Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/1/38:45
homologous
HL_5TBW_001
NA

HL_23481.5*
1/1/69:74
homologous
HL_5TBW_002
NA

HL_96776.3*
1/1/90:96
homologous
HL_5TBW_003
NA

HL_67216.5*
1/1/132:136
homologous
HL_5TBW_004
NA

HL_36982.3*
1/1/194:201T-loop with 1 bulged base
homologous
HL_5TBW_005
NA

HL_68493.6*
1/1/208:212
homologous
HL_5TBW_006
NA

HL_98557.5*
1/1/216:224
homologous
HL_5TBW_007
NA

HL_08002.6*
1/1/278:287
homologous
HL_5TBW_008
NA

HL_54035.7*
1/1/303:312
homologous
HL_5TBW_009
NA

HL_46142.8*
1/1/357:362Other HL
homologous
HL_5TBW_010
NA

HL_43074.18*
1/1/382:387GNRA
homologous
HL_5TBW_011
NA

HL_43074.18*
1/1/541:550
homologous
HL_5TBW_124
NA
1/1/599:604GNRA
homologous
HL_5TBW_013
NA

HL_43074.18*
1/1/639:650
geometric
HL_4V7M_040
NA

HL_32458.3*
1/1/686:694
homologous
HL_5TBW_015
NA

HL_80105.3*
1/1/707:712GNRA
homologous
HL_5TBW_016
NA

HL_43074.18*
1/1/732:737GNRA
homologous
HL_5TBW_017
NA

HL_43074.18*
1/1/763:768
homologous
HL_5TBW_018
NA

HL_00996.1*
1/1/844:849GNRA
homologous
HL_5TBW_019
NA

HL_43074.18*
1/1/876:885
homologous
HL_5TBW_020
NA

HL_39334.5*
1/1/910:918
homologous
HL_5TBW_021
NA

HL_05832.1*
1/1/958:963
homologous
HL_5TBW_022
NA

HL_15942.5*
1/1/1023:1029GNRA
homologous
HL_5TBW_023
NA

HL_43074.18*
1/1/1076:1083
geometric
HL_5TBW_024
NA

HL_54035.7*
1/1/1126:1132GNRA
homologous
HL_5TBW_025
NA

HL_43074.18*
1/1/1148:1155
homologous
HL_5TBW_026
NA

HL_72451.5*
1/1/1239:1249
homologous
HL_5TBW_027
NA

HL_92304.3*
1/1/1266:1275
homologous
HL_5TBW_028
NA

HL_87219.4*
1/1/1347:1357
homologous
HL_5TBW_029
NA

HL_36095.1*
1/1/1403:1408GNRA
homologous
HL_5TBW_030
NA

HL_43074.18*
1/1/1462:1470T-loop with 2 stacked bulged bases
homologous
HL_5TBW_031
NA

HL_33239.17*
1/1/1506:1512
homologous
HL_5TBW_032
NA

HL_86880.5*
1/1/1544:1549Other HL
homologous
HL_5TBW_033
NA

HL_43074.18*
1/1/1599:1608
homologous
HL_5TBW_035
NA

HL_78457.4*
1/1/1634:1639GNRA
homologous
HL_5TBW_036
NA

HL_43074.18*
1/1/1680:1688
homologous
HL_5TBW_037
NA

HL_73793.2*
1/1/1719:1725
homologous
HL_5TBW_038
NA

HL_00923.1*
1/1/1758:1767NANA
1/1/1792:1796
homologous
HL_5TBW_040
NA

HL_69353.7*
1/1/1844:1851
homologous
HL_5TBW_041
NA

HL_66171.3*
1/1/1862:1868GNRA with one bulged base
homologous
HL_5TBW_042
NA

HL_02361.6*
1/1/1923:1928UNCG
homologous
HL_5TBW_043
NA

HL_79299.11*
1/1/1953:2094
geometric
HL_5TBW_044
NA

HL_05667.1*
1/1/2110:2114
homologous
HL_5TBW_045
NA

HL_99223.1*
1/1/2135:2145
homologous
HL_5TBW_046
NA

HL_43613.4*
1/1/2164:2170GNRA
homologous
HL_5TBW_047
NA

HL_43074.18*
1/1/2220:2225Other HL
homologous
HL_5TBW_048
NA

HL_43074.18*
1/1/2253:2263
homologous
HL_5TBW_049
NA

HL_98248.1*
1/1/2292:2300
homologous
HL_5TBW_050
NA

HL_53760.4*
1/1/2369:2378
homologous
HL_5TBW_051
NA

HL_90642.5*
1/1/2441:2506
homologous
HL_5TBW_052
NA

HL_26772.1*
1/1/2533:2546NANA
1/1/2568:2573
homologous
HL_5TBW_053
NA

HL_67205.1*
1/1/2616:2624
geometric
HL_5TBW_054
NA

HL_46891.3*
1/1/2633:2645
homologous
HL_5TBW_055
NA

HL_19870.5*
1/1/2673:2681
homologous
HL_5TBW_056
NA

HL_76406.3*
1/1/2693:2700
homologous
HL_5TBW_057
NA

HL_46142.8*
1/1/2724:2732
homologous
HL_5TBW_058
NA

HL_14725.1*
1/1/2744:2749GNRA
homologous
HL_5TBW_059
NA

HL_43074.18*
1/1/2776:2784
homologous
HL_5TBW_060
NA

HL_46142.8*
1/1/2840:2848
homologous
HL_5TBW_061
NA

HL_36421.5*
1/1/2897:2904
homologous
HL_5TBW_062
NA

HL_92681.5*
1/1/2920:2926
homologous
HL_5TBW_063
NA

HL_26055.6*
1/1/2963:2968GNRA
homologous
HL_5TBW_064
NA

HL_43074.18*
1/1/3025:3030GNRA
homologous
HL_5TBW_065
NA

HL_43074.18*
1/1/3068:3073Ribsomal LSU H95
homologous
HL_5TBW_066
NA

HL_67719.1*
1/1/3110:3124
homologous
HL_5TBW_067
NA

HL_56677.5*
1/1/3194:3197
geometric
HL_5TBW_068
NA

HL_46546.1*
1/1/3240:3247
homologous
HL_5TBW_069
NA

HL_27757.1*
1/1/3303:3311
homologous
HL_5TBW_070
NA

HL_05018.6*
1/1/3350:3353
geometric
HL_5TBW_071
NA

HL_69353.7*
1/2/7:17
homologous
HL_4V88_186
NA

HL_67265.4*
1/2/70:81
homologous
HL_4V88_187
NA

HL_07268.1*
1/2/154:160Other HL
homologous
HL_4V88_188
NA

HL_43074.18*
1/2/190:195
homologous
HL_4V88_189
NA

HL_39228.1*
1/2/228:237NANA
1/2/243:250T-loop with 1 bulged base
homologous
HL_4V88_191
NA

HL_68493.6*
1/2/276:279
geometric
HL_4WF9_037
NA

HL_69353.7*
1/2/330:338
homologous
HL_4V88_193
NA

HL_93727.5*
1/2/368:373
homologous
HL_4V88_194
NA

HL_18785.1*
1/2/393:404
homologous
HL_4V88_195
NA

HL_22443.1*
1/2/414:419UNCG
homologous
HL_4V88_196
NA

HL_79299.11*
1/2/450:456
homologous
HL_4V88_197
NA

HL_50374.1*
1/2/486:501NANA
1/2/520:532
homologous
HL_4V88_199
NA

HL_17086.2*
1/2/569:574Other HL
homologous
HL_4V88_200
NA

HL_43074.18*
1/2/652:665NANA
1/2/686:718NANA
1/2/747:755
homologous
HL_4V88_203
NA

