5JUS | Motifs

119 Hairpin loops
226 Internal loops
32 Junction loops

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	HL_5JUS_001	1/A/7:17	homologous HL_4V88_186	NA HL_67265.4*
2	HL_5JUS_002	1/A/70:81	NA	NA
3	HL_5JUS_003	1/A/154:160	Other HL homologous HL_4V88_188	NA HL_43074.18*
4	HL_5JUS_004	1/A/190:195	geometric HL_1WZ2_007	NA HL_05692.1*
5	HL_5JUS_005	1/A/230:235	NA	NA
6	HL_5JUS_006	1/A/243:250	T-loop with 1 bulged base homologous HL_4V88_191	NA HL_68493.6*
7	HL_5JUS_007	1/A/276:279	geometric HL_6U8D_003	NA HL_18722.3*
8	HL_5JUS_008	1/A/330:338	homologous HL_4V88_193	NA HL_93727.5*
9	HL_5JUS_009	1/A/368:373	homologous HL_4V88_194	NA HL_18785.1*
10	HL_5JUS_010	1/A/393:404	homologous HL_4V88_195	NA HL_22443.1*
11	HL_5JUS_011	1/A/414:419	UNCG homologous HL_4V88_196	NA HL_79299.11*
12	HL_5JUS_012	1/A/450:456	homologous HL_4V88_197	NA HL_50374.1*
13	HL_5JUS_013	1/A/487:500	NA	NA
14	HL_5JUS_014	1/A/520:532	homologous HL_4V88_199	NA HL_17086.2*
15	HL_5JUS_015	1/A/569:574	Other HL homologous HL_4V88_200	NA HL_43074.18*
16	HL_5JUS_017	1/A/764:772	homologous HL_4V88_203	NA HL_72066.1*
17	HL_5JUS_018	1/A/777:783	NA	NA
18	HL_5JUS_019	1/A/829:843	homologous HL_4V88_205	NA HL_03603.1*
19	HL_5JUS_021	1/A/937:942	Other HL homologous HL_4V88_207	NA HL_43074.18*
20	HL_5JUS_022	1/A/1055:1064	NA	NA
21	HL_5JUS_023	1/A/1084:1089	Other HL homologous HL_4V88_210	NA HL_43074.18*
22	HL_5JUS_024	1/A/1121:1126	GNRA homologous HL_4V88_211	NA HL_43074.18*
23	HL_5JUS_025	1/A/1188:1197	homologous HL_4V88_212	NA HL_96854.1*
24	HL_5JUS_026	1/A/1238:1247	homologous HL_4V88_213	NA HL_30819.1*
25	HL_5JUS_027	1/A/1296:1301	GNRA homologous HL_4V88_214	NA HL_43074.18*
26	HL_5JUS_028	1/A/1309:1316	homologous HL_4V88_215	NA HL_54035.7*
27	HL_5JUS_029	1/A/1359:1364	geometric HL_4V88_198	NA HL_30541.1*
28	HL_5JUS_030	1/A/1396:1402	homologous HL_4V88_217	NA HL_67216.5*
29	HL_5JUS_031	1/A/1501:1506	GNRA homologous HL_4V88_218	NA HL_43074.18*
30	HL_5JUS_032	1/A/1549:1562	NA	NA
31	HL_5JUS_033	1/A/1594:1602	homologous HL_4V88_220	NA HL_01181.4*
32	HL_5JUS_036	1/B/38:45	geometric HL_4WF9_006	NA HL_23481.5*
33	HL_5JUS_037	1/B/69:74	homologous HL_5TBW_002	NA HL_96776.3*
34	HL_5JUS_038	1/B/90:96	homologous HL_5TBW_003	NA HL_67216.5*
35	HL_5JUS_039	1/B/132:136	homologous HL_5TBW_004	NA HL_36982.3*
36	HL_5JUS_040	1/B/194:201	T-loop with 1 bulged base homologous HL_5TBW_005	NA HL_68493.6*
37	HL_5JUS_041	1/B/208:212	homologous HL_5TBW_006	NA HL_98557.5*
38	HL_5JUS_042	1/B/216:224	homologous HL_5TBW_007	NA HL_08002.6*
39	HL_5JUS_043	1/B/278:287	homologous HL_5TBW_008	NA HL_54035.7*
40	HL_5JUS_044	1/B/303:312	homologous HL_5TBW_009	NA HL_46142.8*
41	HL_5JUS_045	1/B/357:362	Other HL homologous HL_5TBW_010	NA HL_43074.18*
42	HL_5JUS_046	1/B/382:387	GNRA homologous HL_5TBW_011	NA HL_43074.18*
43	HL_5JUS_048	1/B/541:550	NA	NA
44	HL_5JUS_049	1/B/599:604	GNRA homologous HL_5TBW_013	NA HL_43074.18*
45	HL_5JUS_050	1/B/640:649	T-loop with 2 stacked bulged bases homologous HL_5TBW_014	NA HL_33239.17*
46	HL_5JUS_051	1/B/686:694	homologous HL_5TBW_015	NA HL_80105.3*
47	HL_5JUS_052	1/B/707:712	GNRA homologous HL_5TBW_016	NA HL_43074.18*
48	HL_5JUS_053	1/B/732:737	GNRA homologous HL_5TBW_017	NA HL_43074.18*
49	HL_5JUS_054	1/B/763:768	geometric HL_5TBW_018	NA HL_00996.1*
