5M1J Summary
- Structure Title
- 5M1J Summary
- Authors
- Release Date
- 2017-01-18
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
- Chains
-
- 6 RNA chains from Saccharomyces cerevisiae, synthetic construct
- 76 other chains
- Compounds
- 25S ribosomal RNA, 18S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, Protein DOM34, 40S ribosomal protein S0-A, yeast Phe-tRNA-Phe, 60S ribosomal protein L2-A, Protein HBS1, 40S ribosomal protein S1-A, 60S ribosomal protein L3, 40S ribosomal protein S2, 60S ribosomal protein L4-A, 40S ribosomal protein S3, 60S ribosomal protein L5, 40S ribosomal protein S4-A, 60S ribosomal protein L6-A, 40S ribosomal protein S5, 60S ribosomal protein L7-A, 40S ribosomal protein S6-A, 60S ribosomal protein L8-A, 40S ribosomal protein S7-A, 60S ribosomal protein L9-A, 40S ribosomal protein S8-A, 60S ribosomal protein L10, 40S ribosomal protein S9-A, 60S ribosomal protein L11-A, 40S ribosomal protein S10-A, 60S ribosomal protein L16-A, 40S ribosomal protein S11-A, 60S ribosomal protein L13-A, 40S ribosomal protein S12, 60S ribosomal protein L14-A, 40S ribosomal protein S13, 60S ribosomal protein L15-A, 40S ribosomal protein S14-A, 40S ribosomal protein S15, 60S ribosomal protein L17-A, 40S ribosomal protein S16-A, 60S ribosomal protein L18-A, 40S ribosomal protein S17-B, 60S ribosomal protein L19-A, 40S ribosomal protein S18-A, 60S ribosomal protein L20-A, 40S ribosomal protein S19-A, 60S ribosomal protein L21-A, 40S ribosomal protein S20, 60S ribosomal protein L22-A, 40S ribosomal protein S21-A, 60S ribosomal protein L23-A, 40S ribosomal protein S22-A, 60S ribosomal protein L24-A, 40S ribosomal protein S23-A, 60S ribosomal protein L25, nonstop mRNA, 40S ribosomal protein S24-A, 60S ribosomal protein L26-A, 40S ribosomal protein S25-A, 60S ribosomal protein L27-A, 40S ribosomal protein S26-B, 60S ribosomal protein L28, 40S ribosomal protein S27-A, 60S ribosomal protein L29, 40S ribosomal protein S28-B, 60S ribosomal protein L30, 40S ribosomal protein S29-A, 60S ribosomal protein L31-A, 40S ribosomal protein S30-A, 60S ribosomal protein L32, Ubiquitin-40S ribosomal protein S31, 60S ribosomal protein L33-A, Guanine nucleotide-binding protein subunit beta-like protein, 60S ribosomal protein L34-A, 60S ribosomal protein L35-A, 60S ribosomal protein L36-A, 60S ribosomal protein L37-A, 60S ribosomal protein L38, 60S ribosomal protein L39, Ubiquitin-60S ribosomal protein L40, 60S ribosomal protein L41-B, 60S ribosomal protein L42-B, 60S ribosomal protein L43-B
Pairwise Interactions
Interactions annotated by FR3D:- 1,967 base-pairs
- 5,262 base-stacking
- 2,263 base-phosphate
- 233 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 5M1J contains:- 230 internal loops from 0 motif groups
- 117 hairpin loops from 0 motif groups
- 30 three-way junctions
3D Redundancy
5M1J has chains which belong to the following equivalence classes in the current representative set:- NR_20.0_90506.47 (1)
- NR_20.0_83593.2 (1)
- NR_20.0_03510.42 (1)
- NR_20.0_18586.44 (1)
- NR_3.5_90506.47 (1)
- NR_3.5_83593.2 (1)
- NR_3.5_03510.42 (1)
- NR_3.5_18586.44 (1)
- NR_4.0_90506.47 (1)
- NR_4.0_83593.2 (1)
- NR_4.0_03510.42 (1)
- NR_4.0_18586.44 (1)
- NR_all_90506.47 (1)
- NR_all_83593.2 (1)
- NR_all_03510.42 (1)
- NR_all_18586.44 (1)
Similar structures
5TBW 4U56 6OIG 6N8J 6QTZ 5APO 6N8K 6N8L 6R84 6SV4 4U56 6N8N 6S05 6T83 5JUO 5JUT 6T83 5JUU 6GQB 5MC6 7NRC 6SV4 6SV4 6Z6J 6Z6K 4U50 6M62 5H4P 6R87 4U50 4U55 6R86 6RI5 7OF1 7OH3 4U53 6N8O 6N8M 4U53 6QT0 6HD7 5JUP 4U51 6GQV 5FL8 3J6Y 7OHS 6EM4 6C0F 6I7O 6I7O 7OHR 7OHP 3J6X 3J77 3J78 5JCS 4V6I 4V7F 4V8T 4V8Z 5Z3G 6CB1 7OHT 7OHW 7OHY 4U4O 4U4O 6YLY 5T6R 5APN 6XIQ 6ELZ 5JUS 7NRD 4V8Y 6GQ1 7OHU 6EM3 6EM5 6EM1 7OHV 7OHX 5GAK 6YLX 6FT6 4U51 6TB3 5DAT 5DGV 5DAT 4V7R 4V7R 5TGM 5TGM 5NDG 5DGV 5DGE 5TGA 6WOO 6T4Q 5DC3 5DC3 5DGE 5DGF 5TGA 5DGF 5NDG 5NDW 6HHQ 5MEI 5MEI 5I4L 5I4L 7OSA 4V88 4V88 6HHQ 5OBM 5OBM 5NDW 5NDV 7OSM 5ON6 5LYB 5ON6 5NDV 5LYB 5TBW 6SNT 6S47 4U4N 4U4Z 6TNU 4U4N 6XIR 7B7D 6QIK 4U4Z 6RZZ 6T7I 4U4Y 4U55 4U3N 3JCT 4U4Y 4U3N 7BTB 7BT6 4U6F 6T7T 4U4Q 6YLG 4U3M 5T62 4U3U 4U3U 4U4R 4U4R 4U3M 4U4U 4U4Q 4U6F 6YLH 7OHQ 6Q8Y 7RR5 4U52 4U52 4U4U 7AZYStructures from NR_all_90506.47