HL_72066.1*
1/2/760:766
geometric
HL_1WZ2_007
NA

HL_05692.1*
1/2/812:826
homologous
HL_4V88_205
NA

HL_03603.1*
1/2/883:892
homologous
HL_4V88_206
NA

HL_87219.4*
1/2/920:925Other HL
homologous
HL_4V88_207
NA

HL_43074.18*
1/2/980:990
homologous
HL_4V88_208
NA

HL_87219.4*
1/2/1038:1047NANA
1/2/1067:1072Other HL
homologous
HL_4V88_210
NA

HL_43074.18*
1/2/1104:1109GNRA
homologous
HL_4V88_211
NA

HL_43074.18*
1/2/1171:1180
homologous
HL_4V88_212
NA

HL_96854.1*
1/2/1221:1230
homologous
HL_4V88_213
NA

HL_30819.1*
1/2/1279:1284GNRA
homologous
HL_4V88_214
NA

HL_43074.18*
1/2/1292:1299
homologous
HL_4V88_215
NA

HL_54035.7*
1/2/1342:1347
homologous
HL_4V88_216
NA

HL_82678.2*
1/2/1379:1385
homologous
HL_4V88_217
NA

HL_67216.5*
1/2/1484:1489GNRA
homologous
HL_4V88_218
NA

HL_43074.18*
1/2/1533:1544
homologous
HL_4V88_219
NA

HL_32458.3*
1/2/1577:1585
homologous
HL_4V88_220
NA

HL_01181.4*
1/2/1761:1766Other HL
homologous
HL_4V88_222
NA

HL_43074.18*
1/3/36:41NANA
1/3/88:93NANA
1/4/73:78Other HL
homologous
HL_5TBW_074
NA

HL_02361.6*
1/4/108:114
homologous
HL_5TBW_075
NA

HL_06569.2*
1/4/124:129
homologous
HL_5TBW_076
NA

HL_60357.1*
1/5/31:53NANA
1/5/69:74
homologous
HL_5TBW_002
NA

HL_96776.3*
1/5/90:96
homologous
HL_5TBW_003
NA

HL_67216.5*
1/5/132:136
homologous
HL_5TBW_004
NA

HL_36982.3*
1/5/194:201T-loop with 1 bulged base
homologous
HL_5TBW_005
NA

HL_68493.6*
1/5/208:212
homologous
HL_5TBW_006
NA

HL_98557.5*
1/5/216:224
homologous
HL_5TBW_007
NA

HL_08002.6*
1/5/278:287
homologous
HL_5TBW_008
NA

HL_54035.7*
1/5/303:312
homologous
HL_5TBW_009
NA

HL_46142.8*
1/5/357:362Other HL
homologous
HL_5TBW_010
NA

HL_43074.18*
1/5/382:387GNRA
homologous
HL_5TBW_011
NA

HL_43074.18*
1/5/543:548
geometric
HL_1U1Y_001
NA

HL_16568.1*
1/5/599:604GNRA
homologous
HL_5TBW_013
NA

HL_43074.18*
1/5/640:649T-loop with 2 stacked bulged bases
homologous
HL_5TBW_014
NA

HL_33239.17*
1/5/686:694
homologous
HL_5TBW_015
NA

HL_80105.3*
1/5/707:712GNRA
homologous
HL_5TBW_016
NA

HL_43074.18*
1/5/732:737GNRA
homologous
HL_5TBW_017
NA

HL_43074.18*
1/5/763:768
homologous
HL_5TBW_018
NA

HL_00996.1*
1/5/844:849GNRA
homologous
HL_5TBW_019
NA

HL_43074.18*
1/5/876:885
homologous
HL_5TBW_020
NA

HL_39334.5*
1/5/910:918
homologous
HL_5TBW_021
NA

HL_05832.1*
1/5/958:963
homologous
HL_5TBW_022
NA

HL_15942.5*
1/5/1023:1029NANA
1/5/1076:1083
homologous
HL_5TBW_024
NA

HL_54035.7*
1/5/1126:1132GNRA
homologous
HL_5TBW_025
NA

HL_43074.18*
1/5/1148:1155
homologous
HL_5TBW_026
NA

HL_72451.5*
1/5/1238:1250NANA
1/5/1267:1274
geometric
HL_5D8H_002
NA

HL_93727.5*
1/5/1347:1357
homologous
HL_5TBW_141
NA
1/5/1403:1408GNRA
homologous
HL_5TBW_030
NA

HL_43074.18*
1/5/1462:1470T-loop with 2 stacked bulged bases
homologous
HL_5TBW_031
NA

HL_33239.17*
1/5/1506:1512
homologous
HL_5TBW_032
NA

HL_86880.5*
1/5/1544:1549Other HL
homologous
HL_5TBW_033
NA

HL_43074.18*
1/5/1599:1608
homologous
HL_5TBW_035
NA

HL_78457.4*
1/5/1634:1639GNRA
homologous
HL_5TBW_036
NA

HL_43074.18*
1/5/1680:1688
homologous
HL_5TBW_037
NA

HL_73793.2*
1/5/1719:1725
homologous
HL_5TBW_038
NA

HL_00923.1*
1/5/1758:1767NANA
1/5/1792:1796
homologous
HL_5TBW_040
NA

HL_69353.7*
1/5/1844:1851
homologous
HL_5TBW_041
NA

HL_66171.3*
1/5/1862:1868GNRA with one bulged base
homologous
HL_5TBW_042
NA

HL_02361.6*
1/5/1923:1928UNCG
homologous
HL_5TBW_043
NA

HL_79299.11*
1/5/1952:2094NANA
1/5/2110:2114
homologous
HL_5TBW_045
NA

HL_99223.1*
1/5/2135:2145
homologous
HL_5TBW_046
NA

HL_43613.4*
1/5/2164:2170GNRA
homologous
HL_5TBW_047
NA

HL_43074.18*
1/5/2220:2225Other HL
homologous
HL_5TBW_048
NA

HL_43074.18*
1/5/2253:2263
homologous
HL_5TBW_049
NA

HL_98248.1*
1/5/2292:2300
homologous
HL_5TBW_050
NA

HL_53760.4*
1/5/2369:2378
homologous
HL_5TBW_051
NA

HL_90642.5*
1/5/2437:2510NANA
1/5/2535:2544NANA
1/5/2568:2573
geometric
HL_5TBW_022
NA

HL_15942.5*
1/5/2616:2624
homologous
HL_5TBW_054
NA

HL_46891.3*
1/5/2633:2645
homologous
HL_5TBW_055
NA

HL_19870.5*
1/5/2673:2681
homologous
HL_5TBW_056
NA

HL_76406.3*
1/5/2693:2700
homologous
HL_5TBW_057
NA

HL_46142.8*
1/5/2724:2732
homologous
HL_5TBW_058
NA

HL_14725.1*
1/5/2744:2749GNRA
homologous
HL_5TBW_059
NA

HL_43074.18*
1/5/2776:2784
homologous
HL_5TBW_060
NA

HL_46142.8*
1/5/2840:2848
homologous
HL_5TBW_061
NA

HL_36421.5*
1/5/2897:2904
homologous
HL_5TBW_062
NA

HL_92681.5*
1/5/2920:2926
homologous
HL_5TBW_063
NA

HL_26055.6*
1/5/2963:2968GNRA
homologous
HL_5TBW_064
NA

HL_43074.18*
1/5/3025:3030GNRA
homologous
HL_5TBW_065
NA

HL_43074.18*
1/5/3068:3073Ribsomal LSU H95
homologous
HL_5TBW_066
NA

HL_67719.1*
1/5/3110:3124
homologous
HL_5TBW_067
NA

HL_56677.5*
1/5/3193:3199Other HL
geometric
HL_5J7L_200
NA

HL_96776.3*
1/5/3240:3247
homologous
HL_5TBW_069
NA

HL_27757.1*
1/5/3303:3311
homologous
HL_5TBW_070
NA

HL_05018.6*
1/5/3350:3353
homologous
HL_5TBW_071
NA

HL_69353.7*
1/6/7:17NANA
1/6/154:160Other HL
homologous
HL_4V88_188
NA

HL_43074.18*
1/6/190:195
homologous
HL_4V88_189
NA

HL_39228.1*
1/6/243:250T-loop with 1 bulged base
homologous
HL_4V88_191
NA

HL_68493.6*
1/6/276:279
geometric
HL_4V88_192
NA

HL_69353.7*
1/6/330:338
homologous
HL_4V88_193
NA

HL_93727.5*
1/6/368:373
homologous
HL_4V88_194
NA

HL_18785.1*
1/6/393:404
homologous
HL_4V88_195
NA

HL_22443.1*
1/6/414:419UNCG
geometric
HL_4V88_196
NA

HL_79299.11*
1/6/450:456
homologous
HL_4V88_197
NA

HL_50374.1*
1/6/520:532
geometric
HL_4V88_199
NA

HL_17086.2*
1/6/569:574Other HL
homologous
HL_4V88_200
NA

HL_43074.18*
1/6/764:772
homologous
HL_4V88_203
NA

HL_72066.1*
1/6/777:783
homologous
HL_4V88_204
NA

HL_83225.1*
1/6/829:843
homologous
HL_4V88_205
NA

HL_03603.1*
1/6/900:909
homologous
HL_4V88_206
NA

HL_87219.4*
1/6/937:942Other HL
homologous
HL_4V88_207
NA

HL_43074.18*
1/6/997:1007
homologous
HL_4V88_208
NA

HL_87219.4*
1/6/1055:1064
homologous
HL_4V88_209
NA

HL_32255.1*
1/6/1084:1089Other HL
homologous
HL_4V88_210
NA

HL_43074.18*
1/6/1121:1126GNRA
homologous
HL_4V88_211
NA

HL_43074.18*
1/6/1188:1197
homologous
HL_4V88_212
NA

HL_96854.1*
1/6/1238:1247
homologous
HL_4V88_213
NA

HL_30819.1*
1/6/1296:1301GNRA
homologous
HL_4V88_214
NA

HL_43074.18*
1/6/1309:1316
homologous
HL_4V88_215
NA

HL_54035.7*
1/6/1359:1364
homologous
HL_4V88_216
NA

HL_82678.2*
1/6/1396:1402
homologous
HL_4V88_217
NA

HL_67216.5*
1/6/1501:1506GNRA
homologous
HL_4V88_218
NA

HL_43074.18*
1/6/1550:1561
homologous
HL_4V88_219
NA

HL_32458.3*
1/6/1594:1602
homologous
HL_4V88_220
NA

HL_01181.4*
1/6/1778:1783Other HL
homologous
HL_4V88_222
NA

HL_43074.18*
1/7/36:41NANA
1/7/88:93NANA
1/8/69:89NANA
1/8/108:114
homologous
HL_5TBW_075
NA

HL_06569.2*
1/8/124:129
homologous
HL_5TBW_076
NA

HL_60357.1*

Problematic loops

#loop idProblemSequence
HL_5TGM_034
homologous
HL_5TBW_034
HL_5TGM_108NA
HL_5TGM_110NA
HL_5TGM_149NA
HL_5TGM_189
homologous
HL_4V88_187
HL_5TGM_192
homologous
HL_4V88_190
HL_5TGM_200NA
HL_5TGM_203NA
HL_5TGM_204NA
HL_5TGM_223NA

Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/1/3:4,
1/4/155:156
NANA
1/1/7:8,
1/4/150:152
Single bulged C
homologous
IL_5TBW_002
NA

IL_61258.10*
1/1/13:15,
1/4/144:145
Single bulged U
homologous
IL_5TBW_003
NA

IL_83039.11*
1/1/27:28,
1/1/56:58
Single stack bend
homologous
IL_5TBW_004
NA

IL_04038.4*
1/1/31:38,
1/1/45:53
tSH-tHW-tHH-tHS
geometric
IL_5TBW_005
NA

IL_22863.1*
1/1/82:89,
1/1/97:103

homologous
IL_5TBW_006
NA

IL_29509.1*
1/1/123:124,
1/1/144:149

homologous
IL_5TBW_007
NA

IL_19724.1*
1/1/125:127,
1/1/141:143

homologous
IL_5TBW_008
NA

IL_01312.13*
1/1/163:166,
1/1/256:258
Other IL
geometric
IL_5TBW_064
NA

IL_87630.5*
1/1/169:170,
1/1/248:253

homologous
IL_5TBW_010
NA

IL_76195.1*
1/1/177:179,
1/1/237:241
Major groove platform with extra pair
homologous
IL_5TBW_011
NA

IL_87630.5*
1/1/189:191,
1/1/204:205
Single bulged U
homologous
IL_5TBW_012
NA

IL_83039.11*
1/1/337:339,
1/4/25:26
Single bulged A
homologous
IL_5TBW_013
NA

IL_80007.16*
1/1/376:379,
1/1/390:403

homologous
IL_5TBW_014
NA

IL_60992.5*
1/1/404:410,
1/4/13:19
Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA

IL_66414.5*
1/1/429:431,
1/1/628:630

homologous
IL_5TBW_016
NA

IL_01312.13*
1/1/435:495,
1/1/618:624

homologous
IL_5TBW_017
NA

IL_33557.1*
1/1/512:513,
1/1/577:579
Single bulged A
homologous
IL_5TBW_018
NA

IL_40508.4*
1/1/517:525,
1/1/567:573

homologous
IL_5TBW_019
NA

IL_41593.1*
1/1/531:538,
1/1/553:561

homologous
IL_5TBW_020
NA

IL_94501.1*
1/1/668:670,
1/1/792:794

homologous
IL_5TBW_021
NA

IL_01312.13*
1/1/680:684,
1/1/696:700

homologous
IL_5TBW_022
NA

IL_92343.1*
1/1/725:728,
1/1/741:745
UAA/GAN
homologous
IL_5TBW_023
NA

IL_53523.5*
1/1/752:753,
1/1/779:781
Single bulged A
homologous
IL_5TBW_024
NA

IL_80007.16*
1/1/755:756,
1/1/775:777
Single bulged U
homologous
IL_5TBW_025
NA

IL_83039.11*
1/1/758:763,
1/1/768:773

geometric
IL_5TBW_026
NA

IL_19954.1*
1/1/803:805,
1/1/938:940

homologous
IL_5TBW_027
NA

IL_01312.13*
1/1/805:809,
1/1/931:938

geometric
IL_5TBW_028
NA

IL_17470.5*
1/1/833:834,
1/1/859:861
Single bulged G
geometric
IL_5TBW_029
NA

IL_99645.1*
1/1/834:838,
1/1/855:859
Triple sheared
homologous
IL_5TBW_030
NA

IL_56467.6*
1/1/869:872,
1/1/888:890
Major groove platform with extra cWW
homologous
IL_5TBW_031
NA

IL_95485.6*
1/1/873:875,
1/1/886:887
Single bulged U
homologous
IL_5TBW_032
NA

IL_83039.11*
1/1/907:909,
1/1/919:923
Multiple bulged bases
homologous
IL_5TBW_033
NA

IL_90991.5*
1/1/954:956,
1/1/965:967

homologous
IL_5TBW_034
NA

IL_01312.13*
1/1/969:970,
1/1/1111:1113
Single stack bend
homologous
IL_5TBW_035
NA

IL_04038.4*
1/1/977:981,
1/1/1102:1104

homologous
IL_5TBW_036
NA

IL_67474.3*
1/1/983:985,
1/1/1099:1100
Single bulged G
homologous
IL_5TBW_037
NA

IL_59137.10*
1/1/991:997,
1/1/1052:1058
7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5TBW_038
NA

IL_93830.2*
1/1/997:998,
1/1/1050:1052
Minor groove platform
homologous
IL_5TBW_039
NA

IL_06437.11*
1/1/999:1004,
1/1/1046:1049
C-loop
homologous
IL_5TBW_040
NA

IL_63596.4*
1/1/1005:1009,
1/1/1041:1045
NANA
1/1/1009:1011,
1/1/1039:1041

geometric
IL_5TBW_042
NA

IL_01312.13*
1/1/1013:1018,
1/1/1034:1037
Other IL
homologous
IL_5TBW_043
NA

IL_08757.3*
1/1/1069:1071,
1/1/1087:1089

homologous
IL_5TBW_044
NA

IL_01312.13*
1/1/1074:1076,
1/1/1083:1084
Single bulged A
homologous
IL_5TBW_045
NA

IL_80007.16*
1/1/1120:1122,
1/1/1136:1138

homologous
IL_5TBW_046
NA

IL_01312.13*
1/1/1123:1125,
1/1/1133:1135
Isolated cWS basepair
homologous
IL_5TBW_047
NA

IL_67621.5*
1/1/1167:1171,
1/1/1328:1332
UAA/GAN
homologous
IL_5TBW_048
NA

IL_53523.5*
1/1/1173:1180,
1/1/1325:1326
SSU/LSU pseudoknot
homologous
IL_5TBW_049
NA

IL_15861.6*
1/1/1180:1182,
1/1/1324:1325
Single bulged U
geometric
IL_5TBW_050
NA

IL_83039.11*
1/1/1187:1194,
1/1/1314:1319

geometric
IL_5TBW_051
NA

IL_17971.1*
1/1/1194:1205,
1/1/1299:1314

homologous
IL_5TBW_052
NA

IL_94878.1*
1/1/1207:1209,
1/1/1296:1297
Single bulged U
homologous
IL_5TBW_053
NA

IL_83039.11*
1/1/1218:1226,
1/1/1283:1287
Kink-turn
homologous
IL_5TBW_054
NA

IL_90538.3*
1/1/1234:1239,
1/1/1249:1254
NANA
1/1/1262:1266,
1/1/1275:1277
Major groove platform with extra cWW
geometric
IL_5TBW_056
NA

IL_95485.6*
1/1/1376:1378,
1/1/1428:1431
Isolated cWS basepair
homologous
IL_5TBW_057
NA

IL_01312.13*
1/1/1385:1387,
1/1/1420:1421
Single bulged A
homologous
IL_5TBW_058
NA

IL_80007.16*
1/1/1388:1395,
1/1/1415:1419
Kink-turn
homologous
IL_5TBW_059
NA

IL_29549.9*
1/1/1398:1400,
1/1/1411:1412
Single bulged A
homologous
IL_5TBW_060
NA

IL_80007.16*
1/1/1444:1450,
1/1/2354:2359
7x6 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_061
NA

IL_35110.5*
1/1/1500:1505,
1/1/1513:1516

homologous
IL_5TBW_062
NA

IL_47743.1*
1/1/1532:1536,
1/1/1585:1590
UAA/GAN
homologous
IL_5TBW_063
NA

IL_53523.5*
1/1/1618:1621,
1/1/1824:1826
Other IL
homologous
IL_5TBW_064
NA

IL_87630.5*
1/1/1623:1626,
1/1/1817:1822
Multiple bulged bases with near cWW
homologous
IL_5TBW_065
NA

IL_51087.2*
1/1/1627:1631,
1/1/1811:1816

geometric
IL_5TBW_066
NA

IL_74736.1*
1/1/1645:1649,
1/1/1806:1810
Triple sheared
geometric
IL_5TBW_067
NA

IL_56467.6*
1/1/1661:1663,
1/1/1786:1788

homologous
IL_5TBW_068
NA

IL_01312.13*
1/1/1669:1670,
1/1/1778:1780
Single bulged C
geometric
IL_5TBW_069
NA

IL_61258.10*
1/1/1670:1671,
1/1/1776:1778
Single stack bend
homologous
IL_5TBW_070
NA

IL_72766.2*
1/1/1694:1698,
1/1/1747:1752

homologous
IL_5TBW_071
NA

IL_14397.1*
1/1/1702:1707,
1/1/1737:1743

homologous
IL_5TBW_072
NA

IL_98876.1*
1/1/1711:1717,
1/1/1727:1733
Kink-turn
homologous
IL_5TBW_073
NA

IL_76900.1*
1/1/1883:1889,
1/1/2346:2349

homologous
IL_5TBW_074
NA

IL_79393.8*
1/1/1895:1897,
1/1/2338:2340
Isolated tWW turn
homologous
IL_5TBW_075
NA

IL_54997.5*
1/1/1898:1901,
1/1/2336:2337
Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA

IL_80663.10*
1/1/1901:1906,
1/1/2333:2336
Intercalated tWH
homologous
IL_5TBW_077
NA

IL_98882.3*
1/1/1918:1923,
1/1/1928:1934
tSH-tSH-tHH-tHS
geometric
IL_5TBW_078
NA

IL_66584.5*
1/1/1940:1942,
1/1/2106:2108

homologous
IL_5TBW_079
NA

IL_01312.13*
1/1/1947:1948,
1/1/2098:2101

homologous
IL_5TBW_080
NA

IL_76195.1*
1/1/1949:1953,
1/1/2094:2097
NANA
1/1/2128:2129,
1/1/2323:2325
Single bulged A
homologous
IL_5TBW_082
NA

IL_80007.16*
1/1/2156:2161,
1/1/2173:2180
Kink-turn related
homologous
IL_5TBW_083
NA

IL_95993.1*
1/1/2196:2199,
1/1/2245:2246
Major groove outside cWW, minor groove, intercalation pocket
homologous
IL_5TBW_084
NA

IL_72766.2*
1/1/2200:2201,
1/1/2241:2244
Major groove outside cWW, minor groove, intercalation pocket
homologous
IL_5TBW_085
NA

IL_13730.12*
1/1/2204:2206,
1/1/2237:2238
Single bulged U
homologous
IL_5TBW_086
NA

IL_21340.1*
1/1/2206:2210,
1/1/2235:2237
Major groove platform with extra pair
geometric
IL_5TBW_087
NA

IL_87630.5*
1/1/2211:2217,
1/1/2228:2234

homologous
IL_5TBW_088
NA

IL_36973.5*
1/1/2276:2277,
1/1/2307:2310
Multiple bulged bases
geometric
IL_5TBW_089
NA

IL_69632.1*
1/1/2277:2288,
1/1/2304:2307

homologous
IL_5TBW_090
NA

IL_45481.1*
1/1/2391:2394,
1/1/2986:2988
Major groove platform with extra pair
homologous
IL_5TBW_091
NA

IL_87630.5*
1/1/2396:2398,
1/1/2981:2984
Minor groove platform with intercalation
homologous
IL_5TBW_092
NA

IL_86964.1*
1/1/2409:2411,
1/1/2811:2812
Single bulged U
homologous
IL_5TBW_093
NA

IL_83039.11*
1/1/2412:2413,
1/1/2807:2810
Minor groove platform
homologous
IL_5TBW_094
NA

IL_06437.11*
1/1/2423:2425,
1/1/2604:2607
Isolated tHS basepair with bulges
homologous
IL_5TBW_095
NA

IL_38958.6*