50	HL_5JUS_055	1/B/844:849	GNRA homologous HL_5TBW_019	NA HL_43074.18*
51	HL_5JUS_056	1/B/876:885	homologous HL_5TBW_020	NA HL_39334.5*
52	HL_5JUS_057	1/B/910:918	homologous HL_5TBW_021	NA HL_05832.1*
53	HL_5JUS_058	1/B/958:963	homologous HL_5TBW_022	NA HL_15942.5*
54	HL_5JUS_059	1/B/1023:1029	GNRA homologous HL_5TBW_023	NA HL_43074.18*
55	HL_5JUS_060	1/B/1076:1083	homologous HL_5TBW_024	NA HL_54035.7*
56	HL_5JUS_061	1/B/1126:1132	GNRA homologous HL_5TBW_025	NA HL_43074.18*
57	HL_5JUS_062	1/B/1148:1155	homologous HL_5TBW_026	NA HL_72451.5*
58	HL_5JUS_063	1/B/1239:1249	homologous HL_5TBW_027	NA HL_92304.3*
59	HL_5JUS_064	1/B/1267:1274	geometric HL_1MMS_002	NA HL_93727.5*
60	HL_5JUS_065	1/B/1347:1357	NA	NA
61	HL_5JUS_066	1/B/1403:1408	GNRA homologous HL_5TBW_030	NA HL_43074.18*
62	HL_5JUS_067	1/B/1462:1470	T-loop with 2 stacked bulged bases homologous HL_5TBW_031	NA HL_33239.17*
63	HL_5JUS_068	1/B/1506:1512	homologous HL_5TBW_032	NA HL_86880.5*
64	HL_5JUS_069	1/B/1544:1549	Other HL homologous HL_5TBW_033	NA HL_43074.18*
65	HL_5JUS_070	1/B/1566:1572	NA	NA
66	HL_5JUS_071	1/B/1599:1608	homologous HL_5TBW_035	NA HL_78457.4*
67	HL_5JUS_072	1/B/1634:1639	GNRA homologous HL_5TBW_036	NA HL_43074.18*
68	HL_5JUS_073	1/B/1680:1688	homologous HL_5TBW_037	NA HL_73793.2*
69	HL_5JUS_074	1/B/1719:1725	homologous HL_5TBW_038	NA HL_00923.1*
70	HL_5JUS_075	1/B/1759:1766	geometric HL_1WZ2_007	NA HL_05692.1*
71	HL_5JUS_076	1/B/1792:1796	homologous HL_5TBW_040	NA HL_69353.7*
72	HL_5JUS_077	1/B/1844:1851	homologous HL_5TBW_041	NA HL_66171.3*
73	HL_5JUS_078	1/B/1862:1868	GNRA with one bulged base homologous HL_5TBW_042	NA HL_02361.6*
74	HL_5JUS_079	1/B/1923:1928	UNCG homologous HL_5TBW_043	NA HL_79299.11*
75	HL_5JUS_081	1/B/2110:2114	homologous HL_5TBW_045	NA HL_99223.1*
76	HL_5JUS_082	1/B/2135:2145	homologous HL_5TBW_046	NA HL_43613.4*
77	HL_5JUS_083	1/B/2164:2170	GNRA homologous HL_5TBW_047	NA HL_43074.18*
78	HL_5JUS_084	1/B/2220:2225	Other HL homologous HL_5TBW_048	NA HL_43074.18*
79	HL_5JUS_085	1/B/2253:2263	homologous HL_5TBW_049	NA HL_98248.1*
80	HL_5JUS_086	1/B/2292:2300	homologous HL_5TBW_050	NA HL_53760.4*
81	HL_5JUS_087	1/B/2369:2378	homologous HL_5TBW_051	NA HL_90642.5*
82	HL_5JUS_088	1/B/2459:2487	NA	NA
83	HL_5JUS_089	1/B/2535:2544	NA	NA
84	HL_5JUS_090	1/B/2568:2573	NA	NA
85	HL_5JUS_091	1/B/2616:2624	homologous HL_5TBW_054	NA HL_46891.3*
86	HL_5JUS_092	1/B/2633:2645	homologous HL_5TBW_055	NA HL_19870.5*
87	HL_5JUS_093	1/B/2673:2681	homologous HL_5TBW_056	NA HL_76406.3*
88	HL_5JUS_094	1/B/2693:2700	homologous HL_5TBW_057	NA HL_46142.8*
89	HL_5JUS_095	1/B/2724:2732	homologous HL_5TBW_058	NA HL_14725.1*
90	HL_5JUS_096	1/B/2744:2749	GNRA homologous HL_5TBW_059	NA HL_43074.18*
91	HL_5JUS_097	1/B/2776:2784	homologous HL_5TBW_060	NA HL_46142.8*
92	HL_5JUS_098	1/B/2840:2848	homologous HL_5TBW_061	NA HL_36421.5*
93	HL_5JUS_099	1/B/2896:2905	NA	NA
94	HL_5JUS_100	1/B/2920:2926	geometric HL_5TBW_063	NA HL_26055.6*
95	HL_5JUS_101	1/B/2963:2968	GNRA homologous HL_5TBW_064	NA HL_43074.18*
96	HL_5JUS_102	1/B/3025:3030	GNRA geometric HL_5J7L_010	NA HL_43074.18*
97	HL_5JUS_103	1/B/3067:3074	geometric HL_3R4F_002	NA HL_46891.3*
98	HL_5JUS_104	1/B/3110:3124	homologous HL_5TBW_067	NA HL_56677.5*
99	HL_5JUS_105	1/B/3194:3197	NA	NA
100	HL_5JUS_106	1/B/3240:3247	homologous HL_5TBW_069	NA HL_27757.1*
101	HL_5JUS_107	1/B/3303:3311	geometric HL_5TBW_070	NA HL_05018.6*
102	HL_5JUS_108	1/B/3350:3353	geometric HL_5F9R_002	NA HL_69353.7*
103	HL_5JUS_109	1/C/47:56	geometric HL_7A0S_001	NA HL_29414.1*
104	HL_5JUS_110	1/C/68:91	NA	NA
105	HL_5JUS_111	1/C/108:114	homologous HL_5TBW_075	NA HL_06569.2*
106	HL_5JUS_112	1/C/124:129	homologous HL_5TBW_076	NA HL_60357.1*
107	HL_5JUS_113	1/D/36:41	NA	NA
108	HL_5JUS_114	1/D/88:93	NA	NA
109	HL_5JUS_117	1/EC/6862:6868	NA	NA
110	HL_5JUS_118	1/EC/6902:6911	NA	NA
111	HL_5JUS_119	1/EC/6924:6929	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_5JUS_016	incomplete nts	NA
2	HL_5JUS_020	incomplete nts	NA
3	HL_5JUS_034	incomplete nts	NA
4	HL_5JUS_035	incomplete nts	NA
5	HL_5JUS_047	missing nts	NA
6	HL_5JUS_080	missing nts	NA
7	HL_5JUS_115	incomplete nts	NA
8	HL_5JUS_116	incomplete nts	NA

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	IL_5JUS_001	1/A/24:26, 1/A/600:601	Single bulged C homologous IL_4V88_384	NA IL_61258.10*
2	IL_5JUS_002	1/A/37:41, 1/A/466:471	homologous IL_4V88_386	NA IL_53318.1*
3	IL_5JUS_003	1/A/42:48, 1/A/431:433	homologous IL_4V88_387	NA IL_34626.4*
4	IL_5JUS_004	1/A/50:52, 1/A/428:429	Minor groove platform homologous IL_4V88_388	NA IL_06437.11*
5	IL_5JUS_005	1/A/58:63, 1/A/87:89	homologous IL_4V88_389	NA IL_96451.1*
6	IL_5JUS_006	1/A/64:69, 1/A/82:86	homologous IL_4V88_390	NA IL_59423.1*
7	IL_5JUS_007	1/A/109:112, 1/A/302:305	Tandem non-canonical cWW pairs homologous IL_4V88_391	NA IL_85877.10*
8	IL_5JUS_008	1/A/113:116, 1/A/300:301	Multiple bulged bases homologous IL_4V88_392	NA IL_13730.12*
9	IL_5JUS_009	1/A/117:122, 1/A/295:299	homologous IL_4V88_393	NA IL_76386.1*
10	IL_5JUS_010	1/A/144:149, 1/A/165:171	tWH-tWH-tHW-tHW geometric IL_4LFB_009	NA IL_87677.1*
11	IL_5JUS_011	1/A/149:153, 1/A/161:165	geometric IL_5TBW_121	NA IL_05867.1*
12	IL_5JUS_012	1/A/186:189, 1/A/196:199	Double sheared homologous IL_4V88_396	NA IL_09705.7*
13	IL_5JUS_013	1/A/204:206, 1/A/259:263	Major groove platform with extra cWW geometric IL_7RQB_022	NA IL_95485.6*
14	IL_5JUS_014	1/A/206:208, 1/A/257:259	homologous IL_4V88_398	NA IL_01312.13*
15	IL_5JUS_015	1/A/265:267, 1/A/288:289	Single bulged A homologous IL_4V88_399	NA IL_80007.16*
16	IL_5JUS_016	1/A/270:273, 1/A/283:285	homologous IL_4V88_400	NA IL_05922.1*
17	IL_5JUS_017	1/A/274:276, 1/A/279:282	geometric IL_4V83_235	NA IL_01312.13*
18	IL_5JUS_018	1/A/311:316, 1/A/348:355	Kink-turn with non-sequential stacking homologous IL_4V88_402	NA IL_29549.9*
19	IL_5JUS_019	1/A/318:323, 1/A/345:346	homologous IL_4V88_403	NA IL_55658.1*
20	IL_5JUS_020	1/A/363:365, 1/A/376:381	homologous IL_4V88_404	NA IL_46732.1*
21	IL_5JUS_021	1/A/389:391, 1/A/406:408	Isolated cWH basepair homologous IL_4V88_405	NA IL_42589.6*
22	IL_5JUS_022	1/A/411:413, 1/A/420:422	Isolated near basepair homologous IL_4V88_406	NA IL_01312.13*
23	IL_5JUS_023	1/A/439:441, 1/A/463:464	Single bulged U homologous IL_4V88_407	NA IL_83039.11*
24	IL_5JUS_024	1/A/443:447, 1/A/460:461	C-loop geometric IL_5J7L_018	NA IL_08376.2*
25	IL_5JUS_025	1/A/447:448, 1/A/458:460	Single bulged G geometric IL_5J7L_019	NA IL_59137.10*
26	IL_5JUS_026	1/A/480:483, 1/A/504:508	NA	NA
27	IL_5JUS_027	1/A/517:518, 1/A/533:535	Minor groove platform geometric IL_4V88_388	NA IL_06437.11*
28	IL_5JUS_028	1/A/518:520, 1/A/532:533	Minor groove platform geometric IL_4V88_388	NA IL_06437.11*
29	IL_5JUS_029	1/A/550:557, 1/A/587:588	SSU/LSU pseudoknot geometric IL_4V88_413	NA IL_15861.6*
30	IL_5JUS_030	1/A/557:559, 1/A/586:587	Single bulged U geometric IL_7RQB_080	NA IL_83039.11*
31	IL_5JUS_031	1/A/562:568, 1/A/575:583	homologous IL_4V88_415	NA IL_04667.1*
32	IL_5JUS_032	1/A/624:626, 1/A/973:975	homologous IL_4V88_417	NA IL_01312.13*
33	IL_5JUS_033	1/A/627:631, 1/A/968:972	tSH-tHW-tHS homologous IL_4V88_418	NA IL_39521.5*
34	IL_5JUS_034	1/A/646:648, 1/A/686:688	homologous IL_4V88_419	NA IL_01312.13*
35	IL_5JUS_035	1/A/651:658, 1/A/676:683	NA	NA
36	IL_5JUS_036	1/A/746:747, 1/A/802:805	Major groove minor groove platform; mini C-loop homologous IL_4V88_423	NA IL_09061.4*
37	IL_5JUS_037	1/A/748:750, 1/A/799:801	homologous IL_4V88_424	NA IL_01312.13*
38	IL_5JUS_038	1/A/751:759, 1/A/791:798	homologous IL_4V88_425	NA IL_69091.1*
39	IL_5JUS_039	1/A/817:822, 1/A/850:854	NA	NA
40	IL_5JUS_040	1/A/865:866, 1/A/962:965	Major groove platform; stack outside cWW homologous IL_4V88_428	NA IL_70995.6*
41	IL_5JUS_041	1/A/867:870, 1/A/957:961	Tandem non-canonical cWW pairs homologous IL_4V88_429	NA IL_85877.10*
42	IL_5JUS_042	1/A/871:873, 1/A/954:956	geometric IL_6CZR_171	NA IL_01312.13*
43	IL_5JUS_043	1/A/874:878, 1/A/950:953	Tandem non-canonical cWW pairs homologous IL_4V88_431	NA IL_85877.10*
44	IL_5JUS_044	1/A/885:888, 1/A/924:927	Tandem non-canonical cWW pairs homologous IL_4V88_432	NA IL_85877.10*
45	IL_5JUS_045	1/A/1034:1036, 1/A/1095:1101	homologous IL_4V88_437	NA IL_19557.1*
46	IL_5JUS_046	1/A/1041:1044, 1/A/1074:1077	Tandem non-canonical cWW pairs homologous IL_4V88_438	NA IL_85877.10*
47	IL_5JUS_047	1/A/1051:1053, 1/A/1066:1067	NA	NA
48	IL_5JUS_048	1/A/1111:1118, 1/A/1129:1134	8x6 Sarcin-Ricin with inserted Y; G-bulge homologous IL_4V88_440	NA IL_24606.1*
49	IL_5JUS_049	1/A/1146:1147, 1/A/1630:1632	Single bulged A homologous IL_4V88_441	NA IL_80007.16*
50	IL_5JUS_050	1/A/1149:1151, 1/A/1627:1628	Single bulged G homologous IL_4V88_442	NA IL_59137.10*
51	IL_5JUS_051	1/A/1157:1160, 1/A/1617:1621	C-loop homologous IL_4V88_443	NA IL_63596.4*
52	IL_5JUS_052	1/A/1173:1175, 1/A/1464:1466	homologous IL_4V88_444	NA IL_01312.13*
53	IL_5JUS_053	1/A/1178:1179, 1/A/1459:1461	Minor groove platform homologous IL_4V88_445	NA IL_06437.11*
54	IL_5JUS_054	1/A/1213:1215, 1/A/1448:1450	homologous IL_4V88_446	NA IL_01312.13*
55	IL_5JUS_055	1/A/1224:1230, 1/A/1257:1259	NA	NA
56	IL_5JUS_056	1/A/1230:1233, 1/A/1252:1257	NA	NA
57	IL_5JUS_057	1/A/1234:1237, 1/A/1248:1251	NA	NA
58	IL_5JUS_058	1/A/1268:1270, 1/A/1440:1441	Single bulged U homologous IL_4V88_449	NA IL_83039.11*
59	IL_5JUS_059	1/A/1272:1276, 1/A/1436:1438	NA	NA
60	IL_5JUS_060	1/A/1276:1278, 1/A/1430:1436	Minor groove platform with extra cWW homologous IL_4V88_451	NA IL_09768.1*
61	IL_5JUS_061	1/A/1280:1281, 1/A/1426:1428	Single bulged A homologous IL_4V88_452	NA IL_80007.16*
62	IL_5JUS_062	1/A/1290:1292, 1/A/1323:1325	Isolated cWH basepair homologous IL_4V88_453	NA IL_42589.6*
63	IL_5JUS_063	1/A/1306:1308, 1/A/1317:1318	Minor groove platform homologous IL_4V88_454	NA IL_06437.11*
64	IL_5JUS_064	1/A/1339:1342, 1/A/1383:1385	homologous IL_4V88_455	NA IL_01312.13*
65	IL_5JUS_065	1/A/1345:1348, 1/A/1377:1380	Minor groove platform homologous IL_4V88_456	NA IL_69507.1*
66	IL_5JUS_066	1/A/1352:1355, 1/A/1368:1373	NA	NA
67	IL_5JUS_067	1/A/1389:1391, 1/A/1407:1412	Major groove platform; stack outside cWW homologous IL_4V88_458	NA IL_60171.1*
68	IL_5JUS_068	1/A/1480:1487, 1/A/1519:1527	homologous IL_4V88_459	NA IL_69573.1*
69	IL_5JUS_069	1/A/1488:1494, 1/A/1513:1518	homologous IL_4V88_460	NA IL_75461.2*
70	IL_5JUS_070	1/A/1495:1498, 1/A/1509:1512	Tandem non-canonical cWW pairs homologous IL_4V88_461	NA IL_85877.10*
71	IL_5JUS_071	1/A/1540:1546, 1/A/1565:1571	NA	NA
72	IL_5JUS_072	1/A/1636:1638, 1/A/1764:1767	NA	NA
73	IL_5JUS_073	1/A/1638:1641, 1/A/1760:1764	homologous IL_4V88_464	NA IL_59281.1*
74	IL_5JUS_074	1/A/1642:1644, 1/A/1757:1759	geometric IL_4LFB_063	NA IL_01312.13*
75	IL_5JUS_075	1/A/1644:1647, 1/A/1753:1757	NA	NA
76	IL_5JUS_076	1/A/1650:1652, 1/A/1748:1750	AA cWW homologous IL_4V88_467	NA IL_01312.13*
77	IL_5JUS_077	1/A/1653:1656, 1/A/1744:1747	Double sheared geometric IL_4V9F_100	NA IL_09705.7*
78	IL_5JUS_078	1/A/1656:1659, 1/A/1742:1744	Isolated cWS basepair geometric IL_5TBW_047	NA IL_67621.5*
79	IL_5JUS_079	1/A/1665:1667, 1/A/1734:1736	homologous IL_4V88_470	NA IL_01312.13*
80	IL_5JUS_080	1/A/1669:1672, 1/A/1729:1732	Double sheared homologous IL_4V88_471	NA IL_09705.7*
81	IL_5JUS_081	1/A/1672:1674, 1/A/1727:1729	geometric IL_5TBW_068	NA IL_01312.13*
82	IL_5JUS_082	1/A/1675:1678, 1/A/1723:1726	Tandem non-canonical cWW pairs homologous IL_4V88_473	NA IL_85877.10*
83	IL_5JUS_083	1/A/1678:1682, 1/A/1719:1723	Triple sheared geometric IL_4V88_474	NA IL_56467.6*
84	IL_5JUS_084	1/B/4:9, 1/C/149:155	NA	NA
85	IL_5JUS_085	1/B/10:15, 1/C/144:148	NA	NA
86	IL_5JUS_086	1/B/27:28, 1/B/56:58	Single stack bend homologous IL_5TBW_004	NA IL_04038.4*
87	IL_5JUS_087	1/B/31:38, 1/B/45:53	tSH-tHW-tHH-tHS homologous IL_5TBW_005	NA IL_22863.1*
88	IL_5JUS_088	1/B/82:89, 1/B/97:103	homologous IL_5TBW_006	NA IL_29509.1*
89	IL_5JUS_089	1/B/123:124, 1/B/144:149	homologous IL_5TBW_007	NA IL_19724.1*
90	IL_5JUS_090	1/B/125:127, 1/B/141:143	homologous IL_5TBW_008	NA IL_01312.13*
91	IL_5JUS_091	1/B/163:166, 1/B/256:258	NA	NA
92	IL_5JUS_092	1/B/169:170, 1/B/248:253	homologous IL_5TBW_010	NA IL_76195.1*
93	IL_5JUS_093	1/B/176:179, 1/B/237:242	NA	NA
94	IL_5JUS_094	1/B/189:191, 1/B/204:205	Single bulged U homologous IL_5TBW_012	NA IL_83039.11*
95	IL_5JUS_095	1/B/337:339, 1/C/25:26	Single bulged A homologous IL_5TBW_013	NA IL_80007.16*
96	IL_5JUS_096	1/B/376:379, 1/B/390:403	homologous IL_5TBW_014	NA IL_60992.5*
97	IL_5JUS_097	1/B/404:411, 1/C/12:19	NA	NA
98	IL_5JUS_098	1/B/429:431, 1/B/628:630	homologous IL_5TBW_016	NA IL_01312.13*
99	IL_5JUS_099	1/B/445:452, 1/B/484:489	NA	NA
100	IL_5JUS_100	1/B/512:513, 1/B/577:579	Single bulged A homologous IL_5TBW_018	NA IL_40508.4*
101	IL_5JUS_101	1/B/517:525, 1/B/567:573	homologous IL_5TBW_019	NA IL_41593.1*
102	IL_5JUS_102	1/B/531:538, 1/B/553:561	homologous IL_5TBW_020	NA IL_94501.1*
103	IL_5JUS_103	1/B/668:670, 1/B/792:794	homologous IL_5TBW_021	NA IL_01312.13*
104	IL_5JUS_104	1/B/680:684, 1/B/696:700	homologous IL_5TBW_022	NA IL_92343.1*
105	IL_5JUS_105	1/B/725:728, 1/B/741:745	UAA/GAN homologous IL_5TBW_023	NA IL_53523.5*
106	IL_5JUS_106	1/B/752:753, 1/B/779:781	Single bulged A homologous IL_5TBW_024	NA IL_80007.16*
107	IL_5JUS_107	1/B/755:756, 1/B/775:777	Single bulged U homologous IL_5TBW_025	NA IL_83039.11*
108	IL_5JUS_108	1/B/758:763, 1/B/768:773	homologous IL_5TBW_026	NA IL_19954.1*
109	IL_5JUS_109	1/B/803:805, 1/B/938:940	homologous IL_5TBW_027	NA IL_01312.13*
110	IL_5JUS_110	1/B/805:809, 1/B/931:938	geometric IL_5TBW_028	NA IL_17470.5*
111	IL_5JUS_111	1/B/833:834, 1/B/859:861	Single bulged G homologous IL_5TBW_029	NA IL_99645.1*
112	IL_5JUS_112	1/B/834:838, 1/B/855:859	Triple sheared geometric IL_4V9F_027	NA IL_56467.6*
113	IL_5JUS_113	1/B/869:872, 1/B/888:890	Major groove platform with extra cWW homologous IL_5TBW_031	NA IL_95485.6*
114	IL_5JUS_114	1/B/873:875, 1/B/886:887	Single bulged U homologous IL_5TBW_032	NA IL_83039.11*
115	IL_5JUS_115	1/B/907:909, 1/B/919:923	Multiple bulged bases geometric IL_4WF9_027	NA IL_90991.5*
116	IL_5JUS_116	1/B/954:956, 1/B/965:967	homologous IL_5TBW_034	NA IL_01312.13*
117	IL_5JUS_117	1/B/969:970, 1/B/1111:1113	Single stack bend homologous IL_5TBW_035	NA IL_04038.4*
118	IL_5JUS_118	1/B/977:981, 1/B/1102:1104	homologous IL_5TBW_272	NA
119	IL_5JUS_119	1/B/982:986, 1/B/1098:1101	Tandem non-canonical cWW pairs geometric IL_5EW4_002	NA IL_85877.10*
120	IL_5JUS_120	1/B/990:997, 1/B/1052:1059	NA	NA
121	IL_5JUS_121	1/B/997:998, 1/B/1050:1052	Minor groove platform homologous IL_5TBW_039	NA IL_06437.11*
122	IL_5JUS_122	1/B/999:1004, 1/B/1046:1049	C-loop homologous IL_5TBW_040	NA IL_63596.4*
123	IL_5JUS_123	1/B/1005:1009, 1/B/1041:1045	NA	NA
124	IL_5JUS_124	1/B/1009:1011, 1/B/1039:1041	geometric IL_5UNE_006	NA IL_01312.13*
125	IL_5JUS_125	1/B/1014:1019, 1/B/1033:1036	NA	NA
126	IL_5JUS_126	1/B/1069:1071, 1/B/1087:1089	homologous IL_5TBW_044	NA IL_01312.13*
127	IL_5JUS_127	1/B/1074:1076, 1/B/1083:1084	Single bulged A geometric IL_5J7L_039	NA IL_80007.16*
128	IL_5JUS_128	1/B/1120:1122, 1/B/1136:1138	homologous IL_5TBW_046	NA IL_01312.13*
129	IL_5JUS_129	1/B/1167:1171, 1/B/1328:1332	UAA/GAN homologous IL_5TBW_048	NA IL_53523.5*
130	IL_5JUS_130	1/B/1173:1180, 1/B/1325:1326	SSU/LSU pseudoknot homologous IL_5TBW_049	NA IL_15861.6*
131	IL_5JUS_131	1/B/1180:1183, 1/B/1323:1325	geometric IL_5TBW_110	NA IL_01312.13*
132	IL_5JUS_132	1/B/1187:1194, 1/B/1314:1319	homologous IL_5TBW_051	NA IL_17971.1*
133	IL_5JUS_133	1/B/1194:1205, 1/B/1299:1314	geometric IL_5TBW_052	NA IL_94878.1*
134	IL_5JUS_134	1/B/1207:1209, 1/B/1296:1297	NA	NA
135	IL_5JUS_135	1/B/1216:1226, 1/B/1283:1289	NA	NA
136	IL_5JUS_136	1/B/1234:1238, 1/B/1250:1254	geometric IL_4V9F_043	NA IL_30542.1*
137	IL_5JUS_137	1/B/1262:1266, 1/B/1275:1277	Major groove platform with extra cWW homologous IL_5TBW_056	NA IL_95485.6*
138	IL_5JUS_138	1/B/1376:1378, 1/B/1428:1431	Isolated cWS basepair homologous IL_5TBW_057	NA IL_01312.13*
139	IL_5JUS_139	1/B/1385:1387, 1/B/1420:1421	Single bulged A homologous IL_5TBW_058	NA IL_80007.16*
140	IL_5JUS_140	1/B/1388:1395, 1/B/1415:1419	Kink-turn homologous IL_5TBW_059	NA IL_29549.9*
141	IL_5JUS_141	1/B/1398:1400, 1/B/1411:1412	Single bulged A homologous IL_5TBW_060	NA IL_80007.16*
142	IL_5JUS_142	1/B/1444:1451, 1/B/2353:2359	8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge geometric IL_4V9F_012	NA IL_59724.1*
143	IL_5JUS_143	1/B/1500:1505, 1/B/1513:1516	homologous IL_5TBW_062	NA IL_47743.1*
144	IL_5JUS_144	1/B/1532:1536, 1/B/1585:1590	UAA/GAN homologous IL_5TBW_063	NA IL_53523.5*
145	IL_5JUS_145	1/B/1562:1566, 1/B/1572:1577	NA	NA
146	IL_5JUS_146	1/B/1597:1598, 1/B/1609:1611	NA	NA
147	IL_5JUS_147	1/B/1618:1621, 1/B/1824:1826	Other IL homologous IL_5TBW_064	NA IL_87630.5*
148	IL_5JUS_148	1/B/1623:1625, 1/B/1818:1822	Major groove platform with extra pair geometric IL_7RQB_093	NA IL_87630.5*
149	IL_5JUS_149	1/B/1627:1631, 1/B/1811:1816	homologous IL_5TBW_066	NA IL_74736.1*
150	IL_5JUS_150	1/B/1645:1649, 1/B/1806:1810	Triple sheared homologous IL_5TBW_067	NA IL_56467.6*
151	IL_5JUS_151	1/B/1661:1663, 1/B/1786:1788	homologous IL_5TBW_068	NA IL_01312.13*
152	IL_5JUS_152	1/B/1669:1670, 1/B/1778:1780	Single bulged C homologous IL_5TBW_069	NA IL_61258.10*
153	IL_5JUS_153	1/B/1670:1671, 1/B/1776:1778	Single stack bend geometric IL_5J7L_249	NA IL_04038.4*
154	IL_5JUS_154	1/B/1694:1698, 1/B/1747:1752	homologous IL_5TBW_071	NA IL_14397.1*
155	IL_5JUS_155	1/B/1702:1707, 1/B/1737:1743	homologous IL_5TBW_072	NA IL_98876.1*
156	IL_5JUS_156	1/B/1711:1718, 1/B/1726:1733	NA	NA
157	IL_5JUS_157	1/B/1883:1889, 1/B/2346:2349	homologous IL_5TBW_074	NA IL_79393.8*
158	IL_5JUS_158	1/B/1895:1897, 1/B/2338:2340	Isolated tWW turn homologous IL_5TBW_075	NA IL_54997.5*
159	IL_5JUS_159	1/B/1898:1901, 1/B/2336:2337	Major groove platform; stack outside cWW homologous IL_5TBW_076	NA IL_80663.10*
160	IL_5JUS_160	1/B/1901:1906, 1/B/2333:2336	Intercalated tWH geometric IL_7A0S_062	NA IL_95601.1*
161	IL_5JUS_161	1/B/1918:1923, 1/B/1928:1934	tSH-tSH-tHH-tHS geometric IL_4V9F_063	NA IL_66584.5*
162	IL_5JUS_162	1/B/1940:1943, 1/B/2105:2108	Tandem non-canonical cWW pairs geometric IL_1L9A_005	NA IL_85877.10*
163	IL_5JUS_163	1/B/1946:1948, 1/B/2098:2102	NA	NA
164	IL_5JUS_164	1/B/1951:1953, 1/B/2094:2095	NA	NA
165	IL_5JUS_165	1/B/2128:2129, 1/B/2323:2325	Single bulged A homologous IL_5TBW_082	NA IL_80007.16*
166	IL_5JUS_166	1/B/2156:2161, 1/B/2173:2180	Kink-turn related homologous IL_5TBW_083	NA IL_95993.1*
167	IL_5JUS_167	1/B/2196:2199, 1/B/2245:2246	Major groove outside cWW, minor groove, intercalation pocket homologous IL_5TBW_084	NA IL_72766.2*
168	IL_5JUS_168	1/B/2200:2201, 1/B/2241:2244	Major groove outside cWW, minor groove, intercalation pocket homologous IL_5TBW_085	NA IL_13730.12*
169	IL_5JUS_169	1/B/2204:2210, 1/B/2235:2238	NA	NA
170	IL_5JUS_170	1/B/2211:2217, 1/B/2228:2234	homologous IL_5TBW_088	NA IL_36973.5*
171	IL_5JUS_171	1/B/2276:2277, 1/B/2307:2310	Multiple bulged bases geometric IL_5TBW_089	NA IL_69632.1*
172	IL_5JUS_172	1/B/2277:2288, 1/B/2304:2307	homologous IL_5TBW_090	NA IL_45481.1*
173	IL_5JUS_173	1/B/2391:2394, 1/B/2986:2988	Major groove platform with extra pair homologous IL_5TBW_091	NA IL_87630.5*
174	IL_5JUS_174	1/B/2396:2398, 1/B/2981:2984	Minor groove platform with intercalation homologous IL_5TBW_092	NA IL_86964.1*
175	IL_5JUS_175	1/B/2409:2411, 1/B/2811:2812	Single bulged U homologous IL_5TBW_093	NA IL_83039.11*
176	IL_5JUS_176	1/B/2412:2413, 1/B/2807:2810	Minor groove platform homologous IL_5TBW_094	NA IL_06437.11*
177	IL_5JUS_177	1/B/2423:2425, 1/B/2604:2607	Isolated tHS basepair with bulges homologous IL_5TBW_095	NA IL_38958.6*
178	IL_5JUS_178	1/B/2520:2526, 1/B/2584:2587	homologous IL_5TBW_096	NA IL_98353.1*
179	IL_5JUS_179	1/B/2614:2615, 1/B/2625:2627	Single bulged A homologous IL_5TBW_098	NA IL_80007.16*
180	IL_5JUS_180	1/B/2666:2668, 1/B/2686:2690	Isolated tHS basepair with bulges geometric IL_7RQB_082	NA IL_38958.6*
181	IL_5JUS_181	1/B/2718:2721, 1/B/2735:2738	Tandem non-canonical cWW pairs homologous IL_5TBW_100	NA IL_85877.10*
182	IL_5JUS_182	1/B/2770:2773, 1/B/2787:2788	Single stack bend with bulge homologous IL_5TBW_101	NA IL_31836.1*
183	IL_5JUS_183	1/B/2823:2824, 1/B/2865:2867	Major groove platform homologous IL_5TBW_102	NA IL_80663.10*
184	IL_5JUS_184	1/B/2824:2826, 1/B/2863:2865	geometric IL_7A0S_026	NA IL_01312.13*
185	IL_5JUS_185	1/B/2826:2828, 1/B/2862:2863	Major groove platform geometric IL_4V9F_083	NA IL_95601.1*
186	IL_5JUS_186	1/B/2828:2830, 1/B/2858:2862	homologous IL_5TBW_105	NA IL_07931.5*
187	IL_5JUS_187	1/B/2835:2839, 1/B/2849:2853	Triple sheared homologous IL_5TBW_106	NA IL_56467.6*
188	IL_5JUS_188	1/B/2876:2877, 1/B/2949:2951	Major groove platform homologous IL_5TBW_107	NA IL_80663.10*
189	IL_5JUS_189	1/B/2879:2881, 1/B/2943:2947	Isolated non-canonical cWW with bulges homologous IL_5TBW_108	NA IL_01312.13*
190	IL_5JUS_190	1/B/2881:2882, 1/B/2940:2943	Multiple bulged bases geometric IL_5TBW_109	NA IL_13730.12*
191	IL_5JUS_191	1/B/2889:2891, 1/B/2912:2914	geometric IL_4AOB_005	NA IL_01312.13*
192	IL_5JUS_192	1/B/2891:2892, 1/B/2909:2912	Minor groove platform with intercalation geometric IL_5TBW_111	NA IL_95601.1*
193	IL_5JUS_193	1/B/2918:2920, 1/B/2926:2928	homologous IL_5TBW_112	NA IL_01312.13*
194	IL_5JUS_194	1/B/2960:2961, 1/B/2970:2972	Single bulged A homologous IL_5TBW_113	NA IL_80007.16*
195	IL_5JUS_195	1/B/3004:3008, 1/B/3138:3144	Triple sheared geometric IL_7A0S_087	NA IL_56467.6*
196	IL_5JUS_196	1/B/3012:3014, 1/B/3040:3042	homologous IL_5TBW_115	NA IL_01312.13*
197	IL_5JUS_197	1/B/3018:3025, 1/B/3030:3036	8x7 Sarcin-Ricin; G-bulge homologous IL_5TBW_116	NA IL_04346.5*
198	IL_5JUS_198	1/B/3047:3051, 1/B/3091:3094	Major groove minor groove platform with tHH homologous IL_5TBW_117	NA IL_28060.3*
199	IL_5JUS_199	1/B/3054:3059, 1/B/3084:3088	UAA/GAN related homologous IL_5TBW_118	NA IL_53523.5*
200	IL_5JUS_200	1/B/3063:3064, 1/B/3077:3080	Multiple bulged bases homologous IL_5TBW_119	NA IL_13730.12*
201	IL_5JUS_201	1/B/3102:3107, 1/B/3127:3132	UAA/GAN with extra cWW geometric IL_7A0S_098	NA IL_49767.4*
202	IL_5JUS_202	1/B/3162:3166, 1/B/3284:3288	homologous IL_5TBW_121	NA IL_05867.1*
203	IL_5JUS_203	1/B/3168:3170, 1/B/3280:3282	homologous IL_5TBW_122	NA IL_01312.13*
204	IL_5JUS_204	1/B/3177:3179, 1/B/3210:3211	Single bulged A homologous IL_5TBW_123	NA IL_80007.16*
205	IL_5JUS_205	1/B/3179:3188, 1/B/3204:3210	geometric IL_5TBW_124	NA IL_56867.1*
206	IL_5JUS_206	1/B/3193:3194, 1/B/3197:3199	Single bulged U homologous IL_5TBW_125	NA IL_83039.11*
207	IL_5JUS_207	1/B/3225:3229, 1/B/3258:3260	homologous IL_5TBW_126	NA IL_50789.1*
208	IL_5JUS_208	1/B/3233:3235, 1/B/3252:3254	homologous IL_5TBW_127	NA IL_01312.13*
209	IL_5JUS_209	1/B/3235:3238, 1/B/3249:3252	Tandem non-canonical cWW pairs geometric IL_5TBW_129	NA IL_85877.10*
210	IL_5JUS_210	1/B/3300:3303, 1/B/3311:3314	Tandem non-canonical cWW pairs homologous IL_5TBW_129	NA IL_85877.10*
211	IL_5JUS_211	1/B/3318:3321, 1/B/3386:3388

5JUS Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops