5LMN | Motifs

32 Hairpin loops
61 Internal loops
13 Junction loops

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	HL_5LMN_001	1/A/12:22	NA	NA
2	HL_5LMN_003	1/A/158:163	NA	NA
3	HL_5LMN_004	1/A/189C:189H	NA	NA
4	HL_5LMN_005	1/A/201:216	NA	NA
5	HL_5LMN_006	1/A/259:267	NA	NA
6	HL_5LMN_007	1/A/296:301	NA	NA
7	HL_5LMN_008	1/A/320:333	NA	NA
8	HL_5LMN_010	1/A/379:384	NA	NA
9	HL_5LMN_011	1/A/419:424	NA	NA
10	HL_5LMN_012	1/A/458:473	NA	NA
11	HL_5LMN_013	1/A/522:527	NA	NA
12	HL_5LMN_014	1/A/617:623	NA	NA
13	HL_5LMN_015	1/A/689:698	NA	NA
14	HL_5LMN_016	1/A/726:731	NA	NA
15	HL_5LMN_017	1/A/786:796	NA	NA
16	HL_5LMN_018	1/A/838:848	NA	NA
17	HL_5LMN_019	1/A/862:867	NA	NA
18	HL_5LMN_020	1/A/897:902	NA	NA
19	HL_5LMN_021	1/A/963:972	NA	NA
20	HL_5LMN_022	1/A/1012:1017	NA	NA
21	HL_5LMN_024	1/A/1076:1081	NA	NA
22	HL_5LMN_025	1/A/1089:1096	NA	NA
23	HL_5LMN_026	1/A/1134:1140	NA	NA
24	HL_5LMN_027	1/A/1165:1171	NA	NA
25	HL_5LMN_028	1/A/1265:1270	NA	NA
26	HL_5LMN_029	1/A/1314:1323	NA	NA
27	HL_5LMN_031	1/A/1445:1457	NA	NA
28	HL_5LMN_032	1/A/1515:1520	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_5LMN_002	missing nts	NA
2	HL_5LMN_009	missing nts	NA
3	HL_5LMN_023	missing nts	NA
4	HL_5LMN_030	missing nts	NA

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	IL_5LMN_001	1/A/30:32, 1/A/552:553	NA	NA
2	IL_5LMN_002	1/A/44:45, 1/A/396:398	NA	NA
3	IL_5LMN_003	1/A/47:52, 1/A/359:361	NA	NA
4	IL_5LMN_004	1/A/54:56, 1/A/356:357	NA	NA
5	IL_5LMN_005	1/A/63:66, 1/A/103:104	NA	NA
6	IL_5LMN_006	1/A/67:69, 1/A/100:102	NA	NA
7	IL_5LMN_007	1/A/129:131, 1/A/231:232	NA	NA
8	IL_5LMN_008	1/A/132:136, 1/A/227:230	NA	NA
9	IL_5LMN_009	1/A/148:153, 1/A/168:174	NA	NA
10	IL_5LMN_010	1/A/186:188, 1/A/189L:191	NA	NA
11	IL_5LMN_011	1/A/242:247, 1/A/277:284	NA	NA
12	IL_5LMN_012	1/A/249:252, 1/A/274:275	NA	NA
13	IL_5LMN_013	1/A/292:293, 1/A/304:308	NA	NA
14	IL_5LMN_014	1/A/367:369, 1/A/392:393	NA	NA
15	IL_5LMN_015	1/A/371:375, 1/A/389:390	NA	NA
16	IL_5LMN_016	1/A/375:376, 1/A/387:389	NA	NA
17	IL_5LMN_017	1/A/409:416, 1/A/427:433	NA	NA
18	IL_5LMN_018	1/A/446:450, 1/A/483:488	NA	NA
19	IL_5LMN_019	1/A/450:455, 1/A/476:483	NA	NA
20	IL_5LMN_020	1/A/504:511, 1/A/540:541	NA	NA
21	IL_5LMN_021	1/A/515:521, 1/A/528:536	NA	NA
22	IL_5LMN_022	1/A/569:575, 1/A/880:881	NA	NA
23	IL_5LMN_023	1/A/580:584, 1/A/757:761	NA	NA
24	IL_5LMN_024	1/A/594:596, 1/A/644:645	NA	NA
25	IL_5LMN_025	1/A/597:598, 1/A/640:643	NA	NA
26	IL_5LMN_026	1/A/605:612, 1/A/628:633	NA	NA
27	IL_5LMN_027	1/A/654:655, 1/A/751:754	NA	NA
28	IL_5LMN_028	1/A/657:658, 1/A/747:749	NA	NA
29	IL_5LMN_029	1/A/662:666, 1/A/740:743	NA	NA
30	IL_5LMN_030	1/A/673:678, 1/A/712:717	NA	NA
31	IL_5LMN_031	1/A/683:688, 1/A/699:707	NA	NA
32	IL_5LMN_032	1/A/774:778, 1/A/804:805	NA	NA
33	IL_5LMN_033	1/A/779:783, 1/A/799:803	NA	NA
34	IL_5LMN_034	1/A/887:894, 1/A/905:910	NA	NA
35	IL_5LMN_035	1/A/922:923, 1/A/1393:1395	NA	NA
36	IL_5LMN_036	1/A/925:927, 1/A/1390:1391	NA	NA
37	IL_5LMN_037	1/A/933:935, 1/A/1380:1384	NA	NA
38	IL_5LMN_038	1/A/953:954, 1/A/1226:1228	NA	NA
39	IL_5LMN_040	1/A/1048:1050, 1/A/1208:1209	NA	NA
40	IL_5LMN_041	1/A/1052:1056, 1/A/1204:1206	NA	NA
41	IL_5LMN_042	1/A/1057:1058, 1/A/1199:1203	NA	NA
42	IL_5LMN_043	1/A/1060:1061, 1/A/1195:1197	NA	NA
43	IL_5LMN_044	1/A/1061:1063, 1/A/1193:1195	NA	NA
44	IL_5LMN_045	1/A/1124:1128, 1/A/1143:1149	NA	NA
45	IL_5LMN_046	1/A/1128:1132, 1/A/1142:1143	NA	NA
46	IL_5LMN_047	1/A/1158:1161, 1/A/1175:1181	NA	NA
47	IL_5LMN_048	1/A/1247:1253, 1/A/1284:1290	NA	NA
48	IL_5LMN_049	1/A/1255:1258, 1/A/1277:1282	NA	NA
49	IL_5LMN_050	1/A/1259:1260, 1/A/1274:1276	NA	NA
50	IL_5LMN_051	1/A/1260:1262, 1/A/1273:1274	NA	NA
51	IL_5LMN_052	1/A/1303:1308, 1/A/1329:1334	NA	NA
52	IL_5LMN_053	1/A/1399:1401, 1/A/1501:1504	NA	NA
53	IL_5LMN_054	1/A/1401:1404, 1/A/1497:1501	NA	NA
54	IL_5LMN_055	1/A/1405:1407, 1/A/1494:1496	NA	NA
55	IL_5LMN_056	1/A/1407:1409, 1/A/1491:1494	NA	NA
56	IL_5LMN_057	1/A/1412:1414, 1/A/1486:1488	NA	NA
57	IL_5LMN_058	1/A/1416:1419, 1/A/1481:1484	NA	NA
58	IL_5LMN_059	1/A/1431:1435, 1/A/1466:1469	NA	NA
59	IL_5LMN_060	1/A/1435:1437, 1/A/1464:1466	NA	NA
60	IL_5LMN_061	1/A/1440:1443, 1/A/1459:1461	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_5LMN_039	missing nts	NA

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	J3_5LMN_001	1/A/46:47, 1/A/361:367, 1/A/393:395	NA	NA
2	J3_5LMN_002	1/A/586:588, 1/A/651:654, 1/A/754:755	NA	NA
3	J3_5LMN_003	1/A/672:673, 1/A/717:725, 1/A/732:734	NA	NA
4	J3_5LMN_004	1/A/826:829, 1/A/857:861, 1/A/868:874	NA	NA
5	J3_5LMN_005	1/A/936:939, 1/A/1344:1350, 1/A/1372:1379	NA	NA
6	J3_5LMN_006	1/A/943:946, 1/A/1235:1237, 1/A/1337:1340	NA	NA
7	J3_5LMN_007	1/A/955:962, 1/A/973:984, 1/A/1221:1225	NA	NA
8	J3_5LMN_008	1/A/990:997, 1/A/1044:1047, 1/A/1210:1215	NA	NA
9	J3_5LMN_010	1/A/1063:1068, 1/A/1107:1113, 1/A/1187:1193	NA	NA
10	J3_5LMN_011	1/A/1073:1074, 1/A/1083:1087, 1/A/1098:1102	NA	NA
11	J3_5LMN_012	1/A/1116:1118, 1/A/1155:1158, 1/A/1181:1184	NA	NA
12	J3_5LMN_013	1/A/1237:1241, 1/A/1296:1303, 1/A/1334:1337	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	J3_5LMN_009	missing nts	NA

Coloring options: Nucleotide numbers

5LMN Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops