Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5TGM_0011/1/38:45No text annotation
homologous
HL_5TBW_001
NA
HL_5TGM_0021/1/69:74No text annotation
homologous
HL_5TBW_002
NA
HL_5TGM_0031/1/90:96No text annotation
homologous
HL_5TBW_003
NA
HL_5TGM_0041/1/132:136No text annotation
homologous
HL_5TBW_004
NA
HL_5TGM_0051/1/194:201T-loop with 2 stacked bulged bases
homologous
HL_5TBW_005
NA
HL_5TGM_0061/1/208:212No text annotation
homologous
HL_5TBW_006
NA
HL_5TGM_0071/1/216:224T-loop with unstacked turn
homologous
HL_5TBW_007
NA
HL_5TGM_0081/1/278:287No text annotation
homologous
HL_5TBW_008
NA
HL_5TGM_0091/1/303:312Pseudoknot geometry
homologous
HL_5TBW_009
NA
HL_5TGM_0101/1/357:362GNRA
homologous
HL_8C3A_010
NA
HL_5TGM_0111/1/382:387GNRA
homologous
HL_5TBW_011
NA
HL_5TGM_2451/1/543:548No text annotation
homologous
HL_8P9A_231
HL_13189.1
HL_5TGM_0131/1/599:604GNRA
homologous
HL_5TBW_013
NA
HL_5TGM_2461/1/640:649T-loop with 2 stacked bulged bases
homologous
HL_8P9A_126
HL_28252.5
HL_5TGM_0151/1/686:694No text annotation
homologous
HL_5TBW_015
NA
HL_5TGM_0161/1/707:712GNRA
homologous
HL_8C3A_016
NA
HL_5TGM_0171/1/732:737GNRA
homologous
HL_5TBW_017
NA
HL_5TGM_0181/1/763:768No text annotation
homologous
HL_5TBW_018
NA
HL_5TGM_0191/1/844:849GNRA
homologous
HL_5TBW_019
NA
HL_5TGM_0201/1/876:885No text annotation
homologous
HL_5TBW_020
NA
HL_5TGM_0211/1/910:918No text annotation
homologous
HL_5TBW_021
NA
HL_5TGM_0221/1/958:963Externally structured
homologous
HL_5TBW_022
NA
HL_5TGM_0231/1/1023:1029GNRA
homologous
HL_5TBW_023
NA
HL_5TGM_0241/1/1076:1083No text annotation
geometric
HL_5TBW_024
NA
HL_5TGM_0251/1/1126:1132GNRA
homologous
HL_5TBW_025
NA
HL_5TGM_0261/1/1148:1155No text annotation
homologous
HL_8C3A_026
NA
HL_5TGM_0271/1/1239:1249No text annotation
homologous
HL_5TBW_027
NA
HL_5TGM_0281/1/1266:1275No text annotation
homologous
HL_5TBW_028
NA
HL_5TGM_0291/1/1347:1357No text annotation
homologous
HL_5TBW_029
NA
HL_5TGM_0301/1/1403:1408GNRA
homologous
HL_5TBW_030
NA
HL_5TGM_0311/1/1462:1470T-loop with 2 stacked bulged bases
homologous
HL_5TBW_031
NA
HL_5TGM_0321/1/1506:1512Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_5TGM_0331/1/1544:1549GNRA variation
homologous
HL_5TBW_033
NA
HL_5TGM_0351/1/1599:1608No text annotation
homologous
HL_5TBW_035
NA
HL_5TGM_0361/1/1634:1639GNRA
homologous
HL_5TBW_036
NA
HL_5TGM_0371/1/1680:1688No text annotation
homologous
HL_5TBW_037
NA
HL_5TGM_0381/1/1719:1725No text annotation
homologous
HL_5TBW_038
NA
HL_5TGM_2311/1/1759:1766No text annotation
homologous
HL_8P9A_150
HL_25967.2
HL_5TGM_0401/1/1792:1796Mini UNCG
homologous
HL_5TBW_040
NA
HL_5TGM_0411/1/1844:1851No text annotation
homologous
HL_5TBW_041
NA
HL_5TGM_0421/1/1862:1868GNRA
homologous
HL_5TBW_042
NA
HL_5TGM_0431/1/1923:1928UNCG
homologous
HL_5TBW_043
NA
HL_5TGM_0441/1/1953:2094No text annotation
geometric
HL_5TBW_044
NA
HL_5TGM_0451/1/2110:2114No text annotation
homologous
HL_5TBW_045
NA
HL_5TGM_0461/1/2135:2145No text annotation
homologous
HL_5TBW_046
NA
HL_5TGM_0471/1/2164:2170GNRA
homologous
HL_5TBW_047
NA
HL_5TGM_0481/1/2220:2225GNRA
homologous
HL_5TBW_048
NA
HL_5TGM_0491/1/2253:2263No text annotation
homologous
HL_5TBW_049
NA
HL_5TGM_0501/1/2292:2300No text annotation
homologous
HL_5TBW_050
NA
HL_5TGM_0511/1/2369:2378No text annotation
homologous
HL_5TBW_051
NA
HL_5TGM_0521/1/2441:2506No text annotation
homologous
HL_5TBW_052
NA
HL_5TGM_2321/1/2534:2545No text annotation
HL_5TGM_0541/1/2568:2573No text annotation
homologous
HL_5TBW_053
NA
HL_5TGM_0551/1/2616:2624No text annotation
geometric
HL_5TBW_054
NA
HL_5TGM_0561/1/2633:2645No text annotation
homologous
HL_5TBW_055
NA
HL_5TGM_0571/1/2673:2681No text annotation
homologous
HL_5TBW_056
NA
HL_5TGM_0581/1/2693:2700Pseudoknot geometry
homologous
HL_5TBW_057
NA
HL_5TGM_0591/1/2724:2732No text annotation
homologous
HL_5TBW_058
NA
HL_5TGM_0601/1/2744:2749GNRA
homologous
HL_5TBW_059
NA
HL_5TGM_0611/1/2776:2784Pseudoknot geometry
homologous
HL_5TBW_060
NA
HL_5TGM_0621/1/2840:2848No text annotation
homologous
HL_5TBW_061
NA
HL_5TGM_0631/1/2897:2904No text annotation
homologous
HL_8C3A_063
NA
HL_5TGM_0641/1/2920:2926No text annotation
homologous
HL_5TBW_063
NA
HL_5TGM_0651/1/2963:2968GNRA
homologous
HL_5TBW_064
NA
HL_5TGM_0661/1/3025:3030GNRA
homologous
HL_5TBW_065
NA
HL_5TGM_0671/1/3068:3073Ribsomal LSU H95
homologous
HL_5TBW_066
NA
HL_5TGM_0681/1/3110:3124No text annotation
homologous
HL_5TBW_067
NA
HL_5TGM_0691/1/3194:3197No text annotation
geometric
HL_5TBW_068
NA
HL_5TGM_0701/1/3240:3247No text annotation
homologous
HL_5TBW_069
NA
HL_5TGM_0711/1/3303:3311No text annotation
homologous
HL_5TBW_070
NA
HL_5TGM_0721/1/3350:3353Mini UNCG
geometric
HL_5TBW_071
NA
HL_5TGM_0731/2/7:17No text annotation
homologous
HL_4V88_186
NA
HL_5TGM_0741/2/70:81No text annotation
homologous
HL_4V88_187
NA
HL_5TGM_0751/2/154:160GNRA related
homologous
HL_4V88_188
NA
HL_5TGM_2341/2/189:196No text annotation
HL_5TGM_0761/2/190:195No text annotation
homologous
HL_4V88_189
NA
HL_5TGM_0771/2/228:237No text annotation
HL_5TGM_0781/2/243:250T-loop with 1 bulged base
homologous
HL_4V88_191
NA
HL_5TGM_0791/2/276:279Mini UNCG
geometric
HL_4WF9_037
HL_48778.1
HL_5TGM_0801/2/330:338GNRA related
homologous
HL_4V88_193
NA
HL_5TGM_0811/2/368:373No text annotation
homologous
HL_4V88_194
NA
HL_5TGM_0821/2/393:404No text annotation
homologous
HL_4V88_195
NA
HL_5TGM_0831/2/414:419UNCG
homologous
HL_4V88_196
NA
HL_5TGM_0841/2/450:456No text annotation
homologous
HL_4V88_197
NA
HL_5TGM_2471/2/487:500No text annotation
HL_5TGM_0861/2/520:532No text annotation
homologous
HL_4V88_199
NA
HL_5TGM_0871/2/569:574GNRA variation
homologous
HL_4V88_200
NA
HL_5TGM_0881/2/652:665No text annotation
HL_5TGM_0891/2/686:718No text annotation
HL_5TGM_0901/2/747:755No text annotation
homologous
HL_4V88_203
NA
HL_5TGM_2351/2/758:768No text annotation
HL_5TGM_0911/2/760:766No text annotation
geometric
HL_1WZ2_007
HL_75660.4
HL_5TGM_0921/2/812:826Pseudoknot geometry
homologous
HL_4V88_205
NA
HL_5TGM_0931/2/883:892No text annotation
homologous
HL_4V88_206
NA
HL_5TGM_0941/2/920:925GNRA
homologous
HL_4V88_207
NA
HL_5TGM_0951/2/980:990No text annotation
homologous
HL_4V88_208
NA
HL_5TGM_0961/2/1038:1047No text annotation
HL_5TGM_0971/2/1067:1072GNRA
homologous
HL_4V88_210
NA
HL_5TGM_0981/2/1104:1109GNRA
homologous
HL_4V88_211
NA
HL_5TGM_0991/2/1171:1180No text annotation
homologous
HL_4V88_212
NA
HL_5TGM_1001/2/1221:1230Anticodon loop related
homologous
HL_4V88_213
NA
HL_5TGM_1011/2/1279:1284GNRA
homologous
HL_4V88_214
NA
HL_5TGM_1021/2/1292:1299No text annotation
homologous
HL_4V88_215
NA
HL_5TGM_1031/2/1342:1347No text annotation
homologous
HL_4V88_216
NA
HL_5TGM_1041/2/1379:1385GNRA
homologous
HL_4V88_217
NA
HL_5TGM_1051/2/1484:1489GNRA
homologous
HL_4V88_218
NA
HL_5TGM_1061/2/1533:1544No text annotation
homologous
HL_4V88_219
NA
HL_5TGM_1071/2/1577:1585No text annotation
homologous
HL_4V88_220
NA
HL_5TGM_1091/2/1761:1766GNRA variation
homologous
HL_4V88_222
NA
HL_5TGM_2361/3/32:45No text annotation
homologous
HL_8P9A_183
HL_13971.1
HL_5TGM_1111/3/36:41No text annotation
geometric
HL_5TBW_185
NA
HL_5TGM_1121/3/88:93GNRA
homologous
HL_5TBW_186
NA
HL_5TGM_2371/4/47:56No text annotation
homologous
HL_8P4V_072
NA
HL_5TGM_1131/4/73:78GNRA variation
homologous
HL_5TBW_074
NA
HL_5TGM_1141/4/108:114No text annotation
homologous
HL_5TBW_075
NA
HL_5TGM_1151/4/124:129No text annotation
homologous
HL_5TBW_076
NA
HL_5TGM_1161/5/31:53No text annotation
HL_5TGM_1171/5/69:74No text annotation
homologous
HL_5TBW_002
NA
HL_5TGM_1181/5/90:96No text annotation
homologous
HL_5TBW_003
NA
HL_5TGM_1191/5/132:136No text annotation
homologous
HL_5TBW_004
NA
HL_5TGM_1201/5/194:201T-loop with 2 stacked bulged bases
homologous
HL_5TBW_005
NA
HL_5TGM_1211/5/208:212No text annotation
homologous
HL_5TBW_006
NA
HL_5TGM_1221/5/216:224T-loop with unstacked turn
homologous
HL_5TBW_007
NA
HL_5TGM_1231/5/278:287No text annotation
homologous
HL_5TBW_008
NA
HL_5TGM_1241/5/303:312Pseudoknot geometry
homologous
HL_5TBW_009
NA
HL_5TGM_1251/5/357:362GNRA
homologous
HL_5TBW_010
NA
HL_5TGM_1261/5/382:387GNRA
homologous
HL_5TBW_011
NA
HL_5TGM_1271/5/543:548No text annotation
geometric
HL_1U1Y_001
HL_48417.4
HL_5TGM_1281/5/599:604GNRA
homologous
HL_5TBW_013
NA
HL_5TGM_1291/5/640:649T-loop with 2 stacked bulged bases
homologous
HL_5TBW_014
NA
HL_5TGM_1301/5/686:694No text annotation
homologous
HL_5TBW_015
NA
HL_5TGM_1311/5/707:712GNRA
homologous
HL_5TBW_016
NA
HL_5TGM_1321/5/732:737GNRA
homologous
HL_5TBW_017
NA
HL_5TGM_1331/5/763:768No text annotation
geometric
HL_5TBW_018
NA
HL_5TGM_1341/5/844:849GNRA
homologous
HL_5TBW_019
NA
HL_5TGM_1351/5/876:885No text annotation
homologous
HL_5TBW_020
NA
HL_5TGM_1361/5/910:918No text annotation
homologous
HL_8C3A_021
NA
HL_5TGM_1371/5/958:963Externally structured
homologous
HL_5TBW_022
NA
HL_5TGM_2381/5/1020:1032No text annotation
HL_5TGM_1381/5/1023:1029No text annotation
HL_5TGM_1391/5/1076:1083No text annotation
homologous
HL_5TBW_024
NA
HL_5TGM_1401/5/1126:1132GNRA
homologous
HL_5TBW_025
NA
HL_5TGM_1411/5/1148:1155No text annotation
homologous
HL_8C3A_026
NA
HL_5TGM_2391/5/1239:1249No text annotation
homologous
HL_8P9A_139
HL_19210.3
HL_5TGM_1431/5/1267:1274GNRA wlth tandem sheared
homologous
HL_8C3A_028
NA
HL_5TGM_1441/5/1347:1357No text annotation
homologous
HL_8P9A_141
HL_29762.1
HL_5TGM_1451/5/1403:1408GNRA
homologous
HL_5TBW_030
NA
HL_5TGM_1461/5/1462:1470T-loop with 2 stacked bulged bases
homologous
HL_5TBW_031
NA
HL_5TGM_1471/5/1506:1512Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_5TGM_1481/5/1544:1549GNRA variation
homologous
HL_5TBW_033
NA
HL_5TGM_1501/5/1599:1608No text annotation
homologous
HL_5TBW_035
NA
HL_5TGM_1511/5/1634:1639GNRA
homologous
HL_5TBW_036
NA
HL_5TGM_1521/5/1680:1688No text annotation
homologous
HL_5TBW_037
NA
HL_5TGM_1531/5/1719:1725No text annotation
homologous
HL_5TBW_038
NA
HL_5TGM_2481/5/1760:1765No text annotation
homologous
HL_8CRE_038
HL_75660.4
HL_5TGM_1551/5/1792:1796Mini UNCG
homologous
HL_5TBW_040
NA
HL_5TGM_1561/5/1844:1851No text annotation
homologous
HL_5TBW_041
NA
HL_5TGM_1571/5/1862:1868GNRA
homologous
HL_5TBW_042
NA
HL_5TGM_1581/5/1923:1928UNCG
homologous
HL_8C3A_043
NA
HL_5TGM_1591/5/1952:2094No text annotation
HL_5TGM_1601/5/2110:2114No text annotation
homologous
HL_5TBW_045
NA
HL_5TGM_1611/5/2135:2145No text annotation
homologous
HL_8C3A_046
NA
HL_5TGM_1621/5/2164:2170GNRA
homologous
HL_5TBW_047
NA
HL_5TGM_1631/5/2220:2225GNRA
homologous
HL_5TBW_048
NA
HL_5TGM_1641/5/2253:2263No text annotation
homologous
HL_5TBW_049
NA
HL_5TGM_1651/5/2292:2300No text annotation
homologous
HL_5TBW_050
NA
HL_5TGM_1661/5/2369:2378No text annotation
homologous
HL_5TBW_051
NA
HL_5TGM_2411/5/2435:2512No text annotation
HL_5TGM_1671/5/2437:2510No text annotation
HL_5TGM_1681/5/2535:2544No text annotation
geometric
HL_5TBW_006
NA
HL_5TGM_1691/5/2568:2573Externally structured
geometric
HL_5TBW_022
NA
HL_5TGM_1701/5/2616:2624No text annotation
homologous
HL_5TBW_054
NA
HL_5TGM_1711/5/2633:2645No text annotation
homologous
HL_5TBW_055
NA
HL_5TGM_1721/5/2673:2681No text annotation
homologous
HL_5TBW_056
NA
HL_5TGM_1731/5/2693:2700Pseudoknot geometry
homologous
HL_5TBW_057
NA
HL_5TGM_1741/5/2724:2732No text annotation
homologous
HL_8C3A_059
NA
HL_5TGM_1751/5/2744:2749GNRA
homologous
HL_5TBW_059
NA
HL_5TGM_1761/5/2776:2784Pseudoknot geometry
homologous
HL_8C3A_061
NA
HL_5TGM_1771/5/2840:2848No text annotation
homologous
HL_5TBW_061
NA
HL_5TGM_1781/5/2897:2904No text annotation
homologous
HL_5TBW_062
NA
HL_5TGM_1791/5/2920:2926No text annotation
homologous
HL_5TBW_063
NA
HL_5TGM_1801/5/2963:2968GNRA
homologous
HL_5TBW_064
NA
HL_5TGM_1811/5/3025:3030GNRA
homologous
HL_5TBW_065
NA
HL_5TGM_1821/5/3068:3073Ribsomal LSU H95
homologous
HL_5TBW_066
NA
HL_5TGM_1831/5/3110:3124No text annotation
homologous
HL_5TBW_067
NA
HL_5TGM_1841/5/3193:3199Other HL
geometric
HL_5J7L_200
HL_08100.1
HL_5TGM_1851/5/3240:3247No text annotation
homologous
HL_5TBW_069
NA
HL_5TGM_1861/5/3303:3311No text annotation
homologous
HL_5TBW_070
NA
HL_5TGM_1871/5/3350:3353Mini UNCG
homologous
HL_8C3A_072
NA
HL_5TGM_1881/6/7:17No text annotation
homologous
HL_8C3A_192
NA
HL_5TGM_1891/6/70:81No text annotation
homologous
HL_4V88_187
NA
HL_5TGM_1901/6/154:160GNRA related
homologous
HL_4V88_188
NA
HL_5TGM_1911/6/190:195No text annotation
homologous
HL_4V88_189
NA
HL_5TGM_1931/6/243:250T-loop with 1 bulged base
homologous
HL_4V88_191
NA
HL_5TGM_1941/6/276:279Mini UNCG
geometric
HL_4V88_192
NA
HL_5TGM_1951/6/330:338GNRA related
homologous
HL_4V88_193
NA
HL_5TGM_1961/6/368:373No text annotation
homologous
HL_4V88_194
NA
HL_5TGM_1971/6/393:404No text annotation
homologous
HL_4V88_195
NA
HL_5TGM_1981/6/414:419UNCG
geometric
HL_4V88_196
NA
HL_5TGM_1991/6/450:456No text annotation
homologous
HL_4V88_197
NA
HL_5TGM_2491/6/486:501No text annotation
homologous
HL_8P9A_234
HL_64292.1
HL_5TGM_2011/6/520:532No text annotation
geometric
HL_4V88_199
NA
HL_5TGM_2021/6/569:574GNRA variation
homologous
HL_4V88_200
NA
HL_5TGM_2501/6/716:722No text annotation
geometric
HL_8CRE_038
HL_75660.4
HL_5TGM_2051/6/764:772No text annotation
homologous
HL_4V88_203
NA
HL_5TGM_2061/6/777:783No text annotation
homologous
HL_4V88_204
NA
HL_5TGM_2071/6/829:843Pseudoknot geometry
homologous
HL_4V88_205
NA
HL_5TGM_2081/6/900:909No text annotation
homologous
HL_4V88_206
NA
HL_5TGM_2091/6/937:942GNRA
homologous
HL_4V88_207
NA
HL_5TGM_2101/6/997:1007No text annotation
homologous
HL_4V88_208
NA
HL_5TGM_2111/6/1055:1064No text annotation
homologous
HL_4V88_209
NA
HL_5TGM_2121/6/1084:1089GNRA
homologous
HL_4V88_210
NA
HL_5TGM_2131/6/1121:1126GNRA
homologous
HL_4V88_211
NA
HL_5TGM_2141/6/1188:1197No text annotation
homologous
HL_4V88_212
NA
HL_5TGM_2151/6/1238:1247Anticodon loop related
homologous
HL_4V88_213
NA
HL_5TGM_2161/6/1296:1301GNRA
homologous
HL_4V88_214
NA
HL_5TGM_2171/6/1309:1316No text annotation
homologous
HL_4V88_215
NA
HL_5TGM_2181/6/1359:1364No text annotation
homologous
HL_4V88_216
NA
HL_5TGM_2191/6/1396:1402GNRA
homologous
HL_4V88_217
NA
HL_5TGM_2201/6/1501:1506GNRA
homologous
HL_4V88_218
NA
HL_5TGM_2211/6/1550:1561No text annotation
homologous
HL_4V88_219
NA
HL_5TGM_2221/6/1594:1602No text annotation
homologous
HL_4V88_220
NA
HL_5TGM_2421/6/1688:1713No text annotation
HL_5TGM_2241/6/1778:1783GNRA variation
homologous
HL_4V88_222
NA
HL_5TGM_2431/7/32:45No text annotation
homologous
HL_8P9A_183
HL_13971.1
HL_5TGM_2251/7/36:41No text annotation
homologous
HL_5TBW_185
NA
HL_5TGM_2261/7/88:93GNRA
homologous
HL_5TBW_186
NA
HL_5TGM_2441/8/47:56No text annotation
homologous
HL_8P9A_186
HL_93438.2
HL_5TGM_2271/8/69:89No text annotation
homologous
HL_8P9A_187
HL_51921.1
HL_5TGM_2281/8/108:114No text annotation
homologous
HL_5TBW_075
NA
HL_5TGM_2291/8/124:129No text annotation
homologous
HL_5TBW_076
NA

Problematic loops

#loop idProblemSequence
HL_5TGM_012No text annotation
HL_5TGM_230No text annotation
HL_5TGM_014No text annotation
HL_5TGM_034No text annotation
HL_5TGM_039No text annotation
HL_5TGM_053No text annotation
HL_5TGM_233No text annotation
HL_5TGM_085No text annotation
HL_5TGM_108No text annotation
HL_5TGM_110No text annotation
HL_5TGM_142tRNA D-loop
HL_5TGM_149No text annotation
HL_5TGM_154No text annotation
HL_5TGM_240GNRA with extra cWW
HL_5TGM_192No text annotation
HL_5TGM_200No text annotation
HL_5TGM_203No text annotation
HL_5TGM_204No text annotation
HL_5TGM_223No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5TGM_0021/1/7:8,
1/4/150:152
Single bulged C
homologous
IL_5TBW_002
NA
IL_5TGM_0031/1/13:15,
1/4/144:145
Single bulged U
homologous
IL_5TBW_003
NA
IL_5TGM_0041/1/27:28,
1/1/56:58
Single stack bend
homologous
IL_5TBW_004
NA
IL_5TGM_0051/1/31:38,
1/1/45:53
tSH-tHW-tHH-tHS
geometric
IL_5TBW_005
NA
IL_5TGM_0061/1/82:89,
1/1/97:103
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_006
NA
IL_5TGM_0071/1/123:124,
1/1/144:149
No text annotation
homologous
IL_5TBW_007
NA
IL_5TGM_0081/1/125:127,
1/1/141:143
Isolated non-canonical cWW pair
homologous
IL_5TBW_008
NA
IL_5TGM_4681/1/163:165,
1/1/257:258
Single stack bend
homologous
IL_8P9A_238
IL_90729.1
IL_5TGM_0101/1/169:170,
1/1/248:253
No text annotation
homologous
IL_5TBW_010
NA
IL_5TGM_5171/1/177:178,
1/1/238:241
No text annotation
IL_5TGM_0121/1/189:191,
1/1/204:205
Single bulged U
homologous
IL_5TBW_012
NA
IL_5TGM_0131/1/337:339,
1/4/25:26
Single bulged A
homologous
IL_5TBW_013
NA
IL_5TGM_0141/1/376:379,
1/1/390:403
No text annotation
homologous
IL_5TBW_014
NA
IL_5TGM_0151/1/404:410,
1/4/13:19
Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_5TGM_0161/1/429:431,
1/1/628:630
Isolated non-canonical cWW pair
homologous
IL_5TBW_016
NA
IL_5TGM_0171/1/435:495,
1/1/618:624
Kink-turn related
homologous
IL_5TBW_017
NA
IL_5TGM_0181/1/512:513,
1/1/577:579
Single bulged A
homologous
IL_5TBW_018
NA
IL_5TGM_0191/1/517:525,
1/1/567:573
No text annotation
homologous
IL_5TBW_019
NA
IL_5TGM_0201/1/531:538,
1/1/553:561
No text annotation
homologous
IL_5TBW_020
NA
IL_5TGM_0211/1/668:670,
1/1/792:794
Isolated non-canonical cWW pair
homologous
IL_5TBW_021
NA
IL_5TGM_0221/1/680:684,
1/1/696:700
No text annotation
homologous
IL_5TBW_022
NA
IL_5TGM_0231/1/725:728,
1/1/741:745
UAA/GAN
homologous
IL_5TBW_023
NA
IL_5TGM_0241/1/752:753,
1/1/779:781
Single bulged A
homologous
IL_8C3A_026
NA
IL_5TGM_0251/1/755:756,
1/1/775:777
Single bulged U
homologous
IL_5TBW_025
NA
IL_5TGM_0261/1/758:763,
1/1/768:773
No text annotation
geometric
IL_5TBW_026
NA
IL_5TGM_0271/1/803:805,
1/1/938:940
Isolated non-canonical cWW pair
homologous
IL_5TBW_027
NA
IL_5TGM_0281/1/805:809,
1/1/931:938
tHW-tHW cross-strand stack
geometric
IL_5TBW_028
NA
IL_5TGM_0291/1/833:834,
1/1/859:861
Single bulged G
geometric
IL_5TBW_029
NA
IL_5TGM_0301/1/834:838,
1/1/855:859
Triple sheared
homologous
IL_5TBW_030
NA
IL_5TGM_0311/1/869:872,
1/1/888:890
Major groove platform with extra cWW
homologous
IL_5TBW_031
NA
IL_5TGM_0321/1/873:875,
1/1/886:887
Single bulged U
homologous
IL_5TBW_032
NA
IL_5TGM_0331/1/907:909,
1/1/919:923
No text annotation
homologous
IL_8C3A_036
NA
IL_5TGM_0341/1/954:956,
1/1/965:967
Isolated non-canonical cWW pair
homologous
IL_5TBW_034
NA
IL_5TGM_0351/1/969:970,
1/1/1111:1113
Single stack bend
homologous
IL_5TBW_035
NA
IL_5TGM_0361/1/977:981,
1/1/1102:1104
180 degree turn
homologous
IL_5TBW_036
NA
IL_5TGM_0371/1/983:985,
1/1/1099:1100
Single bulged G
homologous
IL_5TBW_037
NA
IL_5TGM_0381/1/991:997,
1/1/1052:1058
7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5TBW_038
NA
IL_5TGM_0391/1/997:998,
1/1/1050:1052
Minor groove platform
homologous
IL_5TBW_039
NA
IL_5TGM_0401/1/999:1004,
1/1/1046:1049
C-loop
homologous
IL_5TBW_040
NA
IL_5TGM_4691/1/1006:1009,
1/1/1041:1044
No text annotation
homologous
IL_8P9A_269
IL_77658.1
IL_5TGM_0421/1/1009:1011,
1/1/1039:1041
Isolated non-canonical cWW pair
geometric
IL_5TBW_042
NA
IL_5TGM_4701/1/1014:1018,
1/1/1034:1036
No text annotation
homologous
IL_8P9A_271
IL_11415.1
IL_5TGM_0441/1/1069:1071,
1/1/1087:1089
Isolated non-canonical cWW pair
homologous
IL_5TBW_044
NA
IL_5TGM_0451/1/1074:1076,
1/1/1083:1084
Single bulged A
homologous
IL_5TBW_045
NA
IL_5TGM_0461/1/1120:1122,
1/1/1136:1138
Isolated non-canonical cWW pair
homologous
IL_5TBW_046
NA
IL_5TGM_0481/1/1167:1171,
1/1/1328:1332
UAA/GAN
homologous
IL_5TBW_048
NA
IL_5TGM_0491/1/1173:1180,
1/1/1325:1326
SSU/LSU pseudoknot
homologous
IL_5TBW_049
NA
IL_5TGM_0501/1/1180:1182,
1/1/1324:1325
Single bulged U
geometric
IL_5TBW_050
NA
IL_5TGM_0511/1/1187:1194,
1/1/1314:1319
No text annotation
geometric
IL_5TBW_051
NA
IL_5TGM_0521/1/1194:1205,
1/1/1299:1314
No text annotation
geometric
IL_5TBW_052
NA
IL_5TGM_0531/1/1207:1209,
1/1/1296:1297
Single bulged U
homologous
IL_5TBW_053
NA
IL_5TGM_0541/1/1218:1226,
1/1/1283:1287
Kink-turn
homologous
IL_5TBW_054
NA
IL_5TGM_5181/1/1234:1238,
1/1/1250:1254
No text annotation
homologous
IL_8P9A_283
IL_16218.2
IL_5TGM_0561/1/1262:1266,
1/1/1275:1277
Major groove platform with extra cWW
geometric
IL_5TBW_056
NA
IL_5TGM_0571/1/1376:1378,
1/1/1428:1431
Isolated cWS basepair
homologous
IL_5TBW_057
NA
IL_5TGM_0581/1/1385:1387,
1/1/1420:1421
Single bulged A
homologous
IL_5TBW_058
NA
IL_5TGM_0591/1/1388:1395,
1/1/1415:1419
Kink-turn
homologous
IL_5TBW_059
NA
IL_5TGM_0601/1/1398:1400,
1/1/1411:1412
Single bulged A
homologous
IL_5TBW_060
NA
IL_5TGM_0611/1/1444:1450,
1/1/2354:2359
7x6 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_061
NA
IL_5TGM_4711/1/1501:1505,
1/1/1513:1515
C-loop
homologous
IL_8P9A_290
IL_63596.11
IL_5TGM_0631/1/1532:1536,
1/1/1585:1590
UAA/GAN
homologous
IL_5TBW_063
NA
IL_5TGM_0641/1/1618:1621,
1/1/1824:1826
Other IL
homologous
IL_5TBW_064
NA
IL_5TGM_5191/1/1623:1624,
1/1/1819:1822
Major groove platform related
homologous
IL_8P9A_293
IL_48076.5
IL_5TGM_0661/1/1627:1631,
1/1/1811:1816
No text annotation
geometric
IL_5TBW_066
NA
IL_5TGM_0671/1/1645:1649,
1/1/1806:1810
Triple sheared
geometric
IL_5TBW_067
NA
IL_5TGM_0681/1/1661:1663,
1/1/1786:1788
Isolated non-canonical cWW pair
homologous
IL_5TBW_068
NA
IL_5TGM_0691/1/1669:1670,
1/1/1778:1780
Single bulged C
geometric
IL_5TBW_069
NA
IL_5TGM_0701/1/1670:1671,
1/1/1776:1778
Single stack bend
homologous
IL_5TBW_070
NA
IL_5TGM_0711/1/1694:1698,
1/1/1747:1752
No text annotation
homologous
IL_5TBW_071
NA
IL_5TGM_0721/1/1702:1707,
1/1/1737:1743
No text annotation
homologous
IL_5TBW_072
NA
IL_5TGM_0731/1/1711:1717,
1/1/1727:1733
Kink-turn
homologous
IL_5TBW_073
NA
IL_5TGM_0741/1/1883:1889,
1/1/2346:2349
No text annotation
homologous
IL_5TBW_074
NA
IL_5TGM_0751/1/1895:1897,
1/1/2338:2340
Isolated tWW turn
homologous
IL_5TBW_075
NA
IL_5TGM_0761/1/1898:1901,
1/1/2336:2337
Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA
IL_5TGM_4741/1/1898:1906,
1/1/2333:2337
No text annotation
homologous
IL_8P9A_305
IL_22854.4
IL_5TGM_0771/1/1901:1906,
1/1/2333:2336
Intercalated tWH
homologous
IL_5TBW_077
NA
IL_5TGM_0781/1/1918:1923,
1/1/1928:1934
tSH-tSH-tHH-tHS
geometric
IL_5TBW_078
NA
IL_5TGM_0791/1/1940:1942,
1/1/2106:2108
Isolated non-canonical cWW pair
homologous
IL_5TBW_079
NA
IL_5TGM_0801/1/1947:1948,
1/1/2098:2101
No text annotation
homologous
IL_5TBW_080
NA
IL_5TGM_5201/1/1951:1953,
1/1/2094:2095
No text annotation
IL_5TGM_0821/1/2128:2129,
1/1/2323:2325
Single bulged A
homologous
IL_8C3A_087
NA
IL_5TGM_0831/1/2156:2161,
1/1/2173:2180
Kink-turn related
homologous
IL_5TBW_083
NA
IL_5TGM_0841/1/2196:2199,
1/1/2245:2246
Major groove intercalation
homologous
IL_5TBW_084
NA
IL_5TGM_0851/1/2200:2201,
1/1/2241:2244
Major groove intercalation
homologous
IL_5TBW_085
NA
IL_5TGM_0861/1/2204:2206,
1/1/2237:2238
Single bulged U
homologous
IL_5TBW_086
NA
IL_5TGM_0871/1/2206:2210,
1/1/2235:2237
Major groove platform with extra pair
geometric
IL_5TBW_087
NA
IL_5TGM_0881/1/2211:2217,
1/1/2228:2234
No text annotation
homologous
IL_5TBW_088
NA
IL_5TGM_0891/1/2276:2277,
1/1/2307:2310
Bulged stacked bases
geometric
IL_5TBW_089
NA
IL_5TGM_0901/1/2277:2288,
1/1/2304:2307
No text annotation
homologous
IL_5TBW_090
NA
IL_5TGM_0911/1/2391:2394,
1/1/2986:2988
Major groove platform with extra pair
homologous
IL_5TBW_091
NA
IL_5TGM_0921/1/2396:2398,
1/1/2981:2984
Major groove platform with intercalation
homologous
IL_5TBW_092
NA
IL_5TGM_0931/1/2409:2411,
1/1/2811:2812
Single bulged U
homologous
IL_5TBW_093
NA
IL_5TGM_0941/1/2412:2413,
1/1/2807:2810
Minor groove platform
homologous
IL_5TBW_094
NA
IL_5TGM_0951/1/2423:2425,
1/1/2604:2607
Isolated tHS basepair with bulges
homologous
IL_5TBW_095
NA
IL_5TGM_0961/1/2520:2526,
1/1/2584:2587
No text annotation
homologous
IL_5TBW_096
NA
IL_5TGM_0971/1/2614:2615,
1/1/2625:2627
Single bulged A
homologous
IL_8C3A_107
NA
IL_5TGM_0991/1/2666:2668,
1/1/2686:2690
Isolated tHS basepair with bulges
homologous
IL_5TBW_099
NA
IL_5TGM_1001/1/2718:2721,
1/1/2735:2738
Tandem non-canonical cWW pairs
homologous
IL_5TBW_100
NA
IL_5TGM_1011/1/2770:2773,
1/1/2787:2788
Single stack bend with bulge
homologous
IL_5TBW_101
NA
IL_5TGM_1021/1/2823:2824,
1/1/2865:2867
Major groove platform
geometric
IL_5TBW_102
NA
IL_5TGM_1031/1/2824:2826,
1/1/2863:2865
Isolated non-canonical cWW pair
geometric
IL_5TBW_103
NA
IL_5TGM_1041/1/2826:2828,
1/1/2862:2863
Major groove platform
geometric
IL_5TBW_104
NA
IL_5TGM_1051/1/2828:2830,
1/1/2858:2862
Major groove minor groove platform with extra cWW
homologous
IL_5TBW_105
NA
IL_5TGM_1061/1/2835:2839,
1/1/2849:2853
Triple sheared
homologous
IL_5TBW_106
NA
IL_5TGM_1071/1/2876:2877,
1/1/2949:2951
Major groove platform
homologous
IL_8C3A_115
NA
IL_5TGM_1081/1/2879:2881,
1/1/2943:2947
Isolated non-canonical cWW with bulges
geometric
IL_5TBW_108
NA
IL_5TGM_1091/1/2881:2882,
1/1/2940:2943
Multiple bulged bases
homologous
IL_5TBW_109
NA
IL_5TGM_1101/1/2889:2891,
1/1/2912:2914
Isolated non-canonical cWW pair
geometric
IL_5TBW_110
NA
IL_5TGM_4761/1/2889:2892,
1/1/2909:2914
No text annotation
homologous
IL_8P9A_338
IL_07469.2
IL_5TGM_1111/1/2891:2892,
1/1/2909:2912
Major groove platform with intercalation
homologous
IL_8C3A_119
NA
IL_5TGM_1121/1/2918:2920,
1/1/2926:2928
Isolated non-canonical cWW pair
geometric
IL_5TBW_112
NA
IL_5TGM_1131/1/2959:2961,
1/1/2970:2973
Isolated non-canonical cWW pair
geometric
IL_4E48_001
IL_87907.1
IL_5TGM_1141/1/3004:3007,
1/1/3139:3144
Double sheared
homologous
IL_5TBW_114
NA
IL_5TGM_1151/1/3012:3014,
1/1/3040:3042
Isolated non-canonical cWW pair
homologous
IL_5TBW_115
NA
IL_5TGM_1161/1/3018:3025,
1/1/3030:3036
8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_5TGM_1171/1/3047:3051,
1/1/3091:3094
Major groove minor groove platform with tHH
homologous
IL_5TBW_117
NA
IL_5TGM_1181/1/3054:3059,
1/1/3084:3088
UAA/GAN related
homologous
IL_5TBW_118
NA
IL_5TGM_1191/1/3063:3064,
1/1/3077:3080
Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_5TGM_1201/1/3103:3107,
1/1/3127:3131
UAA/GAN
homologous
IL_5TBW_120
NA
IL_5TGM_5211/1/3163:3166,
1/1/3284:3287
No text annotation
geometric
IL_1CSL_001
IL_25872.4
IL_5TGM_5221/1/3168:3170,
1/1/3280:3282
Isolated non-canonical cWW pair
homologous
IL_8P9A_350
IL_28037.1
IL_5TGM_1231/1/3177:3179,
1/1/3210:3211
Single bulged A
geometric
IL_5TBW_123
NA
IL_5TGM_1241/1/3179:3188,
1/1/3204:3210
No text annotation
homologous
IL_5TBW_124
NA
IL_5TGM_1251/1/3193:3194,
1/1/3197:3199
Single bulged U
homologous
IL_5TBW_125
NA
IL_5TGM_1261/1/3225:3229,
1/1/3258:3260
No text annotation
homologous
IL_5TBW_126
NA
IL_5TGM_1271/1/3233:3235,
1/1/3252:3254
Isolated non-canonical cWW pair
geometric
IL_5TBW_127
NA
IL_5TGM_1281/1/3235:3238,
1/1/3249:3252
Tandem non-canonical cWW pairs
homologous
IL_5TBW_128
NA
IL_5TGM_1291/1/3300:3303,
1/1/3311:3314
Tandem non-canonical cWW pairs
homologous
IL_8C3A_135
NA
IL_5TGM_1301/1/3318:3320,
1/1/3387:3388
Single bulged U
homologous
IL_5TBW_130
NA
IL_5TGM_1311/1/3324:3325,
1/1/3381:3383
Single bulged U
homologous
IL_5TBW_131
NA
IL_5TGM_1321/1/3328:3330,
1/1/3373:3378
Isolated non-canonical cWW pair
homologous
IL_5TBW_132
NA
IL_5TGM_1331/1/3332:3337,
1/1/3367:3371
No text annotation
homologous
IL_5TBW_133
NA
IL_5TGM_1341/1/3340:3342,
1/1/3363:3364
Single bulged U
homologous
IL_5TBW_134
NA
IL_5TGM_1351/1/3342:3345,
1/1/3360:3363
Double sheared; A in syn
geometric
IL_5TBW_135
NA
IL_5TGM_1361/1/3349:3350,
1/1/3353:3356
Multiple bulged bases
homologous
IL_5TBW_136
NA
IL_5TGM_1371/2/24:26,
1/2/600:601
Single bulged C
homologous
IL_4V88_384
NA
IL_5TGM_1381/2/35:37,
1/2/471:473
Isolated non-canonical cWW pair
homologous
IL_4V88_385
NA
IL_5TGM_1391/2/37:41,
1/2/466:471
Triple sheared related
geometric
IL_4V88_386
NA
IL_5TGM_1401/2/42:48,
1/2/431:433
No text annotation
homologous
IL_4V88_387
NA
IL_5TGM_1411/2/50:52,
1/2/428:429
Minor groove platform
homologous
IL_4V88_388
NA
IL_5TGM_1421/2/58:63,
1/2/87:89
No text annotation
homologous
IL_4V88_389
NA
IL_5TGM_1431/2/64:69,
1/2/82:86
No text annotation
homologous
IL_4V88_390
NA
IL_5TGM_5231/2/109:112,
1/2/302:305
No text annotation
homologous
IL_8P9A_380
IL_77658.1
IL_5TGM_1451/2/113:116,
1/2/300:301
Multiple bulged bases
homologous
IL_4V88_392
NA
IL_5TGM_1461/2/117:122,
1/2/295:299
No text annotation
homologous
IL_4V88_393
NA
IL_5TGM_1471/2/143:149,
1/2/165:172
tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA
IL_5TGM_1481/2/150:152,
1/2/162:164
Isolated cWH basepair
geometric
IL_6RA4_002
IL_10167.4
IL_5TGM_1491/2/186:189,
1/2/196:199
Double sheared
homologous
IL_4V88_396
NA
IL_5TGM_1501/2/204:206,
1/2/259:263
Major groove platform with extra cWW
homologous
IL_4V88_397
NA
IL_5TGM_1511/2/206:208,
1/2/257:259
Isolated non-canonical cWW pair
geometric
IL_4V88_398
NA
IL_5TGM_1521/2/265:267,
1/2/288:289
Single bulged A
homologous
IL_4V88_399
NA
IL_5TGM_1531/2/270:273,
1/2/283:285
No text annotation
homologous
IL_4V88_400
NA
IL_5TGM_1541/2/274:276,
1/2/279:282
Intercalated cWW
geometric
IL_7RQB_025
NA
IL_5TGM_1551/2/311:316,
1/2/348:355
Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_5TGM_1561/2/318:323,
1/2/345:346
No text annotation
homologous
IL_4V88_403
NA
IL_5TGM_1571/2/363:365,
1/2/376:381
No text annotation
homologous
IL_4V88_404
NA
IL_5TGM_1581/2/389:391,
1/2/406:408
Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_5TGM_1591/2/411:413,
1/2/420:422
Isolated near basepair
homologous
IL_4V88_406
NA
IL_5TGM_1601/2/439:441,
1/2/463:464
Single bulged U
homologous
IL_4V88_407
NA
IL_5TGM_5241/2/443:447,
1/2/460:461
No text annotation
homologous
IL_8P9A_397
IL_03109.2
IL_5TGM_5251/2/447:448,
1/2/458:460
No text annotation
homologous
IL_8CRE_415
IL_00225.12
IL_5TGM_4791/2/480:485,
1/2/502:508
No text annotation
IL_5TGM_1631/2/517:520,
1/2/532:535
Double sheared
geometric
IL_4WF9_016
IL_09705.14
IL_5TGM_1641/2/550:557,
1/2/587:588
SSU/LSU pseudoknot
geometric
IL_4V88_413
NA
IL_5TGM_1651/2/557:559,
1/2/586:587
Single bulged U
homologous
IL_4V88_414
NA
IL_5TGM_5261/2/562:568,
1/2/575:583
No text annotation
homologous
IL_8CRE_423
IL_54177.3
IL_5TGM_1671/2/616:622,
1/2/1087:1088
No text annotation
homologous
IL_4V88_416
NA
IL_5TGM_1681/2/624:626,
1/2/956:958
Isolated non-canonical cWW pair
homologous
IL_4V88_417
NA
IL_5TGM_1691/2/627:631,
1/2/951:955
tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_5TGM_1701/2/646:648,
1/2/669:671
Isolated non-canonical cWW pair
geometric
IL_4J50_002
IL_87907.1
IL_5TGM_5161/2/652:658,
1/2/659:665
No text annotation
IL_5TGM_5271/2/729:730,
1/2/785:788
No text annotation
homologous
IL_8CRE_428
IL_68140.3
IL_5TGM_1721/2/731:733,
1/2/782:784
Isolated non-canonical cWW pair
homologous
IL_4V88_424
NA
IL_5TGM_5281/2/734:742,
1/2/774:781
No text annotation
homologous
IL_8P9A_414
IL_59049.1
IL_5TGM_1741/2/800:805,
1/2/833:837
Partly complementary
geometric
IL_6CZR_167
IL_49751.3
IL_5TGM_1751/2/805:807,
1/2/832:833
No text annotation
IL_5TGM_1761/2/807:808,
1/2/830:832
No text annotation
IL_5TGM_1771/2/848:849,
1/2/945:948
Major groove platform; stack outside cWW
geometric
IL_4V88_428
NA
IL_5TGM_1781/2/851:853,
1/2/940:943
Isolated non-canonical cWW pair
geometric
IL_3TD0_005
IL_57744.1
IL_5TGM_1791/2/854:857,
1/2/936:939
Tandem non-canonical cWW pairs
geometric
IL_4V88_430
NA
IL_5TGM_1801/2/857:861,
1/2/933:936
Tandem non-canonical cWW pairs
homologous
IL_4V88_431
NA
IL_5TGM_1811/2/868:871,
1/2/907:910
Tandem non-canonical cWW pairs
homologous
IL_4V88_432
NA
IL_5TGM_1821/2/876:882,
1/2/893:902
Kink-turn related
homologous
IL_8C3A_440
NA
IL_5TGM_1831/2/968:973,
1/2/997:999
Other IL
geometric
IL_4V88_435
NA
IL_5TGM_1841/2/973:977,
1/2/993:997
tSH-tHW-tHS
homologous
IL_4V88_436
NA
IL_5TGM_1851/2/1017:1019,
1/2/1078:1084
No text annotation
homologous
IL_4V88_437
NA
IL_5TGM_1861/2/1024:1027,
1/2/1057:1060
Tandem non-canonical cWW pairs
geometric
IL_8C3A_444
NA
IL_5TGM_1871/2/1034:1036,
1/2/1049:1050
Single bulged U
homologous
IL_4V88_439
NA
IL_5TGM_1881/2/1094:1101,
1/2/1112:1117
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_5TGM_1891/2/1129:1130,
1/2/1613:1615
Single bulged A
homologous
IL_4V88_441
NA
IL_5TGM_1901/2/1132:1134,
1/2/1610:1611
Single bulged G
homologous
IL_4V88_442
NA
IL_5TGM_1911/2/1140:1143,
1/2/1600:1604
C-loop
homologous
IL_4V88_443
NA
IL_5TGM_1921/2/1156:1158,
1/2/1447:1449
Isolated non-canonical cWW pair
homologous
IL_4V88_444
NA
IL_5TGM_1931/2/1161:1162,
1/2/1442:1444
Minor groove platform
homologous
IL_4V88_445
NA
IL_5TGM_1941/2/1196:1198,
1/2/1431:1433
Isolated non-canonical cWW pair
geometric
IL_4V88_446
NA
IL_5TGM_5291/2/1207:1213,
1/2/1240:1242
No text annotation
IL_5TGM_5301/2/1207:1216,
1/2/1235:1242
No text annotation
homologous
IL_8P9A_470
IL_28304.1
IL_5TGM_1961/2/1213:1216,
1/2/1235:1240
No text annotation
IL_5TGM_1971/2/1217:1219,
1/2/1232:1234
No text annotation
homologous
IL_4V88_448
NA
IL_5TGM_1981/2/1251:1253,
1/2/1423:1424
Single bulged U
homologous
IL_4V88_449
NA
IL_5TGM_1991/2/1255:1259,
1/2/1419:1421
Isolated cWS basepair
geometric
IL_4LFB_044
IL_76319.4
IL_5TGM_4841/2/1255:1261,
1/2/1413:1421
No text annotation
homologous
IL_8P9A_439
IL_86012.1
IL_5TGM_2001/2/1259:1261,
1/2/1413:1419
Minor groove platform with extra cWW
homologous
IL_4V88_451
NA
IL_5TGM_2011/2/1263:1264,
1/2/1409:1411
Single bulged A
homologous
IL_4V88_452
NA
IL_5TGM_2021/2/1273:1275,
1/2/1306:1308
Isolated cWH basepair
homologous
IL_4V88_453
NA
IL_5TGM_2031/2/1289:1291,
1/2/1300:1301
Minor groove platform
homologous
IL_4V88_454
NA
IL_5TGM_2041/2/1322:1325,
1/2/1366:1368
Isolated non-canonical cWW pair
homologous
IL_4V88_455
NA
IL_5TGM_5311/2/1328:1331,
1/2/1360:1363
No text annotation
homologous
IL_8CRE_481
IL_78800.1
IL_5TGM_2061/2/1335:1337,
1/2/1352:1356
Isolated non-canonical cWW pair
homologous
IL_4V88_457
NA
IL_5TGM_2071/2/1372:1374,
1/2/1390:1395
Major groove platform; stack outside cWW
homologous
IL_4V88_458
NA
IL_5TGM_5321/2/1463:1470,
1/2/1502:1510
No text annotation
homologous
IL_8CRE_462
IL_91698.1
IL_5TGM_2091/2/1471:1477,
1/2/1496:1501
180 degree turn
homologous
IL_4V88_460
NA
IL_5TGM_2101/2/1478:1481,
1/2/1492:1495
Tandem non-canonical cWW pairs
homologous
IL_4V88_461
NA
IL_5TGM_5331/2/1523:1528,
1/2/1549:1554
No text annotation
homologous
IL_8CRE_465
IL_85536.2
IL_5TGM_2121/2/1619:1621,
1/2/1747:1750
No text annotation
homologous
IL_4V88_463
NA
IL_5TGM_2131/2/1621:1624,
1/2/1743:1747
No text annotation
geometric
IL_4V88_464
NA
IL_5TGM_2141/2/1625:1627,
1/2/1740:1742
Isolated non-canonical cWW pair
geometric
IL_4V88_465
NA
IL_5TGM_2151/2/1627:1630,
1/2/1736:1740
Non canonical cWW and near pair
homologous
IL_4V88_466
NA
IL_5TGM_2161/2/1633:1635,
1/2/1731:1733
Isolated non-canonical cWW pair
homologous
IL_4V88_467
NA
IL_5TGM_2171/2/1636:1639,
1/2/1727:1730
Double sheared
geometric
IL_4V88_468
NA
IL_5TGM_4861/2/1636:1641,
1/2/1726:1730
No text annotation
IL_5TGM_2181/2/1639:1641,
1/2/1726:1727
Single bulged U
homologous
IL_4V88_469
NA
IL_5TGM_2191/2/1648:1650,
1/2/1717:1719
Isolated non-canonical cWW pair
homologous
IL_4V88_470
NA
IL_5TGM_2201/2/1652:1655,
1/2/1712:1715
Double sheared
homologous
IL_4V88_471
NA
IL_5TGM_2211/2/1655:1657,
1/2/1710:1712
Isolated non-canonical cWW pair
geometric
IL_4V88_472
NA
IL_5TGM_2221/2/1658:1661,
1/2/1706:1709
Tandem non-canonical cWW pairs
homologous
IL_4V88_473
NA
IL_5TGM_2231/2/1661:1665,
1/2/1702:1706
Triple sheared
geometric
IL_4V88_474
NA
IL_5TGM_2251/3/15:16,
1/3/63:65
Single bulged A
homologous
IL_5TBW_372
NA
IL_5TGM_2261/3/21:27,
1/3/53:58
Minor groove platform related
homologous
IL_5TBW_373
NA
IL_5TGM_2271/3/28:29,
1/3/49:52
Minor groove platform
geometric
IL_5TBW_374
NA
IL_5TGM_2281/3/29:30,
1/3/47:49
Single stack bend
homologous
IL_5TBW_375
NA
IL_5TGM_2291/3/32:36,
1/3/41:45
Symmetric double minor groove platform
homologous
IL_5TBW_376
NA
IL_5TGM_2301/3/72:80,
1/3/100:106
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_5TGM_2311/3/84:87,
1/3/94:96
Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_5TGM_2321/4/44:64,
1/4/96:100
No text annotation
geometric
IL_5TBW_144
NA
IL_5TGM_2331/4/64:66,
1/4/93:96
Isolated non-canonical cWW pair
geometric
IL_5TBW_145
NA
IL_5TGM_2341/4/68:69,
1/4/89:91
Single bulged U
homologous
IL_5TBW_146
NA
IL_5TGM_2351/4/69:73,
1/4/78:89
Kink-turn related
geometric
IL_5TBW_147
NA
IL_5TGM_2361/5/7:8,
1/8/150:152
Single bulged C
homologous
IL_8C3A_002
NA
IL_5TGM_2371/5/13:15,
1/8/144:145
Single bulged U
homologous
IL_8C3A_003
NA
IL_5TGM_2381/5/27:28,
1/5/56:58
Single stack bend
homologous
IL_5TBW_004
NA
IL_5TGM_2391/5/82:89,
1/5/97:103
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_006
NA
IL_5TGM_2401/5/123:124,
1/5/144:149
No text annotation
homologous
IL_5TBW_007
NA
IL_5TGM_2411/5/125:127,
1/5/141:143
Isolated non-canonical cWW pair
homologous
IL_8C3A_008
NA
IL_5TGM_5341/5/163:165,
1/5/257:258
Single stack bend
homologous
IL_8P9A_238
IL_90729.1
IL_5TGM_5351/5/169:170,
1/5/249:253
No text annotation
IL_5TGM_5361/5/171:172,
1/5/246:248
Single stack bend
geometric
IL_9DFE_091
IL_26793.1
IL_5TGM_5371/5/177:178,
1/5/238:241
No text annotation
IL_5TGM_2451/5/189:191,
1/5/204:205
Single bulged U
homologous
IL_5TBW_012
NA
IL_5TGM_2461/5/337:339,
1/8/25:26
Single bulged A
homologous
IL_5TBW_013
NA
IL_5TGM_2471/5/376:379,
1/5/390:403
No text annotation
homologous
IL_5TBW_014
NA
IL_5TGM_2481/5/404:410,
1/8/13:19
Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_5TGM_2491/5/429:431,
1/5/628:630
Isolated non-canonical cWW pair
homologous
IL_5TBW_016
NA
IL_5TGM_5381/5/436:495,
1/5/618:623
No text annotation
IL_5TGM_2511/5/512:513,
1/5/577:579
Single bulged A
homologous
IL_5TBW_018
NA
IL_5TGM_2521/5/517:525,
1/5/567:573
No text annotation
homologous
IL_5TBW_019
NA
IL_5TGM_2531/5/531:538,
1/5/553:561
No text annotation
homologous
IL_5TBW_020
NA
IL_5TGM_2541/5/668:670,
1/5/792:794
Isolated non-canonical cWW pair
homologous
IL_8C3A_023
NA
IL_5TGM_2551/5/680:684,
1/5/696:700
No text annotation
homologous
IL_5TBW_022
NA
IL_5TGM_2561/5/725:728,
1/5/741:745
UAA/GAN
homologous
IL_5TBW_023
NA
IL_5TGM_2571/5/752:753,
1/5/779:781
Single bulged A
homologous
IL_8C3A_026
NA
IL_5TGM_2581/5/755:756,
1/5/775:777
Single bulged U
homologous
IL_5TBW_025
NA
IL_5TGM_2591/5/758:763,
1/5/768:773
No text annotation
homologous
IL_5TBW_026
NA
IL_5TGM_2601/5/803:805,
1/5/938:940
Isolated non-canonical cWW pair
homologous
IL_5TBW_027
NA
IL_5TGM_2611/5/805:809,
1/5/931:938
tHW-tHW cross-strand stack
geometric
IL_5TBW_028
NA
IL_5TGM_2621/5/828:829,
1/5/895:897
Single bulged A
geometric
IL_5J7L_261
IL_31462.4
IL_5TGM_2631/5/833:834,
1/5/859:861
Single bulged G
geometric
IL_5TBW_029
NA
IL_5TGM_2641/5/834:838,
1/5/855:859
Triple sheared
homologous
IL_5TBW_030
NA
IL_5TGM_2651/5/869:872,
1/5/888:890
Major groove platform with extra cWW
homologous
IL_5TBW_031
NA
IL_5TGM_2661/5/873:875,
1/5/886:887
Single bulged U
homologous
IL_8C3A_035
NA
IL_5TGM_2671/5/907:909,
1/5/919:923
Multiple bulged bases
geometric
IL_5TBW_033
NA
IL_5TGM_2681/5/954:956,
1/5/965:967
Isolated non-canonical cWW pair
homologous
IL_5TBW_034
NA
IL_5TGM_2691/5/969:970,
1/5/1111:1113
Single stack bend
homologous
IL_5TBW_035
NA
IL_5TGM_2701/5/977:981,
1/5/1102:1104
180 degree turn
homologous
IL_5TBW_036
NA
IL_5TGM_2711/5/983:985,
1/5/1099:1100
Single bulged G
homologous
IL_5TBW_037
NA
IL_5TGM_2721/5/991:997,
1/5/1052:1058
7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5TBW_038
NA
IL_5TGM_2731/5/997:998,
1/5/1050:1052
Minor groove platform
homologous
IL_5TBW_039
NA
IL_5TGM_2741/5/999:1004,
1/5/1046:1049
C-loop
homologous
IL_5TBW_040
NA
IL_5TGM_4911/5/1006:1009,
1/5/1041:1044
No text annotation
homologous
IL_8P9A_269
IL_77658.1
IL_5TGM_2761/5/1009:1011,
1/5/1039:1041
Isolated non-canonical cWW pair
homologous
IL_5TBW_042
NA
IL_5TGM_4921/5/1013:1018,
1/5/1034:1037
No text annotation
homologous
IL_8C3A_046
NA
IL_5TGM_2781/5/1069:1071,
1/5/1087:1089
Isolated non-canonical cWW pair
homologous
IL_8C3A_047
NA
IL_5TGM_2791/5/1074:1076,
1/5/1083:1084
Single bulged A
geometric
IL_5TBW_045
NA
IL_5TGM_2801/5/1120:1122,
1/5/1136:1138
Isolated non-canonical cWW pair
homologous
IL_5TBW_046
NA
IL_5TGM_2811/5/1167:1171,
1/5/1328:1332
UAA/GAN
homologous
IL_5TBW_048
NA
IL_5TGM_2821/5/1173:1180,
1/5/1325:1326
SSU/LSU pseudoknot
homologous
IL_5TBW_049
NA
IL_5TGM_2831/5/1180:1182,
1/5/1324:1325
Single bulged U
geometric
IL_5TBW_050
NA
IL_5TGM_2841/5/1187:1194,
1/5/1314:1319
No text annotation
homologous
IL_5TBW_051
NA
IL_5TGM_2851/5/1194:1205,
1/5/1299:1314
No text annotation
geometric
IL_5TBW_052
NA
IL_5TGM_2861/5/1207:1209,
1/5/1296:1297
Single bulged U
homologous
IL_5TBW_053
NA
IL_5TGM_2871/5/1218:1226,
1/5/1283:1287
Kink-turn
homologous
IL_8C3A_057
NA
IL_5TGM_2881/5/1234:1238,
1/5/1250:1254
No text annotation
geometric
IL_4V9F_043
NA
IL_5TGM_2891/5/1262:1266,
1/5/1275:1277
Major groove platform with extra cWW
homologous
IL_8C3A_059
NA
IL_5TGM_2901/5/1376:1378,
1/5/1428:1431
Isolated cWS basepair
homologous
IL_5TBW_057
NA
IL_5TGM_2911/5/1385:1387,
1/5/1420:1421
Single bulged A
homologous
IL_5TBW_058
NA
IL_5TGM_2921/5/1388:1395,
1/5/1415:1419
Kink-turn
homologous
IL_5TBW_059
NA
IL_5TGM_2931/5/1398:1400,
1/5/1411:1412
Single bulged A
homologous
IL_5TBW_060
NA
IL_5TGM_2941/5/1444:1450,
1/5/2354:2359
7x6 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_061
NA
IL_5TGM_2951/5/1492:1495,
1/5/1835:1836
Major groove platform; stack outside cWW
geometric
IL_4V9F_050
IL_50694.6
IL_5TGM_5391/5/1501:1505,
1/5/1513:1515
C-loop
homologous
IL_8P9A_290
IL_63596.11
IL_5TGM_2971/5/1532:1536,
1/5/1585:1590
UAA/GAN
homologous
IL_5TBW_063
NA
IL_5TGM_2981/5/1618:1621,
1/5/1824:1826
No text annotation
homologous
IL_8C3A_070
NA
IL_5TGM_4941/5/1623:1624,
1/5/1819:1822
Major groove platform related
homologous
IL_8P9A_293
IL_48076.5
IL_5TGM_3001/5/1627:1631,
1/5/1811:1816
No text annotation
homologous
IL_8C3A_072
NA
IL_5TGM_3011/5/1645:1649,
1/5/1806:1810
Triple sheared
homologous
IL_5TBW_067
NA
IL_5TGM_3021/5/1661:1663,
1/5/1786:1788
Isolated non-canonical cWW pair
homologous
IL_5TBW_068
NA
IL_5TGM_3031/5/1669:1670,
1/5/1778:1780
Single bulged C
homologous
IL_5TBW_069
NA
IL_5TGM_3041/5/1670:1671,
1/5/1776:1778
Single stack bend
geometric
IL_5TBW_070
NA
IL_5TGM_3051/5/1694:1698,
1/5/1747:1752
No text annotation
homologous
IL_5TBW_071
NA
IL_5TGM_3061/5/1702:1707,
1/5/1737:1743
No text annotation
homologous
IL_8C3A_078
NA
IL_5TGM_4951/5/1711:1717,
1/5/1727:1733
No text annotation
homologous
IL_8P9A_301
IL_69543.2
IL_5TGM_3081/5/1883:1889,
1/5/2346:2349
No text annotation
homologous
IL_5TBW_074
NA
IL_5TGM_3091/5/1895:1897,
1/5/2338:2340
Isolated tWW turn
homologous
IL_5TBW_075
NA
IL_5TGM_3101/5/1898:1901,
1/5/2336:2337
Major groove platform; stack outside cWW
homologous
IL_5TBW_076
NA
IL_5TGM_4961/5/1898:1906,
1/5/2333:2337
No text annotation
homologous
IL_8P9A_305
IL_22854.4
IL_5TGM_3111/5/1901:1906,
1/5/2333:2336
No text annotation
homologous
IL_8C3A_083
NA
IL_5TGM_3121/5/1918:1923,
1/5/1928:1934
tSH-tSH-tHH-tHS
geometric
IL_4V9F_063
IL_47346.2
IL_5TGM_3131/5/1940:1942,
1/5/2106:2108
Isolated non-canonical cWW pair
homologous
IL_5TBW_079
NA
IL_5TGM_3141/5/1947:1948,
1/5/2098:2101
No text annotation
homologous
IL_5TBW_080
NA
IL_5TGM_3151/5/2128:2129,
1/5/2323:2325
Single bulged A
homologous
IL_8C3A_087
NA
IL_5TGM_3161/5/2156:2161,
1/5/2173:2180
Kink-turn related
homologous
IL_5TBW_083
NA
IL_5TGM_3171/5/2196:2199,
1/5/2245:2246
Major groove intercalation
homologous
IL_5TBW_084
NA
IL_5TGM_3181/5/2200:2201,
1/5/2241:2244
Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_5TGM_3191/5/2204:2206,
1/5/2237:2238
Single bulged U
homologous
IL_5TBW_086
NA
IL_5TGM_4971/5/2206:2210,
1/5/2235:2237
No text annotation
homologous
IL_8P9A_315
IL_36516.3
IL_5TGM_4981/5/2210:2217,
1/5/2228:2235
No text annotation
IL_5TGM_3201/5/2276:2277,
1/5/2307:2310
Bulged stacked bases
geometric
IL_5TBW_089
NA
IL_5TGM_3211/5/2277:2288,
1/5/2304:2307
No text annotation
homologous
IL_5TBW_090
NA
IL_5TGM_3221/5/2391:2394,
1/5/2986:2988
Major groove platform with extra pair
homologous
IL_5TBW_091
NA
IL_5TGM_3231/5/2396:2398,
1/5/2981:2984
Major groove platform with intercalation
homologous
IL_5TBW_092
NA
IL_5TGM_3241/5/2409:2411,
1/5/2811:2812
Single bulged U
homologous
IL_5TBW_093
NA
IL_5TGM_3251/5/2412:2413,
1/5/2807:2810
Minor groove platform
homologous
IL_5TBW_094
NA
IL_5TGM_3261/5/2423:2425,
1/5/2604:2607
Isolated tHS basepair with bulges
homologous
IL_5TBW_095
NA
IL_5TGM_3271/5/2520:2526,
1/5/2584:2587
No text annotation
homologous
IL_5TBW_096
NA
IL_5TGM_3281/5/2614:2615,
1/5/2625:2627
Single bulged A
homologous
IL_5TBW_098
NA
IL_5TGM_3301/5/2666:2668,
1/5/2686:2690
Isolated tHS basepair with bulges
homologous
IL_5TBW_099
NA
IL_5TGM_3311/5/2714:2716,
1/5/2740:2741
Single bulged A
geometric
IL_4V88_399
NA
IL_5TGM_3321/5/2718:2721,
1/5/2735:2738
Tandem non-canonical cWW pairs
homologous
IL_5TBW_100
NA
IL_5TGM_5401/5/2770:2773,
1/5/2787:2788
No text annotation
homologous
IL_8CRE_110
IL_79895.1
IL_5TGM_3341/5/2823:2824,
1/5/2865:2867
Major groove platform
geometric
IL_5TBW_102
NA
IL_5TGM_3351/5/2824:2826,
1/5/2863:2865
Isolated non-canonical cWW pair
geometric
IL_5TBW_103
NA
IL_5TGM_3361/5/2826:2828,
1/5/2862:2863
Major groove platform
homologous
IL_5TBW_104
NA
IL_5TGM_3371/5/2828:2830,
1/5/2858:2862
Major groove minor groove platform with extra cWW
geometric
IL_5TBW_105
NA
IL_5TGM_3381/5/2835:2839,
1/5/2849:2853
No text annotation
homologous
IL_8C3A_114
NA
IL_5TGM_3391/5/2876:2877,
1/5/2949:2951
Major groove platform
homologous
IL_8C3A_115
NA
IL_5TGM_3401/5/2879:2881,
1/5/2943:2947
Isolated non-canonical cWW with bulges
geometric
IL_5TBW_108
NA
IL_5TGM_3411/5/2881:2882,
1/5/2940:2943
Multiple bulged bases
homologous
IL_5TBW_109
NA
IL_5TGM_3421/5/2889:2891,
1/5/2912:2914
Isolated non-canonical cWW pair
geometric
IL_5TBW_110
NA
IL_5TGM_4991/5/2889:2892,
1/5/2909:2914
No text annotation
homologous
IL_8P9A_338
IL_07469.2
IL_5TGM_3431/5/2891:2892,
1/5/2909:2912
Major groove platform with intercalation
homologous
IL_5TBW_111
NA
IL_5TGM_3441/5/2918:2920,
1/5/2926:2928
Isolated non-canonical cWW pair
geometric
IL_5TBW_112
NA
IL_5TGM_3451/5/2960:2961,
1/5/2970:2972
Single bulged A
geometric
IL_7RQB_101
NA
IL_5TGM_3461/5/3004:3007,
1/5/3139:3144
Double sheared
homologous
IL_8C3A_123
NA
IL_5TGM_3471/5/3012:3014,
1/5/3040:3042
Isolated non-canonical cWW pair
homologous
IL_8C3A_124
NA
IL_5TGM_3481/5/3018:3025,
1/5/3030:3036
8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_5TGM_3491/5/3047:3051,
1/5/3091:3094
Major groove minor groove platform with tHH
homologous
IL_5TBW_117
NA
IL_5TGM_3501/5/3054:3059,
1/5/3084:3088
UAA/GAN related
homologous
IL_5TBW_118
NA
IL_5TGM_3511/5/3063:3064,
1/5/3077:3080
No text annotation
homologous
IL_8C3A_128
NA
IL_5TGM_3521/5/3103:3107,
1/5/3127:3131
UAA/GAN
homologous
IL_5TBW_120
NA
IL_5TGM_5001/5/3164:3166,
1/5/3284:3286
Isolated non-canonical cWW pair
homologous
IL_8C3A_130
NA
IL_5TGM_5411/5/3168:3170,
1/5/3280:3282
Isolated non-canonical cWW pair
homologous
IL_8P9A_350
IL_28037.1
IL_5TGM_3551/5/3177:3179,
1/5/3210:3211
Single bulged A
geometric
IL_5TBW_123
NA
IL_5TGM_3561/5/3179:3188,
1/5/3204:3210
No text annotation
homologous
IL_5TBW_124
NA
IL_5TGM_3571/5/3225:3229,
1/5/3258:3260
No text annotation
homologous
IL_8C3A_133
NA
IL_5TGM_3581/5/3233:3235,
1/5/3252:3254
Isolated non-canonical cWW pair
geometric
IL_5TBW_042
NA
IL_5TGM_3591/5/3235:3238,
1/5/3249:3252
Tandem non-canonical cWW pairs
homologous
IL_5TBW_128
NA
IL_5TGM_3601/5/3300:3303,
1/5/3311:3314
Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA
IL_5TGM_3611/5/3318:3320,
1/5/3387:3388
Single bulged U
homologous
IL_8C3A_136
NA
IL_5TGM_3621/5/3324:3325,
1/5/3381:3383
Single bulged U
homologous
IL_5TBW_131
NA
IL_5TGM_3631/5/3328:3330,
1/5/3373:3378
Isolated non-canonical cWW pair
homologous
IL_5TBW_132
NA
IL_5TGM_3641/5/3332:3337,
1/5/3367:3371
No text annotation
homologous
IL_8C3A_139
NA
IL_5TGM_3651/5/3340:3345,
1/5/3360:3364
No text annotation
IL_5TGM_3661/5/3349:3350,
1/5/3353:3356
Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_5TGM_3671/6/24:26,
1/6/600:601
Single bulged C
homologous
IL_4V88_384
NA
IL_5TGM_3681/6/35:37,
1/6/471:473
Isolated non-canonical cWW pair
homologous
IL_4V88_385
NA
IL_5TGM_3691/6/37:41,
1/6/466:471
Triple sheared related
geometric
IL_4V88_386
NA
IL_5TGM_3701/6/42:48,
1/6/431:433
No text annotation
geometric
IL_4V88_387
NA
IL_5TGM_3711/6/50:52,
1/6/428:429
Minor groove platform
homologous
IL_4V88_388
NA
IL_5TGM_3721/6/58:63,
1/6/87:89
No text annotation
homologous
IL_4V88_389
NA
IL_5TGM_3731/6/64:69,
1/6/82:86
No text annotation
homologous
IL_4V88_390
NA
IL_5TGM_3741/6/109:112,
1/6/302:305
Tandem non-canonical cWW pairs
homologous
IL_4V88_391
NA
IL_5TGM_3751/6/113:116,
1/6/300:301
Multiple bulged bases
homologous
IL_4V88_392
NA
IL_5TGM_5011/6/117:122,
1/6/295:299
No text annotation
homologous
IL_8P9A_382
IL_29223.1
IL_5TGM_3771/6/143:149,
1/6/165:172
tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA
IL_5TGM_3781/6/150:152,
1/6/162:164
Isolated non-canonical cWW contact
homologous
IL_4V88_395
NA
IL_5TGM_3791/6/186:189,
1/6/196:199
Double sheared
geometric
IL_4V88_396
NA
IL_5TGM_3801/6/204:206,
1/6/259:263
Major groove platform with extra cWW
geometric
IL_4V88_397
NA
IL_5TGM_3811/6/206:208,
1/6/257:259
Isolated non-canonical cWW pair
homologous
IL_4V88_398
NA
IL_5TGM_5031/6/213:243,
1/6/250:252
No text annotation
IL_5TGM_3821/6/265:267,
1/6/288:289
Single bulged A
homologous
IL_4V88_399
NA
IL_5TGM_3831/6/270:273,
1/6/283:285
No text annotation
homologous
IL_4V88_400
NA
IL_5TGM_3841/6/275:276,
1/6/279:281
Single bulged U
homologous
IL_4V88_401
NA
IL_5TGM_3851/6/311:316,
1/6/348:355
Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_5TGM_3861/6/318:323,
1/6/345:346
No text annotation
homologous
IL_4V88_403
NA
IL_5TGM_3871/6/363:365,
1/6/376:381
No text annotation
homologous
IL_4V88_404
NA
IL_5TGM_3881/6/389:391,
1/6/406:408
Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_5TGM_5041/6/411:413,
1/6/420:422
No text annotation
homologous
IL_8P9A_395
IL_42997.2
IL_5TGM_3901/6/439:441,
1/6/463:464
Single bulged U
geometric
IL_4V88_407
NA
IL_5TGM_5421/6/443:447,
1/6/460:461
No text annotation
homologous
IL_8P9A_397
IL_03109.2
IL_5TGM_5431/6/447:448,
1/6/458:460
Single bulged G
homologous
IL_8P9A_398
IL_00225.12
IL_5TGM_3921/6/481:482,
1/6/505:507
Single bulged A
homologous
IL_4V88_409
NA
IL_5TGM_5441/6/517:518,
1/6/533:535
No text annotation
homologous
IL_8CRE_419
IL_51454.1
IL_5TGM_3941/6/518:520,
1/6/532:533
Minor groove platform
homologous
IL_4V88_412
NA
IL_5TGM_3951/6/550:557,
1/6/587:588
SSU/LSU pseudoknot
homologous
IL_4V88_413
NA
IL_5TGM_3961/6/557:559,
1/6/586:587
Single bulged U
geometric
IL_4V88_414
NA
IL_5TGM_3971/6/562:568,
1/6/575:583
No text annotation
homologous
IL_8P9A_404
IL_54177.3
IL_5TGM_3981/6/616:622,
1/6/1104:1105
No text annotation
homologous
IL_4V88_416
NA
IL_5TGM_3991/6/624:626,
1/6/973:975
Isolated non-canonical cWW pair
homologous
IL_4V88_417
NA
IL_5TGM_4001/6/627:631,
1/6/968:972
tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_5TGM_4011/6/646:648,
1/6/686:688
Isolated non-canonical cWW pair
homologous
IL_4V88_419
NA
IL_5TGM_4021/6/649:653,
1/6/677:685
No text annotation
IL_5TGM_4031/6/703:708,
1/6/730:735
Triple sheared related
homologous
IL_4V88_421
NA
IL_5TGM_5451/6/709:712,
1/6/726:729
No text annotation
homologous
IL_8P9A_411
IL_77658.1
IL_5TGM_4051/6/746:747,
1/6/802:805
Major groove minor groove platform; mini C-loop
homologous
IL_4V88_423
NA
IL_5TGM_5061/6/746:748,
1/6/801:805
No text annotation
geometric
IL_6CZR_361
NA
IL_5TGM_4061/6/748:750,
1/6/799:801
Isolated non-canonical cWW pair
homologous
IL_4V88_424
NA
IL_5TGM_4071/6/751:759,
1/6/791:798
No text annotation
homologous
IL_4V88_425
NA
IL_5TGM_4081/6/819:822,
1/6/850:852
Isolated non-canonical cWW pair
homologous
IL_4V88_426
NA
IL_5TGM_4101/6/865:866,
1/6/962:965
Major groove platform; stack outside cWW
geometric
IL_4V88_428
NA
IL_5TGM_4111/6/868:870,
1/6/957:960
Single bulged G, near cWW
geometric
IL_6CZR_128
NA
IL_5TGM_5461/6/871:873,
1/6/955:956
Single stack bend
geometric
IL_4V9F_081
IL_26793.1
IL_5TGM_5471/6/873:874,
1/6/953:955
Single stack bend
geometric
IL_5J7L_269
IL_26793.1
IL_5TGM_4131/6/874:878,
1/6/950:953
Tandem non-canonical cWW pairs
homologous
IL_4V88_431
NA
IL_5TGM_4141/6/885:888,
1/6/924:927
Tandem non-canonical cWW pairs
homologous
IL_4V88_432
NA
IL_5TGM_4151/6/893:899,
1/6/910:919
Kink-turn related
homologous
IL_8C3A_440
NA
IL_5TGM_4161/6/985:990,
1/6/1014:1016
Other IL
homologous
IL_4V88_435
NA
IL_5TGM_4171/6/990:994,
1/6/1010:1014
tSH-tHW-tHS
geometric
IL_4V88_436
NA
IL_5TGM_4181/6/1034:1036,
1/6/1095:1101
No text annotation
homologous
IL_4V88_437
NA
IL_5TGM_4191/6/1041:1044,
1/6/1074:1077
Tandem non-canonical cWW pairs
homologous
IL_4V88_438
NA
IL_5TGM_4201/6/1051:1053,
1/6/1066:1067
Single bulged U
homologous
IL_4V88_439
NA
IL_5TGM_4211/6/1111:1118,
1/6/1129:1134
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_5TGM_4221/6/1146:1147,
1/6/1630:1632
Single bulged A
homologous
IL_8P9A_429
IL_31462.4
IL_5TGM_5091/6/1146:1148,
1/6/1629:1632
Isolated non-canonical cWW with bulges
geometric
IL_4V9F_097
IL_08069.1
IL_5TGM_4231/6/1149:1151,
1/6/1627:1628
Single bulged G
homologous
IL_4V88_442
NA
IL_5TGM_4241/6/1157:1160,
1/6/1617:1621
C-loop
homologous
IL_4V88_443
NA
IL_5TGM_4251/6/1173:1175,
1/6/1464:1466
Isolated non-canonical cWW pair
homologous
IL_4V88_444
NA
IL_5TGM_4261/6/1178:1179,
1/6/1459:1461
Minor groove platform
homologous
IL_4V88_445
NA
IL_5TGM_4271/6/1213:1215,
1/6/1448:1450
Isolated non-canonical cWW pair
homologous
IL_4V88_446
NA
IL_5TGM_5481/6/1224:1233,
1/6/1252:1259
No text annotation
homologous
IL_8P9A_470
IL_28304.1
IL_5TGM_4281/6/1234:1236,
1/6/1249:1251
No text annotation
homologous
IL_4V88_448
NA
IL_5TGM_4291/6/1268:1270,
1/6/1440:1441
Single bulged U
homologous
IL_4V88_449
NA
IL_5TGM_4301/6/1272:1276,
1/6/1436:1438
Isolated cWS basepair
geometric
IL_4V88_450
NA
IL_5TGM_5111/6/1272:1278,
1/6/1430:1438
No text annotation
homologous
IL_8P9A_439
IL_86012.1
IL_5TGM_4311/6/1276:1278,
1/6/1430:1436
Minor groove platform with extra cWW
homologous
IL_4V88_451
NA
IL_5TGM_4321/6/1280:1281,
1/6/1426:1428
Single bulged A
homologous
IL_4V88_452
NA
IL_5TGM_4331/6/1290:1292,
1/6/1323:1325
Isolated cWH basepair
homologous
IL_4V88_453
NA
IL_5TGM_4341/6/1306:1308,
1/6/1317:1318
Minor groove platform
homologous
IL_4V88_454
NA
IL_5TGM_4351/6/1339:1342,
1/6/1383:1385
Isolated non-canonical cWW pair
homologous
IL_4V88_455
NA
IL_5TGM_4361/6/1345:1348,
1/6/1377:1380
Minor groove platform
homologous
IL_4V88_456
NA
IL_5TGM_5131/6/1352:1354,
1/6/1369:1373
Isolated non-canonical cWW pair
geometric
IL_5B2P_002
IL_28037.1
IL_5TGM_4381/6/1389:1391,
1/6/1407:1412
Major groove platform; stack outside cWW
homologous
IL_4V88_458
NA
IL_5TGM_4391/6/1480:1487,
1/6/1519:1527
No text annotation
homologous
IL_4V88_459
NA
IL_5TGM_4401/6/1488:1494,
1/6/1513:1518
No text annotation
homologous
IL_8P9A_449
IL_22564.1
IL_5TGM_4411/6/1495:1498,
1/6/1509:1512
Tandem non-canonical cWW pairs
homologous
IL_4V88_461
NA
IL_5TGM_4421/6/1540:1545,
1/6/1566:1571
No text annotation
homologous
IL_4V88_462
NA
IL_5TGM_4431/6/1636:1638,
1/6/1764:1767
No text annotation
homologous
IL_4V88_463
NA
IL_5TGM_4441/6/1638:1641,
1/6/1760:1764
No text annotation
geometric
IL_4V88_464
NA
IL_5TGM_4451/6/1642:1644,
1/6/1757:1759
Isolated non-canonical cWW pair
homologous
IL_4V88_465
NA
IL_5TGM_4461/6/1644:1647,
1/6/1753:1757
Non canonical cWW and near pair
geometric
IL_4V88_466
NA
IL_5TGM_4471/6/1650:1652,
1/6/1748:1750
Isolated non-canonical cWW pair
homologous
IL_4V88_467
NA
IL_5TGM_4481/6/1653:1656,
1/6/1744:1747
Double sheared
homologous
IL_4V88_468
NA
IL_5TGM_4491/6/1656:1658,
1/6/1743:1744
Single bulged U
geometric
IL_4V88_469
NA
IL_5TGM_4501/6/1665:1667,
1/6/1734:1736
Isolated non-canonical cWW pair
homologous
IL_4V88_470
NA
IL_5TGM_4511/6/1669:1672,
1/6/1729:1732
Double sheared
geometric
IL_4V88_471
NA
IL_5TGM_4521/6/1672:1674,
1/6/1727:1729
Isolated non-canonical cWW pair
homologous
IL_4V88_472
NA
IL_5TGM_4531/6/1675:1678,
1/6/1723:1726
Tandem non-canonical cWW pairs
homologous
IL_4V88_473
NA
IL_5TGM_4541/6/1678:1682,
1/6/1719:1723
Triple sheared
geometric
IL_4V88_474
NA
IL_5TGM_4551/6/1688:1690,
1/6/1711:1713
Other IL
geometric
IL_4V88_476
NA
IL_5TGM_5141/7/15:16,
1/7/63:65
Single bulged A
homologous
IL_8P9A_364
IL_31462.4
IL_5TGM_4571/7/21:26,
1/7/57:58
No text annotation
IL_5TGM_5151/7/21:27,
1/7/53:58
No text annotation
homologous
IL_8P9A_365
IL_18487.1
IL_5TGM_4581/7/26:27,
1/7/53:57
C-loop
geometric
IL_4LFB_015
IL_03109.2
IL_5TGM_4591/7/28:29,
1/7/49:52
Minor groove platform
homologous
IL_5TBW_374
NA
IL_5TGM_4601/7/29:30,
1/7/47:49
Single stack bend
geometric
IL_5TBW_375
NA
IL_5TGM_4611/7/32:36,
1/7/41:45
Symmetric double minor groove platform
geometric
IL_5TBW_376
NA
IL_5TGM_4621/7/72:80,
1/7/100:106
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_5TGM_4631/7/84:87,
1/7/94:96
Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_5TGM_4641/8/44:64,
1/8/96:100
No text annotation
geometric
IL_5TBW_144
NA
IL_5TGM_4651/8/64:66,
1/8/93:96
Isolated non-canonical cWW pair
geometric
IL_5TBW_145
NA
IL_5TGM_4661/8/68:69,
1/8/89:91
Single bulged U
geometric
IL_5TBW_146
NA

Problematic loops

#loop idProblemSequence
IL_5TGM_001No text annotation
IL_5TGM_467No text annotation
IL_5TGM_009Other IL
IL_5TGM_011Major groove platform with extra pair
IL_5TGM_041No text annotation
IL_5TGM_043Other IL
IL_5TGM_047Isolated cWS basepair
IL_5TGM_055No text annotation
IL_5TGM_062No text annotation
IL_5TGM_472No text annotation
IL_5TGM_473No text annotation
IL_5TGM_065Multiple bulged bases with near cWW
IL_5TGM_081No text annotation
IL_5TGM_475No text annotation
IL_5TGM_098Multiple bulged bases
IL_5TGM_477No text annotation
IL_5TGM_121No text annotation
IL_5TGM_122No text annotation
IL_5TGM_478Isolated non-canonical cWW pair
IL_5TGM_144Triple non-canonical cWW pairs
IL_5TGM_161C-loop with extra cWW pair
IL_5TGM_162No text annotation
IL_5TGM_166No text annotation
IL_5TGM_480Tandem non-canonical cWW pairs
IL_5TGM_171Minor groove platform with extra cWW
IL_5TGM_173No text annotation
IL_5TGM_481Partly complementary
IL_5TGM_195No text annotation
IL_5TGM_482No text annotation
IL_5TGM_483No text annotation
IL_5TGM_205No text annotation
IL_5TGM_208No text annotation
IL_5TGM_485No text annotation
IL_5TGM_211No text annotation
IL_5TGM_224No text annotation
IL_5TGM_242Other IL
IL_5TGM_487No text annotation
IL_5TGM_243No text annotation
IL_5TGM_488No text annotation
IL_5TGM_244Major groove platform with extra pair
IL_5TGM_489No text annotation
IL_5TGM_250No text annotation
IL_5TGM_490No text annotation
IL_5TGM_275No text annotation
IL_5TGM_277No text annotation
IL_5TGM_493No text annotation
IL_5TGM_296No text annotation
IL_5TGM_299No text annotation
IL_5TGM_307No text annotation
IL_5TGM_329Multiple bulged bases
IL_5TGM_333No text annotation
IL_5TGM_353No text annotation
IL_5TGM_354Tandem non-canonical cWW pairs
IL_5TGM_376No text annotation
IL_5TGM_502Triple sheared
IL_5TGM_389Tandem non-canonical cWW pairs
IL_5TGM_391C-loop with extra cWW pair
IL_5TGM_393Minor groove platform with extra cWW
IL_5TGM_505No text annotation
IL_5TGM_404No text annotation
IL_5TGM_507No text annotation
IL_5TGM_409Isolated cWH basepair
IL_5TGM_508Triple non-canonical cWW pairs
IL_5TGM_412Tandem non-canonical cWW pairs
IL_5TGM_510No text annotation
IL_5TGM_512Tandem non-canonical cWW pairs
IL_5TGM_437No text annotation
IL_5TGM_456Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5TGM_0011/1/113:123,
1/1/149:158,
1/1/263:267
No text annotation
homologous
J3_8P9A_042
J3_19664.1
J3_5TGM_0591/1/113:124,
1/1/144:158,
1/1/263:267
No text annotation
J3_5TGM_0601/1/185:189,
1/1/205:214,
1/1/226:231
No text annotation
homologous
J3_8P9A_044
J3_75408.1
J3_5TGM_0611/1/340:356,
1/1/363:368,
1/4/21:24
No text annotation
homologous
J3_8P9A_045
J3_30040.2
J3_5TGM_0021/1/369:376,
1/1/403:404,
1/4/19:20
No text annotation
homologous
J3_5TBW_002
NA
J3_5TGM_0621/1/369:379,
1/1/390:404,
1/4/19:20
No text annotation
homologous
J3_8P9A_047
J3_92134.2
J3_5TGM_0031/1/502:503,
1/1/588:597,
1/1/606:611
No text annotation
homologous
J3_5TBW_003
NA
J3_5TGM_0041/1/814:820,
1/1/905:907,
1/1/923:926
No text annotation
homologous
J3_5TBW_004
NA
J3_5TGM_0051/1/828:831,
1/1/863:867,
1/1/892:897
No text annotation
homologous
J3_5TBW_005
NA
J3_5TGM_0061/1/986:987,
1/1/1062:1066,
1/1/1092:1098
No text annotation
homologous
J3_5TBW_006
NA
J3_5TGM_0071/1/1230:1232,
1/1/1256:1262,
1/1/1277:1279
No text annotation
homologous
J3_5TBW_007
NA
J3_5TGM_0081/1/1479:1485,
1/1/1857:1859,
1/1/1871:1874
No text annotation
homologous
J3_5TBW_008
NA
J3_5TGM_0091/1/1488:1491,
1/1/1837:1843,
1/1/1852:1854
No text annotation
homologous
J3_5TBW_009
NA
J3_5TGM_0651/1/1526:1531,
1/1/1591:1595,
1/1/1612:1613
No text annotation
homologous
J3_8P9A_055
J3_31965.2
J3_5TGM_0661/1/1537:1542,
1/1/1551:1566,
1/1/1572:1584
No text annotation
J3_5TGM_0911/1/1631:1632,
1/1/1641:1645,
1/1/1810:1811
No text annotation
homologous
J3_8P9A_087
J3_75962.2
J3_5TGM_0671/1/1654:1658,
1/1/1791:1792,
1/1/1796:1801
No text annotation
homologous
J3_8P9A_058
J3_12393.2
J3_5TGM_0111/1/2432:2435,
1/1/2512:2517,
1/1/2590:2597
No text annotation
homologous
J3_5TBW_012
NA
J3_5TGM_0681/1/2529:2533,
1/1/2546:2563,
1/1/2578:2581
No text annotation
J3_5TGM_0691/1/2651:2653,
1/1/2754:2765,
1/1/2793:2798
No text annotation
homologous
J3_8C3A_056
NA
J3_5TGM_0121/1/2664:2666,
1/1/2690:2692,
1/1/2701:2706
No text annotation
homologous
J3_5TBW_013
NA
J3_5TGM_0921/1/2886:2889,
1/1/2914:2916,
1/1/2930:2936
No text annotation
homologous
J3_8P9A_063
J3_62630.1
J3_5TGM_0701/1/3171:3176,
1/1/3212:3220,
1/1/3265:3279
No text annotation
homologous
J3_8P9A_064
J3_03190.1
J3_5TGM_0141/1/3298:3300,
1/1/3314:3318,
1/1/3388:3390
No text annotation
homologous
J3_5TBW_015
NA
J3_5TGM_0711/1/3298:3300,
1/1/3314:3320,
1/1/3387:3390
No text annotation
geometric
J3_5TBW_069
NA
J3_5TGM_0151/2/41:42,
1/2/433:439,
1/2/464:466
No text annotation
geometric
J3_4V88_078
NA
J3_5TGM_0721/2/41:48,
1/2/431:439,
1/2/464:466
No text annotation
homologous
J3_8P9A_069
J3_46317.3
J3_5TGM_0731/2/213:228,
1/2/237:243,
1/2/250:252
No text annotation
J3_5TGM_0931/2/633:635,
1/2/844:848,
1/2/948:949
No text annotation
geometric
J3_8P9A_071
J3_56052.4
J3_5TGM_0941/2/633:635,
1/2/844:849,
1/2/945:949
No text annotation
homologous
J3_8P9A_072
J3_17385.3
J3_5TGM_0171/2/743:746,
1/2/756:758,
1/2/768:773
No text annotation
homologous
J3_4V88_032
NA
J3_5TGM_0181/2/864:867,
1/2/911:919,
1/2/926:930
No text annotation
homologous
J3_4V88_033
NA
J3_5TGM_0191/2/1020:1022,
1/2/1062:1066,
1/2/1073:1077
No text annotation
homologous
J3_4V88_034
NA
J3_5TGM_0201/2/1144:1147,
1/2/1564:1570,
1/2/1592:1599
No text annotation
homologous
J3_4V88_035
NA
J3_5TGM_0211/2/1151:1154,
1/2/1451:1453,
1/2/1557:1560
No text annotation
homologous
J3_4V88_036
NA
J3_5TGM_0221/2/1163:1170,
1/2/1181:1192,
1/2/1437:1441
No text annotation
homologous
J3_8C3A_040
NA
J3_5TGM_0231/2/1198:1203,
1/2/1246:1250,
1/2/1425:1431
No text annotation
homologous
J3_4V88_038
NA
J3_5TGM_0241/2/1266:1271,
1/2/1310:1315,
1/2/1402:1407
No text annotation
homologous
J3_4V88_039
NA
J3_5TGM_0251/2/1276:1277,
1/2/1286:1289,
1/2/1301:1305
No text annotation
homologous
J3_8C3A_085
NA
J3_5TGM_0261/2/1319:1321,
1/2/1369:1372,
1/2/1395:1398
No text annotation
homologous
J3_4V88_040
NA
J3_5TGM_0751/2/1319:1321,
1/2/1369:1374,
1/2/1390:1398
No text annotation
homologous
J3_8P9A_083
J3_88233.1
J3_5TGM_0271/2/1453:1457,
1/2/1516:1523,
1/2/1554:1557
No text annotation
homologous
J3_4V88_041
NA
J3_5TGM_0281/3/9:14,
1/3/66:67,
1/3/111:112
No text annotation
homologous
J3_5TBW_045
NA
J3_5TGM_0761/4/44:45,
1/4/58:64,
1/4/96:100
No text annotation
homologous
J3_8P4V_024
NA
J3_5TGM_0291/5/113:123,
1/5/149:158,
1/5/263:267
No text annotation
homologous
J3_8P9A_042
J3_19664.1
J3_5TGM_0771/5/113:124,
1/5/144:158,
1/5/263:267
No text annotation
J3_5TGM_0781/5/340:356,
1/5/363:368,
1/8/21:24
No text annotation
homologous
J3_8P9A_045
J3_30040.2
J3_5TGM_0301/5/369:376,
1/5/403:404,
1/8/19:20
No text annotation
homologous
J3_5TBW_002
NA
J3_5TGM_0791/5/369:379,
1/5/390:404,
1/8/19:20
No text annotation
homologous
J3_8P9A_047
J3_92134.2
J3_5TGM_0311/5/502:503,
1/5/588:597,
1/5/606:611
No text annotation
homologous
J3_5TBW_003
NA
J3_5TGM_0801/5/814:820,
1/5/905:907,
1/5/923:926
No text annotation
homologous
J3_8P9A_049
J3_64189.2
J3_5TGM_0331/5/829:831,
1/5/863:867,
1/5/892:895
No text annotation
homologous
J3_8C3A_004
NA
J3_5TGM_0341/5/986:987,
1/5/1062:1066,
1/5/1092:1098
No text annotation
homologous
J3_8P9A_051
J3_09667.1
J3_5TGM_0351/5/1230:1232,
1/5/1256:1262,
1/5/1277:1279
No text annotation
homologous
J3_8C3A_005
NA
J3_5TGM_0361/5/1479:1485,
1/5/1857:1859,
1/5/1871:1874
No text annotation
homologous
J3_5TBW_008
NA
J3_5TGM_0371/5/1488:1491,
1/5/1837:1843,
1/5/1852:1854
No text annotation
homologous
J3_5TBW_009
NA
J3_5TGM_0381/5/1526:1531,
1/5/1591:1595,
1/5/1612:1613
No text annotation
homologous
J3_5TBW_010
NA
J3_5TGM_0811/5/1537:1542,
1/5/1551:1560,
1/5/1579:1584
No text annotation
J3_5TGM_0391/5/1631:1633,
1/5/1640:1645,
1/5/1810:1811
No text annotation
homologous
J3_5TBW_011
NA
J3_5TGM_0821/5/1654:1658,
1/5/1791:1792,
1/5/1796:1801
No text annotation
homologous
J3_8P9A_058
J3_12393.2
J3_5TGM_0831/5/2432:2435,
1/5/2512:2516,
1/5/2591:2597
No text annotation
geometric
J3_4V9F_007
J3_97609.1
J3_5TGM_0411/5/2529:2532,
1/5/2547:2563,
1/5/2578:2581
No text annotation
homologous
J3_8P9A_060
J3_28639.1
J3_5TGM_0841/5/2651:2653,
1/5/2754:2765,
1/5/2793:2798
No text annotation
homologous
J3_8P9A_061
J3_20992.1
J3_5TGM_0421/5/2664:2666,
1/5/2690:2692,
1/5/2701:2706
No text annotation
homologous
J3_5TBW_013
NA
J3_5TGM_0851/5/2886:2889,
1/5/2914:2916,
1/5/2930:2936
No text annotation
homologous
J3_8P9A_063
J3_62630.1
J3_5TGM_0861/5/3171:3176,
1/5/3212:3220,
1/5/3265:3279
No text annotation
homologous
J3_8P9A_064
J3_03190.1
J3_5TGM_0441/5/3298:3300,
1/5/3314:3318,
1/5/3388:3390
No text annotation
homologous
J3_5TBW_015
NA
J3_5TGM_0451/6/41:42,
1/6/433:439,
1/6/464:466
No text annotation
homologous
J3_8P9A_068
J3_67856.3
J3_5TGM_0461/6/633:635,
1/6/861:865,
1/6/965:966
No text annotation
geometric
J3_4V88_080
NA
J3_5TGM_0871/6/633:635,
1/6/861:866,
1/6/962:966
No text annotation
homologous
J3_8P9A_072
J3_17385.3
J3_5TGM_0471/6/760:763,
1/6/773:775,
1/6/785:790
No text annotation
homologous
J3_4V88_032
NA
J3_5TGM_0481/6/881:884,
1/6/928:936,
1/6/943:947
No text annotation
homologous
J3_4V88_033
NA
J3_5TGM_0491/6/1037:1039,
1/6/1079:1083,
1/6/1090:1094
No text annotation
homologous
J3_4V88_034
NA
J3_5TGM_0501/6/1161:1164,
1/6/1581:1587,
1/6/1609:1616
No text annotation
homologous
J3_4V88_035
NA
J3_5TGM_0511/6/1168:1171,
1/6/1468:1470,
1/6/1574:1577
No text annotation
homologous
J3_4V88_036
NA
J3_5TGM_0521/6/1180:1187,
1/6/1198:1209,
1/6/1454:1458
No text annotation
geometric
J3_4V88_037
NA
J3_5TGM_0531/6/1215:1220,
1/6/1263:1267,
1/6/1442:1448
No text annotation
homologous
J3_4V88_038
NA
J3_5TGM_0541/6/1283:1288,
1/6/1327:1332,
1/6/1419:1424
No text annotation
homologous
J3_4V88_039
NA
J3_5TGM_0951/6/1293:1294,
1/6/1303:1306,
1/6/1318:1322
No text annotation
homologous
J3_8P9A_081
J3_76043.3
J3_5TGM_0561/6/1336:1338,
1/6/1386:1389,
1/6/1412:1415
No text annotation
homologous
J3_4V88_040
NA
J3_5TGM_0891/6/1336:1338,
1/6/1386:1391,
1/6/1407:1415
No text annotation
homologous
J3_8P9A_083
J3_88233.1
J3_5TGM_0571/6/1470:1474,
1/6/1533:1540,
1/6/1571:1574
No text annotation
homologous
J3_4V88_041
NA
J3_5TGM_0581/7/9:14,
1/7/66:67,
1/7/111:112
No text annotation
homologous
J3_5TBW_045
NA
J3_5TGM_0901/8/44:45,
1/8/58:66,
1/8/93:100
No text annotation
J4_5TGM_0011/1/112:113,
1/1/267:272,
1/1/293:299,
1/1/316:319
No text annotation
homologous
J4_8P9A_012
J4_45801.6
J4_5TGM_0021/1/185:189,
1/1/205:208,
1/1/212:214,
1/1/226:231
No text annotation
homologous
J4_8P9A_013
J4_12410.1
J4_5TGM_0031/1/1451:1457,
1/1/1475:1476,
1/1/1877:1880,
1/1/2352:2353
No text annotation
homologous
J4_8P9A_014
J4_87855.1
J4_5TGM_0041/1/1492:1496,
1/1/1520:1525,
1/1/1614:1615,
1/1/1829:1836
No text annotation
homologous
J4_8P9A_015
J4_69051.6
J4_5TGM_0051/1/1674:1675,
1/1/1693:1694,
1/1/1752:1753,
1/1/1772:1773
No text annotation
homologous
J4_8P9A_016
J4_24280.2
J4_5TGM_0061/1/2130:2134,
1/1/2146:2150,
1/1/2186:2190,
1/1/2317:2322
No text annotation
homologous
J4_8C3A_006
NA
J4_5TGM_0071/1/2192:2194,
1/1/2248:2249,
1/1/2267:2276,
1/1/2310:2315
No text annotation
homologous
J4_8C3A_007
NA
J4_5TGM_0081/1/2654:2658,
1/1/2712:2716,
1/1/2740:2742,
1/1/2751:2753
No text annotation
homologous
J4_8P9A_019
J4_04930.6
J4_5TGM_0091/1/3010:3012,
1/1/3042:3043,
1/1/3098:3100,
1/1/3134:3136
No text annotation
homologous
J4_8P9A_020
J4_65356.1
J4_5TGM_0101/2/99:107,
1/2/307:309,
1/2/357:361,
1/2/383:384
No text annotation
homologous
J4_8P9A_021
J4_15241.1
J4_5TGM_0111/2/622:624,
1/2/958:963,
1/2/1004:1015,
1/2/1086:1087
No text annotation
homologous
J4_8P9A_022
J4_61885.5
J4_5TGM_0121/5/112:113,
1/5/267:272,
1/5/293:299,
1/5/316:319
No text annotation
homologous
J4_8P9A_012
J4_45801.6
J4_5TGM_0131/5/185:189,
1/5/205:208,
1/5/212:214,
1/5/226:231
No text annotation
homologous
J4_8P9A_013
J4_12410.1
J4_5TGM_0141/5/1451:1457,
1/5/1475:1476,
1/5/1877:1880,
1/5/2352:2353
No text annotation
homologous
J4_8P9A_014
J4_87855.1
J4_5TGM_0151/5/1492:1496,
1/5/1520:1525,
1/5/1614:1615,
1/5/1829:1836
No text annotation
J4_5TGM_0161/5/1495:1496,
1/5/1520:1525,
1/5/1614:1615,
1/5/1829:1835
No text annotation
J4_5TGM_0171/5/1674:1675,
1/5/1693:1694,
1/5/1752:1753,
1/5/1772:1773
No text annotation
homologous
J4_8P9A_016
J4_24280.2
J4_5TGM_0181/5/2130:2134,
1/5/2146:2150,
1/5/2186:2190,
1/5/2317:2322
No text annotation
homologous
J4_8P9A_017
J4_07509.2
J4_5TGM_0191/5/2192:2194,
1/5/2248:2249,
1/5/2267:2276,
1/5/2310:2315
No text annotation
homologous
J4_8P9A_018
J4_93343.1
J4_5TGM_0201/5/2654:2658,
1/5/2712:2714,
1/5/2741:2742,
1/5/2751:2753
No text annotation
J4_5TGM_0211/5/2654:2658,
1/5/2712:2716,
1/5/2740:2742,
1/5/2751:2753
No text annotation
homologous
J4_8P9A_019
J4_04930.6
J4_5TGM_0221/5/3010:3012,
1/5/3042:3043,
1/5/3098:3100,
1/5/3134:3136
No text annotation
homologous
J4_8P9A_020
J4_65356.1
J4_5TGM_0231/6/99:107,
1/6/307:309,
1/6/357:361,
1/6/383:384
No text annotation
homologous
J4_8P9A_021
J4_15241.1
J4_5TGM_0241/6/622:624,
1/6/975:980,
1/6/1021:1032,
1/6/1103:1104
No text annotation
homologous
J4_8P9A_022
J4_61885.5
J5_5TGM_0011/1/20:22,
1/4/35:42,
1/4/102:107,
1/4/115:116,
1/4/137:139
No text annotation
homologous
J5_8P9A_010
J5_01737.2
J5_5TGM_0021/1/658:663,
1/1/799:802,
1/1/941:944,
1/1/1375:1376,
1/1/1431:1437
No text annotation
homologous
J5_8P9A_011
J5_63811.1
J5_5TGM_0031/1/675:678,
1/1/702:706,
1/1/713:721,
1/1/749:751,
1/1/782:787
No text annotation
homologous
J5_8P9A_012
J5_23272.1
J5_5TGM_0041/1/1906:1914,
1/1/1938:1939,
1/1/2109:2110,
1/1/2114:2122,
1/1/2331:2333
No text annotation
homologous
J5_8P9A_013
J5_62523.6
J5_5TGM_0051/1/2399:2406,
1/1/2815:2823,
1/1/2867:2876,
1/1/2951:2957,
1/1/2975:2980
No text annotation
J5_5TGM_0061/1/2416:2419,
1/1/2611:2614,
1/1/2627:2628,
1/1/2650:2651,
1/1/2798:2804
No text annotation
homologous
J5_8P9A_015
J5_08912.1
J5_5TGM_0211/2/31:35,
1/2/473:479,
1/2/509:516,
1/2/536:546,
1/2/592:595
No text annotation
J5_5TGM_0081/2/54:57,
1/2/90:97,
1/2/386:388,
1/2/409:411,
1/2/422:426
No text annotation
homologous
J5_8P9A_017
J5_59910.5
J5_5TGM_0091/2/124:143,
1/2/172:182,
1/2/203:204,
1/2/263:265,
1/2/289:293
No text annotation
J5_5TGM_0101/2/124:143,
1/2/172:182,
1/2/203:204,
1/2/263:267,
1/2/288:293
No text annotation
J5_5TGM_0221/2/636:641,
1/2/676:681,
1/2/723:727,
1/2/790:800,
1/2/837:843
No text annotation
J5_5TGM_0121/5/20:22,
1/8/35:42,
1/8/102:107,
1/8/115:116,
1/8/137:139
No text annotation
homologous
J5_8P9A_010
J5_01737.2
J5_5TGM_0131/5/658:663,
1/5/799:802,
1/5/941:944,
1/5/1375:1376,
1/5/1431:1437
No text annotation
homologous
J5_8P9A_011
J5_63811.1
J5_5TGM_0141/5/675:678,
1/5/702:706,
1/5/713:721,
1/5/749:751,
1/5/782:787
No text annotation
homologous
J5_8P9A_012
J5_23272.1
J5_5TGM_0151/5/1906:1914,
1/5/1938:1939,
1/5/2109:2110,
1/5/2114:2122,
1/5/2331:2333
No text annotation
homologous
J5_8P9A_013
J5_62523.6
J5_5TGM_0231/5/2399:2406,
1/5/2815:2823,
1/5/2867:2876,
1/5/2951:2957,
1/5/2975:2980
No text annotation
J5_5TGM_0171/5/2416:2419,
1/5/2611:2614,
1/5/2627:2628,
1/5/2650:2651,
1/5/2798:2804
No text annotation
homologous
J5_8P9A_015
J5_08912.1
J5_5TGM_0181/6/31:35,
1/6/473:479,
1/6/509:516,
1/6/536:546,
1/6/592:595
No text annotation
J5_5TGM_0191/6/54:57,
1/6/90:97,
1/6/386:388,
1/6/409:411,
1/6/422:426
No text annotation
homologous
J5_8P9A_017
J5_59910.5
J5_5TGM_0241/6/636:641,
1/6/693:698,
1/6/740:744,
1/6/807:817,
1/6/854:860
No text annotation
J6_5TGM_0011/1/22:27,
1/1/58:68,
1/1/75:79,
1/1/106:110,
1/1/321:331,
1/4/32:35
No text annotation
J6_5TGM_0021/1/2416:2419,
1/1/2611:2614,
1/1/2627:2628,
1/1/2650:2653,
1/1/2754:2765,
1/1/2793:2804
No text annotation
J6_5TGM_0031/5/22:27,
1/5/58:68,
1/5/75:79,
1/5/106:110,
1/5/321:331,
1/8/32:35
No text annotation
J6_5TGM_0041/5/2416:2419,
1/5/2611:2614,
1/5/2627:2628,
1/5/2650:2653,
1/5/2754:2765,
1/5/2793:2804
No text annotation
J7_5TGM_0031/1/949:954,
1/1/967:968,
1/1/1114:1117,
1/1/1141:1146,
1/1/1157:1161,
1/1/1338:1339,
1/1/1365:1370
No text annotation
J7_5TGM_0021/5/949:954,
1/5/967:968,
1/5/1114:1117,
1/5/1141:1146,
1/5/1157:1161,
1/5/1338:1339,
1/5/1365:1370
No text annotation

Problematic loops

#loop idProblemSequence
J3_5TGM_063No text annotation
J3_5TGM_064No text annotation
J3_5TGM_010No text annotation
J3_5TGM_013No text annotation
J3_5TGM_016No text annotation
J3_5TGM_074No text annotation
J3_5TGM_032No text annotation
J3_5TGM_040No text annotation
J3_5TGM_043No text annotation
J3_5TGM_088No text annotation
J3_5TGM_055No text annotation
J5_5TGM_007No text annotation
J5_5TGM_011No text annotation
J5_5TGM_016No text annotation
J5_5TGM_020No text annotation
J7_5TGM_001No text annotation

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