5MC6 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
# | loop id | location | motif |
---|---|---|---|
1 | ➜ | 1/2/24:26,1/2/600:601 | NA |
2 | ➜ | 1/2/35:37,1/2/471:473 | NA |
3 | ➜ | 1/2/37:41,1/2/466:471 | NA |
4 | ➜ | 1/2/42:52,1/2/428:433 | NA |
5 | ➜ | 1/2/58:63,1/2/87:89 | NA |
6 | ➜ | 1/2/64:69,1/2/82:86 | NA |
7 | ➜ | 1/2/109:112,1/2/302:305 | NA |
8 | ➜ | 1/2/113:117,1/2/299:301 | NA |
9 | ➜ | 1/2/117:122,1/2/295:299 | NA |
10 | ➜ | 1/2/143:149,1/2/165:172 | NA |
11 | ➜ | 1/2/150:152,1/2/162:164 | NA |
12 | ➜ | 1/2/186:189,1/2/196:199 | NA |
13 | ➜ | 1/2/204:206,1/2/259:263 | NA |
14 | ➜ | 1/2/206:208,1/2/257:259 | NA |
15 | ➜ | 1/2/265:267,1/2/288:289 | NA |
16 | ➜ | 1/2/270:274,1/2/282:285 | NA |
17 | ➜ | 1/2/275:276,1/2/279:281 | NA |
18 | ➜ | 1/2/311:316,1/2/348:355 | NA |
19 | ➜ | 1/2/318:323,1/2/345:346 | NA |
20 | ➜ | 1/2/389:391,1/2/406:408 | NA |
21 | ➜ | 1/2/411:413,1/2/420:422 | NA |
22 | ➜ | 1/2/439:441,1/2/463:464 | NA |
23 | ➜ | 1/2/443:447,1/2/460:461 | NA |
24 | ➜ | 1/2/447:448,1/2/458:460 | NA |
25 | ➜ | 1/2/481:483,1/2/504:507 | NA |
26 | ➜ | 1/2/517:518,1/2/533:535 | NA |
27 | ➜ | 1/2/518:520,1/2/532:533 | NA |
28 | ➜ | 1/2/616:622,1/2/1104:1105 | NA |
29 | ➜ | 1/2/624:626,1/2/973:975 | NA |
30 | ➜ | 1/2/627:632,1/2/967:972 | NA |
31 | ➜ | 1/2/865:866,1/2/962:965 | NA |
32 | ➜ | 1/2/868:870,1/2/957:960 | NA |
33 | ➜ | 1/2/871:874,1/2/953:956 | NA |
34 | ➜ | 1/2/874:878,1/2/950:953 | NA |
35 | ➜ | 1/2/886:888,1/2/924:926 | NA |
36 | ➜ | 1/2/1034:1036,1/2/1095:1101 | NA |
37 | ➜ | 1/2/1041:1044,1/2/1074:1077 | NA |
38 | ➜ | 1/2/1051:1053,1/2/1066:1067 | NA |
39 | ➜ | 1/2/1157:1160,1/2/1617:1621 | NA |
40 | ➜ | 1/2/1173:1175,1/2/1464:1466 | NA |
41 | ➜ | 1/2/1177:1179,1/2/1459:1462 | NA |
42 | ➜ | 1/BQ/7:8,1/BS/150:152 | NA |
43 | ➜ | 1/BQ/13:15,1/BS/144:145 | NA |
44 | ➜ | 1/BQ/31:38,1/BQ/45:53 | NA |
45 | ➜ | 1/BQ/82:89,1/BQ/97:103 | NA |
46 | ➜ | 1/BQ/123:124,1/BQ/144:149 | NA |
47 | ➜ | 1/BQ/125:127,1/BQ/141:143 | NA |
48 | ➜ | 1/BQ/163:166,1/BQ/256:258 | NA |
49 | ➜ | 1/BQ/169:171,1/BQ/247:253 | NA |
50 | ➜ | 1/BQ/177:178,1/BQ/238:241 | NA |
51 | ➜ | 1/BQ/189:191,1/BQ/204:205 | NA |
52 | ➜ | 1/BQ/337:339,1/BS/25:26 | NA |
53 | ➜ | 1/BQ/376:379,1/BQ/390:403 | NA |
54 | ➜ | 1/BQ/404:410,1/BS/13:19 | NA |
55 | ➜ | 1/BQ/429:432,1/BQ/627:630 | NA |
56 | ➜ | 1/BQ/512:513,1/BQ/577:579 | NA |
57 | ➜ | 1/BQ/517:525,1/BQ/567:573 | NA |
58 | ➜ | 1/BQ/531:539,1/BQ/552:561 | NA |
59 | ➜ | 1/BQ/668:670,1/BQ/792:794 | NA |
60 | ➜ | 1/BQ/680:684,1/BQ/696:700 | NA |
61 | ➜ | 1/BQ/725:729,1/BQ/740:745 | NA |
62 | ➜ | 1/BQ/752:753,1/BQ/779:781 | NA |
63 | ➜ | 1/BQ/755:756,1/BQ/775:777 | NA |
64 | ➜ | 1/BQ/758:763,1/BQ/768:773 | NA |
65 | ➜ | 1/BQ/803:805,1/BQ/938:940 | NA |
66 | ➜ | 1/BQ/805:809,1/BQ/931:938 | NA |
67 | ➜ | 1/BQ/833:834,1/BQ/859:861 | NA |
68 | ➜ | 1/BQ/834:838,1/BQ/855:859 | NA |
69 | ➜ | 1/BQ/869:872,1/BQ/888:890 | NA |
70 | ➜ | 1/BQ/873:875,1/BQ/886:887 | NA |
71 | ➜ | 1/BQ/907:909,1/BQ/919:923 | NA |
72 | ➜ | 1/BQ/954:956,1/BQ/965:967 | NA |
73 | ➜ | 1/BQ/969:970,1/BQ/1111:1113 | NA |
74 | ➜ | 1/BQ/977:981,1/BQ/1102:1104 | NA |
75 | ➜ | 1/BQ/983:985,1/BQ/1099:1100 | NA |
76 | ➜ | 1/BQ/991:997,1/BQ/1052:1058 | NA |
77 | ➜ | 1/BQ/997:998,1/BQ/1050:1052 | NA |
78 | ➜ | 1/BQ/999:1004,1/BQ/1046:1049 | NA |
79 | ➜ | 1/BQ/1005:1009,1/BQ/1041:1045 | NA |
80 | ➜ | 1/BQ/1009:1011,1/BQ/1039:1041 | NA |
81 | ➜ | 1/BQ/1013:1018,1/BQ/1034:1037 | NA |
82 | ➜ | 1/BQ/1069:1071,1/BQ/1087:1089 | NA |
83 | ➜ | 1/BQ/1074:1076,1/BQ/1083:1084 | NA |
84 | ➜ | 1/BQ/1120:1122,1/BQ/1136:1138 | NA |
85 | ➜ | 1/BQ/1167:1171,1/BQ/1328:1332 | NA |
86 | ➜ | 1/BQ/1173:1180,1/BQ/1325:1326 | NA |
87 | ➜ | 1/BQ/1180:1182,1/BQ/1324:1325 | NA |
88 | ➜ | 1/BQ/1187:1194,1/BQ/1314:1319 | NA |
89 | ➜ | 1/BQ/1194:1205,1/BQ/1299:1314 | NA |
90 | ➜ | 1/BQ/1207:1209,1/BQ/1296:1297 | NA |
91 | ➜ | 1/BQ/1218:1226,1/BQ/1283:1287 | NA |
92 | ➜ | 1/BQ/1376:1378,1/BQ/1428:1431 | NA |
93 | ➜ | 1/BQ/1385:1387,1/BQ/1420:1421 | NA |
94 | ➜ | 1/BQ/1388:1395,1/BQ/1415:1419 | NA |
95 | ➜ | 1/BQ/1398:1400,1/BQ/1411:1412 | NA |
96 | ➜ | 1/BQ/1444:1450,1/BQ/2354:2359 | NA |
97 | ➜ | 1/BQ/1500:1505,1/BQ/1513:1516 | NA |
98 | ➜ | 1/BQ/1532:1536,1/BQ/1585:1590 | NA |
99 | ➜ | 1/BQ/1560:1563,1/BQ/1577:1579 | NA |
100 | ➜ | 1/BQ/1618:1621,1/BQ/1824:1826 | NA |
101 | ➜ | 1/BQ/1623:1624,1/BQ/1819:1822 | NA |
102 | ➜ | 1/BQ/1627:1631,1/BQ/1811:1816 | NA |
103 | ➜ | 1/BQ/1645:1649,1/BQ/1806:1810 | NA |
104 | ➜ | 1/BQ/1661:1663,1/BQ/1786:1788 | NA |
105 | ➜ | 1/BQ/1669:1670,1/BQ/1778:1780 | NA |
106 | ➜ | 1/BQ/1670:1671,1/BQ/1776:1778 | NA |
107 | ➜ | 1/BQ/1694:1698,1/BQ/1747:1752 | NA |
108 | ➜ | 1/BQ/1702:1707,1/BQ/1737:1743 | NA |
109 | ➜ | 1/BQ/1711:1717,1/BQ/1727:1733 | NA |
110 | ➜ | 1/BQ/1883:1889,1/BQ/2346:2349 | NA |
111 | ➜ | 1/BQ/1895:1897,1/BQ/2338:2340 | NA |
112 | ➜ | 1/BQ/1898:1901,1/BQ/2336:2337 | NA |
113 | ➜ | 1/BQ/1901:1906,1/BQ/2333:2336 | NA |
114 | ➜ | 1/BQ/1918:1923,1/BQ/1928:1934 | NA |
115 | ➜ | 1/BQ/1940:1942,1/BQ/2106:2108 | NA |
116 | ➜ | 1/BQ/1947:1948,1/BQ/2098:2101 | NA |
117 | ➜ | 1/BQ/2128:2129,1/BQ/2323:2325 | NA |
118 | ➜ | 1/BQ/2156:2161,1/BQ/2173:2180 | NA |
119 | ➜ | 1/BQ/2196:2199,1/BQ/2245:2246 | NA |
120 | ➜ | 1/BQ/2200:2201,1/BQ/2241:2244 | NA |
121 | ➜ | 1/BQ/2204:2206,1/BQ/2237:2238 | NA |
122 | ➜ | 1/BQ/2206:2210,1/BQ/2235:2237 | NA |
123 | ➜ | 1/BQ/2211:2217,1/BQ/2228:2234 | NA |
124 | ➜ | 1/BQ/2276:2277,1/BQ/2307:2310 | NA |
125 | ➜ | 1/BQ/2277:2288,1/BQ/2304:2307 | NA |
126 | ➜ | 1/BQ/2391:2394,1/BQ/2986:2988 | NA |
127 | ➜ | 1/BQ/2396:2398,1/BQ/2981:2984 | NA |
128 | ➜ | 1/BQ/2409:2411,1/BQ/2811:2812 | NA |
129 | ➜ | 1/BQ/2412:2413,1/BQ/2807:2810 | NA |
130 | ➜ | 1/BQ/2423:2425,1/BQ/2604:2607 | NA |
131 | ➜ | 1/BQ/2520:2526,1/BQ/2584:2587 | NA |
132 | ➜ | 1/BQ/2614:2615,1/BQ/2625:2627 | NA |
133 | ➜ | 1/BQ/2666:2668,1/BQ/2686:2690 | NA |
134 | ➜ | 1/BQ/2718:2721,1/BQ/2735:2738 | NA |
135 | ➜ | 1/BQ/2770:2773,1/BQ/2787:2788 | NA |
136 | ➜ | 1/BQ/2823:2824,1/BQ/2865:2867 | NA |
137 | ➜ | 1/BQ/2824:2826,1/BQ/2863:2865 | NA |
138 | ➜ | 1/BQ/2826:2830,1/BQ/2858:2863 | NA |
139 | ➜ | 1/BQ/2835:2839,1/BQ/2849:2853 | NA |
140 | ➜ | 1/BQ/2876:2877,1/BQ/2949:2951 | NA |
141 | ➜ | 1/BQ/2879:2881,1/BQ/2943:2947 | NA |
142 | ➜ | 1/BQ/2881:2882,1/BQ/2940:2943 | NA |
143 | ➜ | 1/BQ/2889:2891,1/BQ/2912:2914 | NA |
144 | ➜ | 1/BQ/2891:2892,1/BQ/2909:2912 | NA |
145 | ➜ | 1/BQ/2918:2920,1/BQ/2926:2928 | NA |
146 | ➜ | 1/BQ/2960:2961,1/BQ/2970:2972 | NA |
147 | ➜ | 1/BQ/3004:3007,1/BQ/3139:3144 | NA |
148 | ➜ | 1/BQ/3012:3014,1/BQ/3040:3042 | NA |
149 | ➜ | 1/BQ/3018:3025,1/BQ/3030:3036 | NA |
150 | ➜ | 1/BQ/3046:3051,1/BQ/3091:3095 | NA |
151 | ➜ | 1/BQ/3054:3059,1/BQ/3084:3088 | NA |
152 | ➜ | 1/BQ/3063:3064,1/BQ/3077:3080 | NA |
153 | ➜ | 1/BQ/3103:3107,1/BQ/3127:3131 | NA |
154 | ➜ | 1/BQ/3164:3166,1/BQ/3284:3286 | NA |
155 | ➜ | 1/BQ/3168:3170,1/BQ/3280:3282 | NA |
156 | ➜ | 1/BQ/3177:3179,1/BQ/3210:3211 | NA |
157 | ➜ | 1/BQ/3179:3188,1/BQ/3204:3210 | NA |
158 | ➜ | 1/BQ/3193:3194,1/BQ/3197:3199 | NA |
159 | ➜ | 1/BQ/3225:3229,1/BQ/3258:3260 | NA |
160 | ➜ | 1/BQ/3233:3235,1/BQ/3252:3254 | NA |
161 | ➜ | 1/BQ/3235:3238,1/BQ/3249:3252 | NA |
162 | ➜ | 1/BQ/3300:3303,1/BQ/3311:3314 | NA |
163 | ➜ | 1/BQ/3318:3320,1/BQ/3387:3388 | NA |
164 | ➜ | 1/BQ/3324:3325,1/BQ/3381:3383 | NA |
165 | ➜ | 1/BQ/3328:3330,1/BQ/3373:3378 | NA |
166 | ➜ | 1/BQ/3332:3337,1/BQ/3367:3371 | NA |
167 | ➜ | 1/BQ/3340:3342,1/BQ/3363:3364 | NA |
168 | ➜ | 1/BQ/3342:3345,1/BQ/3360:3363 | NA |
169 | ➜ | 1/BQ/3349:3350,1/BQ/3353:3356 | NA |
170 | ➜ | 1/BR/15:16,1/BR/63:65 | NA |
171 | ➜ | 1/BR/21:27,1/BR/53:58 | NA |
172 | ➜ | 1/BR/28:29,1/BR/49:52 | NA |
173 | ➜ | 1/BR/29:30,1/BR/47:49 | NA |
174 | ➜ | 1/BR/32:36,1/BR/41:45 | NA |
175 | ➜ | 1/BR/72:80,1/BR/100:106 | NA |
176 | ➜ | 1/BR/84:87,1/BR/94:96 | NA |
177 | ➜ | 1/BS/44:64,1/BS/96:100 | NA |
178 | ➜ | 1/BS/64:66,1/BS/93:96 | NA |
179 | ➜ | 1/BS/68:69,1/BS/89:91 | NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
1 | ➜ | 361, 362, 363, 364, 365, 376, 377, 378, 379, 380, 381, 382, 383 | |
2 | ➜ | 550, 551, 552, 553, 554, 555, 556, 557, 587, 588 | |
3 | ➜ | 557, 558, 559, 586, 587 | |
4 | ➜ | 562, 563, 564, 565, 566, 567, 568, 575, 576, 577, 578, 579, 580, 581, 582, 583 | |
5 | ➜ | 646, 647, 648, 686, 687, 688 | |
6 | ➜ | 701, 702, 703, 736, 737 | |
7 | ➜ | 746, 747, 802, 803, 804, 805 | |
8 | ➜ | 748, 749, 750, 799, 800, 801 | |
9 | ➜ | 751, 752, 753, 754, 755, 756, 757, 758, 759, 791, 792, 793, 794, 795, 796, 797, 798 | |
10 | ➜ | 817, 818, 819, 820, 821, 822, 850, 851, 852, 853, 854 | |
11 | ➜ | 893, 894, 895, 896, 897, 898, 899, 910, 911, 912, 913, 914, 915, 916, 917, 918, 919 | |
