Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5KCR_0011/1A/59:68No text annotation
Not in a motif group
homologous
HL_5J7L_134
HL_18177.1
HL_5KCR_0021/1A/87:95No text annotation
Not in a motif group
homologous
HL_5J7L_135
HL_84193.1
HL_5KCR_0031/1A/123:128No text annotation
Not in a motif group
homologous
HL_5J7L_136
HL_75407.1
HL_5KCR_0041/1A/135:144No text annotation
Not in a motif group
HL_5KCR_0051/1A/158:168No text annotation
Not in a motif group
homologous
HL_5J7L_138
HL_81820.1
HL_5KCR_0061/1A/194:201No text annotation
Not in a motif group
geometric
HL_5J7L_139
HL_06192.2
HL_5KCR_0071/1A/225:230No text annotation
Not in a motif group
homologous
HL_5J7L_140
HL_27930.1
HL_5KCR_0081/1A/246:252No text annotation
Not in a motif group
homologous
HL_5J7L_141
HL_67216.7
HL_5KCR_0091/1A/305:312T-loop with 1 bulged base
Not in a motif group
homologous
HL_5J7L_142
HL_89380.2
HL_5KCR_0101/1A/319:323No text annotation
Not in a motif group
homologous
HL_5J7L_143
HL_75407.1
HL_5KCR_0111/1A/327:335No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.8
HL_5KCR_0121/1A/382:392No text annotation
Not in a motif group
homologous
HL_5J7L_145
HL_91503.4
HL_5KCR_0131/1A/410:417No text annotation
Not in a motif group
homologous
HL_5J7L_146
HL_96598.1
HL_5KCR_0141/1A/462:467No text annotation
Not in a motif group
homologous
HL_7RQB_015
HL_42097.1
HL_5KCR_0151/1A/487:493No text annotation
Not in a motif group
homologous
HL_5J7L_148
HL_42097.1
HL_5KCR_0161/1A/543:550No text annotation
Not in a motif group
homologous
HL_5J7L_149
HL_79531.1
HL_5KCR_0171/1A/566:575T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_150
HL_89380.2
HL_5KCR_0181/1A/611:617No text annotation
Not in a motif group
homologous
HL_5J7L_151
HL_90617.2
HL_5KCR_0191/1A/629:634GNRA
Not in a motif group
homologous
HL_5J7L_152
HL_42097.1
HL_5KCR_0201/1A/641:647No text annotation
Not in a motif group
homologous
HL_5J7L_153
HL_77805.2
HL_5KCR_0211/1A/712:719No text annotation
Not in a motif group
homologous
HL_5J7L_154
HL_84085.2
HL_5KCR_0221/1A/744:753No text annotation
Not in a motif group
homologous
HL_5J7L_155
NA
HL_5KCR_0231/1A/779:785No text annotation
Not in a motif group
homologous
HL_5J7L_156
HL_74322.1
HL_5KCR_0241/1A/826:831No text annotation
Not in a motif group
homologous
HL_7RQB_025
HL_64365.1
HL_5KCR_0261/1A/954:963No text annotation
Not in a motif group
homologous
HL_5J7L_159
NA
HL_5KCR_0271/1A/978:985No text annotation
Not in a motif group
homologous
HL_5J7L_160
HL_64430.2
HL_5KCR_0281/1A/1064:1074No text annotation
Not in a motif group
homologous
HL_5J7L_161
HL_07145.1
HL_5KCR_0291/1A/1092:1099No text annotation
Not in a motif group
homologous
HL_6PRV_002
HL_84085.2
HL_5KCR_0301/1A/1170:1179No text annotation
Not in a motif group
HL_5KCR_0311/1A/1222:1227Other HL
Not in a motif group
homologous
HL_5J7L_164
HL_87030.2
HL_5KCR_0321/1A/1281:1289T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_165
HL_89380.2
HL_5KCR_0331/1A/1324:1330No text annotation
Not in a motif group
homologous
HL_5J7L_166
HL_46680.1
HL_5KCR_0341/1A/1363:1368Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_87030.2
HL_5KCR_0351/1A/1389:1398No text annotation
Not in a motif group
homologous
HL_5J7L_168
HL_69023.2
HL_5KCR_0361/1A/1451:1459No text annotation
Not in a motif group
geometric
HL_5J7L_169
HL_53837.1
HL_5KCR_0371/1A/1492:1498No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_46680.1
HL_5KCR_0381/1A/1533:1538UNCG
Not in a motif group
homologous
HL_5J7L_171
HL_03562.2
HL_5KCR_0391/1A/1565:1568No text annotation
Not in a motif group
homologous
HL_7RQB_039
HL_38927.2
HL_5KCR_0401/1A/1612:1619No text annotation
Not in a motif group
HL_5KCR_0411/1A/1630:1636GNRA with one bulged base
Not in a motif group
homologous
HL_5J7L_174
HL_42097.1
HL_5KCR_0421/1A/1691:1696UNCG
Not in a motif group
geometric
HL_5J7L_175
HL_03562.2
HL_5KCR_0431/1A/1728:1731No text annotation
Not in a motif group
HL_5KCR_0441/1A/1752:1756No text annotation
Not in a motif group
homologous
HL_5J7L_177
HL_76539.2
HL_5KCR_0451/1A/1777:1787No text annotation
Not in a motif group
homologous
HL_5J7L_178
HL_43613.5
HL_5KCR_0461/1A/1806:1811No text annotation
Not in a motif group
homologous
HL_5J7L_179
HL_42097.1
HL_5KCR_0471/1A/1868:1873Other HL
Not in a motif group
homologous
HL_5J7L_180
HL_42097.1
HL_5KCR_0481/1A/1910:1920No text annotation
Not in a motif group
homologous
HL_5J7L_181
NA
HL_5KCR_0491/1A/1949:1957No text annotation
Not in a motif group
homologous
HL_7RQB_049
HL_51824.1
HL_5KCR_0501/1A/2027:2036No text annotation
Not in a motif group
HL_5KCR_0511/1A/2143:2148No text annotation
Not in a motif group
homologous
HL_5J7L_184
NA
HL_5KCR_0521/1A/2209:2215No text annotation
Not in a motif group
homologous
HL_5J7L_185
HL_16845.6
HL_5KCR_0531/1A/2248:2256No text annotation
Not in a motif group
homologous
HL_5J7L_186
NA
HL_5KCR_0541/1A/2264:2276No text annotation
Not in a motif group
homologous
HL_5J7L_187
HL_19870.6
HL_5KCR_0551/1A/2303:2313No text annotation
Not in a motif group
homologous
HL_5J7L_188
HL_11805.3
HL_5KCR_0561/1A/2324:2331No text annotation
Not in a motif group
homologous
HL_5J7L_189
HL_12078.2
HL_5KCR_0571/1A/2356:2361Other HL
Not in a motif group
homologous
HL_5J7L_190
HL_87030.2
HL_5KCR_0581/1A/2374:2379GNRA
Not in a motif group
homologous
HL_5J7L_191
HL_42097.1
HL_5KCR_0591/1A/2404:2413No text annotation
Not in a motif group
homologous
HL_5J7L_192
HL_30784.2
HL_5KCR_0601/1A/2471:2479No text annotation
Not in a motif group
homologous
HL_5J7L_193
HL_06192.2
HL_5KCR_0611/1A/2528:2535No text annotation
Not in a motif group
homologous
HL_5J7L_194
HL_88526.2
HL_5KCR_0621/1A/2551:2557No text annotation
Not in a motif group
homologous
HL_5J7L_195
NA
HL_5KCR_0631/1A/2594:2599GNRA
Not in a motif group
homologous
HL_5J7L_196
HL_42097.1
HL_5KCR_0641/1A/2658:2663GNRA
Not in a motif group
homologous
HL_5J7L_197
HL_42097.1
HL_5KCR_0651/1A/2701:2706Ribsomal LSU H95
Not in a motif group
homologous
HL_5J7L_198
HL_46680.1
HL_5KCR_0661/1A/2745:2759No text annotation
Not in a motif group
homologous
HL_5J7L_199
HL_56677.7
HL_5KCR_0671/1A/2795:2801Other HL
Not in a motif group
homologous
HL_5J7L_200
HL_34168.2
HL_5KCR_0681/1A/2819:2827No text annotation
Not in a motif group
homologous
HL_5J7L_201
HL_27930.1
HL_5KCR_0691/1A/2856:2861Other HL
Not in a motif group
homologous
HL_5J7L_202
HL_42097.1
HL_5KCR_0701/1B/38:44No text annotation
Not in a motif group
geometric
HL_5J7L_203
HL_87939.1
HL_5KCR_0711/1B/86:90No text annotation
Not in a motif group
homologous
HL_5J7L_204
HL_38927.2
HL_5KCR_0721/1a/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_5KCR_0731/1a/80:89No text annotation
Not in a motif group
HL_5KCR_0741/1a/158:163GNRA
Not in a motif group
homologous
HL_5J7L_003
HL_42097.1
HL_5KCR_0751/1a/186:191GNRA
Not in a motif group
homologous
HL_5J7L_004
HL_42097.1
HL_5KCR_0761/1a/207:212UNCG
Not in a motif group
homologous
HL_5J7L_005
HL_03562.2
HL_5KCR_0771/1a/259:267No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_69023.2
HL_5KCR_0781/1a/296:301GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_42097.1
HL_5KCR_0791/1a/320:333No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_5KCR_0801/1a/342:347UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_5KCR_0811/1a/379:384GNRA
Not in a motif group
homologous
HL_5J7L_010
HL_42097.1
HL_5KCR_0821/1a/419:424UNCG
Not in a motif group
homologous
HL_4LFB_011
HL_03562.2
HL_5KCR_0831/1a/462:470No text annotation
Not in a motif group
homologous
HL_5J7L_012
HL_84085.2
HL_5KCR_0841/1a/522:527No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_75407.1
HL_5KCR_0851/1a/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.1
HL_5KCR_0861/1a/689:698No text annotation
Not in a motif group
homologous
HL_5J7L_015
HL_12326.1
HL_5KCR_0871/1a/726:731Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_5KCR_0881/1a/786:796No text annotation
Not in a motif group
homologous
HL_5J7L_017
HL_12326.1
HL_5KCR_0891/1a/840:846No text annotation
Not in a motif group
HL_5KCR_0901/1a/862:867GNRA
Not in a motif group
homologous
HL_5J7L_019
HL_42097.1
HL_5KCR_0911/1a/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_5KCR_0921/1a/963:972No text annotation
Not in a motif group
homologous
HL_5J7L_021
NA
HL_5KCR_0931/1a/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_5KCR_0941/1a/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_42097.1
HL_5KCR_0951/1a/1089:1096No text annotation
Not in a motif group
homologous
HL_5J7L_024
HL_71554.2
HL_5KCR_0961/1a/1134:1140No text annotation
Not in a motif group
homologous
HL_5J7L_025
HL_03562.2
HL_5KCR_0971/1a/1165:1171No text annotation
Not in a motif group
homologous
HL_5J7L_026
HL_90617.2
HL_5KCR_0981/1a/1265:1270GNRA
Not in a motif group
homologous
HL_5J7L_027
HL_42097.1
HL_5KCR_0991/1a/1314:1323No text annotation
Not in a motif group
homologous
HL_5J7L_028
HL_89380.2
HL_5KCR_1001/1a/1356:1366No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_5KCR_1011/1a/1449:1454UNCG
Not in a motif group
homologous
HL_5J7L_030
HL_03562.2
HL_5KCR_1021/1a/1515:1520No text annotation
Not in a motif group
homologous
HL_5J7L_031
NA
HL_5KCR_1031/1x/11:25No text annotation
Not in a motif group
homologous
HL_4WSM_208
HL_43667.1
HL_5KCR_1041/1x/32:40tRNA anticodon loop
Not in a motif group
homologous
HL_3TUP_002
HL_53597.2
HL_5KCR_1051/1x/48:55No text annotation
Not in a motif group
HL_5KCR_1061/1x/64:72T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4LCK_003
HL_22280.1

Problematic loops

#loop idProblemSequence
HL_5KCR_025No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5KCR_0011/1A/24:30,
1/1A/510:516
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_245
IL_66414.6
IL_5KCR_0021/1A/36:37,
1/1A/442:444
Single bulged A
Not in a motif group
homologous
IL_5J7L_246
IL_37497.2
IL_5KCR_0031/1A/43:44,
1/1A/434:436
Minor groove platform
Not in a motif group
homologous
IL_5J7L_247
IL_42622.2
IL_5KCR_0041/1A/81:85,
1/1A/97:105
No text annotation
Not in a motif group
homologous
IL_5J7L_248
IL_93699.1
IL_5KCR_0051/1A/183:184,
1/1A/212:214
Single stack bend
Not in a motif group
homologous
IL_5J7L_249
IL_76488.2
IL_5KCR_0061/1A/188:194,
1/1A/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_250
IL_04346.7
IL_5KCR_0071/1A/239:245,
1/1A/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_251
IL_76042.2
IL_5KCR_0081/1A/269:271,
1/1A/366:370
No text annotation
Not in a motif group
homologous
IL_5J7L_252
IL_47972.1
IL_5KCR_0091/1A/274:281,
1/1A/359:363
No text annotation
Not in a motif group
homologous
IL_5J7L_253
IL_77870.1
IL_5KCR_0101/1A/293:295,
1/1A/343:347
No text annotation
Not in a motif group
homologous
IL_5J7L_254
IL_69440.1
IL_5KCR_0111/1A/481:484,
1/1A/496:509
No text annotation
Not in a motif group
geometric
IL_5J7L_255
IL_60992.6
IL_5KCR_0121/1A/536:539,
1/1A/554:557
Double sheared
Not in a motif group
homologous
IL_5J7L_256
IL_09705.9
IL_5KCR_0131/1A/564:566,
1/1A/575:577
No text annotation
Not in a motif group
geometric
IL_5J7L_257
IL_95997.1
IL_5KCR_0141/1A/606:610,
1/1A/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_5J7L_258
IL_17136.1
IL_5KCR_0151/1A/672:674,
1/1A/806:808
No text annotation
Not in a motif group
geometric
IL_5J7L_259
IL_95997.1
IL_5KCR_0161/1A/674:678,
1/1A/799:806
tHW-tHW cross-strand stack
Not in a motif group
homologous
IL_5J7L_260
IL_17470.6
IL_5KCR_0171/1A/697:698,
1/1A/763:765
Single bulged A
Not in a motif group
geometric
IL_5J7L_261
IL_37497.2
IL_5KCR_0181/1A/702:703,
1/1A/728:730
Single bulged G
Not in a motif group
geometric
IL_5J7L_262
IL_00225.2
IL_5KCR_0191/1A/703:707,
1/1A/724:728
Triple sheared
Not in a motif group
homologous
IL_5J7L_263
IL_56467.8
IL_5KCR_0201/1A/738:740,
1/1A/757:758
Major groove platform
Not in a motif group
homologous
IL_5J7L_264
IL_27635.1
IL_5KCR_0211/1A/775:777,
1/1A/787:791
Multiple bulged bases
Not in a motif group
geometric
IL_5J7L_265
IL_90991.6
IL_5KCR_0221/1A/837:838,
1/1A/940:942
Single stack bend
Not in a motif group
homologous
IL_5J7L_266
IL_92001.1
IL_5KCR_0231/1A/844:847,
1/1A/933:934
No text annotation
Not in a motif group
IL_5KCR_0241/1A/847:848,
1/1A/930:933
Stack outside cWW
Not in a motif group
geometric
IL_5J7L_268
IL_37629.1
IL_5KCR_0251/1A/850:851,
1/1A/926:928
Single stack bend
Not in a motif group
homologous
IL_5J7L_269
IL_76488.2
IL_5KCR_0261/1A/856:862,
1/1A/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
homologous
IL_5J7L_270
IL_93830.3
IL_5KCR_0271/1A/862:863,
1/1A/913:915
Single bulged G
Not in a motif group
geometric
IL_5J7L_271
IL_00225.2
IL_5KCR_0281/1A/864:868,
1/1A/909:912
C-loop
Not in a motif group
homologous
IL_5J7L_272
IL_63596.6
IL_5KCR_0291/1A/870:872,
1/1A/905:907
No text annotation
Not in a motif group
homologous
IL_5J7L_273
IL_95997.1
IL_5KCR_0301/1A/875:879,
1/1A/898:902
Triple sheared
Not in a motif group
homologous
IL_5J7L_274
IL_56467.8
IL_5KCR_0311/1A/880:882,
1/1A/894:897
No text annotation
Not in a motif group
geometric
IL_7A0S_092
IL_82842.2
IL_5KCR_0321/1A/994:996,
1/1A/1159:1160
Single bulged C
Not in a motif group
homologous
IL_5J7L_276
IL_61258.12
IL_5KCR_0331/1A/998:1002,
1/1A/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_5J7L_277
IL_89002.2
IL_5KCR_0341/1A/1004:1011,
1/1A/1150:1151
SSU/LSU pseudoknot
Not in a motif group
geometric
IL_5J7L_278
IL_15861.7
IL_5KCR_0351/1A/1011:1013,
1/1A/1149:1150
Single bulged U
Not in a motif group
homologous
IL_5J7L_279
IL_83039.13
IL_5KCR_0361/1A/1018:1024,
1/1A/1140:1144
No text annotation
Not in a motif group
geometric
IL_5J7L_280
IL_57188.3
IL_5KCR_0371/1A/1024:1030,
1/1A/1124:1140
No text annotation
Not in a motif group
geometric
IL_5J7L_281
IL_50715.1
IL_5KCR_0381/1A/1031:1034,
1/1A/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_282
IL_82068.2
IL_5KCR_0391/1A/1038:1041,
1/1A/1114:1117
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_283
IL_30621.2
IL_5KCR_0401/1A/1043:1051,
1/1A/1108:1112
Kink-turn
Not in a motif group
homologous
IL_5J7L_284
IL_90538.4
IL_5KCR_0411/1A/1059:1062,
1/1A/1076:1079
No text annotation
Not in a motif group
homologous
IL_6PRV_001
IL_23544.2
IL_5KCR_0421/1A/1087:1091,
1/1A/1100:1102
Major groove platform with extra cWW
Not in a motif group
geometric
IL_5D8H_003
IL_05564.2
IL_5KCR_0431/1A/1196:1198,
1/1A/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_5J7L_286
IL_52767.2
IL_5KCR_0441/1A/1202:1206,
1/1A/1240:1243
No text annotation
Not in a motif group
homologous
IL_5J7L_287
IL_91920.1
IL_5KCR_0451/1A/1208:1215,
1/1A/1234:1238
Kink-turn
Not in a motif group
homologous
IL_5J7L_288
IL_70923.2
IL_5KCR_0461/1A/1262:1269,
1/1A/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_289
IL_04346.7
IL_5KCR_0471/1A/1310:1313,
1/1A/1603:1604
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_5J7L_290
IL_50694.2
IL_5KCR_0481/1A/1319:1323,
1/1A/1331:1333
C-loop
Not in a motif group
homologous
IL_5J7L_291
IL_63596.6
IL_5KCR_0491/1A/1351:1355,
1/1A/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_5J7L_292
IL_89002.2
IL_5KCR_0501/1A/1357:1361,
1/1A/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_17136.1
IL_5KCR_0511/1A/1415:1416,
1/1A/1582:1587
No text annotation
Not in a motif group
homologous
IL_5J7L_294
IL_90348.1
IL_5KCR_0521/1A/1417:1421,
1/1A/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_5J7L_295
IL_89002.2
IL_5KCR_0531/1A/1432:1435,
1/1A/1557:1561
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_296
IL_55178.1
IL_5KCR_0541/1A/1437:1440,
1/1A/1551:1555
tSH-tHW
Not in a motif group
homologous
IL_5J7L_297
IL_04059.1
IL_5KCR_0551/1A/1450:1451,
1/1A/1459:1461
Single bulged U
Not in a motif group
homologous
IL_5J7L_298
IL_83039.13
IL_5KCR_0561/1A/1468:1471,
1/1A/1520:1524
No text annotation
Not in a motif group
homologous
IL_5J7L_299
IL_68574.2
IL_5KCR_0571/1A/1474:1478,
1/1A/1513:1517
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_300
IL_38862.1
IL_5KCR_0581/1A/1481:1482,
1/1A/1507:1510
No text annotation
Not in a motif group
homologous
IL_5J7L_301
IL_67474.4
IL_5KCR_0591/1A/1489:1491,
1/1A/1499:1500
Single bulged A
Not in a motif group
homologous
IL_5J7L_302
IL_37497.2
IL_5KCR_0601/1A/1526:1529,
1/1A/1542:1546
UAA/GAN variation
Not in a motif group
homologous
IL_5J7L_303
IL_07235.1
IL_5KCR_0611/1A/1651:1656,
1/1A/2004:2006
No text annotation
Not in a motif group
homologous
IL_5J7L_304
IL_12566.2
IL_5KCR_0621/1A/1663:1665,
1/1A/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_5J7L_305
IL_54997.7
IL_5KCR_0631/1A/1666:1669,
1/1A/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_5J7L_306
IL_50694.2
IL_5KCR_0641/1A/1669:1674,
1/1A/1990:1993
Intercalated tWH
Not in a motif group
homologous
IL_5J7L_307
IL_82842.2
IL_5KCR_0651/1A/1686:1691,
1/1A/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
homologous
IL_5J7L_308
IL_65969.2
IL_5KCR_0661/1A/1712:1718,
1/1A/1742:1746
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_309
IL_88269.3
IL_5KCR_0671/1A/1720:1724,
1/1A/1736:1740
Triple sheared
Not in a motif group
homologous
IL_5J7L_310
IL_56467.8
IL_5KCR_0681/1A/1727:1728,
1/1A/1731:1733
No text annotation
Not in a motif group
IL_5KCR_0691/1A/1770:1771,
1/1A/1980:1982
Single bulged A
Not in a motif group
homologous
IL_5J7L_312
IL_37497.2
IL_5KCR_0701/1A/1798:1804,
1/1A/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_5J7L_313
IL_17069.3
IL_5KCR_0711/1A/1837:1840,
1/1A/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_314
IL_88739.1
IL_5KCR_0721/1A/1841:1842,
1/1A/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_16396.2
IL_5KCR_0731/1A/1846:1849,
1/1A/1893:1894
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_316
IL_09061.6
IL_5KCR_0741/1A/1864:1867,
1/1A/1874:1878
UAA/GAN related
Not in a motif group
homologous
IL_5J7L_317
IL_77691.1
IL_5KCR_0751/1A/1933:1934,
1/1A/1964:1967
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_076
IL_59677.2
IL_5KCR_0761/1A/1934:1945,
1/1A/1961:1964
No text annotation
Not in a motif group
geometric
IL_7A0S_072
IL_81589.2
IL_5KCR_0771/1A/2050:2052,
1/1A/2617:2618
Major groove platform
Not in a motif group
homologous
IL_5J7L_320
IL_27635.1
IL_5KCR_0781/1A/2054:2056,
1/1A/2612:2615
No text annotation
Not in a motif group
homologous
IL_5J7L_321
IL_54678.5
IL_5KCR_0791/1A/2064:2066,
1/1A/2444:2446
No text annotation
Not in a motif group
homologous
IL_5J7L_322
NA
IL_5KCR_0801/1A/2067:2070,
1/1A/2441:2443
No text annotation
Not in a motif group
homologous
IL_5J7L_323
NA
IL_5KCR_0811/1A/2070:2071,
1/1A/2438:2441
Minor groove platform
Not in a motif group
geometric
IL_7RQB_081
IL_42622.2
IL_5KCR_0821/1A/2081:2083,
1/1A/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_5J7L_325
IL_38958.7
IL_5KCR_0831/1A/2085:2087,
1/1A/2232:2234
No text annotation
Not in a motif group
homologous
IL_5J7L_326
IL_95997.1
IL_5KCR_0841/1A/2101:2106,
1/1A/2183:2188
No text annotation
Not in a motif group
IL_5KCR_0851/1A/2107:2123,
1/1A/2175:2182
No text annotation
Not in a motif group
geometric
IL_5J7L_328
IL_20245.1
IL_5KCR_0861/1A/2124:2128,
1/1A/2160:2174
No text annotation
Not in a motif group
IL_5KCR_0871/1A/2129:2136,
1/1A/2155:2159
Kink-turn
Not in a motif group
homologous
IL_5J7L_330
IL_70923.2
IL_5KCR_0881/1A/2202:2204,
1/1A/2220:2221
Single bulged U
Not in a motif group
homologous
IL_5J7L_331
IL_83039.13
IL_5KCR_0891/1A/2297:2299,
1/1A/2317:2321
No text annotation
Not in a motif group
homologous
IL_5J7L_332
IL_56105.1
IL_5KCR_0901/1A/2350:2353,
1/1A/2364:2367
Double sheared
Not in a motif group
homologous
IL_5J7L_333
IL_09705.9
IL_5KCR_0911/1A/2401:2403,
1/1A/2414:2415
Single bulged U
Not in a motif group
homologous
IL_5J7L_334
IL_83039.13
IL_5KCR_0921/1A/2453:2455,
1/1A/2496:2500
No text annotation
Not in a motif group
homologous
IL_5J7L_335
NA
IL_5KCR_0931/1A/2456:2459,
1/1A/2493:2495
Major groove platform with extra pair
Not in a motif group
geometric
IL_7RQB_093
IL_63450.2
IL_5KCR_0941/1A/2459:2461,
1/1A/2489:2493
Major groove minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_337
IL_92788.2
IL_5KCR_0951/1A/2466:2470,
1/1A/2480:2484
Triple sheared
Not in a motif group
homologous
IL_5J7L_338
IL_56467.8
IL_5KCR_0961/1A/2507:2509,
1/1A/2579:2582
No text annotation
Not in a motif group
homologous
IL_5J7L_339
NA
IL_5KCR_0971/1A/2510:2512,
1/1A/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5J7L_340
IL_90933.2
IL_5KCR_0981/1A/2512:2513,
1/1A/2571:2574
No text annotation
Not in a motif group
homologous
IL_5J7L_341
IL_71530.2
IL_5KCR_0991/1A/2522:2523,
1/1A/2540:2543
Minor groove platform with intercalation
Not in a motif group
homologous
IL_5J7L_342
IL_95601.3
IL_5KCR_1001/1A/2588:2591,
1/1A/2603:2606
No text annotation
Not in a motif group
geometric
IL_6AZ4_001
IL_69145.1
IL_5KCR_1011/1A/2591:2592,
1/1A/2601:2603
Single bulged A
Not in a motif group
homologous
IL_5J7L_344
IL_37497.2
IL_5KCR_1021/1A/2636:2640,
1/1A/2774:2782
No text annotation
Not in a motif group
homologous
IL_5J7L_345
IL_04638.1
IL_5KCR_1031/1A/2652:2658,
1/1A/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
geometric
IL_5J7L_346
IL_16458.1
IL_5KCR_1041/1A/2680:2684,
1/1A/2725:2727
C-loop
Not in a motif group
homologous
IL_5J7L_347
IL_63596.6
IL_5KCR_1051/1A/2687:2691,
1/1A/2718:2722
No text annotation
Not in a motif group
homologous
IL_5J7L_348
IL_08296.3
IL_5KCR_1061/1A/2695:2696,
1/1A/2711:2714
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_349
IL_71530.2
IL_5KCR_1071/1A/2737:2742,
1/1A/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_5J7L_350
IL_49767.5
IL_5KCR_1081/1A/2806:2811,
1/1A/2889:2892
No text annotation
Not in a motif group
geometric
IL_5J7L_351
IL_49460.2
IL_5KCR_1091/1A/2838:2839,
1/1A/2878:2880
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_352
IL_16396.2
IL_5KCR_1101/1A/2843:2846,
1/1A/2870:2874
Multiple bulged bases with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_353
IL_58764.3
IL_5KCR_1111/1A/2847:2852,
1/1A/2865:2869
No text annotation
Not in a motif group
homologous
IL_5J7L_354
IL_83162.5
IL_5KCR_1121/1B/17:18,
1/1B/65:67
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_355
IL_37497.2
IL_5KCR_1131/1B/23:28,
1/1B/56:60
No text annotation
Not in a motif group
homologous
IL_5J7L_356
IL_18472.2
IL_5KCR_1141/1B/30:31,
1/1B/51:54
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_357
IL_09061.6
IL_5KCR_1151/1B/34:38,
1/1B/44:48
Symmetric double minor groove platform
Not in a motif group
homologous
IL_5J7L_358
IL_58103.6
IL_5KCR_1161/1B/71:79,
1/1B/97:105
Bacterial 5S Loop E
Not in a motif group
homologous
IL_5J7L_359
IL_56455.3
IL_5KCR_1171/1a/30:32,
1/1a/552:553
Single bulged G
Not in a motif group
homologous
IL_6CZR_113
IL_00225.2
IL_5KCR_1181/1a/44:45,
1/1a/396:398
Single bulged A
Not in a motif group
homologous
IL_5J7L_002
IL_37497.2
IL_5KCR_1191/1a/47:52,
1/1a/359:361
No text annotation
Not in a motif group
geometric
IL_5J7L_003
IL_11178.1
IL_5KCR_1201/1a/54:56,
1/1a/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_93353.1
IL_5KCR_1211/1a/63:66,
1/1a/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_005
IL_76389.1
IL_5KCR_1221/1a/67:69,
1/1a/99:102
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_65006.1
IL_5KCR_1231/1a/70:73,
1/1a/97:98
Minor groove platform
Not in a motif group
homologous
IL_5J7L_007
IL_15052.1
IL_5KCR_1241/1a/75:76,
1/1a/93:95
Major groove intercalation
Not in a motif group
geometric
IL_5J7L_352
IL_16396.2
IL_5KCR_1251/1a/128:131,
1/1a/231:233
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_009
IL_82068.2
IL_5KCR_1261/1a/132:136,
1/1a/227:230
Minor groove platform related
Not in a motif group
homologous
IL_5J7L_010
IL_58764.3
IL_5KCR_1271/1a/144:146,
1/1a/176:178
Isolated cWH basepair
Not in a motif group
homologous
IL_5J7L_011
IL_51629.2
IL_5KCR_1281/1a/147:153,
1/1a/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_5KCR_1291/1a/203:206,
1/1a/213:214
No text annotation
Not in a motif group
IL_5KCR_1301/1a/242:247,
1/1a/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_5J7L_014
IL_45067.2
IL_5KCR_1311/1a/249:252,
1/1a/274:275
No text annotation
Not in a motif group
homologous
IL_5J7L_015
IL_48100.2
IL_5KCR_1321/1a/292:293,
1/1a/304:308
C-loop
Not in a motif group
homologous
IL_5J7L_016
IL_37712.2
IL_5KCR_1331/1a/367:369,
1/1a/392:393
Single bulged U
Not in a motif group
geometric
IL_5J7L_017
IL_83039.13
IL_5KCR_1341/1a/371:375,
1/1a/389:390
C-loop
Not in a motif group
homologous
IL_5J7L_018
IL_75255.1
IL_5KCR_1351/1a/375:376,
1/1a/387:389
Single bulged G
Not in a motif group
geometric
IL_5J7L_019
IL_00225.2
IL_5KCR_1361/1a/409:416,
1/1a/427:433
No text annotation
Not in a motif group
homologous
IL_5J7L_020
IL_28026.1
IL_5KCR_1371/1a/440:442,
1/1a/492:497
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_22248.1
IL_5KCR_1381/1a/446:450,
1/1a/483:488
tSH-tHW-tWW
Not in a motif group
homologous
IL_5J7L_022
IL_88269.3
IL_5KCR_1391/1a/450:455,
1/1a/477:483
No text annotation
Not in a motif group
IL_5KCR_1401/1a/504:511,
1/1a/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4LFB_020
IL_15861.7
IL_5KCR_1411/1a/515:521,
1/1a/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_5KCR_1421/1a/580:584,
1/1a/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_027
IL_17136.1
IL_5KCR_1431/1a/594:596,
1/1a/644:645
Major groove platform
Not in a motif group
homologous
IL_5J7L_028
IL_27635.1
IL_5KCR_1441/1a/597:598,
1/1a/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4LFB_025
IL_09061.6
IL_5KCR_1451/1a/605:612,
1/1a/628:633
No text annotation
Not in a motif group
homologous
IL_5J7L_030
IL_78349.1
IL_5KCR_1461/1a/654:655,
1/1a/751:754
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_4LFB_027
IL_50694.2
IL_5KCR_1471/1a/658:659,
1/1a/746:748
Single stack bend
Not in a motif group
homologous
IL_5J7L_032
IL_76488.2
IL_5KCR_1481/1a/662:666,
1/1a/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_71110.1
IL_5KCR_1491/1a/684:688,
1/1a/699:706
Kink-turn
Not in a motif group
homologous
IL_5J7L_035
IL_45067.2
IL_5KCR_1501/1a/774:778,
1/1a/804:805
Left turn
Not in a motif group
homologous
IL_4LFB_032
IL_29346.1
IL_5KCR_1511/1a/779:783,
1/1a/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_033
IL_17136.1
IL_5KCR_1521/1a/887:894,
1/1a/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_5J7L_038
IL_24606.2
IL_5KCR_1531/1a/922:923,
1/1a/1393:1395
Single bulged A
Not in a motif group
homologous
IL_5J7L_039
IL_37497.2
IL_5KCR_1541/1a/925:927,
1/1a/1390:1391
Single bulged G
Not in a motif group
homologous
IL_4LFB_036
IL_00225.2
IL_5KCR_1551/1a/933:935,
1/1a/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_4LFB_037
IL_47078.1
IL_5KCR_1561/1a/953:954,
1/1a/1226:1228
Minor groove platform
Not in a motif group
homologous
IL_5J7L_042
IL_42622.2
IL_5KCR_1571/1a/993:997,
1/1a/1044:1045
Minor groove platform
Not in a motif group
geometric
IL_4LFB_039
IL_47078.1
IL_5KCR_1581/1a/998:999,
1/1a/1041:1043
Single stack bend
Not in a motif group
homologous
IL_5J7L_044
IL_76488.2
IL_5KCR_1591/1a/1003:1007,
1/1a/1022:1037
No text annotation
Not in a motif group
IL_5KCR_1601/1a/1048:1050,
1/1a/1208:1209
Single bulged U
Not in a motif group
homologous
IL_5J7L_046
IL_83039.13
IL_5KCR_1611/1a/1052:1056,
1/1a/1204:1206
Isolated cWS basepair
Not in a motif group
homologous
IL_4LFB_044
IL_76319.2
IL_5KCR_1621/1a/1057:1058,
1/1a/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_4LFB_045
IL_93353.1
IL_5KCR_1631/1a/1060:1061,
1/1a/1195:1197
Single bulged A
Not in a motif group
homologous
IL_5J7L_049
IL_37497.2
IL_5KCR_1641/1a/1061:1063,
1/1a/1193:1195
No text annotation
Not in a motif group
geometric
IL_4LFB_047
IL_95997.1
IL_5KCR_1651/1a/1124:1128,
1/1a/1144:1149
No text annotation
Not in a motif group
homologous
IL_5J7L_051
IL_93211.1
IL_5KCR_1661/1a/1129:1132,
1/1a/1142:1143
Minor groove platform
Not in a motif group
homologous
IL_5J7L_052
IL_15052.1
IL_5KCR_1671/1a/1158:1161,
1/1a/1175:1181
No text annotation
Not in a motif group
geometric
IL_4LFB_050
IL_42032.1
IL_5KCR_1681/1a/1247:1253,
1/1a/1284:1290
No text annotation
Not in a motif group
homologous
IL_5J7L_054
IL_09129.1
IL_5KCR_1691/1a/1255:1258,
1/1a/1277:1282
No text annotation
Not in a motif group
homologous
IL_5J7L_055
IL_75461.4
IL_5KCR_1701/1a/1259:1263,
1/1a/1272:1276
Triple sheared
Not in a motif group
homologous
IL_5J7L_056
IL_56467.8
IL_5KCR_1711/1a/1303:1308,
1/1a/1329:1334
No text annotation
Not in a motif group
homologous
IL_5J7L_057
IL_19954.2
IL_5KCR_1721/1a/1399:1401,
1/1a/1501:1504
No text annotation
Not in a motif group
homologous
IL_5J7L_058
IL_36143.3
IL_5KCR_1731/1a/1401:1404,
1/1a/1497:1501
No text annotation
Not in a motif group
IL_5KCR_1741/1a/1405:1407,
1/1a/1494:1496
No text annotation
Not in a motif group
geometric
IL_3BNR_012
IL_95997.1
IL_5KCR_1751/1a/1407:1409,
1/1a/1491:1494
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5J7L_009
IL_82068.2
IL_5KCR_1761/1a/1412:1414,
1/1a/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_5KCR_1771/1a/1416:1419,
1/1a/1481:1484
Double sheared
Not in a motif group
homologous
IL_6CZR_169
IL_09705.9
IL_5KCR_1781/1a/1430:1435,
1/1a/1466:1470
Triple sheared related
Not in a motif group
homologous
IL_5J7L_063
IL_64879.2
IL_5KCR_1791/1a/1440:1442,
1/1a/1460:1461
Minor groove platform
Not in a motif group
homologous
IL_5J7L_064
IL_42622.2
IL_5KCR_1801/1a/1445:1448,
1/1a/1455:1457
No text annotation
Not in a motif group
homologous
IL_5J7L_065
IL_02284.5

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5KCR_0011/1A/30:31,
1/1A/474:481,
1/1A/509:510
No text annotation
Not in a motif group
J3_5KCR_0021/1A/56:57,
1/1A/70:76,
1/1A/110:114
No text annotation
Not in a motif group
homologous
J3_5J7L_037
NA
J3_5KCR_0031/1A/683:689,
1/1A/773:775,
1/1A/791:794
No text annotation
Not in a motif group
homologous
J3_7RQB_004
NA
J3_5KCR_0041/1A/698:700,
1/1A/732:736,
1/1A/760:763
No text annotation
Not in a motif group
homologous
J3_5J7L_039
NA
J3_5KCR_0051/1A/1055:1057,
1/1A/1081:1087,
1/1A/1102:1104
No text annotation
Not in a motif group
homologous
J3_5J7L_040
NA
J3_5KCR_0061/1A/1298:1303,
1/1A/1625:1627,
1/1A/1639:1642
No text annotation
Not in a motif group
homologous
J3_5J7L_041
NA
J3_5KCR_0071/1A/1306:1309,
1/1A/1605:1611,
1/1A/1620:1622
No text annotation
Not in a motif group
homologous
J3_5J7L_042
NA
J3_5KCR_0081/1A/1344:1349,
1/1A/1382:1385,
1/1A/1402:1403
No text annotation
Not in a motif group
homologous
J3_5J7L_043
NA
J3_5KCR_0091/1A/2091:2093,
1/1A/2196:2200,
1/1A/2223:2228
No text annotation
Not in a motif group
homologous
J3_5J7L_044
NA
J3_5KCR_0101/1A/2295:2297,
1/1A/2321:2323,
1/1A/2332:2337
No text annotation
Not in a motif group
J3_5KCR_0111/1A/2517:2520,
1/1A/2545:2547,
1/1A/2561:2567
No text annotation
Not in a motif group
homologous
J3_5J7L_046
NA
J3_5KCR_0121/1A/2789:2791,
1/1A/2805:2806,
1/1A/2892:2894
No text annotation
Not in a motif group
homologous
J3_5J7L_047
NA
J3_5KCR_0131/1A/2812:2815,
1/1A/2831:2836,
1/1A/2882:2888
No text annotation
Not in a motif group
homologous
J3_5J7L_048
NA
J3_5KCR_0141/1B/10:16,
1/1B/68:70,
1/1B/106:110
No text annotation
Not in a motif group
homologous
J3_5J7L_049
NA
J3_5KCR_0151/1a/46:47,
1/1a/361:367,
1/1a/393:395
No text annotation
Not in a motif group
homologous
J3_5J7L_001
NA
J3_5KCR_0161/1a/586:588,
1/1a/651:654,
1/1a/754:755
No text annotation
Not in a motif group
homologous
J3_5J7L_002
NA
J3_5KCR_0171/1a/826:829,
1/1a/857:861,
1/1a/868:874
No text annotation
Not in a motif group
homologous
J3_5J7L_004
NA
J3_5KCR_0181/1a/943:946,
1/1a/1235:1237,
1/1a/1337:1340
No text annotation
Not in a motif group
homologous
J3_5J7L_005
NA
J3_5KCR_0191/1a/955:962,
1/1a/973:984,
1/1a/1221:1225
No text annotation
Not in a motif group
J3_5KCR_0201/1a/990:993,
1/1a/1045:1047,
1/1a/1210:1215
No text annotation
Not in a motif group
homologous
J3_5J7L_007
NA
J3_5KCR_0211/1a/1063:1068,
1/1a/1107:1113,
1/1a/1187:1193
No text annotation
Not in a motif group
J3_5KCR_0221/1a/1073:1074,
1/1a/1083:1087,
1/1a/1098:1102
No text annotation
Not in a motif group
homologous
J3_5J7L_009
NA
J3_5KCR_0231/1a/1116:1118,
1/1a/1155:1158,
1/1a/1181:1184
No text annotation
Not in a motif group
homologous
J3_5J7L_010
NA
J3_5KCR_0241/1a/1237:1241,
1/1a/1296:1303,
1/1a/1334:1337
No text annotation
Not in a motif group

Problematic loops

No problematic loops


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