5JCS Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/x/90:96 | NA | NA |
| 2 | ➜ | 1/x/132:136 | NA | NA |
| 3 | ➜ | 1/x/192:203 | NA | NA |
| 4 | ➜ | 1/x/216:225 | NA | NA |
| 5 | ➜ | 1/x/277:288 | NA | NA |
| 6 | ➜ | 1/x/300:315 | NA | NA |
| 7 | ➜ | 1/x/381:389 | NA | NA |
| 8 | ➜ | 1/x/531:561 | NA | NA |
| 9 | ➜ | 1/x/599:604 | NA | NA |
| 10 | ➜ | 1/x/686:694 | NA | NA |
| 11 | ➜ | 1/x/732:737 | NA | NA |
| 12 | ➜ | 1/x/758:773 | NA | NA |
| 13 | ➜ | 1/x/844:849 | NA | NA |
| 14 | ➜ | 1/x/876:885 | NA | NA |
| 15 | ➜ | 1/x/910:918 | NA | NA |
| 16 | ➜ | 1/x/958:963 | NA | NA |
| 17 | ➜ | 1/x/1020:1033 | NA | NA |
| 18 | ➜ | 1/x/1072:1086 | NA | NA |
| 19 | ➜ | 1/x/1125:1133 | NA | NA |
| 20 | ➜ | 1/x/1147:1156 | NA | NA |
| 21 | ➜ | 1/x/1232:1256 | NA | NA |
| 22 | ➜ | 1/x/1267:1274 | NA | NA |
| 23 | ➜ | 1/x/1342:1362 | NA | NA |
| 24 | ➜ | 1/x/1403:1408 | NA | NA |
| 25 | ➜ | 1/x/1461:1471 | NA | NA |
| 26 | ➜ | 1/x/1500:1516 | NA | NA |
| 27 | ➜ | 1/x/1544:1549 | NA | NA |
| 28 | ➜ | 1/x/1564:1576 | NA | NA |
| 29 | ➜ | 1/x/1597:1610 | NA | NA |
| 30 | ➜ | 1/x/1679:1689 | NA | NA |
| 31 | ➜ | 1/x/1719:1725 | NA | NA |
| 32 | ➜ | 1/x/1861:1869 | NA | NA |
| 33 | ➜ | 1/x/1923:1928 | NA | NA |
| 34 | ➜ | 1/x/2007:2014 | NA | NA |
| 35 | ➜ | 1/x/2065:2071 | NA | NA |
| 36 | ➜ | 1/x/2134:2146 | NA | NA |
| 37 | ➜ | 1/x/2163:2171 | NA | NA |
| 38 | ➜ | 1/x/2217:2229 | NA | NA |
| 39 | ➜ | 1/x/2253:2263 | NA | NA |
| 40 | ➜ | 1/x/2292:2300 | NA | NA |
| 41 | ➜ | 1/x/2567:2574 | NA | NA |
| 42 | ➜ | 1/x/2672:2682 | NA | NA |
| 43 | ➜ | 1/x/2723:2733 | NA | NA |
| 44 | ➜ | 1/x/2742:2751 | NA | NA |
| 45 | ➜ | 1/x/2770:2788 | NA | NA |
| 46 | ➜ | 1/x/2831:2857 | NA | NA |
| 47 | ➜ | 1/x/2895:2906 | NA | NA |
| 48 | ➜ | 1/x/2918:2928 | NA | NA |
| 49 | ➜ | 1/x/2963:2968 | NA | NA |
| 50 | ➜ | 1/x/3025:3030 | NA | NA |
| 51 | ➜ | 1/x/3065:3076 | NA | NA |
| 52 | ➜ | 1/x/3102:3133 | NA | NA |
| 53 | ➜ | 1/x/3193:3199 | NA | NA |
| 54 | ➜ | 1/x/3240:3247 | NA | NA |
| 55 | ➜ | 1/x/3338:3366 | NA | NA |
| 56 | ➜ | 1/y/47:56 | NA | NA |
| 57 | ➜ | 1/y/69:89 | NA | NA |
| 58 | ➜ | 1/y/108:114 | NA | NA |
| 59 | ➜ | 1/y/123:130 | NA | NA |
| 60 | ➜ | 1/z/32:45 | NA | NA |
| 61 | ➜ | 1/z/88:93 | NA | NA |
Problematic loops
No problematic loops
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/x/379:381,1/x/389:390 | NA | NA |
| 2 | ➜ | 1/x/429:431,1/x/628:630 | NA | NA |
| 3 | ➜ | 1/x/512:516,1/x/574:579 | NA | NA |
| 4 | ➜ | 1/x/516:525,1/x/568:574 | NA | NA |
| 5 | ➜ | 1/x/525:526,1/x/566:568 | NA | NA |
| 6 | ➜ | 1/x/667:670,1/x/792:795 | NA | NA |
| 7 | ➜ | 1/x/724:730,1/x/740:746 | NA | NA |
| 8 | ➜ | 1/x/730:732,1/x/737:740 | NA | NA |
| 9 | ➜ | 1/x/755:757,1/x/774:777 | NA | NA |
| 10 | ➜ | 1/x/803:810,1/x/930:940 | NA | NA |
| 11 | ➜ | 1/x/868:873,1/x/887:891 | NA | NA |
| 12 | ➜ | 1/x/873:876,1/x/885:887 | NA | NA |
| 13 | ➜ | 1/x/1117:1125,1/x/1133:1141 | NA | NA |
| 14 | ➜ | 1/x/1376:1381,1/x/1425:1431 | NA | NA |
| 15 | ➜ | 1/x/1384:1387,1/x/1420:1422 | NA | NA |
| 16 | ➜ | 1/x/1387:1396,1/x/1414:1420 | NA | NA |
| 17 | ➜ | 1/x/1398:1400,1/x/1411:1412 | NA | NA |
| 18 | ➜ | 1/x/1616:1621,1/x/1824:1828 | NA | NA |
| 19 | ➜ | 1/x/1661:1665,1/x/1784:1788 | NA | NA |
| 20 | ➜ | 1/x/1665:1671,1/x/1776:1784 | NA | NA |
| 21 | ➜ | 1/x/1702:1708,1/x/1736:1743 | NA | NA |
| 22 | ➜ | 1/x/1709:1718,1/x/1726:1735 | NA | NA |
| 23 | ➜ | 1/x/1916:1923,1/x/1928:1936 | NA | NA |
| 24 | ➜ | 1/x/1981:1983,1/x/2038:2041 | NA | NA |
| 25 | ➜ | 1/x/1987:1991,1/x/2030:2034 | NA | NA |
| 26 | ➜ | 1/x/1991:2001,1/x/2020:2030 | NA | NA |
| 27 | ➜ | 1/x/2152:2163,1/x/2171:2184 | NA | NA |
| 28 | ➜ | 1/x/2204:2206,1/x/2237:2238 | NA | NA |
| 29 | ➜ | 1/x/2206:2210,1/x/2235:2237 | NA | NA |
| 30 | ➜ | 1/x/2210:2217,1/x/2229:2235 | NA | NA |
| 31 | ➜ | 1/x/2277:2290,1/x/2302:2307 | NA | NA |
| 32 | ➜ | 1/x/2422:2427,1/x/2603:2608 | NA | NA |
| 33 | ➜ | 1/x/2719:2722,1/x/2734:2738 | NA | NA |
| 34 | ➜ | 1/x/2879:2881,1/x/2943:2947 | NA | NA |
| 35 | ➜ | 1/x/2881:2883,1/x/2939:2943 | NA | NA |
| 36 | ➜ | 1/x/2959:2961,1/x/2970:2973 | NA | NA |
| 37 | ➜ | 1/x/3045:3046,1/x/3095:3097 | NA | NA |
| 38 | ➜ | 1/x/3046:3053,1/x/3089:3095 | NA | NA |
| 39 | ➜ | 1/x/3054:3060,1/x/3083:3088 | NA | NA |
| 40 | ➜ | 1/x/3063:3065,1/x/3076:3080 | NA | NA |
| 41 | ➜ | 1/x/3161:3168,1/x/3283:3289 | NA | NA |
| 42 | ➜ | 1/x/3222:3233,1/x/3254:3263 | NA | NA |
| 43 | ➜ | 1/x/3233:3235,1/x/3252:3254 | NA | NA |
| 44 | ➜ | 1/x/3235:3238,1/x/3249:3252 | NA | NA |
| 45 | ➜ | 1/x/3298:3321,1/x/3386:3390 | NA | NA |
| 46 | ➜ | 1/x/3323:3331,1/x/3372:3384 | NA | NA |
| 47 | ➜ | 1/x/3331:3338,1/x/3366:3372 | NA | NA |
| 48 | ➜ | 1/y/66:69,1/y/89:93 | NA | NA |
| 49 | ➜ | 1/z/20:26,1/z/57:59 | NA | NA |
| 50 | ➜ | 1/z/26:31,1/z/46:57 | NA | NA |
| 51 | ➜ | 1/z/82:87,1/z/94:98 | NA | NA |
Problematic loops
No problematic loops
Coloring options: