | NA |
50 | ➜ | 1/A/1262:1269,1/A/2011:2017 | NA |
51 | ➜ | 1/A/1310:1313,1/A/1603:1604 | NA |
52 | ➜ | 1/A/1319:1323,1/A/1331:1333 | NA |
53 | ➜ | 1/A/1351:1355,1/A/1376:1380 | NA |
54 | ➜ | 1/A/1357:1361,1/A/1370:1374 | NA |
55 | ➜ | 1/A/1415:1416,1/A/1582:1587 | NA |
56 | ➜ | 1/A/1417:1421,1/A/1577:1581 | NA |
57 | ➜ | 1/A/1432:1435,1/A/1557:1561 | NA |
58 | ➜ | 1/A/1437:1440,1/A/1551:1555 | NA |
59 | ➜ | 1/A/1450:1451,1/A/1459:1461 | NA |
60 | ➜ | 1/A/1468:1471,1/A/1520:1524 | NA |
61 | ➜ | 1/A/1474:1478,1/A/1513:1517 | NA |
62 | ➜ | 1/A/1481:1482,1/A/1507:1510 | NA |
63 | ➜ | 1/A/1489:1491,1/A/1499:1500 | NA |
64 | ➜ | 1/A/1526:1529,1/A/1542:1546 | NA |
65 | ➜ | 1/A/1651:1656,1/A/2004:2006 | NA |
66 | ➜ | 1/A/1663:1665,1/A/1995:1997 | NA |
67 | ➜ | 1/A/1666:1669,1/A/1993:1994 | NA |
68 | ➜ | 1/A/1669:1674,1/A/1990:1993 | NA |
69 | ➜ | 1/A/1686:1691,1/A/1696:1702 | NA |
70 | ➜ | 1/A/1712:1718,1/A/1742:1746 | NA |
71 | ➜ | 1/A/1720:1724,1/A/1736:1740 | NA |
72 | ➜ | 1/A/1770:1771,1/A/1980:1982 | NA |
73 | ➜ | 1/A/1798:1804,1/A/1813:1821 | NA |
74 | ➜ | 1/A/1837:1840,1/A/1902:1903 | NA |
75 | ➜ | 1/A/1841:1842,1/A/1898:1901 | NA |
76 | ➜ | 1/A/1846:1849,1/A/1893:1894 | NA |
77 | ➜ | 1/A/1864:1867,1/A/1874:1878 | NA |
78 | ➜ | 1/A/1933:1934,1/A/1964:1967 | NA |
79 | ➜ | 1/A/1934:1945,1/A/1961:1964 | NA |
80 | ➜ | 1/A/2050:2052,1/A/2617:2618 | NA |
81 | ➜ | 1/A/2054:2056,1/A/2612:2615 | NA |
82 | ➜ | 1/A/2067:2069,1/A/2442:2443 | NA |
83 | ➜ | 1/A/2070:2071,1/A/2438:2441 | NA |
84 | ➜ | 1/A/2081:2083,1/A/2236:2239 | NA |
85 | ➜ | 1/A/2085:2087,1/A/2232:2234 | NA |
86 | ➜ | 1/A/2102:2106,1/A/2183:2187 | NA |
87 | ➜ | 1/A/2106:2123,1/A/2175:2183 | NA |
88 | ➜ | 1/A/2124:2128,1/A/2160:2174 | NA |
89 | ➜ | 1/A/2129:2136,1/A/2155:2159 | NA |
90 | ➜ | 1/A/2202:2204,1/A/2220:2221 | NA |
91 | ➜ | 1/A/2297:2299,1/A/2317:2321 | NA |
92 | ➜ | 1/A/2350:2353,1/A/2364:2367 | NA |
93 | ➜ | 1/A/2401:2403,1/A/2414:2415 | NA |
94 | ➜ | 1/A/2453:2454,1/A/2498:2500 | NA |
95 | ➜ | 1/A/2454:2455,1/A/2496:2498 | NA |
96 | ➜ | 1/A/2457:2459,1/A/2493:2494 | NA |
97 | ➜ | 1/A/2459:2462,1/A/2488:2493 | NA |
98 | ➜ | 1/A/2466:2470,1/A/2480:2484 | NA |
99 | ➜ | 1/A/2507:2508,1/A/2580:2582 | NA |
100 | ➜ | 1/A/2510:2512,1/A/2574:2578 | NA |
101 | ➜ | 1/A/2512:2513,1/A/2571:2574 | NA |
102 | ➜ | 1/A/2522:2523,1/A/2540:2543 | NA |
103 | ➜ | 1/A/2591:2592,1/A/2601:2603 | NA |
104 | ➜ | 1/A/2636:2640,1/A/2774:2782 | NA |
105 | ➜ | 1/A/2652:2658,1/A/2663:2668 | NA |
106 | ➜ | 1/A/2680:2684,1/A/2725:2727 | NA |
107 | ➜ | 1/A/2687:2691,1/A/2718:2722 | NA |
108 | ➜ | 1/A/2695:2696,1/A/2711:2714 | NA |
109 | ➜ | 1/A/2737:2742,1/A/2762:2767 | NA |
110 | ➜ | 1/A/2795:2796,1/A/2799:2801 | NA |
111 | ➜ | 1/A/2806:2811,1/A/2889:2892 | NA |
112 | ➜ | 1/A/2838:2839,1/A/2878:2880 | NA |
113 | ➜ | 1/A/2843:2846,1/A/2870:2874 | NA |
114 | ➜ | 1/A/2847:2852,1/A/2865:2869 | NA |
115 | ➜ | 1/B/17:18,1/B/65:67 | NA |
116 | ➜ | 1/B/23:28,1/B/56:60 | NA |
117 | ➜ | 1/B/30:31,1/B/51:54 | NA |
118 | ➜ | 1/B/34:38,1/B/44:48 | NA |
119 | ➜ | 1/B/71:79,1/B/97:105 | NA |
Problematic loops
Valid loops
# | loop id | location | motif |
---|---|---|---|
1 | ➜ | 1/1/52:57 | NA |
2 | ➜ | 1/A/59:68 | NA |
3 | ➜ | 1/A/87:95 | NA |
4 | ➜ | 1/A/123:128 | NA |
5 | ➜ | 1/A/138:141 | NA |
6 | ➜ | 1/A/158:168 | NA |
7 | ➜ | 1/A/194:201 | NA |
8 | ➜ | 1/A/225:230 | NA |
9 | ➜ | 1/A/246:252 | NA |
10 | ➜ | 1/A/305:312 | NA |
11 | ➜ | 1/A/319:323 | NA |
12 | ➜ | 1/A/327:335 | NA |
13 | ➜ | 1/A/381:393 | NA |
14 | ➜ | 1/A/410:417 | NA |
15 | ➜ | 1/A/462:467 | NA |
16 | ➜ | 1/A/487:493 | NA |
17 | ➜ | 1/A/566:575 | NA |
18 | ➜ | 1/A/611:617 | NA |
19 | ➜ | 1/A/629:634 | NA |
20 | ➜ | 1/A/641:647 | NA |
21 | ➜ | 1/A/712:719 | NA |
22 | ➜ | 1/A/744:753 | NA |
23 | ➜ | 1/A/779:785 | NA |
24 | ➜ | 1/A/826:831 | NA |
25 | ➜ | 1/A/955:962 | NA |
26 | ➜ | 1/A/978:985 | NA |
27 | ➜ | 1/A/1064:1074 | NA |
28 | ➜ | 1/A/1092:1099 | NA |
29 | ➜ | 1/A/1172:1177 | NA |
30 | ➜ | 1/A/1222:1227 | NA |
31 | ➜ | 1/A/1281:1289 | NA |
32 | ➜ | 1/A/1324:1330 | NA |
33 | ➜ | 1/A/1363:1368 | NA |
34 | ➜ | 1/A/1389:1398 | NA |
35 | ➜ | 1/A/1451:1459 | NA |
36 | ➜ | 1/A/1492:1498 | NA |
37 | ➜ | 1/A/1533:1538 | NA |
38 | ➜ | 1/A/1565:1568 | NA |
39 | ➜ | 1/A/1612:1619 | NA |
40 | ➜ | 1/A/1630:1636 | NA |
41 | ➜ | 1/A/1691:1696 | NA |
42 | ➜ | 1/A/1727:1733 | NA |
43 | ➜ | 1/A/1752:1756 | NA |
44 | ➜ | 1/A/1777:1787 | NA |
45 | ➜ | 1/A/1806:1811 | NA |
46 | ➜ | 1/A/1868:1873 | NA |
47 | ➜ | 1/A/1910:1920 | NA |
48 | ➜ | 1/A/1949:1957 | NA |
49 | ➜ | 1/A/2027:2036 | NA |
50 | ➜ | 1/A/2143:2148 | NA |
51 | ➜ | 1/A/2209:2215 | NA |
52 | ➜ | 1/A/2248:2256 | NA |
53 | ➜ | 1/A/2264:2276 | NA |
54 | ➜ | 1/A/2303:2313 | NA |
55 | ➜ | 1/A/2324:2331 | NA |
56 | ➜ | 1/A/2356:2361 | NA |
57 | ➜ | 1/A/2374:2379 | NA |
58 | ➜ | 1/A/2404:2413 | NA |
59 | ➜ | 1/A/2471:2479 | NA |
60 | ➜ | 1/A/2528:2535 | NA |
61 | ➜ | 1/A/2551:2557 | NA |
62 | ➜ | 1/A/2594:2599 | NA |
63 | ➜ | 1/A/2658:2663 | NA |
64 | ➜ | 1/A/2701:2706 | NA |
65 | ➜ | 1/A/2745:2759 | NA |
66 | ➜ | 1/A/2796:2799 | NA |
67 | ➜ | 1/A/2819:2827 | NA |
68 | ➜ | 1/A/2856:2861 | NA |
69 | ➜ | 1/B/38:44 | NA |
70 | ➜ | 1/B/86:90 | NA |
Problematic loops
No problematic loops
Valid loops
# | loop id | location | motif |
---|---|---|---|
1 | ➜ | 1/A/683:689,1/A/773:775,1/A/791:794 | NA |
2 | ➜ | 1/A/698:700,1/A/732:736,1/A/760:763 | NA |
3 | ➜ | 1/A/1055:1057,1/A/1081:1087,1/A/1102:1104 | NA |
4 | ➜ | 1/A/1298:1303,1/A/1625:1627,1/A/1639:1642 | NA |
5 | ➜ | 1/A/1306:1309,1/A/1605:1611,1/A/1620:1622 | NA |
6 | ➜ | 1/A/2091:2093,1/A/2196:2200,1/A/2223:2228 | NA |
7 | ➜ | 1/A/2295:2297,1/A/2321:2323,1/A/2332:2337 | NA |
8 | ➜ | 1/A/2517:2520,1/A/2545:2547,1/A/2561:2567 | NA |
9 | ➜ | 1/A/2812:2815,1/A/2831:2836,1/A/2882:2888 | NA |
10 | ➜ | 1/B/10:16,1/B/68:70,1/B/106:110 | NA |
Problematic loops
No problematic loops
Coloring options: