5TGM Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/1/38:45 | homologous HL_5TBW_001 | NA HL_23481.5* | ||
1/1/69:74 | homologous HL_5TBW_002 | NA HL_96776.3* | ||
1/1/90:96 | homologous HL_5TBW_003 | NA HL_67216.5* | ||
1/1/132:136 | homologous HL_5TBW_004 | NA HL_36982.3* | ||
1/1/194:201 | T-loop with 1 bulged base homologous HL_5TBW_005 | NA HL_68493.6* | ||
1/1/208:212 | homologous HL_5TBW_006 | NA HL_98557.5* | ||
1/1/216:224 | homologous HL_5TBW_007 | NA HL_08002.6* | ||
1/1/278:287 | homologous HL_5TBW_008 | NA HL_54035.7* | ||
1/1/303:312 | homologous HL_5TBW_009 | NA HL_46142.8* | ||
1/1/357:362 | Other HL homologous HL_5TBW_010 | NA HL_43074.18* | ||
1/1/382:387 | GNRA homologous HL_5TBW_011 | NA HL_43074.18* | ||
1/1/541:550 | homologous HL_5TBW_124 | NA | ||
1/1/599:604 | GNRA homologous HL_5TBW_013 | NA HL_43074.18* | ||
1/1/639:650 | geometric HL_4V7M_040 | NA HL_32458.3* | ||
1/1/686:694 | homologous HL_5TBW_015 | NA HL_80105.3* | ||
1/1/707:712 | GNRA homologous HL_5TBW_016 | NA HL_43074.18* | ||
1/1/732:737 | GNRA homologous HL_5TBW_017 | NA HL_43074.18* | ||
1/1/763:768 | homologous HL_5TBW_018 | NA HL_00996.1* | ||
1/1/844:849 | GNRA homologous HL_5TBW_019 | NA HL_43074.18* | ||
1/1/876:885 | homologous HL_5TBW_020 | NA HL_39334.5* | ||
1/1/910:918 | homologous HL_5TBW_021 | NA HL_05832.1* | ||
1/1/958:963 | homologous HL_5TBW_022 | NA HL_15942.5* | ||
1/1/1023:1029 | GNRA homologous HL_5TBW_023 | NA HL_43074.18* | ||
1/1/1076:1083 | geometric HL_5TBW_024 | NA HL_54035.7* | ||
1/1/1126:1132 | GNRA homologous HL_5TBW_025 | NA HL_43074.18* | ||
1/1/1148:1155 | homologous HL_5TBW_026 | NA HL_72451.5* | ||
1/1/1239:1249 | homologous HL_5TBW_027 | NA HL_92304.3* | ||
1/1/1266:1275 | homologous HL_5TBW_028 | NA HL_87219.4* | ||
1/1/1347:1357 | homologous HL_5TBW_029 | NA HL_36095.1* | ||
1/1/1403:1408 | GNRA homologous HL_5TBW_030 | NA HL_43074.18* | ||
1/1/1462:1470 | T-loop with 2 stacked bulged bases homologous HL_5TBW_031 | NA HL_33239.17* | ||
1/1/1506:1512 | homologous HL_5TBW_032 | NA HL_86880.5* | ||
1/1/1544:1549 | Other HL homologous HL_5TBW_033 | NA HL_43074.18* | ||
1/1/1599:1608 | homologous HL_5TBW_035 | NA HL_78457.4* | ||
1/1/1634:1639 | GNRA homologous HL_5TBW_036 | NA HL_43074.18* | ||
1/1/1680:1688 | homologous HL_5TBW_037 | NA HL_73793.2* | ||
1/1/1719:1725 | homologous HL_5TBW_038 | NA HL_00923.1* | ||
1/1/1758:1767 | NA | NA | ||
1/1/1792:1796 | homologous HL_5TBW_040 | NA HL_69353.7* | ||
1/1/1844:1851 | homologous HL_5TBW_041 | NA HL_66171.3* | ||
1/1/1862:1868 | GNRA with one bulged base homologous HL_5TBW_042 | NA HL_02361.6* | ||
1/1/1923:1928 | UNCG homologous HL_5TBW_043 | NA HL_79299.11* | ||
1/1/1953:2094 | geometric HL_5TBW_044 | NA HL_05667.1* | ||
1/1/2110:2114 | homologous HL_5TBW_045 | NA HL_99223.1* | ||
1/1/2135:2145 | homologous HL_5TBW_046 | NA HL_43613.4* | ||
1/1/2164:2170 | GNRA homologous HL_5TBW_047 | NA HL_43074.18* | ||
1/1/2220:2225 | Other HL homologous HL_5TBW_048 | NA HL_43074.18* | ||
1/1/2253:2263 | homologous HL_5TBW_049 | NA HL_98248.1* | ||
1/1/2292:2300 | homologous HL_5TBW_050 | NA HL_53760.4* | ||
1/1/2369:2378 | homologous HL_5TBW_051 | NA HL_90642.5* | ||
1/1/2441:2506 | homologous HL_5TBW_052 | NA HL_26772.1* | ||
1/1/2533:2546 | NA | NA | ||
1/1/2568:2573 | homologous HL_5TBW_053 | NA HL_67205.1* | ||
1/1/2616:2624 | geometric HL_5TBW_054 | NA HL_46891.3* | ||
1/1/2633:2645 | homologous HL_5TBW_055 | NA HL_19870.5* | ||
1/1/2673:2681 | homologous HL_5TBW_056 | NA HL_76406.3* | ||
1/1/2693:2700 | homologous HL_5TBW_057 | NA HL_46142.8* | ||
1/1/2724:2732 | homologous HL_5TBW_058 | NA HL_14725.1* | ||
1/1/2744:2749 | GNRA homologous HL_5TBW_059 | NA HL_43074.18* | ||
1/1/2776:2784 | homologous HL_5TBW_060 | NA HL_46142.8* | ||
1/1/2840:2848 | homologous HL_5TBW_061 | NA HL_36421.5* | ||
1/1/2897:2904 | homologous HL_5TBW_062 | NA HL_92681.5* | ||
1/1/2920:2926 | homologous HL_5TBW_063 | NA HL_26055.6* | ||
1/1/2963:2968 | GNRA homologous HL_5TBW_064 | NA HL_43074.18* | ||
1/1/3025:3030 | GNRA homologous HL_5TBW_065 | NA HL_43074.18* | ||
1/1/3068:3073 | Ribsomal LSU H95 homologous HL_5TBW_066 | NA HL_67719.1* | ||
1/1/3110:3124 | homologous HL_5TBW_067 | NA HL_56677.5* | ||
1/1/3194:3197 | geometric HL_5TBW_068 | NA HL_46546.1* | ||
1/1/3240:3247 | homologous HL_5TBW_069 | NA HL_27757.1* | ||
1/1/3303:3311 | homologous HL_5TBW_070 | NA HL_05018.6* | ||
1/1/3350:3353 | geometric HL_5TBW_071 | NA HL_69353.7* | ||
1/2/7:17 | homologous HL_4V88_186 | NA HL_67265.4* | ||
1/2/70:81 | homologous HL_4V88_187 | NA HL_07268.1* | ||
1/2/154:160 | Other HL homologous HL_4V88_188 | NA HL_43074.18* | ||
1/2/190:195 | homologous HL_4V88_189 | NA HL_39228.1* | ||
1/2/228:237 | NA | NA | ||
1/2/243:250 | T-loop with 1 bulged base homologous HL_4V88_191 | NA HL_68493.6* | ||
1/2/276:279 | geometric HL_4WF9_037 | NA HL_69353.7* | ||
1/2/330:338 | homologous HL_4V88_193 | NA HL_93727.5* | ||
1/2/368:373 | homologous HL_4V88_194 | NA HL_18785.1* | ||
1/2/393:404 | homologous HL_4V88_195 | NA HL_22443.1* | ||
1/2/414:419 | UNCG homologous HL_4V88_196 | NA HL_79299.11* | ||
1/2/450:456 | homologous HL_4V88_197 | NA HL_50374.1* | ||
1/2/486:501 | NA | NA | ||
1/2/520:532 | homologous HL_4V88_199 | NA HL_17086.2* | ||
1/2/569:574 | Other HL homologous HL_4V88_200 | NA HL_43074.18* | ||
1/2/652:665 | NA | NA | ||
1/2/686:718 | NA | NA | ||
1/2/747:755 | homologous HL_4V88_203 | NA HL_72066.1* | ||
1/2/760:766 | geometric HL_1WZ2_007 | NA HL_05692.1* | ||
1/2/812:826 | homologous HL_4V88_205 | NA HL_03603.1* | ||
1/2/883:892 | homologous HL_4V88_206 | NA HL_87219.4* | ||
1/2/920:925 | Other HL homologous HL_4V88_207 | NA HL_43074.18* | ||
1/2/980:990 | homologous HL_4V88_208 | NA HL_87219.4* | ||
1/2/1038:1047 | NA | NA | ||
1/2/1067:1072 | Other HL homologous HL_4V88_210 | NA HL_43074.18* | ||
1/2/1104:1109 | GNRA homologous HL_4V88_211 | NA HL_43074.18* | ||
1/2/1171:1180 | homologous HL_4V88_212 | NA HL_96854.1* | ||
1/2/1221:1230 | homologous HL_4V88_213 | NA HL_30819.1* | ||
1/2/1279:1284 | GNRA homologous HL_4V88_214 | NA HL_43074.18* | ||
1/2/1292:1299 | homologous HL_4V88_215 | NA HL_54035.7* | ||
1/2/1342:1347 | homologous HL_4V88_216 | NA HL_82678.2* | ||
1/2/1379:1385 | homologous HL_4V88_217 | NA HL_67216.5* | ||
1/2/1484:1489 | GNRA homologous HL_4V88_218 | NA HL_43074.18* | ||
1/2/1533:1544 | homologous HL_4V88_219 | NA HL_32458.3* | ||
1/2/1577:1585 | homologous HL_4V88_220 | NA HL_01181.4* | ||
1/2/1761:1766 | Other HL homologous HL_4V88_222 | NA HL_43074.18* | ||
1/3/36:41 | NA | NA | ||
1/3/88:93 | NA | NA | ||
1/4/73:78 | Other HL homologous HL_5TBW_074 | NA HL_02361.6* | ||
1/4/108:114 | homologous HL_5TBW_075 | NA HL_06569.2* | ||
1/4/124:129 | homologous HL_5TBW_076 | NA HL_60357.1* | ||
1/5/31:53 | NA | NA | ||
1/5/69:74 | homologous HL_5TBW_002 | NA HL_96776.3* | ||
1/5/90:96 | homologous HL_5TBW_003 | NA HL_67216.5* | ||
1/5/132:136 | homologous HL_5TBW_004 | NA HL_36982.3* | ||
1/5/194:201 | T-loop with 1 bulged base homologous HL_5TBW_005 | NA HL_68493.6* | ||
1/5/208:212 | homologous HL_5TBW_006 | NA HL_98557.5* | ||
1/5/216:224 | homologous HL_5TBW_007 | NA HL_08002.6* | ||
1/5/278:287 | homologous HL_5TBW_008 | NA HL_54035.7* | ||
1/5/303:312 | homologous HL_5TBW_009 | NA HL_46142.8* | ||
1/5/357:362 | Other HL homologous HL_5TBW_010 | NA HL_43074.18* | ||
1/5/382:387 | GNRA homologous HL_5TBW_011 | NA HL_43074.18* | ||
1/5/543:548 | geometric HL_1U1Y_001 | NA HL_16568.1* | ||
1/5/599:604 | GNRA homologous HL_5TBW_013 | NA HL_43074.18* | ||
1/5/640:649 | T-loop with 2 stacked bulged bases homologous HL_5TBW_014 | NA HL_33239.17* | ||
1/5/686:694 | homologous HL_5TBW_015 | NA HL_80105.3* | ||
1/5/707:712 | GNRA homologous HL_5TBW_016 | NA HL_43074.18* | ||
1/5/732:737 | GNRA homologous HL_5TBW_017 | NA HL_43074.18* | ||
1/5/763:768 | homologous HL_5TBW_018 | NA HL_00996.1* | ||
1/5/844:849 | GNRA homologous HL_5TBW_019 | NA HL_43074.18* | ||
1/5/876:885 | homologous HL_5TBW_020 | NA HL_39334.5* | ||
1/5/910:918 | homologous HL_5TBW_021 | NA HL_05832.1* | ||
1/5/958:963 | homologous HL_5TBW_022 | NA HL_15942.5* | ||
1/5/1023:1029 | NA | NA | ||
1/5/1076:1083 | homologous HL_5TBW_024 | NA HL_54035.7* | ||
1/5/1126:1132 | GNRA homologous HL_5TBW_025 | NA HL_43074.18* | ||
1/5/1148:1155 | homologous HL_5TBW_026 | NA HL_72451.5* | ||
1/5/1238:1250 | NA | NA | ||
1/5/1267:1274 | geometric HL_5D8H_002 | NA HL_93727.5* | ||
1/5/1347:1357 | homologous HL_5TBW_141 | NA | ||
1/5/1403:1408 | GNRA homologous HL_5TBW_030 | NA HL_43074.18* | ||
1/5/1462:1470 | T-loop with 2 stacked bulged bases homologous HL_5TBW_031 | NA HL_33239.17* | ||
1/5/1506:1512 | homologous HL_5TBW_032 | NA HL_86880.5* | ||
1/5/1544:1549 | Other HL homologous HL_5TBW_033 | NA HL_43074.18* | ||
1/5/1599:1608 | homologous HL_5TBW_035 | NA HL_78457.4* | ||
1/5/1634:1639 | GNRA homologous HL_5TBW_036 | NA HL_43074.18* | ||
1/5/1680:1688 | homologous HL_5TBW_037 | NA HL_73793.2* | ||
1/5/1719:1725 | homologous HL_5TBW_038 | NA HL_00923.1* | ||
1/5/1758:1767 | NA | NA | ||
1/5/1792:1796 | homologous HL_5TBW_040 | NA HL_69353.7* | ||
1/5/1844:1851 | homologous HL_5TBW_041 | NA HL_66171.3* | ||
1/5/1862:1868 | GNRA with one bulged base homologous HL_5TBW_042 | NA HL_02361.6* | ||
1/5/1923:1928 | UNCG homologous HL_5TBW_043 | NA HL_79299.11* | ||
1/5/1952:2094 | NA | NA | ||
1/5/2110:2114 | homologous HL_5TBW_045 | NA HL_99223.1* | ||
1/5/2135:2145 | homologous HL_5TBW_046 | NA HL_43613.4* | ||
1/5/2164:2170 | GNRA homologous HL_5TBW_047 | NA HL_43074.18* | ||
1/5/2220:2225 | Other HL homologous HL_5TBW_048 | NA HL_43074.18* | ||
1/5/2253:2263 | homologous HL_5TBW_049 | NA HL_98248.1* | ||
1/5/2292:2300 | homologous HL_5TBW_050 | NA HL_53760.4* | ||
1/5/2369:2378 | homologous HL_5TBW_051 | NA HL_90642.5* | ||
1/5/2437:2510 | NA | NA | ||
1/5/2535:2544 | NA | NA | ||
1/5/2568:2573 | geometric HL_5TBW_022 | NA HL_15942.5* | ||
1/5/2616:2624 | homologous HL_5TBW_054 | NA HL_46891.3* | ||
1/5/2633:2645 | homologous HL_5TBW_055 | NA HL_19870.5* | ||
1/5/2673:2681 | homologous HL_5TBW_056 | NA HL_76406.3* | ||
1/5/2693:2700 | homologous HL_5TBW_057 | NA HL_46142.8* | ||
1/5/2724:2732 | homologous HL_5TBW_058 | NA HL_14725.1* | ||
1/5/2744:2749 | GNRA homologous HL_5TBW_059 | NA HL_43074.18* | ||
1/5/2776:2784 | homologous HL_5TBW_060 | NA HL_46142.8* | ||
1/5/2840:2848 | homologous HL_5TBW_061 | NA HL_36421.5* | ||
1/5/2897:2904 | homologous HL_5TBW_062 | NA HL_92681.5* | ||
1/5/2920:2926 | homologous HL_5TBW_063 | NA HL_26055.6* | ||
1/5/2963:2968 | GNRA homologous HL_5TBW_064 | NA HL_43074.18* | ||
1/5/3025:3030 | GNRA homologous HL_5TBW_065 | NA HL_43074.18* | ||
1/5/3068:3073 | Ribsomal LSU H95 homologous HL_5TBW_066 | NA HL_67719.1* | ||
1/5/3110:3124 | homologous HL_5TBW_067 | NA HL_56677.5* | ||
1/5/3193:3199 | Other HL geometric HL_5J7L_200 | NA HL_96776.3* | ||
1/5/3240:3247 | homologous HL_5TBW_069 | NA HL_27757.1* | ||
1/5/3303:3311 | homologous HL_5TBW_070 | NA HL_05018.6* | ||
1/5/3350:3353 | homologous HL_5TBW_071 | NA HL_69353.7* | ||
1/6/7:17 | NA | NA | ||
1/6/154:160 | Other HL homologous HL_4V88_188 | NA HL_43074.18* | ||
1/6/190:195 | homologous HL_4V88_189 | NA HL_39228.1* | ||
1/6/243:250 | T-loop with 1 bulged base homologous HL_4V88_191 | NA HL_68493.6* | ||
1/6/276:279 | geometric HL_4V88_192 | NA HL_69353.7* | ||
1/6/330:338 | homologous HL_4V88_193 | NA HL_93727.5* | ||
1/6/368:373 | homologous HL_4V88_194 | NA HL_18785.1* | ||
1/6/393:404 | homologous HL_4V88_195 | NA HL_22443.1* | ||
1/6/414:419 | UNCG geometric HL_4V88_196 | NA HL_79299.11* | ||
1/6/450:456 | homologous HL_4V88_197 | NA HL_50374.1* | ||
1/6/520:532 | geometric HL_4V88_199 | NA HL_17086.2* | ||
1/6/569:574 | Other HL homologous HL_4V88_200 | NA HL_43074.18* | ||
1/6/764:772 | homologous HL_4V88_203 | NA HL_72066.1* | ||
1/6/777:783 | homologous HL_4V88_204 | NA HL_83225.1* | ||
1/6/829:843 | homologous HL_4V88_205 | NA HL_03603.1* | ||
1/6/900:909 | homologous HL_4V88_206 | NA HL_87219.4* | ||
1/6/937:942 | Other HL homologous HL_4V88_207 | NA HL_43074.18* | ||
1/6/997:1007 | homologous HL_4V88_208 | NA HL_87219.4* | ||
1/6/1055:1064 | homologous HL_4V88_209 | NA HL_32255.1* | ||
1/6/1084:1089 | Other HL homologous HL_4V88_210 | NA HL_43074.18* | ||
1/6/1121:1126 | GNRA homologous HL_4V88_211 | NA HL_43074.18* | ||
1/6/1188:1197 | homologous HL_4V88_212 | NA HL_96854.1* | ||
1/6/1238:1247 | homologous HL_4V88_213 | NA HL_30819.1* | ||
1/6/1296:1301 | GNRA homologous HL_4V88_214 | NA HL_43074.18* | ||
1/6/1309:1316 | homologous HL_4V88_215 | NA HL_54035.7* | ||
1/6/1359:1364 | homologous HL_4V88_216 | NA HL_82678.2* | ||
1/6/1396:1402 | homologous HL_4V88_217 | NA HL_67216.5* | ||
1/6/1501:1506 | GNRA homologous HL_4V88_218 | NA HL_43074.18* | ||
1/6/1550:1561 | homologous HL_4V88_219 | NA HL_32458.3* | ||
1/6/1594:1602 | homologous HL_4V88_220 | NA HL_01181.4* | ||
1/6/1778:1783 | Other HL homologous HL_4V88_222 | NA HL_43074.18* | ||
1/7/36:41 | NA | NA | ||
1/7/88:93 | NA | NA | ||
1/8/69:89 | NA | NA | ||
1/8/108:114 | homologous HL_5TBW_075 | NA HL_06569.2* | ||
1/8/124:129 | homologous HL_5TBW_076 | NA HL_60357.1* |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_5TGM_034 | homologous HL_5TBW_034 | ||
HL_5TGM_108 | NA | ||
HL_5TGM_110 | NA | ||
HL_5TGM_149 | NA | ||
HL_5TGM_189 | homologous HL_4V88_187 | ||
HL_5TGM_192 | homologous HL_4V88_190 | ||
HL_5TGM_200 | NA | ||
HL_5TGM_203 | NA | ||
HL_5TGM_204 | NA | ||
HL_5TGM_223 | NA |
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/1/3:4, 1/4/155:156 | NA | NA | ||
1/1/7:8, 1/4/150:152 | Single bulged C homologous IL_5TBW_002 | NA IL_61258.10* | ||
1/1/13:15, 1/4/144:145 | Single bulged U homologous IL_5TBW_003 | NA IL_83039.11* | ||
1/1/27:28, 1/1/56:58 | Single stack bend homologous IL_5TBW_004 | NA IL_04038.4* | ||
1/1/31:38, 1/1/45:53 | tSH-tHW-tHH-tHS geometric IL_5TBW_005 | NA IL_22863.1* | ||
1/1/82:89, 1/1/97:103 | homologous IL_5TBW_006 | NA IL_29509.1* | ||
1/1/123:124, 1/1/144:149 | homologous IL_5TBW_007 | NA IL_19724.1* | ||
1/1/125:127, 1/1/141:143 | homologous IL_5TBW_008 | NA IL_01312.13* | ||
1/1/163:166, 1/1/256:258 | Other IL geometric IL_5TBW_064 | NA IL_87630.5* | ||
1/1/169:170, 1/1/248:253 | homologous IL_5TBW_010 | NA IL_76195.1* | ||
1/1/177:179, 1/1/237:241 | Major groove platform with extra pair homologous IL_5TBW_011 | NA IL_87630.5* | ||
1/1/189:191, 1/1/204:205 | Single bulged U homologous IL_5TBW_012 | NA IL_83039.11* | ||
1/1/337:339, 1/4/25:26 | Single bulged A homologous IL_5TBW_013 | NA IL_80007.16* | ||
1/1/376:379, 1/1/390:403 | homologous IL_5TBW_014 | NA IL_60992.5* | ||
1/1/404:410, 1/4/13:19 | Triple sheared with non-canonical cWW homologous IL_5TBW_015 | NA IL_66414.5* | ||
1/1/429:431, 1/1/628:630 | homologous IL_5TBW_016 | NA IL_01312.13* | ||
1/1/435:495, 1/1/618:624 | homologous IL_5TBW_017 | NA IL_33557.1* | ||
1/1/512:513, 1/1/577:579 | Single bulged A homologous IL_5TBW_018 | NA IL_40508.4* | ||
1/1/517:525, 1/1/567:573 | homologous IL_5TBW_019 | NA IL_41593.1* | ||
1/1/531:538, 1/1/553:561 | homologous IL_5TBW_020 | NA IL_94501.1* | ||
1/1/668:670, 1/1/792:794 | homologous IL_5TBW_021 | NA IL_01312.13* | ||
1/1/680:684, 1/1/696:700 | homologous IL_5TBW_022 | NA IL_92343.1* | ||
1/1/725:728, 1/1/741:745 | UAA/GAN homologous IL_5TBW_023 | NA IL_53523.5* | ||
1/1/752:753, 1/1/779:781 | Single bulged A homologous IL_5TBW_024 | NA IL_80007.16* | ||
1/1/755:756, 1/1/775:777 | Single bulged U homologous IL_5TBW_025 | NA IL_83039.11* | ||
1/1/758:763, 1/1/768:773 | geometric IL_5TBW_026 | NA IL_19954.1* | ||
1/1/803:805, 1/1/938:940 | homologous IL_5TBW_027 | NA IL_01312.13* | ||
1/1/805:809, 1/1/931:938 | geometric IL_5TBW_028 | NA IL_17470.5* | ||
1/1/833:834, 1/1/859:861 | Single bulged G geometric IL_5TBW_029 | NA IL_99645.1* | ||
1/1/834:838, 1/1/855:859 | Triple sheared homologous IL_5TBW_030 | NA IL_56467.6* | ||
1/1/869:872, 1/1/888:890 | Major groove platform with extra cWW homologous IL_5TBW_031 | NA IL_95485.6* | ||
1/1/873:875, 1/1/886:887 | Single bulged U homologous IL_5TBW_032 | NA IL_83039.11* | ||
1/1/907:909, 1/1/919:923 | Multiple bulged bases homologous IL_5TBW_033 | NA IL_90991.5* | ||
1/1/954:956, 1/1/965:967 | homologous IL_5TBW_034 | NA IL_01312.13* | ||
1/1/969:970, 1/1/1111:1113 | Single stack bend homologous IL_5TBW_035 | NA IL_04038.4* | ||
1/1/977:981, 1/1/1102:1104 | homologous IL_5TBW_036 | NA IL_67474.3* | ||
1/1/983:985, 1/1/1099:1100 | Single bulged G homologous IL_5TBW_037 | NA IL_59137.10* | ||
1/1/991:997, 1/1/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge geometric IL_5TBW_038 | NA IL_93830.2* | ||
1/1/997:998, 1/1/1050:1052 | Minor groove platform homologous IL_5TBW_039 | NA IL_06437.11* | ||
1/1/999:1004, 1/1/1046:1049 | C-loop homologous IL_5TBW_040 | NA IL_63596.4* | ||
1/1/1005:1009, 1/1/1041:1045 | NA | NA | ||
1/1/1009:1011, 1/1/1039:1041 | geometric IL_5TBW_042 | NA IL_01312.13* | ||
1/1/1013:1018, 1/1/1034:1037 | Other IL homologous IL_5TBW_043 | NA IL_08757.3* | ||
1/1/1069:1071, 1/1/1087:1089 | homologous IL_5TBW_044 | NA IL_01312.13* | ||
1/1/1074:1076, 1/1/1083:1084 | Single bulged A homologous IL_5TBW_045 | NA IL_80007.16* | ||
1/1/1120:1122, 1/1/1136:1138 | homologous IL_5TBW_046 | NA IL_01312.13* | ||
1/1/1123:1125, 1/1/1133:1135 | Isolated cWS basepair homologous IL_5TBW_047 | NA IL_67621.5* | ||
1/1/1167:1171, 1/1/1328:1332 | UAA/GAN homologous IL_5TBW_048 | NA IL_53523.5* | ||
1/1/1173:1180, 1/1/1325:1326 | SSU/LSU pseudoknot homologous IL_5TBW_049 | NA IL_15861.6* | ||
1/1/1180:1182, 1/1/1324:1325 | Single bulged U geometric IL_5TBW_050 | NA IL_83039.11* | ||
1/1/1187:1194, 1/1/1314:1319 | geometric IL_5TBW_051 | NA IL_17971.1* | ||
1/1/1194:1205, 1/1/1299:1314 | homologous IL_5TBW_052 | NA IL_94878.1* | ||
1/1/1207:1209, 1/1/1296:1297 | Single bulged U homologous IL_5TBW_053 | NA IL_83039.11* | ||
1/1/1218:1226, 1/1/1283:1287 | Kink-turn homologous IL_5TBW_054 | NA IL_90538.3* | ||
1/1/1234:1239, 1/1/1249:1254 | NA | NA | ||
1/1/1262:1266, 1/1/1275:1277 | Major groove platform with extra cWW geometric IL_5TBW_056 | NA IL_95485.6* | ||
1/1/1376:1378, 1/1/1428:1431 | Isolated cWS basepair homologous IL_5TBW_057 | NA IL_01312.13* | ||
1/1/1385:1387, 1/1/1420:1421 | Single bulged A homologous IL_5TBW_058 | NA IL_80007.16* | ||
1/1/1388:1395, 1/1/1415:1419 | Kink-turn homologous IL_5TBW_059 | NA IL_29549.9* | ||
1/1/1398:1400, 1/1/1411:1412 | Single bulged A homologous IL_5TBW_060 | NA IL_80007.16* | ||
1/1/1444:1450, 1/1/2354:2359 | 7x6 Sarcin-Ricin; G-bulge homologous IL_5TBW_061 | NA IL_35110.5* | ||
1/1/1500:1505, 1/1/1513:1516 | homologous IL_5TBW_062 | NA IL_47743.1* | ||
1/1/1532:1536, 1/1/1585:1590 | UAA/GAN homologous IL_5TBW_063 | NA IL_53523.5* | ||
1/1/1618:1621, 1/1/1824:1826 | Other IL homologous IL_5TBW_064 | NA IL_87630.5* | ||
1/1/1623:1626, 1/1/1817:1822 | Multiple bulged bases with near cWW homologous IL_5TBW_065 | NA IL_51087.2* | ||
1/1/1627:1631, 1/1/1811:1816 | geometric IL_5TBW_066 | NA IL_74736.1* | ||
1/1/1645:1649, 1/1/1806:1810 | Triple sheared geometric IL_5TBW_067 | NA IL_56467.6* | ||
1/1/1661:1663, 1/1/1786:1788 | homologous IL_5TBW_068 | NA IL_01312.13* | ||
1/1/1669:1670, 1/1/1778:1780 | Single bulged C geometric IL_5TBW_069 | NA IL_61258.10* | ||
1/1/1670:1671, 1/1/1776:1778 | Single stack bend homologous IL_5TBW_070 | NA IL_72766.2* | ||
1/1/1694:1698, 1/1/1747:1752 | homologous IL_5TBW_071 | NA IL_14397.1* | ||
1/1/1702:1707, 1/1/1737:1743 | homologous IL_5TBW_072 | NA IL_98876.1* | ||
1/1/1711:1717, 1/1/1727:1733 | Kink-turn homologous IL_5TBW_073 | NA IL_76900.1* | ||
1/1/1883:1889, 1/1/2346:2349 | homologous IL_5TBW_074 | NA IL_79393.8* | ||
1/1/1895:1897, 1/1/2338:2340 | Isolated tWW turn homologous IL_5TBW_075 | NA IL_54997.5* | ||
1/1/1898:1901, 1/1/2336:2337 | Major groove platform; stack outside cWW geometric IL_5TBW_076 | NA IL_80663.10* | ||
1/1/1901:1906, 1/1/2333:2336 | Intercalated tWH homologous IL_5TBW_077 | NA IL_98882.3* | ||
1/1/1918:1923, 1/1/1928:1934 | tSH-tSH-tHH-tHS geometric IL_5TBW_078 | NA IL_66584.5* | ||
1/1/1940:1942, 1/1/2106:2108 | homologous IL_5TBW_079 | NA IL_01312.13* | ||
1/1/1947:1948, 1/1/2098:2101 | homologous IL_5TBW_080 | NA IL_76195.1* | ||
1/1/1949:1953, 1/1/2094:2097 | NA | NA | ||
1/1/2128:2129, 1/1/2323:2325 | Single bulged A homologous IL_5TBW_082 | NA IL_80007.16* | ||
1/1/2156:2161, 1/1/2173:2180 | Kink-turn related homologous IL_5TBW_083 | NA IL_95993.1* | ||
1/1/2196:2199, 1/1/2245:2246 | Major groove outside cWW, minor groove, intercalation pocket homologous IL_5TBW_084 | NA IL_72766.2* | ||
1/1/2200:2201, 1/1/2241:2244 | Major groove outside cWW, minor groove, intercalation pocket homologous IL_5TBW_085 | NA IL_13730.12* | ||
1/1/2204:2206, 1/1/2237:2238 | Single bulged U homologous IL_5TBW_086 | NA IL_21340.1* | ||
1/1/2206:2210, 1/1/2235:2237 | Major groove platform with extra pair geometric IL_5TBW_087 | NA IL_87630.5* | ||
1/1/2211:2217, 1/1/2228:2234 | homologous IL_5TBW_088 | NA IL_36973.5* | ||
1/1/2276:2277, 1/1/2307:2310 | Multiple bulged bases geometric IL_5TBW_089 | NA IL_69632.1* | ||
1/1/2277:2288, 1/1/2304:2307 | homologous IL_5TBW_090 | NA IL_45481.1* | ||
1/1/2391:2394, 1/1/2986:2988 | Major groove platform with extra pair homologous IL_5TBW_091 | NA IL_87630.5* | ||
1/1/2396:2398, 1/1/2981:2984 | Minor groove platform with intercalation homologous IL_5TBW_092 | NA IL_86964.1* | ||
1/1/2409:2411, 1/1/2811:2812 | Single bulged U homologous IL_5TBW_093 | NA IL_83039.11* | ||
1/1/2412:2413, 1/1/2807:2810 | Minor groove platform homologous IL_5TBW_094 | NA IL_06437.11* | ||
1/1/2423:2425, 1/1/2604:2607 | Isolated tHS basepair with bulges homologous IL_5TBW_095 | NA IL_38958.6* | ||