12 | ➜ | 985, 986, 987, 988, 989, 990, 1014, 1015, 1016 | |
13 | ➜ | 990, 991, 992, 993, 994, 1010, 1011, 1012, 1013, 1014 | |
14 | ➜ | 1111, 1112, 1113, 1114, 1115, 1116, 1117, 1118, 1129, 1130, 1131, 1132, 1133, 1134 | |
15 | ➜ | 1146, 1147, 1630, 1631, 1632 | |
16 | ➜ | 1149, 1150, 1151, 1627, 1628 | |
17 | ➜ | 1213, 1214, 1215, 1448, 1449, 1450 | |
18 | ➜ | 1222, 1223, 1224, 1225, 1226, 1227, 1228, 1229, 1230, 1257, 1258, 1259, 1260, 1261 | |
19 | ➜ | 1230, 1231, 1232, 1233, 1252, 1253, 1254, 1255, 1256, 1257 | |
20 | ➜ | 1234, 1235, 1236, 1249, 1250, 1251 | |
21 | ➜ | 1268, 1269, 1270, 1440, 1441 | |
22 | ➜ | 1272, 1273, 1274, 1275, 1276, 1436, 1437, 1438 | |
23 | ➜ | 1276, 1277, 1278, 1430, 1431, 1432, 1433, 1434, 1435, 1436 | |
24 | ➜ | 1280, 1281, 1426, 1427, 1428 | |
25 | ➜ | 1290, 1291, 1292, 1323, 1324, 1325 | |
26 | ➜ | 1306, 1307, 1308, 1317, 1318 | |
27 | ➜ | 1339, 1340, 1341, 1342, 1383, 1384, 1385 | |
28 | ➜ | 1345, 1346, 1347, 1348, 1377, 1378, 1379, 1380 | |
29 | ➜ | 1352, 1353, 1354, 1369, 1370, 1371, 1372, 1373 | |
30 | ➜ | 1389, 1390, 1391, 1407, 1408, 1409, 1410, 1411, 1412 | |
31 | ➜ | 1488, 1489, 1490, 1491, 1492, 1493, 1494, 1513, 1514, 1515, 1516, 1517, 1518 | |
32 | ➜ | 1495, 1496, 1497, 1498, 1509, 1510, 1511, 1512 | |
33 | ➜ | 1636, 1637, 1638, 1764, 1765, 1766, 1767 | |
34 | ➜ | 1638, 1639, 1640, 1641, 1760, 1761, 1762, 1763, 1764 | |
35 | ➜ | 1642, 1643, 1644, 1757, 1758, 1759 | |
36 | ➜ | 1644, 1645, 1646, 1647, 1753, 1754, 1755, 1756, 1757 | |
37 | ➜ | 1650, 1651, 1652, 1748, 1749, 1750 | |
38 | ➜ | 1653, 1654, 1655, 1656, 1744, 1745, 1746, 1747 | |
39 | ➜ | 1656, 1657, 1658, 1743, 1744 | |
40 | ➜ | 1665, 1666, 1667, 1734, 1735, 1736 | |
41 | ➜ | 1669, 1670, 1671, 1672, 1729, 1730, 1731, 1732 | |
42 | ➜ | 1672, 1673, 1674, 1727, 1728, 1729 | |
43 | ➜ | 1675, 1676, 1677, 1678, 1723, 1724, 1725, 1726 | |
44 | ➜ | 1678, 1679, 1680, 1681, 1682, 1719, 1720, 1721, 1722, 1723 | |
45 | ➜ | 435, 436, 437, 438, 439, 440, 494, 495, 618, 619, 620, 621, 622, 623, 624 | |
46 | ➜ | 1564, 1565, 1574, 1575, 1576 | |
47 | ➜ | 2444, 2445, 2501, 2502, 2503 |
Valid loops
# | loop id | location | motif |
---|---|---|---|
1 | ➜ | 1/2/70:81 | NA |
2 | ➜ | 1/2/154:160 | NA |
3 | ➜ | 1/2/190:195 | NA |
4 | ➜ | 1/2/243:250 | NA |
5 | ➜ | 1/2/276:279 | NA |
6 | ➜ | 1/2/330:338 | NA |
7 | ➜ | 1/2/368:373 | NA |
8 | ➜ | 1/2/393:404 | NA |
9 | ➜ | 1/2/414:419 | NA |
10 | ➜ | 1/2/450:456 | NA |
11 | ➜ | 1/2/520:532 | NA |
12 | ➜ | 1/2/937:942 | NA |
13 | ➜ | 1/2/1055:1064 | NA |
14 | ➜ | 1/2/1084:1089 | NA |
15 | ➜ | 1/2/1594:1602 | NA |
16 | ➜ | 1/BQ/38:45 | NA |
17 | ➜ | 1/BQ/69:74 | NA |
18 | ➜ | 1/BQ/90:96 | NA |
19 | ➜ | 1/BQ/132:136 | NA |
20 | ➜ | 1/BQ/194:201 | NA |
21 | ➜ | 1/BQ/208:212 | NA |
22 | ➜ | 1/BQ/216:224 | NA |
23 | ➜ | 1/BQ/278:287 | NA |
24 | ➜ | 1/BQ/303:312 | NA |
25 | ➜ | 1/BQ/357:362 | NA |
26 | ➜ | 1/BQ/382:387 | NA |
27 | ➜ | 1/BQ/543:548 | NA |
28 | ➜ | 1/BQ/599:604 | NA |
29 | ➜ | 1/BQ/640:649 | NA |
30 | ➜ | 1/BQ/686:694 | NA |
31 | ➜ | 1/BQ/707:712 | NA |
32 | ➜ | 1/BQ/732:737 | NA |
33 | ➜ | 1/BQ/763:768 | NA |
34 | ➜ | 1/BQ/844:849 | NA |
35 | ➜ | 1/BQ/876:885 | NA |
36 | ➜ | 1/BQ/910:918 | NA |
37 | ➜ | 1/BQ/958:963 | NA |
38 | ➜ | 1/BQ/1023:1029 | NA |
39 | ➜ | 1/BQ/1076:1083 | NA |
40 | ➜ | 1/BQ/1126:1132 | NA |
41 | ➜ | 1/BQ/1148:1155 | NA |
42 | ➜ | 1/BQ/1233:1255 | NA |
43 | ➜ | 1/BQ/1262:1277 | NA |
44 | ➜ | 1/BQ/1403:1408 | NA |
45 | ➜ | 1/BQ/1462:1470 | NA |
46 | ➜ | 1/BQ/1506:1512 | NA |
47 | ➜ | 1/BQ/1544:1549 | NA |
48 | ➜ | 1/BQ/1599:1608 | NA |
49 | ➜ | 1/BQ/1634:1639 | NA |
50 | ➜ | 1/BQ/1679:1689 | NA |
51 | ➜ | 1/BQ/1719:1725 | NA |
52 | ➜ | 1/BQ/1760:1765 | NA |
53 | ➜ | 1/BQ/1792:1796 | NA |
54 | ➜ | 1/BQ/1844:1851 | NA |
55 | ➜ | 1/BQ/1862:1868 | NA |
56 | ➜ | 1/BQ/1923:1928 | NA |
57 | ➜ | 1/BQ/2110:2114 | NA |
58 | ➜ | 1/BQ/2135:2145 | NA |
59 | ➜ | 1/BQ/2164:2170 | NA |
60 | ➜ | 1/BQ/2220:2225 | NA |
61 | ➜ | 1/BQ/2253:2263 | NA |
62 | ➜ | 1/BQ/2292:2300 | NA |
63 | ➜ | 1/BQ/2369:2378 | NA |
64 | ➜ | 1/BQ/2535:2544 | NA |
65 | ➜ | 1/BQ/2568:2573 | NA |
66 | ➜ | 1/BQ/2616:2624 | NA |
67 | ➜ | 1/BQ/2633:2645 | NA |
68 | ➜ | 1/BQ/2673:2681 | NA |
69 | ➜ | 1/BQ/2693:2700 | NA |
70 | ➜ | 1/BQ/2724:2732 | NA |
71 | ➜ | 1/BQ/2744:2749 | NA |
72 | ➜ | 1/BQ/2776:2784 | NA |
73 | ➜ | 1/BQ/2840:2848 | NA |
74 | ➜ | 1/BQ/2897:2904 | NA |
75 | ➜ | 1/BQ/2920:2926 | NA |
76 | ➜ | 1/BQ/2963:2968 | NA |
77 | ➜ | 1/BQ/3025:3030 | NA |
78 | ➜ | 1/BQ/3068:3073 | NA |
79 | ➜ | 1/BQ/3110:3124 | NA |
80 | ➜ | 1/BQ/3194:3197 | NA |
81 | ➜ | 1/BQ/3240:3247 | NA |
82 | ➜ | 1/BQ/3303:3311 | NA |
83 | ➜ | 1/BQ/3350:3353 | NA |
84 | ➜ | 1/BR/36:41 | NA |
85 | ➜ | 1/BR/88:93 | NA |
86 | ➜ | 1/BS/69:89 | NA |
87 | ➜ | 1/BS/108:114 | NA |
88 | ➜ | 1/BS/124:129 | NA |
89 | ➜ | 1/m/13:22 | NA |
90 | ➜ | 1/m/31:39 | NA |
91 | ➜ | 1/m/53:61 | NA |
92 | ➜ | 1/n/13:22 | NA |
93 | ➜ | 1/n/31:39 | NA |
94 | ➜ | 1/n/53:61 | NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
1 | ➜ | 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17 | |
2 | ➜ | 230, 231, 232, 233, 234, 235 | |
3 | ➜ | 491, 492, 493, 494, 495, 496 | |
4 | ➜ | 569, 570, 571, 572, 573, 574 | |
5 | ➜ | 650, 651, 652, 653, 654, 655, 656, 657, 658, 676, 677, 678, 679, 680, 681, 682, 683, 684 | |
6 | ➜ | 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727, 728, 729, 730, 731, 732, 733, 734, 735, 736 | |
7 | ➜ | 764, 765, 766, 767, 768, 769, 770, 771, 772 | |
8 | ➜ | 777, 778, 779, 780, 781, 782, 783 | |
9 | ➜ | 829, 830, 831, 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843 | |
10 | ➜ | 900, 901, 902, 903, 904, 905, 906, 907, 908, 909 | |
11 | ➜ | 997, 998, 999, 1000, 1001, 1002, 1003, 1004, 1005, 1006, 1007 | |
12 | ➜ | 1121, 1122, 1123, 1124, 1125, 1126 | |
13 | ➜ | 1188, 1189, 1190, 1191, 1192, 1193, 1194, 1195, 1196, 1197 | |
14 | ➜ | 1238, 1239, 1240, 1241, 1242, 1243, 1244, 1245, 1246, 1247 | |
15 | ➜ | 1296, 1297, 1298, 1299, 1300, 1301 | |
16 | ➜ | 1309, 1310, 1311, 1312, 1313, 1314, 1315, 1316 | |
17 | ➜ | 1357, 1358, 1359, 1360, 1361, 1362, 1363, 1364, 1365, 1366 | |
18 | ➜ | 1396, 1397, 1398, 1399, 1400, 1401, 1402 | |
19 | ➜ | 1501, 1502, 1503, 1504, 1505, 1506 | |
20 | ➜ | 1550, 1551, 1552, 1553, 1554, 1555, 1556, 1557, 1558, 1559, 1560, 1561 | |
21 | ➜ | 1687, 1688, 1689, 1690, 1691, 1692, 1693, 1708, 1709, 1710, 1711, 1712, 1713, 1714 | |
22 | ➜ | 1778, 1779, 1780, 1781, 1782, 1783 | |
23 | ➜ | 1347, 1348, 1349, 1350, 1351, 1352, 1353, 1354, 1355, 1356, 1357 | |
24 | ➜ | 1565, 1566, 1567, 1568, 1569, 1570, 1571, 1572, 1573, 1574 | |
25 | ➜ | 1952, 1953, 1954, 1955, 2093, 2094 | |
26 | ➜ | 2450, 2451, 2452, 2492, 2493, 2494, 2495, 2496 |
Valid loops
# | loop id | location | motif |
---|---|---|---|
1 | ➜ | 1/2/41:42,1/2/433:439,1/2/464:466 | NA |
2 | ➜ | 1/2/633:635,1/2/861:865,1/2/965:966 | NA |
3 | ➜ | 1/2/881:884,1/2/928:936,1/2/943:947 | NA |
4 | ➜ | 1/2/1037:1039,1/2/1079:1083,1/2/1090:1094 | NA |
5 | ➜ | 1/2/1161:1164,1/2/1581:1587,1/2/1609:1616 | NA |
6 | ➜ | 1/2/1168:1173,1/2/1466:1470,1/2/1574:1577 | NA |
7 | ➜ | 1/2/1470:1474,1/2/1533:1545,1/2/1566:1574 | NA |
8 | ➜ | 1/BQ/113:123,1/BQ/149:158,1/BQ/263:267 | NA |
9 | ➜ | 1/BQ/369:376,1/BQ/403:404,1/BS/19:20 | NA |
10 | ➜ | 1/BQ/502:503,1/BQ/588:597,1/BQ/606:611 | NA |
11 | ➜ | 1/BQ/814:820,1/BQ/905:907,1/BQ/923:926 | NA |
12 | ➜ | 1/BQ/828:831,1/BQ/863:867,1/BQ/892:897 | NA |
13 | ➜ | 1/BQ/986:987,1/BQ/1062:1066,1/BQ/1092:1098 | NA |
14 | ➜ | 1/BQ/1230:1232,1/BQ/1256:1262,1/BQ/1277:1279 | NA |
15 | ➜ | 1/BQ/1479:1485,1/BQ/1857:1859,1/BQ/1871:1874 | NA |
16 | ➜ | 1/BQ/1488:1491,1/BQ/1837:1843,1/BQ/1852:1854 | NA |
17 | ➜ | 1/BQ/1526:1531,1/BQ/1591:1595,1/BQ/1612:1613 | NA |
18 | ➜ | 1/BQ/1631:1632,1/BQ/1641:1645,1/BQ/1810:1811 | NA |
19 | ➜ | 1/BQ/2432:2435,1/BQ/2512:2517,1/BQ/2590:2597 | NA |
20 | ➜ | 1/BQ/2529:2532,1/BQ/2547:2563,1/BQ/2578:2581 | NA |
21 | ➜ | 1/BQ/2664:2666,1/BQ/2690:2692,1/BQ/2701:2706 | NA |
22 | ➜ | 1/BQ/2886:2889,1/BQ/2914:2916,1/BQ/2930:2936 | NA |
23 | ➜ | 1/BQ/3298:3300,1/BQ/3314:3318,1/BQ/3388:3390 | NA |
24 | ➜ | 1/BR/9:14,1/BR/66:67,1/BR/111:112 | NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
1 | ➜ | 1180, 1181, 1182, 1183, 1184, 1185, 1186, 1187, 1198, 1199, 1200, 1201, 1202, 1203, 1204, 1205, 1206, 1207, 1208, 1209, 1454, 1455, 1456, 1457, 1458 | |
2 | ➜ | 1215, 1216, 1217, 1218, 1219, 1220, 1263, 1264, 1265, 1266, 1267, 1442, 1443, 1444, 1445, 1446, 1447, 1448 | |
3 | ➜ | 1283, 1284, 1285, 1286, 1287, 1288, 1327, 1328, 1329, 1330, 1331, 1332, 1419, 1420, 1421, 1422, 1423, 1424 | |
4 | ➜ | 1293, 1294, 1303, 1304, 1305, 1306, 1318, 1319, 1320, 1321, 1322 | |
5 | ➜ | 1336, 1337, 1338, 1386, 1387, 1388, 1389, 1412, 1413, 1414, 1415 |
Coloring options: