5LZU Summary
- Structure Title
- 5LZU Summary
- Authors
- Release Date
- 2016-11-30
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
- Chains
-
- 7 RNA chains from Oryctolagus cuniculus
- 78 other chains
- Compounds
- P-site tRNA, E-site tRNA, 28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 18S ribosomal RNA, uL2, uS2, uL3, 40S ribosomal protein S3a, uL4, uS5, 60S ribosomal protein L5, uS3, 60S ribosomal protein L6, 40S ribosomal protein S4, uL30, uS7, eL8, 40S ribosomal protein S6, uL6, eS7, uL16, 40S ribosomal protein S8, uL5, Ribosomal protein S9 (Predicted), eS10, eL13, uS17, eL14, 40S ribosomal protein S12, Ribosomal protein L15, uS15, uL13, uS11, uL22, uS19, eL18, uS9, eL19, eS17, eL20, uS13, eL21, eS19, eL22, uS10, uL14, eS21, eL24, uS8, uL23, uS12, uL24, eS24, 60S ribosomal protein L27, eS25, uL15, eS26, eL29, 40S ribosomal protein S27, eL30, eS28, eL31, uS14, eL32, eS30, eL33, eS31, eL34, RACK1, uL29, mRNA (UGA stop codon), 60S ribosomal protein L36, Eukaryotic peptide chain release factor subunit 1, Ribosomal protein L37, eL38, eL39, eL40, 60s ribosomal protein l41, eL42, eL43, eL28, uL10, uL11
Pairwise Interactions
Interactions annotated by FR3D:- 2,219 base-pairs
- 5,823 base-stacking
- 2,291 base-phosphate
- 276 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 5LZU contains:- 267 internal loops from 0 motif groups
- 117 hairpin loops from 0 motif groups
- 32 three-way junctions
3D Redundancy
5LZU has chains which belong to the following equivalence classes in the current representative set:- NR_20.0_06650.27 (1)
- NR_20.0_21280.26 (1)
- NR_20.0_68467.10 (1)
- NR_20.0_36843.2 (1)
- NR_20.0_10255.27 (1)
- NR_4.0_06650.27 (1)
- NR_4.0_21280.26 (1)
- NR_4.0_68467.10 (1)
- NR_4.0_36843.2 (1)
- NR_4.0_10255.27 (1)
- NR_all_06650.27 (1)
- NR_all_21280.26 (1)
- NR_all_68467.10 (1)
- NR_all_36843.2 (1)
- NR_all_10255.27 (1)