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Structure Title
5MDZ Summary
Authors
Release Date
2016-12-14
Experimental technique
ELECTRON MICROSCOPY
Resolution
3.1 Å
Chains
  • 5 RNA chains from Escherichia coli
  • 51 other chains
Compounds
23S ribosomal RNA, 16S ribosomal RNA, 5S ribosomal RNA, mRNA, fMet-NH-tRNA(fMet), 50S ribosomal protein L2, 50S ribosomal protein L3, 50S ribosomal protein L4, 50S ribosomal protein L5, 50S ribosomal protein L6, 50S ribosomal protein L9, 50S ribosomal protein L10, 50S ribosomal protein L11, 50S ribosomal protein L13, 50S ribosomal protein L14, 50S ribosomal protein L15, 50S ribosomal protein L16, 50S ribosomal protein L17, 50S ribosomal protein L18, 50S ribosomal protein L19, 50S ribosomal protein L20, 50S ribosomal protein L21, 50S ribosomal protein L22, 50S ribosomal protein L23, 50S ribosomal protein L24, 50S ribosomal protein L25, 50S ribosomal protein L27, 50S ribosomal protein L28, 50S ribosomal protein L29, 50S ribosomal protein L30, 50S ribosomal protein L31, 50S ribosomal protein L32, 50S ribosomal protein L33, 50S ribosomal protein L34, 50S ribosomal protein L35, 50S ribosomal protein L36, 30S ribosomal protein S2, 30S ribosomal protein S3, 30S ribosomal protein S4, 30S ribosomal protein S5, 30S ribosomal protein S6, 30S ribosomal protein S7, 30S ribosomal protein S8, 30S ribosomal protein S9, 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, 30S ribosomal protein S13, 30S ribosomal protein S14, 30S ribosomal protein S15, 30S ribosomal protein S16, 30S ribosomal protein S17, 30S ribosomal protein S18, 30S ribosomal protein S19, 30S ribosomal protein S20, 30S ribosomal protein S21

Pairwise Interactions

Interactions annotated by FR3D: View all

RNA 3D Motifs

In the current release of the RNA 3D Motif Atlas, 5MDZ contains:
  • 186 internal loops from 0 motif groups
  • 105 hairpin loops from 0 motif groups
  • 26 three-way junctions
More

3D Redundancy

5MDZ belongs to the following equivalence classes in the current representative set:

Similar structures

5J7L 6WD7 6ZTL 6GWT 6OUO 5KPW 6GXM 5GAG 5GAH 6OGF 5UYK 5UYP 5UYQ 6WDA 6VYR 6ENJ 6Q9A 5L3P 5GAD 6GC8 6GBZ 5KPS 3JCD 4UY8 5KCS 6VZJ 6OT3 6Q97 6ZTN 6OGG 5KPX 6O9J 5UYN 6WDI 6WDB 6GC0 3J9Y 6GXO 6GXN 6O9K 6WDC 5WF0 6WD2 6WDK 6WD5 6WDM 6WD3 5IQR 6OSQ 3JBU 5UYL 6VWM 6X7F 6BU8 5WFK 5O2R 5LZE 6ZTJ 5U4I 6VWN 5LZA 5KCR 6VYQ 6VU3 6YSU 6ORL 6OSK 3J9Z 6DNC 3JCJ 6VYS 6XDQ 5JU8 5JTE 6WDJ 6WD4 6WD8 6WD6 6WD9 6WDL 6I0Y 4V71 6VYZ 6VYY 6VZ2 4V6R 4V6Q 4V7I 4V48 4V75 6VYX 4V6V 6VZ3 6VZ5 4V7A 4V65 4V66 4V6T 2J28 2RDO 4V6Z 4V6Y 4V79 4V4W 4V4V 4V76 4V70 4V74 4V77 4V78 4V73 4V6O 3BBX 4V6N 4V47 4V72 4V6S 4V6L 4V6P 6VYT 4V6K 6XIJ 5LZF 6XDR 6X9Q 5LZC 5NCO 6XGF 6GC6 6C4H 6GC4 6OST 5NP6 6WDH 5KPV 5GAF 6GXP 6Q98 3JA1 3JCN 6GC7 5LZB 4V6M 4V7B 5ADY 3J5L 4V7C 4V7D 6H58 6H58 6XII 6VYW 4CSU 4V5H 5U4J 3J8G 4V69 5AKA 6VZ7 6VYU 3J7Z 5WE6 4V7T 4V53 4V9C 4V56 4U20 4V56 6I7V 6BY1 4U27 5J88 4U1V 4V64 4V50 4V54 4V64 6BY1 4V53 4V50 4YBB 4V55 4V4Q 4WF1 4U24 4U26 4U20 4V6C 4V5Y 5J91 4WWW 4V6E 5IT8 4V55 4V4Q 4V6D 4U25 4U1U 4V9C 4U1V 4V89 4V54 4V85 4V9P 4V9P 6LKQ 4V9D 4V9O 4V9O 4WWW 4V9O 4V9P 5J88 5JC9 4YBB 5IT8 4WOI 4WOI 6I7V 5J91 4V9P 4V6C 5J7L 4V9D 4U26 4V7S 4V57 4V52 4V57 4V9O 4U1U 4U25 4U24 4V7T 4U27 4WF1 5J8A 5JC9 4V7U 4V7V 4V52 5J8A 6ZTM 5U9F 6WDD 5UYM 6ENU 6X6T 6YST 6QUL 6VWL 5U9G 6S0K 6ZTP 6PCH 6X7K 6YSR 5MDW 6SZS 5MGP 5WFS 6WDG 7BV8 6ENF 6WNV 6OGI 5GAE 3JCE 5MDY 5LZD 5WDT 4V80 6WDF 6WD1 6OG7 5WE4 6OFX 3JBV 4V80 6C4I 6ZU1 6WNW 5J5B 6HRM 6XZ7 6PJ6 6YSS 6PCR 6PC6 6PC7 4V4H 4V4H 4V6D 4V7V 4V7S 4V7U 4V6E 4V5B 4V5B 5J5B 6TBV 6TC3 5NWY 6WD0 6WDE 5H5U 6ORE 6PC8 5MDV 6H4N 6WNT 6PCS 6PCQ 6QDW 6PC5 5AFI 6WYV 6PCT 6U48 6Y69 4V5Y
Structures from NR_all_83717.67