5TGM | Motifs

229 Hairpin loops
466 Internal loops
58 Junction loops

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	HL_5TGM_001	1/1/38:45	homologous HL_5TBW_001	NA HL_23481.5*
2	HL_5TGM_002	1/1/69:74	homologous HL_5TBW_002	NA HL_96776.3*
3	HL_5TGM_003	1/1/90:96	homologous HL_5TBW_003	NA HL_67216.5*
4	HL_5TGM_004	1/1/132:136	homologous HL_5TBW_004	NA HL_36982.3*
5	HL_5TGM_005	1/1/194:201	T-loop with 1 bulged base homologous HL_5TBW_005	NA HL_68493.6*
6	HL_5TGM_006	1/1/208:212	homologous HL_5TBW_006	NA HL_98557.5*
7	HL_5TGM_007	1/1/216:224	homologous HL_5TBW_007	NA HL_08002.6*
8	HL_5TGM_008	1/1/278:287	homologous HL_5TBW_008	NA HL_54035.7*
9	HL_5TGM_009	1/1/303:312	homologous HL_5TBW_009	NA HL_46142.8*
10	HL_5TGM_010	1/1/357:362	Other HL homologous HL_5TBW_010	NA HL_43074.18*
11	HL_5TGM_011	1/1/382:387	GNRA homologous HL_5TBW_011	NA HL_43074.18*
12	HL_5TGM_012	1/1/541:550	homologous HL_5TBW_124	NA
13	HL_5TGM_013	1/1/599:604	GNRA homologous HL_5TBW_013	NA HL_43074.18*
14	HL_5TGM_014	1/1/639:650	geometric HL_4V7M_040	NA HL_32458.3*
15	HL_5TGM_015	1/1/686:694	homologous HL_5TBW_015	NA HL_80105.3*
16	HL_5TGM_016	1/1/707:712	GNRA homologous HL_5TBW_016	NA HL_43074.18*
17	HL_5TGM_017	1/1/732:737	GNRA homologous HL_5TBW_017	NA HL_43074.18*
18	HL_5TGM_018	1/1/763:768	homologous HL_5TBW_018	NA HL_00996.1*
19	HL_5TGM_019	1/1/844:849	GNRA homologous HL_5TBW_019	NA HL_43074.18*
20	HL_5TGM_020	1/1/876:885	homologous HL_5TBW_020	NA HL_39334.5*
21	HL_5TGM_021	1/1/910:918	homologous HL_5TBW_021	NA HL_05832.1*
22	HL_5TGM_022	1/1/958:963	homologous HL_5TBW_022	NA HL_15942.5*
23	HL_5TGM_023	1/1/1023:1029	GNRA homologous HL_5TBW_023	NA HL_43074.18*
24	HL_5TGM_024	1/1/1076:1083	geometric HL_5TBW_024	NA HL_54035.7*
25	HL_5TGM_025	1/1/1126:1132	GNRA homologous HL_5TBW_025	NA HL_43074.18*
26	HL_5TGM_026	1/1/1148:1155	homologous HL_5TBW_026	NA HL_72451.5*
27	HL_5TGM_027	1/1/1239:1249	homologous HL_5TBW_027	NA HL_92304.3*
28	HL_5TGM_028	1/1/1266:1275	homologous HL_5TBW_028	NA HL_87219.4*
29	HL_5TGM_029	1/1/1347:1357	homologous HL_5TBW_029	NA HL_36095.1*
30	HL_5TGM_030	1/1/1403:1408	GNRA homologous HL_5TBW_030	NA HL_43074.18*
31	HL_5TGM_031	1/1/1462:1470	T-loop with 2 stacked bulged bases homologous HL_5TBW_031	NA HL_33239.17*
32	HL_5TGM_032	1/1/1506:1512	homologous HL_5TBW_032	NA HL_86880.5*
33	HL_5TGM_033	1/1/1544:1549	Other HL homologous HL_5TBW_033	NA HL_43074.18*
34	HL_5TGM_035	1/1/1599:1608	homologous HL_5TBW_035	NA HL_78457.4*
35	HL_5TGM_036	1/1/1634:1639	GNRA homologous HL_5TBW_036	NA HL_43074.18*
36	HL_5TGM_037	1/1/1680:1688	homologous HL_5TBW_037	NA HL_73793.2*
37	HL_5TGM_038	1/1/1719:1725	homologous HL_5TBW_038	NA HL_00923.1*
38	HL_5TGM_039	1/1/1758:1767	NA	NA
39	HL_5TGM_040	1/1/1792:1796	homologous HL_5TBW_040	NA HL_69353.7*
40	HL_5TGM_041	1/1/1844:1851	homologous HL_5TBW_041	NA HL_66171.3*
41	HL_5TGM_042	1/1/1862:1868	GNRA with one bulged base homologous HL_5TBW_042	NA HL_02361.6*
42	HL_5TGM_043	1/1/1923:1928	UNCG homologous HL_5TBW_043	NA HL_79299.11*
43	HL_5TGM_044	1/1/1953:2094	geometric HL_5TBW_044	NA HL_05667.1*
44	HL_5TGM_045	1/1/2110:2114	homologous HL_5TBW_045	NA HL_99223.1*
45	HL_5TGM_046	1/1/2135:2145	homologous HL_5TBW_046	NA HL_43613.4*
46	HL_5TGM_047	1/1/2164:2170	GNRA homologous HL_5TBW_047	NA HL_43074.18*
47	HL_5TGM_048	1/1/2220:2225	Other HL homologous HL_5TBW_048	NA HL_43074.18*
48	HL_5TGM_049	1/1/2253:2263	homologous HL_5TBW_049	NA HL_98248.1*
49	HL_5TGM_050	1/1/2292:2300	homologous HL_5TBW_050	NA HL_53760.4*
50	HL_5TGM_051	1/1/2369:2378	homologous HL_5TBW_051	NA HL_90642.5*
51	HL_5TGM_052	1/1/2441:2506	homologous HL_5TBW_052	NA HL_26772.1*
52	HL_5TGM_053	1/1/2533:2546	NA	NA
53	HL_5TGM_054	1/1/2568:2573	homologous HL_5TBW_053	NA HL_67205.1*
54	HL_5TGM_055	1/1/2616:2624	geometric HL_5TBW_054	NA HL_46891.3*
55	HL_5TGM_056	1/1/2633:2645	homologous HL_5TBW_055	NA HL_19870.5*
56	HL_5TGM_057	1/1/2673:2681	homologous HL_5TBW_056	NA HL_76406.3*
57	HL_5TGM_058	1/1/2693:2700	homologous HL_5TBW_057	NA HL_46142.8*
58	HL_5TGM_059	1/1/2724:2732	homologous HL_5TBW_058	NA HL_14725.1*
59	HL_5TGM_060	1/1/2744:2749	GNRA homologous HL_5TBW_059	NA HL_43074.18*
60	HL_5TGM_061	1/1/2776:2784	homologous HL_5TBW_060	NA HL_46142.8*
61	HL_5TGM_062	1/1/2840:2848	homologous HL_5TBW_061	NA HL_36421.5*
62	HL_5TGM_063	1/1/2897:2904	homologous HL_5TBW_062	NA HL_92681.5*
63	HL_5TGM_064	1/1/2920:2926	homologous HL_5TBW_063	NA HL_26055.6*
64	HL_5TGM_065	1/1/2963:2968	GNRA homologous HL_5TBW_064	NA HL_43074.18*
65	HL_5TGM_066	1/1/3025:3030	GNRA homologous HL_5TBW_065	NA HL_43074.18*
66	HL_5TGM_067	1/1/3068:3073	Ribsomal LSU H95 homologous HL_5TBW_066	NA HL_67719.1*
67	HL_5TGM_068	1/1/3110:3124	homologous HL_5TBW_067	NA HL_56677.5*
68	HL_5TGM_069	1/1/3194:3197	geometric HL_5TBW_068	NA HL_46546.1*
69	HL_5TGM_070	1/1/3240:3247	homologous HL_5TBW_069	NA HL_27757.1*
70	HL_5TGM_071	1/1/3303:3311	homologous HL_5TBW_070	NA HL_05018.6*
71	HL_5TGM_072	1/1/3350:3353	geometric HL_5TBW_071	NA HL_69353.7*
72	HL_5TGM_073	1/2/7:17	homologous HL_4V88_186	NA HL_67265.4*
73	HL_5TGM_074	1/2/70:81	homologous HL_4V88_187	NA HL_07268.1*
74	HL_5TGM_075	1/2/154:160	Other HL homologous HL_4V88_188	NA HL_43074.18*
75	HL_5TGM_076	1/2/190:195	homologous HL_4V88_189	NA HL_39228.1*
76	HL_5TGM_077	1/2/228:237	NA	NA
77	HL_5TGM_078	1/2/243:250	T-loop with 1 bulged base homologous HL_4V88_191	NA HL_68493.6*
78	HL_5TGM_079	1/2/276:279	geometric HL_4WF9_037	NA HL_69353.7*
79	HL_5TGM_080	1/2/330:338	homologous HL_4V88_193	NA HL_93727.5*
80	HL_5TGM_081	1/2/368:373	homologous HL_4V88_194	NA HL_18785.1*
81	HL_5TGM_082	1/2/393:404	homologous HL_4V88_195	NA HL_22443.1*
82	HL_5TGM_083	1/2/414:419	UNCG homologous HL_4V88_196	NA HL_79299.11*
83	HL_5TGM_084	1/2/450:456	homologous HL_4V88_197	NA HL_50374.1*
84	HL_5TGM_085	1/2/486:501	NA	NA
85	HL_5TGM_086	1/2/520:532	homologous HL_4V88_199	NA HL_17086.2*
86	HL_5TGM_087	1/2/569:574	Other HL homologous HL_4V88_200	NA HL_43074.18*
87	HL_5TGM_088	1/2/652:665	NA	NA
88	HL_5TGM_089	1/2/686:718	NA	NA
89	HL_5TGM_090	1/2/747:755	homologous HL_4V88_203	NA HL_72066.1*
90	HL_5TGM_091	1/2/760:766	geometric HL_1WZ2_007	NA HL_05692.1*
91	HL_5TGM_092	1/2/812:826	homologous HL_4V88_205	NA HL_03603.1*
92	HL_5TGM_093	1/2/883:892	homologous HL_4V88_206	NA HL_87219.4*
93	HL_5TGM_094	1/2/920:925	Other HL homologous HL_4V88_207	NA HL_43074.18*
94	HL_5TGM_095	1/2/980:990	homologous HL_4V88_208	NA HL_87219.4*
95	HL_5TGM_096	1/2/1038:1047	NA	NA
96	HL_5TGM_097	1/2/1067:1072	Other HL homologous HL_4V88_210	NA HL_43074.18*
97	HL_5TGM_098	1/2/1104:1109	GNRA homologous HL_4V88_211	NA HL_43074.18*
98	HL_5TGM_099	1/2/1171:1180	homologous HL_4V88_212	NA HL_96854.1*
99	HL_5TGM_100	1/2/1221:1230	homologous HL_4V88_213	NA HL_30819.1*
100	HL_5TGM_101	1/2/1279:1284	GNRA homologous HL_4V88_214	NA HL_43074.18*
101	HL_5TGM_102	1/2/1292:1299	homologous HL_4V88_215	NA HL_54035.7*
102	HL_5TGM_103	1/2/1342:1347	homologous HL_4V88_216	NA HL_82678.2*
103	HL_5TGM_104	1/2/1379:1385	homologous HL_4V88_217	NA HL_67216.5*
104	HL_5TGM_105	1/2/1484:1489	GNRA homologous HL_4V88_218	NA HL_43074.18*
105	HL_5TGM_106	1/2/1533:1544	homologous HL_4V88_219	NA HL_32458.3*
106	HL_5TGM_107	1/2/1577:1585	homologous HL_4V88_220	NA HL_01181.4*
107	HL_5TGM_109	1/2/1761:1766	Other HL homologous HL_4V88_222	NA HL_43074.18*
108	HL_5TGM_111	1/3/36:41	NA	NA
109	HL_5TGM_112	1/3/88:93	NA	NA
110	HL_5TGM_113	1/4/73:78	Other HL homologous HL_5TBW_074	NA HL_02361.6*
111	HL_5TGM_114	1/4/108:114	homologous HL_5TBW_075	NA HL_06569.2*
112	HL_5TGM_115	1/4/124:129	homologous HL_5TBW_076	NA HL_60357.1*
113	HL_5TGM_116	1/5/31:53	NA	NA
114	HL_5TGM_117	1/5/69:74	homologous HL_5TBW_002	NA HL_96776.3*
115	HL_5TGM_118	1/5/90:96	homologous HL_5TBW_003	NA HL_67216.5*
116	HL_5TGM_119	1/5/132:136	homologous HL_5TBW_004	NA HL_36982.3*
117	HL_5TGM_120	1/5/194:201	T-loop with 1 bulged base homologous HL_5TBW_005	NA HL_68493.6*
118	HL_5TGM_121	1/5/208:212	homologous HL_5TBW_006	NA HL_98557.5*
119	HL_5TGM_122	1/5/216:224	homologous HL_5TBW_007	NA HL_08002.6*
120	HL_5TGM_123	1/5/278:287	homologous HL_5TBW_008	NA HL_54035.7*
121	HL_5TGM_124	1/5/303:312	homologous HL_5TBW_009	NA HL_46142.8*
122	HL_5TGM_125	1/5/357:362	Other HL homologous HL_5TBW_010	NA HL_43074.18*
123	HL_5TGM_126	1/5/382:387	GNRA homologous HL_5TBW_011	NA HL_43074.18*
124	HL_5TGM_127	1/5/543:548	geometric HL_1U1Y_001	NA HL_16568.1*
125	HL_5TGM_128	1/5/599:604	GNRA homologous HL_5TBW_013	NA HL_43074.18*
126	HL_5TGM_129	1/5/640:649	T-loop with 2 stacked bulged bases homologous HL_5TBW_014	NA HL_33239.17*
127	HL_5TGM_130	1/5/686:694	homologous HL_5TBW_015	NA HL_80105.3*
128	HL_5TGM_131	1/5/707:712	GNRA homologous HL_5TBW_016	NA HL_43074.18*
129	HL_5TGM_132	1/5/732:737	GNRA homologous HL_5TBW_017	NA HL_43074.18*
130	HL_5TGM_133	1/5/763:768	homologous HL_5TBW_018	NA HL_00996.1*
131	HL_5TGM_134	1/5/844:849	GNRA homologous HL_5TBW_019	NA HL_43074.18*
132	HL_5TGM_135	1/5/876:885	homologous HL_5TBW_020	NA HL_39334.5*
133	HL_5TGM_136	1/5/910:918	homologous HL_5TBW_021	NA HL_05832.1*
134	HL_5TGM_137	1/5/958:963	homologous HL_5TBW_022	NA HL_15942.5*
135	HL_5TGM_138	1/5/1023:1029	NA	NA
136	HL_5TGM_139	1/5/1076:1083	homologous HL_5TBW_024	NA HL_54035.7*
137	HL_5TGM_140	1/5/1126:1132	GNRA homologous HL_5TBW_025	NA HL_43074.18*
138	HL_5TGM_141	1/5/1148:1155	homologous HL_5TBW_026	NA HL_72451.5*
139	HL_5TGM_142	1/5/1238:1250	NA	NA
140	HL_5TGM_143	1/5/1267:1274	geometric HL_5D8H_002	NA HL_93727.5*
141	HL_5TGM_144	1/5/1347:1357	homologous HL_5TBW_141	NA
142	HL_5TGM_145	1/5/1403:1408	GNRA homologous HL_5TBW_030	NA HL_43074.18*
143	HL_5TGM_146	1/5/1462:1470	T-loop with 2 stacked bulged bases homologous HL_5TBW_031	NA HL_33239.17*
144	HL_5TGM_147	1/5/1506:1512	homologous HL_5TBW_032	NA HL_86880.5*
145	HL_5TGM_148	1/5/1544:1549	Other HL homologous HL_5TBW_033	NA HL_43074.18*
146	HL_5TGM_150	1/5/1599:1608	homologous HL_5TBW_035	NA HL_78457.4*
147	HL_5TGM_151	1/5/1634:1639	GNRA homologous HL_5TBW_036	NA HL_43074.18*
148	HL_5TGM_152	1/5/1680:1688	homologous HL_5TBW_037	NA HL_73793.2*
149	HL_5TGM_153	1/5/1719:1725	homologous HL_5TBW_038	NA HL_00923.1*
150	HL_5TGM_154	1/5/1758:1767	NA	NA
151	HL_5TGM_155	1/5/1792:1796	homologous HL_5TBW_040	NA HL_69353.7*
152	HL_5TGM_156	1/5/1844:1851	homologous HL_5TBW_041	NA HL_66171.3*
153	HL_5TGM_157	1/5/1862:1868	GNRA with one bulged base homologous HL_5TBW_042	NA HL_02361.6*
154	HL_5TGM_158	1/5/1923:1928	UNCG homologous HL_5TBW_043	NA HL_79299.11*
155	HL_5TGM_159	1/5/1952:2094	NA	NA
156	HL_5TGM_160	1/5/2110:2114	homologous HL_5TBW_045	NA HL_99223.1*
157	HL_5TGM_161	1/5/2135:2145	homologous HL_5TBW_046	NA HL_43613.4*
158	HL_5TGM_162	1/5/2164:2170	GNRA homologous HL_5TBW_047	NA HL_43074.18*
159	HL_5TGM_163	1/5/2220:2225	Other HL homologous HL_5TBW_048	NA HL_43074.18*
160	HL_5TGM_164	1/5/2253:2263	homologous HL_5TBW_049	NA HL_98248.1*
161	HL_5TGM_165	1/5/2292:2300	homologous HL_5TBW_050	NA HL_53760.4*
162	HL_5TGM_166	1/5/2369:2378	homologous HL_5TBW_051	NA HL_90642.5*
163	HL_5TGM_167	1/5/2437:2510	NA	NA
164	HL_5TGM_168	1/5/2535:2544	NA	NA
165	HL_5TGM_169	1/5/2568:2573	geometric HL_5TBW_022	NA HL_15942.5*
166	HL_5TGM_170	1/5/2616:2624	homologous HL_5TBW_054	NA HL_46891.3*
167	HL_5TGM_171	1/5/2633:2645	homologous HL_5TBW_055	NA HL_19870.5*
168	HL_5TGM_172	1/5/2673:2681	homologous HL_5TBW_056	NA HL_76406.3*
169	HL_5TGM_173	1/5/2693:2700	homologous HL_5TBW_057	NA HL_46142.8*
170	HL_5TGM_174	1/5/2724:2732	homologous HL_5TBW_058	NA HL_14725.1*
171	HL_5TGM_175	1/5/2744:2749	GNRA homologous HL_5TBW_059	NA HL_43074.18*
172	HL_5TGM_176	1/5/2776:2784	homologous HL_5TBW_060	NA HL_46142.8*
173	HL_5TGM_177	1/5/2840:2848	homologous HL_5TBW_061	NA HL_36421.5*
174	HL_5TGM_178	1/5/2897:2904	homologous HL_5TBW_062	NA HL_92681.5*
175	HL_5TGM_179	1/5/2920:2926	homologous HL_5TBW_063	NA HL_26055.6*
176	HL_5TGM_180	1/5/2963:2968	GNRA homologous HL_5TBW_064	NA HL_43074.18*
177	HL_5TGM_181	1/5/3025:3030	GNRA homologous HL_5TBW_065	NA HL_43074.18*
178	HL_5TGM_182	1/5/3068:3073	Ribsomal LSU H95 homologous HL_5TBW_066	NA HL_67719.1*
179	HL_5TGM_183	1/5/3110:3124	homologous HL_5TBW_067	NA HL_56677.5*
180	HL_5TGM_184	1/5/3193:3199	Other HL geometric HL_5J7L_200	NA HL_96776.3*
181	HL_5TGM_185	1/5/3240:3247	homologous HL_5TBW_069	NA HL_27757.1*
182	HL_5TGM_186	1/5/3303:3311	homologous HL_5TBW_070	NA HL_05018.6*
183	HL_5TGM_187	1/5/3350:3353	homologous HL_5TBW_071	NA HL_69353.7*
184	HL_5TGM_188	1/6/7:17	NA	NA
185	HL_5TGM_190	1/6/154:160	Other HL homologous HL_4V88_188	NA HL_43074.18*
186	HL_5TGM_191	1/6/190:195	homologous HL_4V88_189	NA HL_39228.1*
187	HL_5TGM_193	1/6/243:250	T-loop with 1 bulged base homologous HL_4V88_191	NA HL_68493.6*
188	HL_5TGM_194	1/6/276:279	geometric HL_4V88_192	NA HL_69353.7*
189	HL_5TGM_195	1/6/330:338	homologous HL_4V88_193	NA HL_93727.5*
190	HL_5TGM_196	1/6/368:373	homologous HL_4V88_194	NA HL_18785.1*
191	HL_5TGM_197	1/6/393:404	homologous HL_4V88_195	NA HL_22443.1*
192	HL_5TGM_198	1/6/414:419	UNCG geometric HL_4V88_196	NA HL_79299.11*
193	HL_5TGM_199	1/6/450:456	homologous HL_4V88_197	NA HL_50374.1*
194	HL_5TGM_201	1/6/520:532	geometric HL_4V88_199	NA HL_17086.2*
195	HL_5TGM_202	1/6/569:574	Other HL homologous HL_4V88_200	NA HL_43074.18*
196	HL_5TGM_205	1/6/764:772	homologous HL_4V88_203	NA HL_72066.1*
197	HL_5TGM_206	1/6/777:783	homologous HL_4V88_204	NA HL_83225.1*
198	HL_5TGM_207	1/6/829:843	homologous HL_4V88_205	NA HL_03603.1*
199	HL_5TGM_208	1/6/900:909	homologous HL_4V88_206	NA HL_87219.4*
200	HL_5TGM_209	1/6/937:942	Other HL homologous HL_4V88_207	NA HL_43074.18*
201	HL_5TGM_210	1/6/997:1007	homologous HL_4V88_208	NA HL_87219.4*
202	HL_5TGM_211	1/6/1055:1064	homologous HL_4V88_209	NA HL_32255.1*
203	HL_5TGM_212	1/6/1084:1089	Other HL homologous HL_4V88_210	NA HL_43074.18*
204	HL_5TGM_213	1/6/1121:1126	GNRA homologous HL_4V88_211	NA HL_43074.18*
205	HL_5TGM_214	1/6/1188:1197	homologous HL_4V88_212	NA HL_96854.1*
206	HL_5TGM_215	1/6/1238:1247	homologous HL_4V88_213	NA HL_30819.1*
207	HL_5TGM_216	1/6/1296:1301	GNRA homologous HL_4V88_214	NA HL_43074.18*
208	HL_5TGM_217	1/6/1309:1316	homologous HL_4V88_215	NA HL_54035.7*
209	HL_5TGM_218	1/6/1359:1364	homologous HL_4V88_216	NA HL_82678.2*
210	HL_5TGM_219	1/6/1396:1402	homologous HL_4V88_217	NA HL_67216.5*
211	HL_5TGM_220	1/6/1501:1506	GNRA homologous HL_4V88_218	NA HL_43074.18*
212	HL_5TGM_221	1/6/1550:1561	homologous HL_4V88_219	NA HL_32458.3*
213	HL_5TGM_222	1/6/1594:1602	homologous HL_4V88_220	NA HL_01181.4*
214	HL_5TGM_224	1/6/1778:1783	Other HL homologous HL_4V88_222	NA HL_43074.18*
215	HL_5TGM_225	1/7/36:41	NA	NA
216	HL_5TGM_226	1/7/88:93	NA	NA
217	HL_5TGM_227	1/8/69:89	NA	NA
218	HL_5TGM_228	1/8/108:114	homologous HL_5TBW_075	NA HL_06569.2*
219	HL_5TGM_229	1/8/124:129	homologous HL_5TBW_076	NA HL_60357.1*

Problematic loops

#	loop id	Problem	Sequence
1	HL_5TGM_034	all high RSRZ	homologous HL_5TBW_034
2	HL_5TGM_108	missing nts	NA
3	HL_5TGM_110	all high RSRZ	NA
4	HL_5TGM_149	all high RSRZ	NA
5	HL_5TGM_189	missing nts	homologous HL_4V88_187
6	HL_5TGM_192	all high RSRZ	homologous HL_4V88_190
7	HL_5TGM_200	missing nts	NA
8	HL_5TGM_203	missing nts	NA
9	HL_5TGM_204	missing nts	NA
10	HL_5TGM_223	missing nts	NA

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	IL_5TGM_001	1/1/3:4, 1/4/155:156	NA	NA
2	IL_5TGM_002	1/1/7:8, 1/4/150:152	Single bulged C homologous IL_5TBW_002	NA IL_61258.10*
3	IL_5TGM_003	1/1/13:15, 1/4/144:145	Single bulged U homologous IL_5TBW_003	NA IL_83039.11*
4	IL_5TGM_004	1/1/27:28, 1/1/56:58	Single stack bend homologous IL_5TBW_004	NA IL_04038.4*
5	IL_5TGM_005	1/1/31:38, 1/1/45:53	tSH-tHW-tHH-tHS geometric IL_5TBW_005	NA IL_22863.1*
6	IL_5TGM_006	1/1/82:89, 1/1/97:103	homologous IL_5TBW_006	NA IL_29509.1*
7	IL_5TGM_007	1/1/123:124, 1/1/144:149	homologous IL_5TBW_007	NA IL_19724.1*
8	IL_5TGM_008	1/1/125:127, 1/1/141:143	homologous IL_5TBW_008	NA IL_01312.13*
9	IL_5TGM_009	1/1/163:166, 1/1/256:258	Other IL geometric IL_5TBW_064	NA IL_87630.5*
10	IL_5TGM_010	1/1/169:170, 1/1/248:253	homologous IL_5TBW_010	NA IL_76195.1*
11	IL_5TGM_011	1/1/177:179, 1/1/237:241	Major groove platform with extra pair homologous IL_5TBW_011	NA IL_87630.5*
12	IL_5TGM_012	1/1/189:191, 1/1/204:205	Single bulged U homologous IL_5TBW_012	NA IL_83039.11*
13	IL_5TGM_013	1/1/337:339, 1/4/25:26	Single bulged A homologous IL_5TBW_013	NA IL_80007.16*
14	IL_5TGM_014	1/1/376:379, 1/1/390:403	homologous IL_5TBW_014	NA IL_60992.5*
15	IL_5TGM_015	1/1/404:410, 1/4/13:19	Triple sheared with non-canonical cWW homologous IL_5TBW_015	NA IL_66414.5*
16	IL_5TGM_016	1/1/429:431, 1/1/628:630	homologous IL_5TBW_016	NA IL_01312.13*
17	IL_5TGM_017	1/1/435:495, 1/1/618:624	homologous IL_5TBW_017	NA IL_33557.1*
18	IL_5TGM_018	1/1/512:513, 1/1/577:579	Single bulged A homologous IL_5TBW_018	NA IL_40508.4*
19	IL_5TGM_019	1/1/517:525, 1/1/567:573	homologous IL_5TBW_019	NA IL_41593.1*
20	IL_5TGM_020	1/1/531:538, 1/1/553:561	homologous IL_5TBW_020	NA IL_94501.1*
21	IL_5TGM_021	1/1/668:670, 1/1/792:794	homologous IL_5TBW_021	NA IL_01312.13*
22	IL_5TGM_022	1/1/680:684, 1/1/696:700	homologous IL_5TBW_022	NA IL_92343.1*
23	IL_5TGM_023	1/1/725:728, 1/1/741:745	UAA/GAN homologous IL_5TBW_023	NA IL_53523.5*
24	IL_5TGM_024	1/1/752:753, 1/1/779:781	Single bulged A homologous IL_5TBW_024	NA IL_80007.16*
25	IL_5TGM_025	1/1/755:756, 1/1/775:777	Single bulged U homologous IL_5TBW_025	NA IL_83039.11*
26	IL_5TGM_026	1/1/758:763, 1/1/768:773	geometric IL_5TBW_026	NA IL_19954.1*
27	IL_5TGM_027	1/1/803:805, 1/1/938:940	homologous IL_5TBW_027	NA IL_01312.13*
28	IL_5TGM_028	1/1/805:809, 1/1/931:938	geometric IL_5TBW_028	NA IL_17470.5*
29	IL_5TGM_029	1/1/833:834, 1/1/859:861	Single bulged G geometric IL_5TBW_029	NA IL_99645.1*
30	IL_5TGM_030	1/1/834:838, 1/1/855:859	Triple sheared homologous IL_5TBW_030	NA IL_56467.6*
31	IL_5TGM_031	1/1/869:872, 1/1/888:890	Major groove platform with extra cWW homologous IL_5TBW_031	NA IL_95485.6*
32	IL_5TGM_032	1/1/873:875, 1/1/886:887	Single bulged U homologous IL_5TBW_032	NA IL_83039.11*
33	IL_5TGM_033	1/1/907:909, 1/1/919:923	Multiple bulged bases homologous IL_5TBW_033	NA IL_90991.5*
34	IL_5TGM_034	1/1/954:956, 1/1/965:967	homologous IL_5TBW_034	NA IL_01312.13*
35	IL_5TGM_035	1/1/969:970, 1/1/1111:1113	Single stack bend homologous IL_5TBW_035	NA IL_04038.4*
36	IL_5TGM_036	1/1/977:981, 1/1/1102:1104	homologous IL_5TBW_036	NA IL_67474.3*
37	IL_5TGM_037	1/1/983:985, 1/1/1099:1100	Single bulged G homologous IL_5TBW_037	NA IL_59137.10*
38	IL_5TGM_038	1/1/991:997, 1/1/1052:1058	7x7 Sarcin-Ricin with intercalated A; G-bulge geometric IL_5TBW_038	NA IL_93830.2*
39	IL_5TGM_039	1/1/997:998, 1/1/1050:1052	Minor groove platform homologous IL_5TBW_039	NA IL_06437.11*
40	IL_5TGM_040	1/1/999:1004, 1/1/1046:1049	C-loop homologous IL_5TBW_040	NA IL_63596.4*
41	IL_5TGM_041	1/1/1005:1009, 1/1/1041:1045	NA	NA
42	IL_5TGM_042	1/1/1009:1011, 1/1/1039:1041	geometric IL_5TBW_042	NA IL_01312.13*
43	IL_5TGM_043	1/1/1013:1018, 1/1/1034:1037	Other IL homologous IL_5TBW_043	NA IL_08757.3*
44	IL_5TGM_044	1/1/1069:1071, 1/1/1087:1089	homologous IL_5TBW_044	NA IL_01312.13*
45	IL_5TGM_045	1/1/1074:1076, 1/1/1083:1084	Single bulged A homologous IL_5TBW_045	NA IL_80007.16*
46	IL_5TGM_046	1/1/1120:1122, 1/1/1136:1138	homologous IL_5TBW_046	NA IL_01312.13*
47	IL_5TGM_047	1/1/1123:1125, 1/1/1133:1135	Isolated cWS basepair homologous IL_5TBW_047	NA IL_67621.5*
48	IL_5TGM_048	1/1/1167:1171, 1/1/1328:1332	UAA/GAN homologous IL_5TBW_048	NA IL_53523.5*
49	IL_5TGM_049	1/1/1173:1180, 1/1/1325:1326	SSU/LSU pseudoknot homologous IL_5TBW_049	NA IL_15861.6*
50	IL_5TGM_050	1/1/1180:1182, 1/1/1324:1325	Single bulged U geometric IL_5TBW_050	NA IL_83039.11*
51	IL_5TGM_051	1/1/1187:1194, 1/1/1314:1319	geometric IL_5TBW_051	NA IL_17971.1*
52	IL_5TGM_052	1/1/1194:1205, 1/1/1299:1314	homologous IL_5TBW_052	NA IL_94878.1*
53	IL_5TGM_053	1/1/1207:1209, 1/1/1296:1297	Single bulged U homologous IL_5TBW_053	NA IL_83039.11*
54	IL_5TGM_054	1/1/1218:1226, 1/1/1283:1287	Kink-turn homologous IL_5TBW_054	NA IL_90538.3*
55	IL_5TGM_055	1/1/1234:1239, 1/1/1249:1254	NA	NA
56	IL_5TGM_056	1/1/1262:1266, 1/1/1275:1277	Major groove platform with extra cWW geometric IL_5TBW_056	NA IL_95485.6*
57	IL_5TGM_057	1/1/1376:1378, 1/1/1428:1431	Isolated cWS basepair homologous IL_5TBW_057	NA IL_01312.13*
58	IL_5TGM_058	1/1/1385:1387, 1/1/1420:1421	Single bulged A homologous IL_5TBW_058	NA IL_80007.16*
59	IL_5TGM_059	1/1/1388:1395, 1/1/1415:1419	Kink-turn homologous IL_5TBW_059	NA IL_29549.9*
60	IL_5TGM_060	1/1/1398:1400, 1/1/1411:1412	Single bulged A homologous IL_5TBW_060	NA IL_80007.16*
61	IL_5TGM_061	1/1/1444:1450, 1/1/2354:2359	7x6 Sarcin-Ricin; G-bulge homologous IL_5TBW_061	NA IL_35110.5*
62	IL_5TGM_062	1/1/1500:1505, 1/1/1513:1516	homologous IL_5TBW_062	NA IL_47743.1*
63	IL_5TGM_063	1/1/1532:1536, 1/1/1585:1590	UAA/GAN homologous IL_5TBW_063	NA IL_53523.5*
64	IL_5TGM_064	1/1/1618:1621, 1/1/1824:1826	Other IL homologous IL_5TBW_064	NA IL_87630.5*
65	IL_5TGM_065	1/1/1623:1626, 1/1/1817:1822	Multiple bulged bases with near cWW homologous IL_5TBW_065	NA IL_51087.2*
66	IL_5TGM_066	1/1/1627:1631, 1/1/1811:1816	geometric IL_5TBW_066	NA IL_74736.1*
67	IL_5TGM_067	1/1/1645:1649, 1/1/1806:1810	Triple sheared geometric IL_5TBW_067	NA IL_56467.6*
68	IL_5TGM_068	1/1/1661:1663, 1/1/1786:1788	homologous IL_5TBW_068	NA IL_01312.13*
69	IL_5TGM_069	1/1/1669:1670, 1/1/1778:1780	Single bulged C geometric IL_5TBW_069	NA IL_61258.10*
70	IL_5TGM_070	1/1/1670:1671, 1/1/1776:1778	Single stack bend homologous IL_5TBW_070	NA IL_72766.2*
71	IL_5TGM_071	1/1/1694:1698, 1/1/1747:1752	homologous IL_5TBW_071	NA IL_14397.1*
72	IL_5TGM_072	1/1/1702:1707, 1/1/1737:1743	homologous IL_5TBW_072	NA IL_98876.1*
73	IL_5TGM_073	1/1/1711:1717, 1/1/1727:1733	Kink-turn homologous IL_5TBW_073	NA IL_76900.1*
74	IL_5TGM_074	1/1/1883:1889, 1/1/2346:2349	homologous IL_5TBW_074	NA IL_79393.8*
75	IL_5TGM_075	1/1/1895:1897, 1/1/2338:2340	Isolated tWW turn homologous IL_5TBW_075	NA IL_54997.5*
76	IL_5TGM_076	1/1/1898:1901, 1/1/2336:2337	Major groove platform; stack outside cWW geometric IL_5TBW_076	NA IL_80663.10*
77	IL_5TGM_077	1/1/1901:1906, 1/1/2333:2336	Intercalated tWH homologous IL_5TBW_077	NA IL_98882.3*
78	IL_5TGM_078	1/1/1918:1923, 1/1/1928:1934	tSH-tSH-tHH-tHS geometric IL_5TBW_078	NA IL_66584.5*
79	IL_5TGM_079	1/1/1940:1942, 1/1/2106:2108	homologous IL_5TBW_079	NA IL_01312.13*
80	IL_5TGM_080	1/1/1947:1948, 1/1/2098:2101	homologous IL_5TBW_080	NA IL_76195.1*
81	IL_5TGM_081	1/1/1949:1953, 1/1/2094:2097	NA	NA
82	IL_5TGM_082	1/1/2128:2129, 1/1/2323:2325	Single bulged A homologous IL_5TBW_082	NA IL_80007.16*
83	IL_5TGM_083	1/1/2156:2161, 1/1/2173:2180	Kink-turn related homologous IL_5TBW_083	NA IL_95993.1*
84	IL_5TGM_084	1/1/2196:2199, 1/1/2245:2246	Major groove outside cWW, minor groove, intercalation pocket homologous IL_5TBW_084	NA IL_72766.2*
85	IL_5TGM_085	1/1/2200:2201, 1/1/2241:2244	Major groove outside cWW, minor groove, intercalation pocket homologous IL_5TBW_085	NA IL_13730.12*
86	IL_5TGM_086	1/1/2204:2206, 1/1/2237:2238	Single bulged U homologous IL_5TBW_086	NA IL_21340.1*
87	IL_5TGM_087	1/1/2206:2210, 1/1/2235:2237	Major groove platform with extra pair geometric IL_5TBW_087	NA IL_87630.5*
88	IL_5TGM_088	1/1/2211:2217, 1/1/2228:2234	homologous IL_5TBW_088	NA IL_36973.5*
89	IL_5TGM_089	1/1/2276:2277, 1/1/2307:2310	Multiple bulged bases geometric IL_5TBW_089	NA IL_69632.1*
90	IL_5TGM_090	1/1/2277:2288, 1/1/2304:2307	homologous IL_5TBW_090	NA IL_45481.1*
91	IL_5TGM_091	1/1/2391:2394, 1/1/2986:2988	Major groove platform with extra pair homologous IL_5TBW_091	NA IL_87630.5*
92	IL_5TGM_092	1/1/2396:2398, 1/1/2981:2984	Minor groove platform with intercalation homologous IL_5TBW_092	NA IL_86964.1*
93	IL_5TGM_093	1/1/2409:2411, 1/1/2811:2812	Single bulged U homologous IL_5TBW_093	NA IL_83039.11*
94	IL_5TGM_094	1/1/2412:2413, 1/1/2807:2810	Minor groove platform homologous IL_5TBW_094	NA IL_06437.11*
95	IL_5TGM_095	1/1/2423:2425, 1/1/2604:2607	Isolated tHS basepair with bulges homologous IL_5TBW_095	NA IL_38958.6*
96

5TGM Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops