5TCU | Motifs

100 Hairpin loops
163 Internal loops
22 Junction loops

Valid loops

#	loop id	location	annotation	motif
1	HL_5TCU_001 ➜	1/A/13:23	NA	NA
2	HL_5TCU_002 ➜	1/A/158:163	NA	NA
3	HL_5TCU_003 ➜	1/A/267:275	NA	NA
4	HL_5TCU_004 ➜	1/A/303:310	NA	NA
5	HL_5TCU_005 ➜	1/A/327:342	NA	NA
6	HL_5TCU_006 ➜	1/A/350:355	NA	NA
7	HL_5TCU_007 ➜	1/A/387:392	NA	NA
8	HL_5TCU_008 ➜	1/A/427:432	NA	NA
9	HL_5TCU_009 ➜	1/A/530:535	NA	NA
10	HL_5TCU_010 ➜	1/A/625:631	NA	NA
11	HL_5TCU_011 ➜	1/A/697:706	NA	NA
12	HL_5TCU_012 ➜	1/A/734:739	NA	NA
13	HL_5TCU_013 ➜	1/A/794:804	NA	NA
14	HL_5TCU_015 ➜	1/A/872:877	NA	NA
15	HL_5TCU_016 ➜	1/A/906:913	NA	NA
16	HL_5TCU_017 ➜	1/A/973:982	NA	NA
17	HL_5TCU_018 ➜	1/A/1022:1027	NA	NA
18	HL_5TCU_019 ➜	1/A/1039:1044	NA	NA
19	HL_5TCU_020 ➜	1/A/1088:1093	NA	NA
20	HL_5TCU_021 ➜	1/A/1101:1108	NA	NA
21	HL_5TCU_022 ➜	1/A/1141:1154	NA	NA
22	HL_5TCU_023 ➜	1/A/1175:1183	NA	NA
23	HL_5TCU_024 ➜	1/A/1276:1281	NA	NA
24	HL_5TCU_025 ➜	1/A/1324:1335	NA	NA
25	HL_5TCU_026 ➜	1/A/1367:1377	NA	NA
26	HL_5TCU_027 ➜	1/A/1460:1466	NA	NA
27	HL_5TCU_028 ➜	1/A/1527:1532	NA	NA
28	HL_5TCU_029 ➜	1/B/67:74	NA	NA
29	HL_5TCU_030 ➜	1/B/86:96	NA	NA
30	HL_5TCU_031 ➜	1/B/122:127	NA	NA
31	HL_5TCU_032 ➜	1/B/136:143	NA	NA
32	HL_5TCU_033 ➜	1/B/159:169	NA	NA
33	HL_5TCU_034 ➜	1/B/190:212	NA	NA
34	HL_5TCU_035 ➜	1/B/228:233	NA	NA
35	HL_5TCU_036 ➜	1/B/249:255	NA	NA
36	HL_5TCU_037 ➜	1/B/283:288	NA	NA
37	HL_5TCU_038 ➜	1/B/348:355	NA	NA
38	HL_5TCU_039 ➜	1/B/362:366	NA	NA
39	HL_5TCU_040 ➜	1/B/370:378	NA	NA
40	HL_5TCU_041 ➜	1/B/424:442	NA	NA
41	HL_5TCU_042 ➜	1/B/456:463	NA	NA
42	HL_5TCU_043 ➜	1/B/508:513	NA	NA
43	HL_5TCU_044 ➜	1/B/533:538	NA	NA
44	HL_5TCU_045 ➜	1/B/587:594	NA	NA
45	HL_5TCU_046 ➜	1/B/609:618	NA	NA
46	HL_5TCU_047 ➜	1/B/654:662	NA	NA
47	HL_5TCU_048 ➜	1/B/685:693	NA	NA
48	HL_5TCU_049 ➜	1/B/757:764	NA	NA
49	HL_5TCU_050 ➜	1/B/789:798	NA	NA
50	HL_5TCU_051 ➜	1/B/824:830	NA	NA
51	HL_5TCU_052 ➜	1/B/870:877	NA	NA
52	HL_5TCU_053 ➜	1/B/997:1008	NA	NA
53	HL_5TCU_054 ➜	1/B/1022:1029	NA	NA
54	HL_5TCU_056 ➜	1/B/1211:1221	NA	NA
55	HL_5TCU_057 ➜	1/B/1260:1265	NA	NA
56	HL_5TCU_058 ➜	1/B/1318:1326	NA	NA
57	HL_5TCU_059 ➜	1/B/1361:1367	NA	NA
58	HL_5TCU_060 ➜	1/B/1400:1405	NA	NA
59	HL_5TCU_061 ➜	1/B/1426:1435	NA	NA
60	HL_5TCU_063 ➜	1/B/1612:1615	NA	NA
61	HL_5TCU_064 ➜	1/B/1656:1663	NA	NA
62	HL_5TCU_065 ➜	1/B/1672:1682	NA	NA
63	HL_5TCU_066 ➜	1/B/1735:1740	NA	NA
64	HL_5TCU_067 ➜	1/B/1761:1769	NA	NA
65	HL_5TCU_068 ➜	1/B/1779:1783	NA	NA
66	HL_5TCU_069 ➜	1/B/1804:1814	NA	NA
67	HL_5TCU_070 ➜	1/B/1833:1838	NA	NA
68	HL_5TCU_071 ➜	1/B/1895:1900	NA	NA
69	HL_5TCU_072 ➜	1/B/1937:1947	NA	NA
70	HL_5TCU_073 ➜	1/B/1976:1984	NA	NA
71	HL_5TCU_074 ➜	1/B/2053:2064	NA	NA
72	HL_5TCU_076 ➜	1/B/2236:2242	NA	NA
73	HL_5TCU_077 ➜	1/B/2275:2283	NA	NA
74	HL_5TCU_078 ➜	1/B/2291:2303	NA	NA
75	HL_5TCU_080 ➜	1/B/2351:2358	NA	NA
76	HL_5TCU_081 ➜	1/B/2382:2389	NA	NA
77	HL_5TCU_082 ➜	1/B/2401:2406	NA	NA
78	HL_5TCU_083 ➜	1/B/2431:2440	NA	NA
79	HL_5TCU_084 ➜	1/B/2498:2506	NA	NA
80	HL_5TCU_085 ➜	1/B/2555:2562	NA	NA
81	HL_5TCU_086 ➜	1/B/2578:2584	NA	NA
82	HL_5TCU_087 ➜	1/B/2621:2626	NA	NA
83	HL_5TCU_088 ➜	1/B/2685:2690	NA	NA
84	HL_5TCU_089 ➜	1/B/2728:2733	NA	NA
85	HL_5TCU_090 ➜	1/B/2770:2788	NA	NA
86	HL_5TCU_091 ➜	1/B/2817:2826	NA	NA
87	HL_5TCU_092 ➜	1/B/2839:2847	NA	NA
88	HL_5TCU_093 ➜	1/B/2876:2881	NA	NA
89	HL_5TCU_094 ➜	1/C/36:42	NA	NA
90	HL_5TCU_095 ➜	1/D/13:22	NA	NA
91	HL_5TCU_096 ➜	1/D/31:39	NA	NA
92	HL_5TCU_097 ➜	1/D/53:61	NA	NA
93	HL_5TCU_098 ➜	1/E/13:22	NA	NA
94	HL_5TCU_099 ➜	1/E/31:39	NA	NA
95	HL_5TCU_100 ➜	1/E/53:61	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_5TCU_014 ➜	missing nts	NA
2	HL_5TCU_055 ➜	missing nts	NA
3	HL_5TCU_062 ➜	missing nts	NA
4	HL_5TCU_075 ➜	missing nts	NA
5	HL_5TCU_079 ➜	incomplete nts	NA

Valid loops

#	loop id	location	annotation	motif
1	IL_5TCU_001 ➜	1/A/31:34,1/A/560:561	NA	NA
2	IL_5TCU_002 ➜	1/A/34:35,1/A/558:560	NA	NA
3	IL_5TCU_003 ➜	1/A/48:53,1/A/367:369	NA	NA
4	IL_5TCU_004 ➜	1/A/64:68,1/A/101:103	NA	NA
5	IL_5TCU_005 ➜	1/A/68:72,1/A/97:101	NA	NA
6	IL_5TCU_006 ➜	1/A/128:131,1/A/239:240	NA	NA
7	IL_5TCU_007 ➜	1/A/132:136,1/A/235:238	NA	NA
8	IL_5TCU_008 ➜	1/A/142:144,1/A/178:229	NA	NA
9	IL_5TCU_009 ➜	1/A/154:156,1/A/165:167	NA	NA
10	IL_5TCU_010 ➜	1/A/250:255,1/A/285:292	NA	NA
11	IL_5TCU_011 ➜	1/A/257:261,1/A/281:283	NA	NA
12	IL_5TCU_012 ➜	1/A/299:301,1/A/312:317	NA	NA
13	IL_5TCU_013 ➜	1/A/375:377,1/A/400:401	NA	NA
14	IL_5TCU_014 ➜	1/A/378:383,1/A/397:399	NA	NA
15	IL_5TCU_015 ➜	1/A/383:387,1/A/392:397	NA	NA
16	IL_5TCU_016 ➜	1/A/417:424,1/A/435:441	NA	NA
17	IL_5TCU_017 ➜	1/A/512:519,1/A/548:549	NA	NA
18	IL_5TCU_018 ➜	1/A/523:529,1/A/536:544	NA	NA
19	IL_5TCU_019 ➜	1/A/586:593,1/A/764:771	NA	NA
20	IL_5TCU_020 ➜	1/A/600:604,1/A/652:655	NA	NA
21	IL_5TCU_021 ➜	1/A/605:606,1/A/648:651	NA	NA
22	IL_5TCU_022 ➜	1/A/611:614,1/A/642:643	NA	NA
23	IL_5TCU_023 ➜	1/A/614:621,1/A/636:642	NA	NA
24	IL_5TCU_024 ➜	1/A/621:622,1/A/634:636	NA	NA
25	IL_5TCU_025 ➜	1/A/662:663,1/A/759:762	NA	NA
26	IL_5TCU_026 ➜	1/A/665:666,1/A/755:757	NA	NA
27	IL_5TCU_027 ➜	1/A/669:674,1/A/748:752	NA	NA
28	IL_5TCU_028 ➜	1/A/681:686,1/A/720:725	NA	NA
29	IL_5TCU_029 ➜	1/A/689:696,1/A/707:717	NA	NA
30	IL_5TCU_030 ➜	1/A/782:787,1/A/811:813	NA	NA
31	IL_5TCU_031 ➜	1/A/787:791,1/A/807:811	NA	NA
32	IL_5TCU_032 ➜	1/A/897:905,1/A/914:920	NA	NA
33	IL_5TCU_033 ➜	1/A/931:935,1/A/1402:1407	NA	NA
34	IL_5TCU_034 ➜	1/A/935:937,1/A/1401:1402	NA	NA
35	IL_5TCU_035 ➜	1/A/943:945,1/A/1391:1395	NA	NA
36	IL_5TCU_036 ➜	1/A/963:964,1/A/1237:1239	NA	NA
37	IL_5TCU_037 ➜	1/A/1003:1008,1/A/1055:1057	NA	NA
38	IL_5TCU_038 ➜	1/A/1008:1011,1/A/1051:1055	NA	NA
39	IL_5TCU_039 ➜	1/A/1060:1062,1/A/1219:1220	NA	NA
40	IL_5TCU_040 ➜	1/A/1063:1068,1/A/1215:1218	NA	NA
41	IL_5TCU_041 ➜	1/A/1069:1070,1/A/1210:1214	NA	NA
42	IL_5TCU_042 ➜	1/A/1072:1073,1/A/1206:1208	NA	NA
43	IL_5TCU_043 ➜	1/A/1073:1075,1/A/1204:1206	NA	NA
44	IL_5TCU_044 ➜	1/A/1130:1134,1/A/1163:1166	NA	NA
45	IL_5TCU_045 ➜	1/A/1134:1141,1/A/1154:1163	NA	NA
46	IL_5TCU_046 ➜	1/A/1255:1257,1/A/1303:1304	NA	NA
47	IL_5TCU_047 ➜	1/A/1266:1269,1/A/1288:1293	NA	NA
48	IL_5TCU_048 ➜	1/A/1270:1276,1/A/1281:1287	NA	NA
49	IL_5TCU_049 ➜	1/A/1314:1320,1/A/1339:1345	NA	NA
50	IL_5TCU_050 ➜	1/A/1410:1412,1/A/1513:1516	NA	NA
51	IL_5TCU_051 ➜	1/A/1412:1415,1/A/1509:1513	NA	NA
52	IL_5TCU_052 ➜	1/A/1416:1418,1/A/1506:1508	NA	NA
53	IL_5TCU_053 ➜	1/A/1418:1420,1/A/1503:1506	NA	NA
54	IL_5TCU_054 ➜	1/A/1423:1425,1/A/1498:1500	NA	NA
55	IL_5TCU_055 ➜	1/A/1427:1430,1/A/1493:1496	NA	NA
56	IL_5TCU_056 ➜	1/A/1435:1438,1/A/1485:1488	NA	NA
57	IL_5TCU_057 ➜	1/A/1440:1442,1/A/1482:1483	NA	NA
58	IL_5TCU_058 ➜	1/A/1442:1446,1/A/1478:1482	NA	NA
59	IL_5TCU_059 ➜	1/A/1446:1448,1/A/1476:1478	NA	NA
60	IL_5TCU_060 ➜	1/A/1450:1454,1/A/1471:1474	NA	NA
61	IL_5TCU_061 ➜	1/A/1455:1460,1/A/1466:1470	NA	NA
62	IL_5TCU_062 ➜	1/B/22:24,1/B/562:563	NA	NA
63	IL_5TCU_063 ➜	1/B/24:30,1/B/555:562	NA	NA
64	IL_5TCU_064 ➜	1/B/35:37,1/B/488:491	NA	NA
65	IL_5TCU_065 ➜	1/B/42:44,1/B/480:483	NA	NA
66	IL_5TCU_066 ➜	1/B/80:85,1/B/97:105	NA	NA
67	IL_5TCU_067 ➜	1/B/152:153,1/B/175:177	NA	NA
68	IL_5TCU_068 ➜	1/B/157:159,1/B/169:171	NA	NA
69	IL_5TCU_069 ➜	1/B/186:187,1/B/215:217	NA	NA
70	IL_5TCU_070 ➜	1/B/241:248,1/B/256:262	NA	NA
71	IL_5TCU_071 ➜	1/B/305:306,1/B/409:412	NA	NA
72	IL_5TCU_073 ➜	1/B/336:338,1/B/386:390	NA	NA
73	IL_5TCU_074 ➜	1/B/527:530,1/B/541:554	NA	NA
74	IL_5TCU_075 ➜	1/B/581:584,1/B/597:600	NA	NA
75	IL_5TCU_076 ➜	1/B/584:586,1/B/596:597	NA	NA
76	IL_5TCU_077 ➜	1/B/586:587,1/B/594:596	NA	NA
77	IL_5TCU_078 ➜	1/B/607:609,1/B/618:620	NA	NA
78	IL_5TCU_079 ➜	1/B/638:641,1/B/704:707	NA	NA
79	IL_5TCU_080 ➜	1/B/649:653,1/B/663:667	NA	NA
80	IL_5TCU_081 ➜	1/B/717:719,1/B/851:853	NA	NA
81	IL_5TCU_082 ➜	1/B/719:723,1/B/844:851	NA	NA
82	IL_5TCU_083 ➜	1/B/741:743,1/B/808:811	NA	NA
83	IL_5TCU_084 ➜	1/B/746:748,1/B/773:776	NA	NA
84	IL_5TCU_085 ➜	1/B/748:752,1/B/769:773	NA	NA
85	IL_5TCU_086 ➜	1/B/783:785,1/B/802:803	NA	NA
86	IL_5TCU_087 ➜	1/B/785:787,1/B/801:802	NA	NA
87	IL_5TCU_088 ➜	1/B/787:788,1/B/799:801	NA	NA
88	IL_5TCU_089 ➜	1/B/882:883,1/B/984:986	NA	NA
89	IL_5TCU_090 ➜	1/B/889:896,1/B/972:978	NA	NA
90	IL_5TCU_091 ➜	1/B/897:898,1/B/969:971	NA	NA
91	IL_5TCU_092 ➜	1/B/907:908,1/B/958:960	NA	NA
92	IL_5TCU_093 ➜	1/B/909:913,1/B/954:957	NA	NA
93	IL_5TCU_094 ➜	1/B/919:924,1/B/943:948	NA	NA
94	IL_5TCU_095 ➜	1/B/1036:1038,1/B/1204:1207	NA	NA
95	IL_5TCU_096 ➜	1/B/1038:1040,1/B/1203:1204	NA	NA
96	IL_5TCU_097 ➜	1/B/1042:1046,1/B/1197:1201	NA	NA
97	IL_5TCU_098 ➜	1/B/1048:1055,1/B/1194:1195	NA	NA
98	IL_5TCU_099 ➜	1/B/1055:1057,1/B/1193:1194	NA	NA
99	IL_5TCU_100 ➜	1/B/1062:1068,1/B/1184:1188	NA	NA
100	IL_5TCU_101 ➜	1/B/1068:1074,1/B/1168:1184	NA	NA
101	IL_5TCU_102 ➜	1/B/1075:1078,1/B/1165:1167	NA	NA
102	IL_5TCU_103 ➜	1/B/1080:1083,1/B/1160:1163	NA	NA
103	IL_5TCU_104 ➜	1/B/1087:1097,1/B/1150:1156	NA	NA
104	IL_5TCU_105 ➜	1/B/1243:1245,1/B/1277:1279	NA	NA
105	IL_5TCU_106 ➜	1/B/1246:1253,1/B/1272:1276	NA	NA
106	IL_5TCU_107 ➜	1/B/1257:1259,1/B/1266:1268	NA	NA
107	IL_5TCU_108 ➜	1/B/1300:1307,1/B/2038:2044	NA	NA
108	IL_5TCU_109 ➜	1/B/1356:1360,1/B/1368:1370	NA	NA
109	IL_5TCU_110 ➜	1/B/1388:1390,1/B/1416:1417	NA	NA
110	IL_5TCU_111 ➜	1/B/1447:1452,1/B/1631:1636	NA	NA
111	IL_5TCU_113 ➜	1/B/1461:1465,1/B/1624:1627	NA	NA
112	IL_5TCU_114 ➜	1/B/1466:1468,1/B/1622:1623	NA	NA
113	IL_5TCU_115 ➜	1/B/1518:1523,1/B/1557:1562	NA	NA
114	IL_5TCU_116 ➜	1/B/1695:1700,1/B/2031:2033	NA	NA
115	IL_5TCU_117 ➜	1/B/1707:1710,1/B/2021:2024	NA	NA
116	IL_5TCU_118 ➜	1/B/1710:1718,1/B/2017:2021	NA	NA
117	IL_5TCU_119 ➜	1/B/1730:1735,1/B/1740:1746	NA	NA
118	IL_5TCU_120 ➜	1/B/1755:1760,1/B/1770:1774	NA	NA
119	IL_5TCU_121 ➜	1/B/1796:1798,1/B/2007:2010	NA	NA
120	IL_5TCU_122 ➜	1/B/1825:1831,1/B/1840:1848	NA	NA
121	IL_5TCU_123 ➜	1/B/1864:1867,1/B/1929:1930	NA	NA
122	IL_5TCU_124 ➜	1/B/1867:1871,1/B/1923:1929	NA	NA
123	IL_5TCU_125 ➜	1/B/1873:1876,1/B/1920:1921	NA	NA
124	IL_5TCU_126 ➜	1/B/1878:1882,1/B/1914:1918	NA	NA
125	IL_5TCU_127 ➜	1/B/1883:1887,1/B/1909:1913	NA	NA
126	IL_5TCU_128 ➜	1/B/1891:1894,1/B/1901:1905	NA	NA
127	IL_5TCU_129 ➜	1/B/1960:1961,1/B/1991:1994	NA	NA
128	IL_5TCU_130 ➜	1/B/1961:1972,1/B/1988:1991	NA	NA
129	IL_5TCU_131 ➜	1/B/2075:2079,1/B/2644:2647	NA	NA
130	IL_5TCU_132 ➜	1/B/2081:2083,1/B/2639:2642	NA	NA
131	IL_5TCU_133 ➜	1/B/2094:2100,1/B/2463:2470	NA	NA
132	IL_5TCU_134 ➜	1/B/2108:2110,1/B/2263:2266	NA	NA
133	IL_5TCU_135 ➜	1/B/2110:2113,1/B/2260:2263	NA	NA
134	IL_5TCU_136 ➜	1/B/2123:2125,1/B/2218:2220	NA	NA
135	IL_5TCU_137 ➜	1/B/2129:2131,1/B/2212:2214	NA	NA
136	IL_5TCU_138 ➜	1/B/2229:2231,1/B/2247:2248	NA	NA
137	IL_5TCU_139 ➜	1/B/2324:2326,1/B/2344:2348	NA	NA
138	IL_5TCU_140 ➜	1/B/2377:2380,1/B/2391:2394	NA	NA
139	IL_5TCU_141 ➜	1/B/2428:2430,1/B/2441:2442	NA	NA
140	IL_5TCU_142 ➜	1/B/2480:2481,1/B/2525:2527	NA	NA
141	IL_5TCU_143 ➜	1/B/2481:2482,1/B/2523:2525	NA	NA
142	IL_5TCU_144 ➜	1/B/2483:2486,1/B/2520:2522	NA	NA
143	IL_5TCU_145 ➜	1/B/2486:2488,1/B/2516:2520	NA	NA
144	IL_5TCU_146 ➜	1/B/2493:2497,1/B/2507:2511	NA	NA
145	IL_5TCU_147 ➜	1/B/2534:2536,1/B/2606:2609	NA	NA
146	IL_5TCU_148 ➜	1/B/2537:2540,1/B/2598:2605	NA	NA
147	IL_5TCU_149 ➜	1/B/2549:2550,1/B/2567:2570	NA	NA
148	IL_5TCU_150 ➜	1/B/2618:2619,1/B/2628:2630	NA	NA
149	IL_5TCU_151 ➜	1/B/2663:2667,1/B/2801:2809	NA	NA
150	IL_5TCU_152 ➜	1/B/2679:2685,1/B/2690:2695	NA	NA
151	IL_5TCU_153 ➜	1/B/2707:2711,1/B/2752:2754	NA	NA
152	IL_5TCU_154 ➜	1/B/2714:2718,1/B/2745:2749	NA	NA
153	IL_5TCU_155 ➜	1/B/2721:2724,1/B/2737:2742	NA	NA
154	IL_5TCU_156 ➜	1/B/2764:2769,1/B/2789:2794	NA	NA
155	IL_5TCU_157 ➜	1/B/2858:2859,1/B/2898:2900	NA	NA
156	IL_5TCU_158 ➜	1/B/2863:2865,1/B/2891:2894	NA	NA
157	IL_5TCU_159 ➜	1/B/2867:2872,1/B/2885:2889	NA	NA
158	IL_5TCU_160 ➜	1/C/2:5,1/C/110:113	NA	NA
159	IL_5TCU_161 ➜	1/C/5:8,1/C/107:110	NA	NA
160	IL_5TCU_162 ➜	1/C/8:16,1/C/63:107	NA	NA
161	IL_5TCU_163 ➜	1/C/32:36,1/C/42:46	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_5TCU_072 ➜	missing nts	NA
2	IL_5TCU_112 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	J3_5TCU_001 ➜	1/A/45:48,1/A/369:375,1/A/401:406	NA	NA
2	J3_5TCU_002 ➜	1/A/594:596,1/A/659:662,1/A/762:763	NA	NA
3	J3_5TCU_003 ➜	1/A/680:681,1/A/725:733,1/A/740:742	NA	NA
4	J3_5TCU_004 ➜	1/A/834:837,1/A/867:871,1/A/878:884	NA	NA
5	J3_5TCU_005 ➜	1/A/965:972,1/A/983:994,1/A/1232:1236	NA	NA
6	J3_5TCU_006 ➜	1/A/1000:1003,1/A/1057:1059,1/A/1221:1226	NA	NA
7	J3_5TCU_007 ➜	1/A/1012:1018,1/A/1031:1036,1/A/1047:1050	NA	NA
8	J3_5TCU_008 ➜	1/A/1075:1080,1/A/1119:1125,1/A/1198:1204	NA	NA
9	J3_5TCU_009 ➜	1/A/1085:1087,1/A/1094:1099,1/A/1110:1114	NA	NA
10	J3_5TCU_010 ➜	1/B/30:31,1/B/520:527,1/B/554:555	NA	NA
11	J3_5TCU_011 ➜	1/B/55:67,1/B/74:76,1/B/109:114	NA	NA
12	J3_5TCU_012 ➜	1/B/272:276,1/B/295:302,1/B/415:416	NA	NA
13	J3_5TCU_013 ➜	1/B/727:735,1/B/817:822,1/B/832:840	NA	NA
14	J3_5TCU_014 ➜	1/B/743:745,1/B/777:782,1/B/804:808	NA	NA
15	J3_5TCU_015 ➜	1/B/1335:1340,1/B/1669:1671,1/B/1683:1686	NA	NA
16	J3_5TCU_016 ➜	1/B/1343:1346,1/B/1649:1655,1/B/1664:1666	NA	NA
17	J3_5TCU_017 ➜	1/B/1347:1351,1/B/1375:1382,1/B/1645:1648	NA	NA
18	J3_5TCU_018 ➜	1/B/2118:2120,1/B/2223:2228,1/B/2249:2255	NA	NA
19	J3_5TCU_019 ➜	1/B/2321:2324,1/B/2348:2350,1/B/2359:2365	NA	NA
20	J3_5TCU_020 ➜	1/B/2544:2547,1/B/2572:2574,1/B/2588:2594	NA	NA
21	J3_5TCU_021 ➜	1/B/2816:2817,1/B/2826:2831,1/B/2909:2913	NA	NA
22	J3_5TCU_022 ➜	1/B/2834:2835,1/B/2851:2856,1/B/2902:2906	NA	NA

Problematic loops

No problematic loops

Coloring options: Nucleotide numbers

5TCU Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops