5TGM Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5TGM_001 | 1/1/38:45 | No text annotation Not in a motif group | homologous HL_5TBW_001 HL_06192.2 | |
| HL_5TGM_002 | 1/1/69:74 | No text annotation Not in a motif group | homologous HL_5TBW_002 HL_02862.2 | |
| HL_5TGM_003 | 1/1/90:96 | No text annotation Not in a motif group | homologous HL_5TBW_003 HL_67216.7 | |
| HL_5TGM_004 | 1/1/132:136 | No text annotation Not in a motif group | homologous HL_5TBW_004 HL_98426.1 | |
| HL_5TGM_005 | 1/1/194:201 | T-loop with 1 bulged base Not in a motif group | homologous HL_5TBW_005 HL_89380.2 | |
| HL_5TGM_006 | 1/1/208:212 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
| HL_5TGM_007 | 1/1/216:224 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.8 | |
| HL_5TGM_008 | 1/1/278:287 | No text annotation Not in a motif group | homologous HL_5TBW_008 HL_71554.2 | |
| HL_5TGM_009 | 1/1/303:312 | No text annotation Not in a motif group | homologous HL_5TBW_009 HL_12078.2 | |
| HL_5TGM_010 | 1/1/357:362 | No text annotation Not in a motif group | homologous HL_8C3A_010 HL_42097.1 | |
| HL_5TGM_011 | 1/1/382:387 | GNRA Not in a motif group | homologous HL_5TBW_011 HL_42097.1 | |
| HL_5TGM_012 | 1/1/541:550 | No text annotation Not in a motif group | ||
| HL_5TGM_013 | 1/1/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_42097.1 | |
| HL_5TGM_014 | 1/1/639:650 | No text annotation Not in a motif group | geometric HL_4V7M_040 HL_22031.1 | |
| HL_5TGM_015 | 1/1/686:694 | No text annotation Not in a motif group | homologous HL_5TBW_015 HL_03345.1 | |
| HL_5TGM_016 | 1/1/707:712 | No text annotation Not in a motif group | homologous HL_8C3A_016 HL_42097.1 | |
| HL_5TGM_017 | 1/1/732:737 | GNRA Not in a motif group | homologous HL_5TBW_017 HL_42097.1 | |
| HL_5TGM_018 | 1/1/763:768 | No text annotation Not in a motif group | homologous HL_5TBW_018 HL_34168.2 | |
| HL_5TGM_019 | 1/1/844:849 | GNRA Not in a motif group | homologous HL_5TBW_019 HL_42097.1 | |
| HL_5TGM_020 | 1/1/876:885 | No text annotation Not in a motif group | homologous HL_5TBW_020 HL_39334.6 | |
| HL_5TGM_021 | 1/1/910:918 | No text annotation Not in a motif group | homologous HL_5TBW_021 HL_33817.1 | |
| HL_5TGM_022 | 1/1/958:963 | No text annotation Not in a motif group | homologous HL_5TBW_022 HL_94803.1 | |
| HL_5TGM_023 | 1/1/1023:1029 | GNRA Not in a motif group | homologous HL_5TBW_023 HL_42097.1 | |
| HL_5TGM_024 | 1/1/1076:1083 | No text annotation Not in a motif group | geometric HL_5TBW_024 HL_71554.2 | |
| HL_5TGM_025 | 1/1/1126:1132 | GNRA Not in a motif group | homologous HL_5TBW_025 HL_42097.1 | |
| HL_5TGM_026 | 1/1/1148:1155 | No text annotation Not in a motif group | homologous HL_8C3A_026 HL_64430.2 | |
| HL_5TGM_027 | 1/1/1239:1249 | No text annotation Not in a motif group | homologous HL_5TBW_027 HL_07145.1 | |
| HL_5TGM_028 | 1/1/1266:1275 | No text annotation Not in a motif group | homologous HL_5TBW_028 HL_09136.1 | |
| HL_5TGM_029 | 1/1/1347:1357 | No text annotation Not in a motif group | homologous HL_5TBW_029 HL_89098.1 | |
| HL_5TGM_030 | 1/1/1403:1408 | GNRA Not in a motif group | homologous HL_5TBW_030 HL_42097.1 | |
| HL_5TGM_031 | 1/1/1462:1470 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_031 HL_89380.2 | |
| HL_5TGM_032 | 1/1/1506:1512 | No text annotation Not in a motif group | homologous HL_5TBW_032 HL_46680.1 | |
| HL_5TGM_033 | 1/1/1544:1549 | Other HL Not in a motif group | homologous HL_5TBW_033 HL_76539.2 | |
| HL_5TGM_035 | 1/1/1599:1608 | No text annotation Not in a motif group | homologous HL_5TBW_035 HL_69023.2 | |
| HL_5TGM_036 | 1/1/1634:1639 | GNRA Not in a motif group | homologous HL_5TBW_036 HL_42097.1 | |
| HL_5TGM_037 | 1/1/1680:1688 | No text annotation Not in a motif group | homologous HL_5TBW_037 HL_60812.1 | |
| HL_5TGM_038 | 1/1/1719:1725 | No text annotation Not in a motif group | homologous HL_5TBW_038 HL_86373.2 | |
| HL_5TGM_039 | 1/1/1758:1767 | No text annotation Not in a motif group | ||
| HL_5TGM_040 | 1/1/1792:1796 | No text annotation Not in a motif group | homologous HL_5TBW_040 HL_38927.2 | |
| HL_5TGM_041 | 1/1/1844:1851 | No text annotation Not in a motif group | homologous HL_5TBW_041 HL_64430.2 | |
| HL_5TGM_042 | 1/1/1862:1868 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_42097.1 | |
| HL_5TGM_043 | 1/1/1923:1928 | UNCG Not in a motif group | homologous HL_5TBW_043 HL_03562.2 | |
| HL_5TGM_044 | 1/1/1953:2094 | No text annotation Not in a motif group | geometric HL_5TBW_044 HL_09829.1 | |
| HL_5TGM_045 | 1/1/2110:2114 | No text annotation Not in a motif group | homologous HL_5TBW_045 HL_20062.1 | |
| HL_5TGM_046 | 1/1/2135:2145 | No text annotation Not in a motif group | homologous HL_5TBW_046 HL_43613.5 | |
| HL_5TGM_047 | 1/1/2164:2170 | GNRA Not in a motif group | homologous HL_5TBW_047 HL_42097.1 | |
| HL_5TGM_048 | 1/1/2220:2225 | Other HL Not in a motif group | homologous HL_5TBW_048 HL_42097.1 | |
| HL_5TGM_049 | 1/1/2253:2263 | No text annotation Not in a motif group | homologous HL_5TBW_049 HL_71924.2 | |
| HL_5TGM_050 | 1/1/2292:2300 | No text annotation Not in a motif group | homologous HL_5TBW_050 HL_51824.1 | |
| HL_5TGM_051 | 1/1/2369:2378 | No text annotation Not in a motif group | homologous HL_5TBW_051 HL_90642.6 | |
| HL_5TGM_052 | 1/1/2441:2506 | No text annotation Not in a motif group | homologous HL_5TBW_052 HL_66226.1 | |
| HL_5TGM_053 | 1/1/2533:2546 | No text annotation Not in a motif group | ||
| HL_5TGM_054 | 1/1/2568:2573 | No text annotation Not in a motif group | homologous HL_5TBW_053 HL_30239.1 | |
| HL_5TGM_055 | 1/1/2616:2624 | No text annotation Not in a motif group | geometric HL_5TBW_054 HL_53171.2 | |
| HL_5TGM_056 | 1/1/2633:2645 | No text annotation Not in a motif group | homologous HL_5TBW_055 HL_19870.6 | |
| HL_5TGM_057 | 1/1/2673:2681 | No text annotation Not in a motif group | homologous HL_5TBW_056 HL_76406.4 | |
| HL_5TGM_058 | 1/1/2693:2700 | No text annotation Not in a motif group | homologous HL_5TBW_057 HL_12078.2 | |
| HL_5TGM_059 | 1/1/2724:2732 | No text annotation Not in a motif group | homologous HL_5TBW_058 HL_92229.2 | |
| HL_5TGM_060 | 1/1/2744:2749 | GNRA Not in a motif group | homologous HL_5TBW_059 HL_42097.1 | |
| HL_5TGM_061 | 1/1/2776:2784 | No text annotation Not in a motif group | homologous HL_5TBW_060 HL_96598.1 | |
| HL_5TGM_062 | 1/1/2840:2848 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_06192.2 | |
| HL_5TGM_063 | 1/1/2897:2904 | No text annotation Not in a motif group | homologous HL_8C3A_063 HL_88526.2 | |
| HL_5TGM_064 | 1/1/2920:2926 | No text annotation Not in a motif group | homologous HL_5TBW_063 HL_43656.2 | |
| HL_5TGM_065 | 1/1/2963:2968 | GNRA Not in a motif group | homologous HL_5TBW_064 HL_42097.1 | |
| HL_5TGM_066 | 1/1/3025:3030 | GNRA Not in a motif group | homologous HL_5TBW_065 HL_42097.1 | |
| HL_5TGM_067 | 1/1/3068:3073 | Ribsomal LSU H95 Not in a motif group | homologous HL_5TBW_066 HL_46680.1 | |
| HL_5TGM_068 | 1/1/3110:3124 | No text annotation Not in a motif group | homologous HL_5TBW_067 HL_56677.7 | |
| HL_5TGM_069 | 1/1/3194:3197 | No text annotation Not in a motif group | geometric HL_5TBW_068 HL_98426.1 | |
| HL_5TGM_070 | 1/1/3240:3247 | No text annotation Not in a motif group | homologous HL_5TBW_069 HL_14449.2 | |
| HL_5TGM_071 | 1/1/3303:3311 | No text annotation Not in a motif group | homologous HL_5TBW_070 HL_27930.1 | |
| HL_5TGM_072 | 1/1/3350:3353 | No text annotation Not in a motif group | geometric HL_5TBW_071 HL_53837.1 | |
| HL_5TGM_073 | 1/2/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_5TGM_074 | 1/2/70:81 | No text annotation Not in a motif group | homologous HL_4V88_187 HL_40069.1 | |
| HL_5TGM_075 | 1/2/154:160 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_5TGM_076 | 1/2/190:195 | No text annotation Not in a motif group | homologous HL_4V88_189 HL_77805.2 | |
| HL_5TGM_077 | 1/2/228:237 | No text annotation Not in a motif group | ||
| HL_5TGM_078 | 1/2/243:250 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_27930.1 | |
| HL_5TGM_079 | 1/2/276:279 | No text annotation Not in a motif group | geometric HL_4WF9_037 HL_94803.1 | |
| HL_5TGM_080 | 1/2/330:338 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.2 | |
| HL_5TGM_081 | 1/2/368:373 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_5TGM_082 | 1/2/393:404 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_5TGM_083 | 1/2/414:419 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
| HL_5TGM_084 | 1/2/450:456 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_5TGM_085 | 1/2/486:501 | No text annotation Not in a motif group | ||
| HL_5TGM_086 | 1/2/520:532 | No text annotation Not in a motif group | homologous HL_4V88_199 HL_06285.2 | |
| HL_5TGM_087 | 1/2/569:574 | Other HL Not in a motif group | homologous HL_4V88_200 HL_53845.1 | |
| HL_5TGM_088 | 1/2/652:665 | No text annotation Not in a motif group | ||
| HL_5TGM_089 | 1/2/686:718 | No text annotation Not in a motif group | ||
| HL_5TGM_090 | 1/2/747:755 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_5TGM_091 | 1/2/760:766 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
| HL_5TGM_092 | 1/2/812:826 | No text annotation Not in a motif group | homologous HL_4V88_205 HL_96598.1 | |
| HL_5TGM_093 | 1/2/883:892 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.1 | |
| HL_5TGM_094 | 1/2/920:925 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_5TGM_095 | 1/2/980:990 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_12326.1 | |
| HL_5TGM_096 | 1/2/1038:1047 | No text annotation Not in a motif group | ||
| HL_5TGM_097 | 1/2/1067:1072 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_5TGM_098 | 1/2/1104:1109 | GNRA Not in a motif group | homologous HL_4V88_211 HL_42097.1 | |
| HL_5TGM_099 | 1/2/1171:1180 | No text annotation Not in a motif group | homologous HL_4V88_212 HL_73530.2 | |
| HL_5TGM_100 | 1/2/1221:1230 | No text annotation Not in a motif group | homologous HL_4V88_213 HL_53597.2 | |
| HL_5TGM_101 | 1/2/1279:1284 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.1 | |
| HL_5TGM_102 | 1/2/1292:1299 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_5TGM_103 | 1/2/1342:1347 | No text annotation Not in a motif group | homologous HL_4V88_216 HL_10278.1 | |
| HL_5TGM_104 | 1/2/1379:1385 | No text annotation Not in a motif group | homologous HL_4V88_217 HL_42097.1 | |
| HL_5TGM_105 | 1/2/1484:1489 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
| HL_5TGM_106 | 1/2/1533:1544 | No text annotation Not in a motif group | homologous HL_4V88_219 HL_22554.1 | |
| HL_5TGM_107 | 1/2/1577:1585 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_60812.1 | |
| HL_5TGM_109 | 1/2/1761:1766 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 | |
| HL_5TGM_111 | 1/3/36:41 | No text annotation Not in a motif group | geometric HL_5TBW_185 HL_87939.1 | |
| HL_5TGM_112 | 1/3/88:93 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 | |
| HL_5TGM_113 | 1/4/73:78 | Other HL Not in a motif group | homologous HL_5TBW_074 HL_50142.2 | |
| HL_5TGM_114 | 1/4/108:114 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_87939.1 | |
| HL_5TGM_115 | 1/4/124:129 | No text annotation Not in a motif group | homologous HL_5TBW_076 HL_96851.2 | |
| HL_5TGM_116 | 1/5/31:53 | No text annotation Not in a motif group | ||
| HL_5TGM_117 | 1/5/69:74 | No text annotation Not in a motif group | homologous HL_5TBW_002 HL_02862.2 | |
| HL_5TGM_118 | 1/5/90:96 | No text annotation Not in a motif group | homologous HL_5TBW_003 HL_67216.7 | |
| HL_5TGM_119 | 1/5/132:136 | No text annotation Not in a motif group | homologous HL_5TBW_004 HL_98426.1 | |
| HL_5TGM_120 | 1/5/194:201 | T-loop with 1 bulged base Not in a motif group | homologous HL_5TBW_005 HL_89380.2 | |
| HL_5TGM_121 | 1/5/208:212 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
| HL_5TGM_122 | 1/5/216:224 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.8 | |
| HL_5TGM_123 | 1/5/278:287 | No text annotation Not in a motif group | homologous HL_5TBW_008 HL_71554.2 | |
| HL_5TGM_124 | 1/5/303:312 | No text annotation Not in a motif group | homologous HL_5TBW_009 HL_12078.2 | |
| HL_5TGM_125 | 1/5/357:362 | Other HL Not in a motif group | homologous HL_5TBW_010 HL_42097.1 | |
| HL_5TGM_126 | 1/5/382:387 | GNRA Not in a motif group | homologous HL_5TBW_011 HL_42097.1 | |
| HL_5TGM_127 | 1/5/543:548 | No text annotation Not in a motif group | geometric HL_1U1Y_001 HL_97896.2 | |
| HL_5TGM_128 | 1/5/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_42097.1 | |
| HL_5TGM_129 | 1/5/640:649 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_014 HL_89380.2 | |
| HL_5TGM_130 | 1/5/686:694 | No text annotation Not in a motif group | homologous HL_5TBW_015 HL_03345.1 | |
| HL_5TGM_131 | 1/5/707:712 | GNRA Not in a motif group | homologous HL_5TBW_016 HL_42097.1 | |
| HL_5TGM_132 | 1/5/732:737 | GNRA Not in a motif group | homologous HL_5TBW_017 HL_42097.1 | |
| HL_5TGM_133 | 1/5/763:768 | No text annotation Not in a motif group | geometric HL_5TBW_018 HL_34168.2 | |
| HL_5TGM_134 | 1/5/844:849 | GNRA Not in a motif group | homologous HL_5TBW_019 HL_42097.1 | |
| HL_5TGM_135 | 1/5/876:885 | No text annotation Not in a motif group | homologous HL_5TBW_020 HL_39334.6 | |
| HL_5TGM_136 | 1/5/910:918 | No text annotation Not in a motif group | homologous HL_8C3A_021 HL_33817.1 | |
| HL_5TGM_137 | 1/5/958:963 | No text annotation Not in a motif group | homologous HL_5TBW_022 HL_94803.1 | |
| HL_5TGM_138 | 1/5/1023:1029 | No text annotation Not in a motif group | ||
| HL_5TGM_139 | 1/5/1076:1083 | No text annotation Not in a motif group | homologous HL_5TBW_024 HL_71554.2 | |
| HL_5TGM_140 | 1/5/1126:1132 | GNRA Not in a motif group | homologous HL_5TBW_025 HL_42097.1 | |
| HL_5TGM_141 | 1/5/1148:1155 | No text annotation Not in a motif group | homologous HL_8C3A_026 HL_64430.2 | |
| HL_5TGM_142 | 1/5/1238:1250 | No text annotation Not in a motif group | ||
| HL_5TGM_143 | 1/5/1267:1274 | No text annotation Not in a motif group | homologous HL_8C3A_028 HL_84085.2 | |
| HL_5TGM_144 | 1/5/1347:1357 | No text annotation Not in a motif group | ||
| HL_5TGM_145 | 1/5/1403:1408 | GNRA Not in a motif group | homologous HL_5TBW_030 HL_42097.1 | |
| HL_5TGM_146 | 1/5/1462:1470 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_031 HL_89380.2 | |
| HL_5TGM_147 | 1/5/1506:1512 | No text annotation Not in a motif group | homologous HL_5TBW_032 HL_46680.1 | |
| HL_5TGM_148 | 1/5/1544:1549 | Other HL Not in a motif group | homologous HL_5TBW_033 HL_76539.2 | |
| HL_5TGM_150 | 1/5/1599:1608 | No text annotation Not in a motif group | homologous HL_5TBW_035 HL_69023.2 | |
| HL_5TGM_151 | 1/5/1634:1639 | GNRA Not in a motif group | homologous HL_5TBW_036 HL_42097.1 | |
| HL_5TGM_152 | 1/5/1680:1688 | No text annotation Not in a motif group | homologous HL_5TBW_037 HL_60812.1 | |
| HL_5TGM_153 | 1/5/1719:1725 | No text annotation Not in a motif group | homologous HL_5TBW_038 HL_86373.2 | |
| HL_5TGM_154 | 1/5/1758:1767 | No text annotation Not in a motif group | ||
| HL_5TGM_155 | 1/5/1792:1796 | No text annotation Not in a motif group | homologous HL_5TBW_040 HL_38927.2 | |
| HL_5TGM_156 | 1/5/1844:1851 | No text annotation Not in a motif group | homologous HL_5TBW_041 HL_64430.2 | |
| HL_5TGM_157 | 1/5/1862:1868 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_42097.1 | |
| HL_5TGM_158 | 1/5/1923:1928 | No text annotation Not in a motif group | homologous HL_8C3A_043 HL_03562.2 | |
| HL_5TGM_159 | 1/5/1952:2094 | No text annotation Not in a motif group | ||
| HL_5TGM_160 | 1/5/2110:2114 | No text annotation Not in a motif group | homologous HL_5TBW_045 HL_20062.1 | |
| HL_5TGM_161 | 1/5/2135:2145 | No text annotation Not in a motif group | homologous HL_8C3A_046 HL_43613.5 | |
| HL_5TGM_162 | 1/5/2164:2170 | GNRA Not in a motif group | homologous HL_5TBW_047 HL_42097.1 | |
| HL_5TGM_163 | 1/5/2220:2225 | Other HL Not in a motif group | homologous HL_5TBW_048 HL_42097.1 | |
| HL_5TGM_164 | 1/5/2253:2263 | No text annotation Not in a motif group | homologous HL_5TBW_049 HL_71924.2 | |
| HL_5TGM_165 | 1/5/2292:2300 | No text annotation Not in a motif group | homologous HL_5TBW_050 HL_51824.1 | |
| HL_5TGM_166 | 1/5/2369:2378 | No text annotation Not in a motif group | homologous HL_5TBW_051 HL_90642.6 | |
| HL_5TGM_167 | 1/5/2437:2510 | No text annotation Not in a motif group | ||
| HL_5TGM_168 | 1/5/2535:2544 | No text annotation Not in a motif group | ||
| HL_5TGM_169 | 1/5/2568:2573 | No text annotation Not in a motif group | geometric HL_5TBW_022 HL_94803.1 | |
| HL_5TGM_170 | 1/5/2616:2624 | No text annotation Not in a motif group | homologous HL_5TBW_054 HL_53171.2 | |
| HL_5TGM_171 | 1/5/2633:2645 | No text annotation Not in a motif group | homologous HL_5TBW_055 HL_19870.6 | |
| HL_5TGM_172 | 1/5/2673:2681 | No text annotation Not in a motif group | homologous HL_5TBW_056 HL_76406.4 | |
| HL_5TGM_173 | 1/5/2693:2700 | No text annotation Not in a motif group | homologous HL_5TBW_057 HL_12078.2 | |
| HL_5TGM_174 | 1/5/2724:2732 | No text annotation Not in a motif group | homologous HL_8C3A_059 HL_92229.2 | |
| HL_5TGM_175 | 1/5/2744:2749 | GNRA Not in a motif group | homologous HL_5TBW_059 HL_42097.1 | |
| HL_5TGM_176 | 1/5/2776:2784 | No text annotation Not in a motif group | homologous HL_8C3A_061 HL_96598.1 | |
| HL_5TGM_177 | 1/5/2840:2848 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_06192.2 | |
| HL_5TGM_178 | 1/5/2897:2904 | No text annotation Not in a motif group | homologous HL_5TBW_062 HL_88526.2 | |
| HL_5TGM_179 | 1/5/2920:2926 | No text annotation Not in a motif group | homologous HL_5TBW_063 HL_43656.2 | |
| HL_5TGM_180 | 1/5/2963:2968 | GNRA Not in a motif group | homologous HL_5TBW_064 HL_42097.1 | |
| HL_5TGM_181 | 1/5/3025:3030 | GNRA Not in a motif group | homologous HL_5TBW_065 HL_42097.1 | |
| HL_5TGM_182 | 1/5/3068:3073 | Ribsomal LSU H95 Not in a motif group | homologous HL_5TBW_066 HL_46680.1 | |
| HL_5TGM_183 | 1/5/3110:3124 | No text annotation Not in a motif group | homologous HL_5TBW_067 HL_56677.7 | |
| HL_5TGM_184 | 1/5/3193:3199 | Other HL Not in a motif group | geometric HL_5J7L_200 HL_34168.2 | |
| HL_5TGM_185 | 1/5/3240:3247 | No text annotation Not in a motif group | homologous HL_5TBW_069 HL_14449.2 | |
| HL_5TGM_186 | 1/5/3303:3311 | No text annotation Not in a motif group | homologous HL_5TBW_070 HL_27930.1 | |
| HL_5TGM_187 | 1/5/3350:3353 | No text annotation Not in a motif group | homologous HL_8C3A_072 HL_53837.1 | |
| HL_5TGM_188 | 1/6/7:17 | No text annotation Not in a motif group | homologous HL_8C3A_192 HL_89881.2 | |
| HL_5TGM_190 | 1/6/154:160 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_5TGM_191 | 1/6/190:195 | No text annotation Not in a motif group | homologous HL_4V88_189 HL_77805.2 | |
| HL_5TGM_193 | 1/6/243:250 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_27930.1 | |
| HL_5TGM_194 | 1/6/276:279 | No text annotation Not in a motif group | geometric HL_4V88_192 HL_53837.1 | |
| HL_5TGM_195 | 1/6/330:338 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.2 | |
| HL_5TGM_196 | 1/6/368:373 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_5TGM_197 | 1/6/393:404 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_5TGM_198 | 1/6/414:419 | UNCG Not in a motif group | geometric HL_4V88_196 HL_03562.2 | |
| HL_5TGM_199 | 1/6/450:456 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_5TGM_201 | 1/6/520:532 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_06285.2 | |
| HL_5TGM_202 | 1/6/569:574 | Other HL Not in a motif group | homologous HL_4V88_200 HL_53845.1 | |
| HL_5TGM_205 | 1/6/764:772 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_5TGM_206 | 1/6/777:783 | No text annotation Not in a motif group | homologous HL_4V88_204 HL_97896.2 | |
| HL_5TGM_207 | 1/6/829:843 | No text annotation Not in a motif group | homologous HL_4V88_205 HL_96598.1 | |
| HL_5TGM_208 | 1/6/900:909 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.1 | |
| HL_5TGM_209 | 1/6/937:942 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_5TGM_210 | 1/6/997:1007 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_12326.1 | |
| HL_5TGM_211 | 1/6/1055:1064 | No text annotation Not in a motif group | homologous HL_4V88_209 HL_32255.1 | |
| HL_5TGM_212 | 1/6/1084:1089 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_5TGM_213 | 1/6/1121:1126 | GNRA Not in a motif group | homologous HL_4V88_211 HL_42097.1 | |
| HL_5TGM_214 | 1/6/1188:1197 | No text annotation Not in a motif group | homologous HL_4V88_212 HL_73530.2 | |
| HL_5TGM_215 | 1/6/1238:1247 | No text annotation Not in a motif group | homologous HL_4V88_213 HL_53597.2 | |
| HL_5TGM_216 | 1/6/1296:1301 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.1 | |
| HL_5TGM_217 | 1/6/1309:1316 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_5TGM_218 | 1/6/1359:1364 | No text annotation Not in a motif group | homologous HL_4V88_216 HL_10278.1 | |
| HL_5TGM_219 | 1/6/1396:1402 | No text annotation Not in a motif group | homologous HL_4V88_217 HL_42097.1 | |
| HL_5TGM_220 | 1/6/1501:1506 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
| HL_5TGM_221 | 1/6/1550:1561 | No text annotation Not in a motif group | homologous HL_4V88_219 HL_22554.1 | |
| HL_5TGM_222 | 1/6/1594:1602 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_60812.1 | |
| HL_5TGM_224 | 1/6/1778:1783 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 | |
| HL_5TGM_225 | 1/7/36:41 | No text annotation Not in a motif group | homologous HL_5TBW_185 HL_87939.1 | |
| HL_5TGM_226 | 1/7/88:93 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 | |
| HL_5TGM_227 | 1/8/69:89 | No text annotation Not in a motif group | ||
| HL_5TGM_228 | 1/8/108:114 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_87939.1 | |
| HL_5TGM_229 | 1/8/124:129 | No text annotation Not in a motif group | homologous HL_5TBW_076 HL_96851.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5TGM_034 | No text annotation | ||
| HL_5TGM_108 | No text annotation | ||
| HL_5TGM_110 | No text annotation | ||
| HL_5TGM_149 | No text annotation | ||
| HL_5TGM_189 | No text annotation | ||
| HL_5TGM_192 | No text annotation | ||
| HL_5TGM_200 | No text annotation | ||
| HL_5TGM_203 | No text annotation | ||
| HL_5TGM_204 | No text annotation | ||
| HL_5TGM_223 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5TGM_001 | 1/1/3:4, 1/4/155:156 | No text annotation Not in a motif group | ||
| IL_5TGM_002 | 1/1/7:8, 1/4/150:152 | Single bulged C Not in a motif group | homologous IL_5TBW_002 IL_61258.12 | |
| IL_5TGM_003 | 1/1/13:15, 1/4/144:145 | Single bulged U Not in a motif group | homologous IL_5TBW_003 IL_83039.13 | |
| IL_5TGM_004 | 1/1/27:28, 1/1/56:58 | Single stack bend Not in a motif group | homologous IL_5TBW_004 IL_76488.2 | |
| IL_5TGM_005 | 1/1/31:38, 1/1/45:53 | tSH-tHW-tHH-tHS Not in a motif group | geometric IL_5TBW_005 IL_35728.2 | |
| IL_5TGM_006 | 1/1/82:89, 1/1/97:103 | No text annotation Not in a motif group | homologous IL_5TBW_006 IL_88613.1 | |
| IL_5TGM_007 | 1/1/123:124, 1/1/144:149 | No text annotation Not in a motif group | homologous IL_5TBW_007 IL_19724.2 | |
| IL_5TGM_008 | 1/1/125:127, 1/1/141:143 | No text annotation Not in a motif group | homologous IL_5TBW_008 IL_95997.1 | |
| IL_5TGM_009 | 1/1/163:166, 1/1/256:258 | Other IL Not in a motif group | geometric IL_5TBW_064 IL_84698.1 | |
| IL_5TGM_010 | 1/1/169:170, 1/1/248:253 | No text annotation Not in a motif group | homologous IL_5TBW_010 IL_74684.1 | |
| IL_5TGM_011 | 1/1/177:179, 1/1/237:241 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_011 IL_63450.2 | |
| IL_5TGM_012 | 1/1/189:191, 1/1/204:205 | Single bulged U Not in a motif group | homologous IL_5TBW_012 IL_83039.13 | |
| IL_5TGM_013 | 1/1/337:339, 1/4/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_37497.2 | |
| IL_5TGM_014 | 1/1/376:379, 1/1/390:403 | No text annotation Not in a motif group | homologous IL_5TBW_014 IL_60992.6 | |
| IL_5TGM_015 | 1/1/404:410, 1/4/13:19 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5TBW_015 IL_66414.6 | |
| IL_5TGM_016 | 1/1/429:431, 1/1/628:630 | No text annotation Not in a motif group | homologous IL_5TBW_016 IL_51629.2 | |
| IL_5TGM_017 | 1/1/435:495, 1/1/618:624 | No text annotation Not in a motif group | homologous IL_5TBW_017 IL_33557.1 | |
| IL_5TGM_018 | 1/1/512:513, 1/1/577:579 | Single bulged A Not in a motif group | homologous IL_5TBW_018 IL_37497.2 | |
| IL_5TGM_019 | 1/1/517:525, 1/1/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_5TGM_020 | 1/1/531:538, 1/1/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_5TGM_021 | 1/1/668:670, 1/1/792:794 | No text annotation Not in a motif group | homologous IL_5TBW_021 IL_95997.1 | |
| IL_5TGM_022 | 1/1/680:684, 1/1/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_5TGM_023 | 1/1/725:728, 1/1/741:745 | UAA/GAN Not in a motif group | homologous IL_5TBW_023 IL_07235.1 | |
| IL_5TGM_024 | 1/1/752:753, 1/1/779:781 | No text annotation Not in a motif group | homologous IL_8C3A_026 IL_37497.2 | |
| IL_5TGM_025 | 1/1/755:756, 1/1/775:777 | Single bulged U Not in a motif group | homologous IL_5TBW_025 IL_83039.13 | |
| IL_5TGM_026 | 1/1/758:763, 1/1/768:773 | No text annotation Not in a motif group | geometric IL_5TBW_026 IL_19954.2 | |
| IL_5TGM_027 | 1/1/803:805, 1/1/938:940 | No text annotation Not in a motif group | homologous IL_5TBW_027 IL_95997.1 | |
| IL_5TGM_028 | 1/1/805:809, 1/1/931:938 | No text annotation Not in a motif group | geometric IL_5TBW_028 IL_17470.6 | |
| IL_5TGM_029 | 1/1/833:834, 1/1/859:861 | Single bulged G Not in a motif group | geometric IL_5TBW_029 IL_00225.2 | |
| IL_5TGM_030 | 1/1/834:838, 1/1/855:859 | Triple sheared Not in a motif group | homologous IL_5TBW_030 IL_56467.8 | |
| IL_5TGM_031 | 1/1/869:872, 1/1/888:890 | Major groove platform with extra cWW Not in a motif group | homologous IL_5TBW_031 IL_05564.2 | |
| IL_5TGM_032 | 1/1/873:875, 1/1/886:887 | Single bulged U Not in a motif group | homologous IL_5TBW_032 IL_83039.13 | |
| IL_5TGM_033 | 1/1/907:909, 1/1/919:923 | No text annotation Not in a motif group | homologous IL_8C3A_036 IL_90991.6 | |
| IL_5TGM_034 | 1/1/954:956, 1/1/965:967 | No text annotation Not in a motif group | homologous IL_5TBW_034 IL_95997.1 | |
| IL_5TGM_035 | 1/1/969:970, 1/1/1111:1113 | Single stack bend Not in a motif group | homologous IL_5TBW_035 IL_76488.2 | |
| IL_5TGM_036 | 1/1/977:981, 1/1/1102:1104 | No text annotation Not in a motif group | homologous IL_5TBW_036 IL_67474.4 | |
| IL_5TGM_037 | 1/1/983:985, 1/1/1099:1100 | Single bulged G Not in a motif group | homologous IL_5TBW_037 IL_00225.2 | |
| IL_5TGM_038 | 1/1/991:997, 1/1/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5TBW_038 IL_93830.3 | |
| IL_5TGM_039 | 1/1/997:998, 1/1/1050:1052 | Minor groove platform Not in a motif group | homologous IL_5TBW_039 IL_42622.2 | |
| IL_5TGM_040 | 1/1/999:1004, 1/1/1046:1049 | C-loop Not in a motif group | homologous IL_5TBW_040 IL_02509.1 | |
| IL_5TGM_041 | 1/1/1005:1009, 1/1/1041:1045 | No text annotation Not in a motif group | homologous IL_8C3A_044 IL_05145.2 | |
| IL_5TGM_042 | 1/1/1009:1011, 1/1/1039:1041 | No text annotation Not in a motif group | geometric IL_5TBW_042 IL_95997.1 | |
| IL_5TGM_043 | 1/1/1013:1018, 1/1/1034:1037 | Other IL Not in a motif group | homologous IL_5TBW_043 IL_71110.1 | |
| IL_5TGM_044 | 1/1/1069:1071, 1/1/1087:1089 | No text annotation Not in a motif group | homologous IL_5TBW_044 IL_95997.1 | |
| IL_5TGM_045 | 1/1/1074:1076, 1/1/1083:1084 | Single bulged A Not in a motif group | homologous IL_5TBW_045 IL_37497.2 | |
| IL_5TGM_046 | 1/1/1120:1122, 1/1/1136:1138 | No text annotation Not in a motif group | homologous IL_5TBW_046 IL_95997.1 | |
| IL_5TGM_047 | 1/1/1123:1125, 1/1/1133:1135 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_047 IL_52767.2 | |
| IL_5TGM_048 | 1/1/1167:1171, 1/1/1328:1332 | UAA/GAN Not in a motif group | homologous IL_5TBW_048 IL_89002.2 | |
| IL_5TGM_049 | 1/1/1173:1180, 1/1/1325:1326 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5TBW_049 IL_15861.7 | |
| IL_5TGM_050 | 1/1/1180:1182, 1/1/1324:1325 | Single bulged U Not in a motif group | geometric IL_5TBW_050 IL_83039.13 | |
| IL_5TGM_051 | 1/1/1187:1194, 1/1/1314:1319 | No text annotation Not in a motif group | geometric IL_5TBW_051 IL_27086.1 | |
| IL_5TGM_052 | 1/1/1194:1205, 1/1/1299:1314 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_5TGM_053 | 1/1/1207:1209, 1/1/1296:1297 | Single bulged U Not in a motif group | homologous IL_5TBW_053 IL_83039.13 | |
| IL_5TGM_054 | 1/1/1218:1226, 1/1/1283:1287 | Kink-turn Not in a motif group | homologous IL_5TBW_054 IL_90538.4 | |
| IL_5TGM_055 | 1/1/1234:1239, 1/1/1249:1254 | No text annotation Not in a motif group | ||
| IL_5TGM_056 | 1/1/1262:1266, 1/1/1275:1277 | Major groove platform with extra cWW Not in a motif group | geometric IL_5TBW_056 IL_05564.2 | |
| IL_5TGM_057 | 1/1/1376:1378, 1/1/1428:1431 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_057 IL_52767.2 | |
| IL_5TGM_058 | 1/1/1385:1387, 1/1/1420:1421 | Single bulged A Not in a motif group | homologous IL_5TBW_058 IL_37497.2 | |
| IL_5TGM_059 | 1/1/1388:1395, 1/1/1415:1419 | Kink-turn Not in a motif group | homologous IL_5TBW_059 IL_70923.2 | |
| IL_5TGM_060 | 1/1/1398:1400, 1/1/1411:1412 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_37497.2 | |
| IL_5TGM_061 | 1/1/1444:1450, 1/1/2354:2359 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_061 IL_76042.2 | |
| IL_5TGM_062 | 1/1/1500:1505, 1/1/1513:1516 | No text annotation Not in a motif group | homologous IL_5TBW_062 IL_93630.2 | |
| IL_5TGM_063 | 1/1/1532:1536, 1/1/1585:1590 | UAA/GAN Not in a motif group | homologous IL_5TBW_063 IL_89002.2 | |
| IL_5TGM_064 | 1/1/1618:1621, 1/1/1824:1826 | Other IL Not in a motif group | homologous IL_5TBW_064 IL_84698.1 | |
| IL_5TGM_065 | 1/1/1623:1626, 1/1/1817:1822 | Multiple bulged bases with near cWW Not in a motif group | homologous IL_5TBW_065 IL_58686.2 | |
| IL_5TGM_066 | 1/1/1627:1631, 1/1/1811:1816 | No text annotation Not in a motif group | geometric IL_5TBW_066 IL_48431.1 | |
| IL_5TGM_067 | 1/1/1645:1649, 1/1/1806:1810 | Triple sheared Not in a motif group | geometric IL_5TBW_067 IL_56467.8 | |
| IL_5TGM_068 | 1/1/1661:1663, 1/1/1786:1788 | No text annotation Not in a motif group | homologous IL_5TBW_068 IL_95997.1 | |
| IL_5TGM_069 | 1/1/1669:1670, 1/1/1778:1780 | Single bulged C Not in a motif group | geometric IL_5TBW_069 IL_61258.12 | |
| IL_5TGM_070 | 1/1/1670:1671, 1/1/1776:1778 | Single stack bend Not in a motif group | homologous IL_5TBW_070 IL_76488.2 | |
| IL_5TGM_071 | 1/1/1694:1698, 1/1/1747:1752 | No text annotation Not in a motif group | homologous IL_5TBW_071 IL_69313.1 | |
| IL_5TGM_072 | 1/1/1702:1707, 1/1/1737:1743 | No text annotation Not in a motif group | homologous IL_5TBW_072 IL_39753.1 | |
| IL_5TGM_073 | 1/1/1711:1717, 1/1/1727:1733 | Kink-turn Not in a motif group | homologous IL_5TBW_073 IL_60192.2 | |
| IL_5TGM_074 | 1/1/1883:1889, 1/1/2346:2349 | No text annotation Not in a motif group | homologous IL_5TBW_074 IL_49460.2 | |
| IL_5TGM_075 | 1/1/1895:1897, 1/1/2338:2340 | Isolated tWW turn Not in a motif group | homologous IL_5TBW_075 IL_54997.7 | |
| IL_5TGM_076 | 1/1/1898:1901, 1/1/2336:2337 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5TBW_076 IL_50694.2 | |
| IL_5TGM_077 | 1/1/1901:1906, 1/1/2333:2336 | Intercalated tWH Not in a motif group | homologous IL_5TBW_077 IL_82842.2 | |
| IL_5TGM_078 | 1/1/1918:1923, 1/1/1928:1934 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_5TBW_078 IL_65969.2 | |
| IL_5TGM_079 | 1/1/1940:1942, 1/1/2106:2108 | No text annotation Not in a motif group | homologous IL_5TBW_079 IL_95997.1 | |
| IL_5TGM_080 | 1/1/1947:1948, 1/1/2098:2101 | No text annotation Not in a motif group | homologous IL_5TBW_080 IL_74125.1 | |
| IL_5TGM_081 | 1/1/1949:1953, 1/1/2094:2097 | No text annotation Not in a motif group | ||
| IL_5TGM_082 | 1/1/2128:2129, 1/1/2323:2325 | No text annotation Not in a motif group | homologous IL_8C3A_087 IL_37497.2 | |
| IL_5TGM_083 | 1/1/2156:2161, 1/1/2173:2180 | Kink-turn related Not in a motif group | homologous IL_5TBW_083 IL_64509.1 | |
| IL_5TGM_084 | 1/1/2196:2199, 1/1/2245:2246 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_084 IL_88739.1 | |
| IL_5TGM_085 | 1/1/2200:2201, 1/1/2241:2244 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_085 IL_16396.2 | |
| IL_5TGM_086 | 1/1/2204:2206, 1/1/2237:2238 | Single bulged U Not in a motif group | homologous IL_5TBW_086 IL_83039.13 | |
| IL_5TGM_087 | 1/1/2206:2210, 1/1/2235:2237 | Major groove platform with extra pair Not in a motif group | geometric IL_5TBW_087 IL_63450.2 | |
| IL_5TGM_088 | 1/1/2211:2217, 1/1/2228:2234 | No text annotation Not in a motif group | homologous IL_5TBW_088 IL_36973.6 | |
| IL_5TGM_089 | 1/1/2276:2277, 1/1/2307:2310 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_089 IL_59677.2 | |
| IL_5TGM_090 | 1/1/2277:2288, 1/1/2304:2307 | No text annotation Not in a motif group | homologous IL_5TBW_090 IL_81589.2 | |
| IL_5TGM_091 | 1/1/2391:2394, 1/1/2986:2988 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_091 IL_63450.2 | |
| IL_5TGM_092 | 1/1/2396:2398, 1/1/2981:2984 | Minor groove platform with intercalation Not in a motif group | homologous IL_5TBW_092 IL_54678.5 | |
| IL_5TGM_093 | 1/1/2409:2411, 1/1/2811:2812 | Single bulged U Not in a motif group | homologous IL_5TBW_093 IL_83039.13 | |
| IL_5TGM_094 | 1/1/2412:2413, 1/1/2807:2810 | Minor groove platform Not in a motif group | homologous IL_5TBW_094 IL_42622.2 | |
| IL_5TGM_095 | 1/1/2423:2425, 1/1/2604:2607 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_095 IL_38958.7 | |
| IL_5TGM_096 | 1/1/2520:2526, 1/1/2584:2587 | No text annotation Not in a motif group | homologous IL_5TBW_096 IL_74114.1 | |
| IL_5TGM_097 | 1/1/2614:2615, 1/1/2625:2627 | No text annotation Not in a motif group | homologous IL_8C3A_107 IL_69996.1 | |
| IL_5TGM_098 | 1/1/2619:2620, 1/P/74:75 | No text annotation Not in a motif group | ||
| IL_5TGM_099 | 1/1/2666:2668, 1/1/2686:2690 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_099 IL_38958.7 | |
| IL_5TGM_100 | 1/1/2718:2721, 1/1/2735:2738 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_100 IL_30621.2 | |
| IL_5TGM_101 | 1/1/2770:2773, 1/1/2787:2788 | Single stack bend with bulge Not in a motif group | homologous IL_5TBW_101 IL_76488.2 | |
| IL_5TGM_102 | 1/1/2823:2824, 1/1/2865:2867 | Major groove platform Not in a motif group | geometric IL_5TBW_102 IL_27635.1 | |
| IL_5TGM_103 | 1/1/2824:2826, 1/1/2863:2865 | No text annotation Not in a motif group | geometric IL_5TBW_103 IL_95997.1 | |
| IL_5TGM_104 | 1/1/2826:2828, 1/1/2862:2863 | Major groove platform Not in a motif group | geometric IL_5TBW_104 IL_76223.2 | |
| IL_5TGM_105 | 1/1/2828:2830, 1/1/2858:2862 | No text annotation Not in a motif group | homologous IL_5TBW_105 IL_92788.2 | |
| IL_5TGM_106 | 1/1/2835:2839, 1/1/2849:2853 | Triple sheared Not in a motif group | homologous IL_5TBW_106 IL_56467.8 | |
| IL_5TGM_107 | 1/1/2876:2877, 1/1/2949:2951 | No text annotation Not in a motif group | homologous IL_8C3A_115 IL_76223.2 | |
| IL_5TGM_108 | 1/1/2879:2881, 1/1/2943:2947 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_108 IL_90933.2 | |
| IL_5TGM_109 | 1/1/2881:2882, 1/1/2940:2943 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_109 IL_71530.2 | |
| IL_5TGM_110 | 1/1/2889:2891, 1/1/2912:2914 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_51629.2 | |
| IL_5TGM_111 | 1/1/2891:2892, 1/1/2909:2912 | No text annotation Not in a motif group | homologous IL_8C3A_119 IL_95601.3 | |
| IL_5TGM_112 | 1/1/2918:2920, 1/1/2926:2928 | No text annotation Not in a motif group | geometric IL_5TBW_112 IL_95997.1 | |
| IL_5TGM_113 | 1/1/2959:2961, 1/1/2970:2973 | No text annotation Not in a motif group | geometric IL_4E48_001 IL_95997.1 | |
| IL_5TGM_114 | 1/1/3004:3007, 1/1/3139:3144 | Double sheared Not in a motif group | homologous IL_5TBW_114 IL_09705.9 | |
| IL_5TGM_115 | 1/1/3012:3014, 1/1/3040:3042 | No text annotation Not in a motif group | homologous IL_5TBW_115 IL_95997.1 | |
| IL_5TGM_116 | 1/1/3018:3025, 1/1/3030:3036 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_116 IL_04346.7 | |
| IL_5TGM_117 | 1/1/3047:3051, 1/1/3091:3094 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_5TBW_117 IL_37712.2 | |
| IL_5TGM_118 | 1/1/3054:3059, 1/1/3084:3088 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_17136.1 | |
| IL_5TGM_119 | 1/1/3063:3064, 1/1/3077:3080 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_119 IL_71530.2 | |
| IL_5TGM_120 | 1/1/3103:3107, 1/1/3127:3131 | UAA/GAN Not in a motif group | homologous IL_5TBW_120 IL_89002.2 | |
| IL_5TGM_121 | 1/1/3162:3166, 1/1/3284:3288 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_5TGM_122 | 1/1/3166:3170, 1/1/3280:3284 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_5TGM_123 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A Not in a motif group | geometric IL_5TBW_123 IL_37497.2 | |
| IL_5TGM_124 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation Not in a motif group | homologous IL_5TBW_124 IL_15174.1 | |
| IL_5TGM_125 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U Not in a motif group | homologous IL_5TBW_125 IL_83039.13 | |
| IL_5TGM_126 | 1/1/3225:3229, 1/1/3258:3260 | No text annotation Not in a motif group | homologous IL_5TBW_126 IL_19389.6 | |
| IL_5TGM_127 | 1/1/3233:3235, 1/1/3252:3254 | No text annotation Not in a motif group | geometric IL_5TBW_127 IL_95997.1 | |
| IL_5TGM_128 | 1/1/3235:3238, 1/1/3249:3252 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_128 IL_30621.2 | |
| IL_5TGM_129 | 1/1/3300:3303, 1/1/3311:3314 | No text annotation Not in a motif group | homologous IL_8C3A_135 IL_30621.2 | |
| IL_5TGM_130 | 1/1/3318:3320, 1/1/3387:3388 | Single bulged U Not in a motif group | homologous IL_5TBW_130 IL_83039.13 | |
| IL_5TGM_131 | 1/1/3324:3325, 1/1/3381:3383 | Single bulged U Not in a motif group | homologous IL_5TBW_131 IL_83039.13 | |
| IL_5TGM_132 | 1/1/3328:3330, 1/1/3373:3378 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_132 IL_90933.2 | |
| IL_5TGM_133 | 1/1/3332:3337, 1/1/3367:3371 | No text annotation Not in a motif group | homologous IL_5TBW_133 IL_83162.5 | |
| IL_5TGM_134 | 1/1/3340:3342, 1/1/3363:3364 | Single bulged U Not in a motif group | homologous IL_5TBW_134 IL_83039.13 | |
| IL_5TGM_135 | 1/1/3342:3345, 1/1/3360:3363 | tWS-tSW Not in a motif group | geometric IL_5TBW_135 IL_09705.9 | |
| IL_5TGM_136 | 1/1/3349:3350, 1/1/3353:3356 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_136 IL_59677.2 | |
| IL_5TGM_137 | 1/2/24:26, 1/2/600:601 | Single bulged C Not in a motif group | homologous IL_4V88_384 IL_61258.12 | |
| IL_5TGM_138 | 1/2/35:37, 1/2/471:473 | UC cWW Not in a motif group | homologous IL_4V88_385 IL_51629.2 | |
| IL_5TGM_139 | 1/2/37:41, 1/2/466:471 | No text annotation Not in a motif group | geometric IL_4V88_386 IL_41507.1 | |
| IL_5TGM_140 | 1/2/42:48, 1/2/431:433 | No text annotation Not in a motif group | homologous IL_4V88_387 IL_33912.1 | |
| IL_5TGM_141 | 1/2/50:52, 1/2/428:429 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_5TGM_142 | 1/2/58:63, 1/2/87:89 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_5TGM_143 | 1/2/64:69, 1/2/82:86 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.1 | |
| IL_5TGM_144 | 1/2/109:113, 1/2/301:305 | No text annotation Not in a motif group | ||
| IL_5TGM_145 | 1/2/113:116, 1/2/300:301 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.1 | |
| IL_5TGM_146 | 1/2/117:122, 1/2/295:299 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
| IL_5TGM_147 | 1/2/143:149, 1/2/165:172 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_5TGM_148 | 1/2/150:152, 1/2/162:164 | Isolated cWH basepair Not in a motif group | geometric IL_6RA4_002 IL_51629.2 | |
| IL_5TGM_149 | 1/2/186:189, 1/2/196:199 | Double sheared Not in a motif group | homologous IL_4V88_396 IL_09705.9 | |
| IL_5TGM_150 | 1/2/204:206, 1/2/259:263 | Major groove platform with extra cWW Not in a motif group | homologous IL_4V88_397 IL_05564.2 | |
| IL_5TGM_151 | 1/2/206:208, 1/2/257:259 | No text annotation Not in a motif group | geometric IL_4V88_398 IL_95997.1 | |
| IL_5TGM_152 | 1/2/265:267, 1/2/288:289 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.2 | |
| IL_5TGM_153 | 1/2/270:273, 1/2/283:285 | No text annotation Not in a motif group | homologous IL_4V88_400 IL_47298.1 | |
| IL_5TGM_154 | 1/2/274:276, 1/2/279:282 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 IL_52767.2 | |
| IL_5TGM_155 | 1/2/311:316, 1/2/348:355 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_5TGM_156 | 1/2/318:323, 1/2/345:346 | No text annotation Not in a motif group | homologous IL_4V88_403 IL_48100.2 | |
| IL_5TGM_157 | 1/2/363:365, 1/2/376:381 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_5TGM_158 | 1/2/389:391, 1/2/406:408 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_5TGM_159 | 1/2/411:413, 1/2/420:422 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.2 | |
| IL_5TGM_160 | 1/2/439:441, 1/2/463:464 | Single bulged U Not in a motif group | homologous IL_4V88_407 IL_83039.13 | |
| IL_5TGM_161 | 1/2/443:448, 1/2/458:461 | C-loop with extra cWW pair Not in a motif group | homologous IL_4V88_408 IL_93630.2 | |
| IL_5TGM_162 | 1/2/480:486, 1/2/501:508 | No text annotation Not in a motif group | ||
| IL_5TGM_163 | 1/2/517:520, 1/2/532:535 | Double sheared Not in a motif group | geometric IL_4WF9_016 IL_09705.9 | |
| IL_5TGM_164 | 1/2/550:557, 1/2/587:588 | SSU/LSU pseudoknot Not in a motif group | geometric IL_4V88_413 IL_15861.7 | |
| IL_5TGM_165 | 1/2/557:559, 1/2/586:587 | Single bulged U Not in a motif group | homologous IL_4V88_414 IL_83039.13 | |
| IL_5TGM_166 | 1/2/561:568, 1/2/575:584 | No text annotation Not in a motif group | ||
| IL_5TGM_167 | 1/2/616:622, 1/2/1087:1088 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_69996.1 | |
| IL_5TGM_168 | 1/2/624:626, 1/2/956:958 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_5TGM_169 | 1/2/627:631, 1/2/951:955 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_5TGM_170 | 1/2/646:648, 1/2/669:671 | No text annotation Not in a motif group | geometric IL_4J50_002 IL_95997.1 | |
| IL_5TGM_171 | 1/2/728:730, 1/2/785:789 | Minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_031 IL_46796.1 | |
| IL_5TGM_172 | 1/2/731:733, 1/2/782:784 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_95997.1 | |
| IL_5TGM_173 | 1/2/734:743, 1/2/773:781 | No text annotation Not in a motif group | ||
| IL_5TGM_174 | 1/2/800:805, 1/2/833:837 | No text annotation Not in a motif group | ||
| IL_5TGM_175 | 1/2/805:807, 1/2/832:833 | No text annotation Not in a motif group | ||
| IL_5TGM_176 | 1/2/807:808, 1/2/830:832 | No text annotation Not in a motif group | ||
| IL_5TGM_177 | 1/2/848:849, 1/2/945:948 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V88_428 IL_50694.2 | |
| IL_5TGM_178 | 1/2/851:853, 1/2/940:943 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_005 IL_82068.2 | |
| IL_5TGM_179 | 1/2/854:857, 1/2/936:939 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.2 | |
| IL_5TGM_180 | 1/2/857:861, 1/2/933:936 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_431 IL_30621.2 | |
| IL_5TGM_181 | 1/2/868:871, 1/2/907:910 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.2 | |
| IL_5TGM_182 | 1/2/876:882, 1/2/893:902 | No text annotation Not in a motif group | homologous IL_8C3A_440 IL_22252.1 | |
| IL_5TGM_183 | 1/2/968:973, 1/2/997:999 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
| IL_5TGM_184 | 1/2/973:977, 1/2/993:997 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_436 IL_17136.1 | |
| IL_5TGM_185 | 1/2/1017:1019, 1/2/1078:1084 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_5TGM_186 | 1/2/1024:1027, 1/2/1057:1060 | No text annotation Not in a motif group | ||
| IL_5TGM_187 | 1/2/1034:1036, 1/2/1049:1050 | Single bulged U Not in a motif group | homologous IL_4V88_439 IL_83039.13 | |
| IL_5TGM_188 | 1/2/1094:1101, 1/2/1112:1117 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4V88_440 IL_24606.2 | |
| IL_5TGM_189 | 1/2/1129:1130, 1/2/1613:1615 | Single bulged A Not in a motif group | homologous IL_4V88_441 IL_37497.2 | |
| IL_5TGM_190 | 1/2/1132:1134, 1/2/1610:1611 | Single bulged G Not in a motif group | homologous IL_4V88_442 IL_00225.2 | |
| IL_5TGM_191 | 1/2/1140:1143, 1/2/1600:1604 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_5TGM_192 | 1/2/1156:1158, 1/2/1447:1449 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_5TGM_193 | 1/2/1161:1162, 1/2/1442:1444 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_5TGM_194 | 1/2/1196:1198, 1/2/1431:1433 | No text annotation Not in a motif group | geometric IL_4V88_446 IL_95997.1 | |
| IL_5TGM_195 | 1/2/1205:1213, 1/2/1240:1244 | No text annotation Not in a motif group | ||
| IL_5TGM_196 | 1/2/1213:1216, 1/2/1235:1240 | No text annotation Not in a motif group | ||
| IL_5TGM_197 | 1/2/1217:1219, 1/2/1232:1234 | No text annotation Not in a motif group | homologous IL_4V88_448 IL_10023.1 | |
| IL_5TGM_198 | 1/2/1251:1253, 1/2/1423:1424 | Single bulged U Not in a motif group | homologous IL_4V88_449 IL_83039.13 | |
| IL_5TGM_199 | 1/2/1255:1259, 1/2/1419:1421 | Isolated cWS basepair Not in a motif group | geometric IL_4LFB_044 IL_76319.2 | |
| IL_5TGM_200 | 1/2/1259:1261, 1/2/1413:1419 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4V88_451 IL_92788.2 | |
| IL_5TGM_201 | 1/2/1263:1264, 1/2/1409:1411 | Single bulged A Not in a motif group | homologous IL_4V88_452 IL_37497.2 | |
| IL_5TGM_202 | 1/2/1273:1275, 1/2/1306:1308 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_453 IL_51629.2 | |
| IL_5TGM_203 | 1/2/1289:1291, 1/2/1300:1301 | Minor groove platform Not in a motif group | homologous IL_4V88_454 IL_93353.1 | |
| IL_5TGM_204 | 1/2/1322:1325, 1/2/1366:1368 | No text annotation Not in a motif group | homologous IL_4V88_455 IL_10023.1 | |
| IL_5TGM_205 | 1/2/1325:1332, 1/2/1359:1366 | No text annotation Not in a motif group | ||
| IL_5TGM_206 | 1/2/1335:1337, 1/2/1352:1356 | No text annotation Not in a motif group | homologous IL_4V88_457 IL_95997.1 | |
| IL_5TGM_207 | 1/2/1372:1374, 1/2/1390:1395 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V88_458 IL_58032.1 | |
| IL_5TGM_208 | 1/2/1462:1470, 1/2/1502:1511 | No text annotation Not in a motif group | ||
| IL_5TGM_209 | 1/2/1471:1477, 1/2/1496:1501 | No text annotation Not in a motif group | homologous IL_4V88_460 IL_75461.4 | |
| IL_5TGM_210 | 1/2/1478:1481, 1/2/1492:1495 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_461 IL_30621.2 | |
| IL_5TGM_211 | 1/2/1523:1529, 1/2/1548:1554 | No text annotation Not in a motif group | homologous IL_8C3A_469 IL_10092.1 | |
| IL_5TGM_212 | 1/2/1619:1621, 1/2/1747:1750 | No text annotation Not in a motif group | homologous IL_4V88_463 IL_36143.3 | |
| IL_5TGM_213 | 1/2/1621:1624, 1/2/1743:1747 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_5TGM_214 | 1/2/1625:1627, 1/2/1740:1742 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_95997.1 | |
| IL_5TGM_215 | 1/2/1627:1630, 1/2/1736:1740 | Non canonical cWW and near pair Not in a motif group | homologous IL_4V88_466 IL_42334.1 | |
| IL_5TGM_216 | 1/2/1633:1635, 1/2/1731:1733 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_5TGM_217 | 1/2/1636:1639, 1/2/1727:1730 | Double sheared Not in a motif group | geometric IL_4V88_468 IL_09705.9 | |
| IL_5TGM_218 | 1/2/1639:1641, 1/2/1726:1727 | Single bulged U Not in a motif group | homologous IL_4V88_469 IL_83039.13 | |
| IL_5TGM_219 | 1/2/1648:1650, 1/2/1717:1719 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_51629.2 | |
| IL_5TGM_220 | 1/2/1652:1655, 1/2/1712:1715 | Double sheared Not in a motif group | homologous IL_4V88_471 IL_09705.9 | |
| IL_5TGM_221 | 1/2/1655:1657, 1/2/1710:1712 | No text annotation Not in a motif group | geometric IL_4V88_472 IL_95997.1 | |
| IL_5TGM_222 | 1/2/1658:1661, 1/2/1706:1709 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_473 IL_30621.2 | |
| IL_5TGM_223 | 1/2/1661:1665, 1/2/1702:1706 | Triple sheared Not in a motif group | geometric IL_4V88_474 IL_56467.8 | |
| IL_5TGM_225 | 1/3/15:16, 1/3/63:65 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.2 | |
| IL_5TGM_226 | 1/3/21:27, 1/3/53:58 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_5TGM_227 | 1/3/28:29, 1/3/49:52 | Minor groove platform Not in a motif group | geometric IL_5TBW_374 IL_63797.2 | |
| IL_5TGM_228 | 1/3/29:30, 1/3/47:49 | Single stack bend Not in a motif group | homologous IL_5TBW_375 IL_76488.2 | |
| IL_5TGM_229 | 1/3/32:36, 1/3/41:45 | Symmetric double minor groove platform Not in a motif group | homologous IL_5TBW_376 IL_58103.6 | |
| IL_5TGM_230 | 1/3/72:80, 1/3/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_5TGM_231 | 1/3/84:87, 1/3/94:96 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 | |
| IL_5TGM_232 | 1/4/44:64, 1/4/96:100 | No text annotation Not in a motif group | geometric IL_5TBW_144 IL_44998.1 | |
| IL_5TGM_233 | 1/4/64:66, 1/4/93:96 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_145 IL_82068.2 | |
| IL_5TGM_234 | 1/4/68:69, 1/4/89:91 | Single bulged U Not in a motif group | homologous IL_5TBW_146 IL_83039.13 | |
| IL_5TGM_235 | 1/4/69:73, 1/4/78:89 | No text annotation Not in a motif group | geometric IL_5TBW_147 IL_39287.1 | |
| IL_5TGM_236 | 1/5/7:8, 1/8/150:152 | No text annotation Not in a motif group | homologous IL_8C3A_002 IL_61258.12 | |
| IL_5TGM_237 | 1/5/13:15, 1/8/144:145 | No text annotation Not in a motif group | homologous IL_8C3A_003 IL_83039.13 | |
| IL_5TGM_238 | 1/5/27:28, 1/5/56:58 | Single stack bend Not in a motif group | homologous IL_5TBW_004 IL_76488.2 | |
| IL_5TGM_239 | 1/5/82:89, 1/5/97:103 | No text annotation Not in a motif group | homologous IL_5TBW_006 IL_88613.1 | |
| IL_5TGM_240 | 1/5/123:124, 1/5/144:149 | No text annotation Not in a motif group | homologous IL_5TBW_007 IL_19724.2 | |
| IL_5TGM_241 | 1/5/125:127, 1/5/141:143 | No text annotation Not in a motif group | homologous IL_8C3A_008 IL_95997.1 | |
| IL_5TGM_242 | 1/5/163:166, 1/5/256:258 | Other IL Not in a motif group | geometric IL_5TBW_064 IL_84698.1 | |
| IL_5TGM_243 | 1/5/169:174, 1/5/244:253 | No text annotation Not in a motif group | ||
| IL_5TGM_244 | 1/5/177:179, 1/5/237:241 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_011 IL_63450.2 | |
| IL_5TGM_245 | 1/5/189:191, 1/5/204:205 | Single bulged U Not in a motif group | homologous IL_5TBW_012 IL_83039.13 | |
| IL_5TGM_246 | 1/5/337:339, 1/8/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_37497.2 | |
| IL_5TGM_247 | 1/5/376:379, 1/5/390:403 | No text annotation Not in a motif group | homologous IL_5TBW_014 IL_60992.6 | |
| IL_5TGM_248 | 1/5/404:410, 1/8/13:19 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5TBW_015 IL_66414.6 | |
| IL_5TGM_249 | 1/5/429:431, 1/5/628:630 | No text annotation Not in a motif group | homologous IL_5TBW_016 IL_51629.2 | |
| IL_5TGM_250 | 1/5/435:495, 1/5/618:624 | No text annotation Not in a motif group | ||
| IL_5TGM_251 | 1/5/512:513, 1/5/577:579 | Single bulged A Not in a motif group | homologous IL_5TBW_018 IL_37497.2 | |
| IL_5TGM_252 | 1/5/517:525, 1/5/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_5TGM_253 | 1/5/531:538, 1/5/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_5TGM_254 | 1/5/668:670, 1/5/792:794 | No text annotation Not in a motif group | homologous IL_8C3A_023 IL_95997.1 | |
| IL_5TGM_255 | 1/5/680:684, 1/5/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_5TGM_256 | 1/5/725:728, 1/5/741:745 | UAA/GAN Not in a motif group | homologous IL_5TBW_023 IL_07235.1 | |
| IL_5TGM_257 | 1/5/752:753, 1/5/779:781 | No text annotation Not in a motif group | homologous IL_8C3A_026 IL_37497.2 | |
| IL_5TGM_258 | 1/5/755:756, 1/5/775:777 | Single bulged U Not in a motif group | homologous IL_5TBW_025 IL_83039.13 | |
| IL_5TGM_259 | 1/5/758:763, 1/5/768:773 | No text annotation Not in a motif group | homologous IL_5TBW_026 IL_19954.2 | |
| IL_5TGM_260 | 1/5/803:805, 1/5/938:940 | No text annotation Not in a motif group | homologous IL_5TBW_027 IL_95997.1 | |
| IL_5TGM_261 | 1/5/805:809, 1/5/931:938 | No text annotation Not in a motif group | geometric IL_5TBW_028 IL_17470.6 | |
| IL_5TGM_262 | 1/5/828:829, 1/5/895:897 | Single bulged A Not in a motif group | geometric IL_5J7L_261 IL_37497.2 | |
| IL_5TGM_263 | 1/5/833:834, 1/5/859:861 | Single bulged G Not in a motif group | geometric IL_5TBW_029 IL_00225.2 | |
| IL_5TGM_264 | 1/5/834:838, 1/5/855:859 | Triple sheared Not in a motif group | homologous IL_5TBW_030 IL_56467.8 | |
| IL_5TGM_265 | 1/5/869:872, 1/5/888:890 | Major groove platform with extra cWW Not in a motif group | homologous IL_5TBW_031 IL_05564.2 | |
| IL_5TGM_266 | 1/5/873:875, 1/5/886:887 | No text annotation Not in a motif group | homologous IL_8C3A_035 IL_83039.13 | |
| IL_5TGM_267 | 1/5/907:909, 1/5/919:923 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_033 IL_90991.6 | |
| IL_5TGM_268 | 1/5/954:956, 1/5/965:967 | No text annotation Not in a motif group | homologous IL_5TBW_034 IL_95997.1 | |
| IL_5TGM_269 | 1/5/969:970, 1/5/1111:1113 | Single stack bend Not in a motif group | homologous IL_5TBW_035 IL_76488.2 | |
| IL_5TGM_270 | 1/5/977:981, 1/5/1102:1104 | No text annotation Not in a motif group | homologous IL_5TBW_036 IL_67474.4 | |
| IL_5TGM_271 | 1/5/983:985, 1/5/1099:1100 | Single bulged G Not in a motif group | homologous IL_5TBW_037 IL_00225.2 | |
| IL_5TGM_272 | 1/5/991:997, 1/5/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5TBW_038 IL_93830.3 | |
| IL_5TGM_273 | 1/5/997:998, 1/5/1050:1052 | Minor groove platform Not in a motif group | homologous IL_5TBW_039 IL_42622.2 | |
| IL_5TGM_274 | 1/5/999:1004, 1/5/1046:1049 | C-loop Not in a motif group | homologous IL_5TBW_040 IL_02509.1 | |
| IL_5TGM_275 | 1/5/1005:1009, 1/5/1041:1045 | No text annotation Not in a motif group | geometric IL_4V88_422 IL_05145.2 | |
| IL_5TGM_276 | 1/5/1009:1011, 1/5/1039:1041 | No text annotation Not in a motif group | homologous IL_5TBW_042 IL_95997.1 | |
| IL_5TGM_277 | 1/5/1012:1018, 1/5/1034:1038 | No text annotation Not in a motif group | ||
| IL_5TGM_278 | 1/5/1069:1071, 1/5/1087:1089 | No text annotation Not in a motif group | homologous IL_8C3A_047 IL_95997.1 | |
| IL_5TGM_279 | 1/5/1074:1076, 1/5/1083:1084 | Single bulged A Not in a motif group | geometric IL_5TBW_045 IL_37497.2 | |
| IL_5TGM_280 | 1/5/1120:1122, 1/5/1136:1138 | No text annotation Not in a motif group | homologous IL_5TBW_046 IL_95997.1 | |
| IL_5TGM_281 | 1/5/1167:1171, 1/5/1328:1332 | UAA/GAN Not in a motif group | homologous IL_5TBW_048 IL_89002.2 | |
| IL_5TGM_282 | 1/5/1173:1180, 1/5/1325:1326 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5TBW_049 IL_15861.7 | |
| IL_5TGM_283 | 1/5/1180:1182, 1/5/1324:1325 | Single bulged U Not in a motif group | geometric IL_5TBW_050 IL_83039.13 | |
| IL_5TGM_284 | 1/5/1187:1194, 1/5/1314:1319 | No text annotation Not in a motif group | homologous IL_5TBW_051 IL_27086.1 | |
| IL_5TGM_285 | 1/5/1194:1205, 1/5/1299:1314 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_5TGM_286 | 1/5/1207:1209, 1/5/1296:1297 | Single bulged U Not in a motif group | homologous IL_5TBW_053 IL_83039.13 | |
| IL_5TGM_287 | 1/5/1218:1226, 1/5/1283:1287 | No text annotation Not in a motif group | homologous IL_8C3A_057 IL_90538.4 | |
| IL_5TGM_288 | 1/5/1234:1238, 1/5/1250:1254 | No text annotation Not in a motif group | geometric IL_4V9F_043 IL_30542.3 | |
| IL_5TGM_289 | 1/5/1262:1266, 1/5/1275:1277 | No text annotation Not in a motif group | homologous IL_8C3A_059 IL_05564.2 | |
| IL_5TGM_290 | 1/5/1376:1378, 1/5/1428:1431 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_057 IL_52767.2 | |
| IL_5TGM_291 | 1/5/1385:1387, 1/5/1420:1421 | Single bulged A Not in a motif group | homologous IL_5TBW_058 IL_37497.2 | |
| IL_5TGM_292 | 1/5/1388:1395, 1/5/1415:1419 | Kink-turn Not in a motif group | homologous IL_5TBW_059 IL_70923.2 | |
| IL_5TGM_293 | 1/5/1398:1400, 1/5/1411:1412 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_37497.2 | |
| IL_5TGM_294 | 1/5/1444:1450, 1/5/2354:2359 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_061 IL_76042.2 | |
| IL_5TGM_295 | 1/5/1492:1495, 1/5/1835:1836 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V9F_050 IL_50694.2 | |
| IL_5TGM_296 | 1/5/1500:1505, 1/5/1513:1516 | No text annotation Not in a motif group | homologous IL_5TBW_062 IL_93630.2 | |
| IL_5TGM_297 | 1/5/1532:1536, 1/5/1585:1590 | UAA/GAN Not in a motif group | homologous IL_5TBW_063 IL_89002.2 | |
| IL_5TGM_298 | 1/5/1618:1621, 1/5/1824:1826 | No text annotation Not in a motif group | homologous IL_8C3A_070 IL_84698.1 | |
| IL_5TGM_299 | 1/5/1623:1625, 1/5/1818:1822 | No text annotation Not in a motif group | homologous IL_8C3A_071 IL_82068.2 | |
| IL_5TGM_300 | 1/5/1627:1631, 1/5/1811:1816 | No text annotation Not in a motif group | homologous IL_8C3A_072 IL_48431.1 | |
| IL_5TGM_301 | 1/5/1645:1649, 1/5/1806:1810 | Triple sheared Not in a motif group | homologous IL_5TBW_067 IL_56467.8 | |
| IL_5TGM_302 | 1/5/1661:1663, 1/5/1786:1788 | No text annotation Not in a motif group | homologous IL_5TBW_068 IL_95997.1 | |
| IL_5TGM_303 | 1/5/1669:1670, 1/5/1778:1780 | Single bulged C Not in a motif group | homologous IL_5TBW_069 IL_61258.12 | |
| IL_5TGM_304 | 1/5/1670:1671, 1/5/1776:1778 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_76488.2 | |
| IL_5TGM_305 | 1/5/1694:1698, 1/5/1747:1752 | No text annotation Not in a motif group | homologous IL_5TBW_071 IL_69313.1 | |
| IL_5TGM_306 | 1/5/1702:1707, 1/5/1737:1743 | No text annotation Not in a motif group | homologous IL_8C3A_078 IL_39753.1 | |
| IL_5TGM_307 | 1/5/1711:1718, 1/5/1726:1733 | No text annotation Not in a motif group | ||
| IL_5TGM_308 | 1/5/1883:1889, 1/5/2346:2349 | No text annotation Not in a motif group | homologous IL_5TBW_074 IL_49460.2 | |
| IL_5TGM_309 | 1/5/1895:1897, 1/5/2338:2340 | Isolated tWW turn Not in a motif group | homologous IL_5TBW_075 IL_54997.7 | |
| IL_5TGM_310 | 1/5/1898:1901, 1/5/2336:2337 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5TBW_076 IL_50694.2 | |
| IL_5TGM_311 | 1/5/1901:1906, 1/5/2333:2336 | No text annotation Not in a motif group | homologous IL_8C3A_083 IL_82842.2 | |
| IL_5TGM_312 | 1/5/1918:1923, 1/5/1928:1934 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_4V9F_063 IL_65969.2 | |
| IL_5TGM_313 | 1/5/1940:1942, 1/5/2106:2108 | No text annotation Not in a motif group | homologous IL_5TBW_079 IL_95997.1 | |
| IL_5TGM_314 | 1/5/1947:1948, 1/5/2098:2101 | No text annotation Not in a motif group | homologous IL_5TBW_080 IL_74125.1 | |
| IL_5TGM_315 | 1/5/2128:2129, 1/5/2323:2325 | No text annotation Not in a motif group | homologous IL_8C3A_087 IL_37497.2 | |
| IL_5TGM_316 | 1/5/2156:2161, 1/5/2173:2180 | Kink-turn related Not in a motif group | homologous IL_5TBW_083 IL_64509.1 | |
| IL_5TGM_317 | 1/5/2196:2199, 1/5/2245:2246 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_084 IL_88739.1 | |
| IL_5TGM_318 | 1/5/2200:2201, 1/5/2241:2244 | No text annotation Not in a motif group | homologous IL_8C3A_090 IL_16396.2 | |
| IL_5TGM_319 | 1/5/2204:2206, 1/5/2237:2238 | Single bulged U Not in a motif group | homologous IL_5TBW_086 IL_83039.13 | |
| IL_5TGM_320 | 1/5/2276:2277, 1/5/2307:2310 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_089 IL_59677.2 | |
| IL_5TGM_321 | 1/5/2277:2288, 1/5/2304:2307 | No text annotation Not in a motif group | homologous IL_5TBW_090 IL_81589.2 | |
| IL_5TGM_322 | 1/5/2391:2394, 1/5/2986:2988 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_091 IL_63450.2 | |
| IL_5TGM_323 | 1/5/2396:2398, 1/5/2981:2984 | Minor groove platform with intercalation Not in a motif group | homologous IL_5TBW_092 IL_54678.5 | |
| IL_5TGM_324 | 1/5/2409:2411, 1/5/2811:2812 | Single bulged U Not in a motif group | homologous IL_5TBW_093 IL_83039.13 | |
| IL_5TGM_325 | 1/5/2412:2413, 1/5/2807:2810 | Minor groove platform Not in a motif group | homologous IL_5TBW_094 IL_42622.2 | |
| IL_5TGM_326 | 1/5/2423:2425, 1/5/2604:2607 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_095 IL_38958.7 | |
| IL_5TGM_327 | 1/5/2520:2526, 1/5/2584:2587 | No text annotation Not in a motif group | homologous IL_5TBW_096 IL_74114.1 | |
| IL_5TGM_328 | 1/5/2614:2615, 1/5/2625:2627 | Single bulged A Not in a motif group | homologous IL_5TBW_098 IL_37497.2 | |
| IL_5TGM_330 | 1/5/2666:2668, 1/5/2686:2690 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_099 IL_38958.7 | |
| IL_5TGM_331 | 1/5/2714:2716, 1/5/2740:2741 | Single bulged A Not in a motif group | geometric IL_4V88_399 IL_37497.2 | |
| IL_5TGM_332 | 1/5/2718:2721, 1/5/2735:2738 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_100 IL_30621.2 | |
| IL_5TGM_333 | 1/5/2770:2774, 1/5/2786:2788 | No text annotation Not in a motif group | geometric IL_6ZDU_001 IL_23164.1 | |
| IL_5TGM_334 | 1/5/2823:2824, 1/5/2865:2867 | Major groove platform Not in a motif group | geometric IL_5TBW_102 IL_27635.1 | |
| IL_5TGM_335 | 1/5/2824:2826, 1/5/2863:2865 | No text annotation Not in a motif group | geometric IL_5TBW_103 IL_95997.1 | |
| IL_5TGM_336 | 1/5/2826:2828, 1/5/2862:2863 | Major groove platform Not in a motif group | homologous IL_5TBW_104 IL_76223.2 | |
| IL_5TGM_337 | 1/5/2828:2830, 1/5/2858:2862 | No text annotation Not in a motif group | geometric IL_5TBW_105 IL_92788.2 | |
| IL_5TGM_338 | 1/5/2835:2839, 1/5/2849:2853 | No text annotation Not in a motif group | homologous IL_8C3A_114 NA | |
| IL_5TGM_339 | 1/5/2876:2877, 1/5/2949:2951 | No text annotation Not in a motif group | homologous IL_8C3A_115 IL_76223.2 | |
| IL_5TGM_340 | 1/5/2879:2881, 1/5/2943:2947 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_108 IL_90933.2 | |
| IL_5TGM_341 | 1/5/2881:2882, 1/5/2940:2943 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_109 IL_71530.2 | |
| IL_5TGM_342 | 1/5/2889:2891, 1/5/2912:2914 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_51629.2 | |
| IL_5TGM_343 | 1/5/2891:2892, 1/5/2909:2912 | Minor groove platform with intercalation Not in a motif group | homologous IL_5TBW_111 IL_95601.3 | |
| IL_5TGM_344 | 1/5/2918:2920, 1/5/2926:2928 | No text annotation Not in a motif group | geometric IL_5TBW_112 IL_95997.1 | |
| IL_5TGM_345 | 1/5/2960:2961, 1/5/2970:2972 | Single bulged A Not in a motif group | geometric IL_7RQB_101 IL_37497.2 | |
| IL_5TGM_346 | 1/5/3004:3007, 1/5/3139:3144 | No text annotation Not in a motif group | homologous IL_8C3A_123 IL_09705.9 | |
| IL_5TGM_347 | 1/5/3012:3014, 1/5/3040:3042 | No text annotation Not in a motif group | homologous IL_8C3A_124 IL_95997.1 | |
| IL_5TGM_348 | 1/5/3018:3025, 1/5/3030:3036 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_116 IL_04346.7 | |
| IL_5TGM_349 | 1/5/3047:3051, 1/5/3091:3094 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_5TBW_117 IL_37712.2 | |
| IL_5TGM_350 | 1/5/3054:3059, 1/5/3084:3088 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_17136.1 | |
| IL_5TGM_351 | 1/5/3063:3064, 1/5/3077:3080 | No text annotation Not in a motif group | homologous IL_8C3A_128 IL_71530.2 | |
| IL_5TGM_352 | 1/5/3103:3107, 1/5/3127:3131 | UAA/GAN Not in a motif group | homologous IL_5TBW_120 IL_89002.2 | |
| IL_5TGM_353 | 1/5/3161:3166, 1/5/3284:3289 | No text annotation Not in a motif group | geometric IL_6O5F_001 IL_04668.1 | |
| IL_5TGM_354 | 1/5/3167:3170, 1/5/3280:3283 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_001 IL_30621.2 | |
| IL_5TGM_355 | 1/5/3177:3179, 1/5/3210:3211 | Single bulged A Not in a motif group | geometric IL_5TBW_123 IL_37497.2 | |
| IL_5TGM_356 | 1/5/3179:3188, 1/5/3204:3210 | No text annotation Not in a motif group | homologous IL_5TBW_124 IL_15174.1 | |
| IL_5TGM_357 | 1/5/3225:3229, 1/5/3258:3260 | No text annotation Not in a motif group | homologous IL_8C3A_133 IL_19389.6 | |
| IL_5TGM_358 | 1/5/3233:3235, 1/5/3252:3254 | No text annotation Not in a motif group | geometric IL_5TBW_042 IL_95997.1 | |
| IL_5TGM_359 | 1/5/3235:3238, 1/5/3249:3252 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_128 IL_30621.2 | |
| IL_5TGM_360 | 1/5/3300:3303, 1/5/3311:3314 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_129 IL_30621.2 | |
| IL_5TGM_361 | 1/5/3318:3320, 1/5/3387:3388 | No text annotation Not in a motif group | homologous IL_8C3A_136 IL_83039.13 | |
| IL_5TGM_362 | 1/5/3324:3325, 1/5/3381:3383 | Single bulged U Not in a motif group | homologous IL_5TBW_131 IL_83039.13 | |
| IL_5TGM_363 | 1/5/3328:3330, 1/5/3373:3378 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_132 IL_90933.2 | |
| IL_5TGM_364 | 1/5/3332:3337, 1/5/3367:3371 | No text annotation Not in a motif group | homologous IL_8C3A_139 IL_83162.5 | |
| IL_5TGM_365 | 1/5/3340:3345, 1/5/3360:3364 | No text annotation Not in a motif group | ||
| IL_5TGM_366 | 1/5/3349:3350, 1/5/3353:3356 | Multiple bulged bases Not in a motif group | geometric IL_7V9E_001 IL_59677.2 | |
| IL_5TGM_367 | 1/6/24:26, 1/6/600:601 | Single bulged C Not in a motif group | homologous IL_4V88_384 IL_61258.12 | |
| IL_5TGM_368 | 1/6/35:37, 1/6/471:473 | UC cWW Not in a motif group | homologous IL_4V88_385 IL_51629.2 | |
| IL_5TGM_369 | 1/6/37:41, 1/6/466:471 | No text annotation Not in a motif group | geometric IL_4V88_386 IL_41507.1 | |
| IL_5TGM_370 | 1/6/42:48, 1/6/431:433 | No text annotation Not in a motif group | geometric IL_4V88_387 IL_33912.1 | |
| IL_5TGM_371 | 1/6/50:52, 1/6/428:429 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_5TGM_372 | 1/6/58:63, 1/6/87:89 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_5TGM_373 | 1/6/64:69, 1/6/82:86 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.1 | |
| IL_5TGM_374 | 1/6/109:112, 1/6/302:305 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_30621.2 | |
| IL_5TGM_375 | 1/6/113:116, 1/6/300:301 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.1 | |
| IL_5TGM_376 | 1/6/117:123, 1/6/294:299 | No text annotation Not in a motif group | ||
| IL_5TGM_377 | 1/6/143:149, 1/6/165:172 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_5TGM_378 | 1/6/150:152, 1/6/162:164 | No text annotation Not in a motif group | homologous IL_4V88_395 IL_53251.2 | |
| IL_5TGM_379 | 1/6/186:189, 1/6/196:199 | No text annotation Not in a motif group | ||
| IL_5TGM_380 | 1/6/204:206, 1/6/259:263 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V88_397 IL_05564.2 | |
| IL_5TGM_381 | 1/6/206:208, 1/6/257:259 | No text annotation Not in a motif group | homologous IL_4V88_398 IL_95997.1 | |
| IL_5TGM_382 | 1/6/265:267, 1/6/288:289 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.2 | |
| IL_5TGM_383 | 1/6/270:273, 1/6/283:285 | No text annotation Not in a motif group | homologous IL_4V88_400 IL_47298.1 | |
| IL_5TGM_384 | 1/6/275:276, 1/6/279:281 | Single bulged U Not in a motif group | homologous IL_4V88_401 IL_83039.13 | |
| IL_5TGM_385 | 1/6/311:316, 1/6/348:355 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_5TGM_386 | 1/6/318:323, 1/6/345:346 | No text annotation Not in a motif group | homologous IL_4V88_403 IL_48100.2 | |
| IL_5TGM_387 | 1/6/363:365, 1/6/376:381 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_5TGM_388 | 1/6/389:391, 1/6/406:408 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_5TGM_389 | 1/6/411:414, 1/6/419:422 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_402D_001 IL_30621.2 | |
| IL_5TGM_390 | 1/6/439:441, 1/6/463:464 | Single bulged U Not in a motif group | geometric IL_4V88_407 IL_83039.13 | |
| IL_5TGM_391 | 1/6/443:448, 1/6/458:461 | C-loop with extra cWW pair Not in a motif group | homologous IL_4V88_408 IL_93630.2 | |
| IL_5TGM_392 | 1/6/481:482, 1/6/505:507 | Single bulged A Not in a motif group | homologous IL_4V88_409 IL_37497.2 | |
| IL_5TGM_393 | 1/6/516:518, 1/6/533:536 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4V88_411 IL_46796.1 | |
| IL_5TGM_394 | 1/6/518:520, 1/6/532:533 | Minor groove platform Not in a motif group | homologous IL_4V88_412 IL_93353.1 | |
| IL_5TGM_395 | 1/6/550:557, 1/6/587:588 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4V88_413 IL_15861.7 | |
| IL_5TGM_396 | 1/6/557:559, 1/6/586:587 | Single bulged U Not in a motif group | geometric IL_4V88_414 IL_83039.13 | |
| IL_5TGM_397 | 1/6/562:568, 1/6/575:583 | No text annotation Not in a motif group | ||
| IL_5TGM_398 | 1/6/616:622, 1/6/1104:1105 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_69996.1 | |
| IL_5TGM_399 | 1/6/624:626, 1/6/973:975 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_5TGM_400 | 1/6/627:631, 1/6/968:972 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_5TGM_401 | 1/6/646:648, 1/6/686:688 | No text annotation Not in a motif group | homologous IL_4V88_419 IL_95997.1 | |
| IL_5TGM_405 | 1/6/746:747, 1/6/802:805 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V88_423 IL_09061.6 | |
| IL_5TGM_406 | 1/6/748:750, 1/6/799:801 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_95997.1 | |
| IL_5TGM_407 | 1/6/751:759, 1/6/791:798 | No text annotation Not in a motif group | homologous IL_4V88_425 IL_69091.1 | |
| IL_5TGM_408 | 1/6/819:822, 1/6/850:852 | No text annotation Not in a motif group | homologous IL_4V88_426 IL_95997.1 | |
| IL_5TGM_409 | 1/6/822:824, 1/6/848:850 | Isolated cWH basepair Not in a motif group | geometric IL_4V88_427 IL_51629.2 | |
| IL_5TGM_410 | 1/6/865:866, 1/6/962:965 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V88_428 IL_50694.2 | |
| IL_5TGM_411 | 1/6/868:870, 1/6/957:960 | Single bulged G, near cWW Not in a motif group | geometric IL_6CZR_128 IL_52767.2 | |
| IL_5TGM_412 | 1/6/871:874, 1/6/953:956 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.2 | |
| IL_5TGM_413 | 1/6/874:878, 1/6/950:953 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_431 IL_30621.2 | |
| IL_5TGM_414 | 1/6/885:888, 1/6/924:927 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.2 | |
| IL_5TGM_415 | 1/6/893:899, 1/6/910:919 | No text annotation Not in a motif group | homologous IL_8C3A_440 IL_22252.1 | |
| IL_5TGM_416 | 1/6/985:990, 1/6/1014:1016 | Other IL Not in a motif group | homologous IL_4V88_435 IL_22046.1 | |
| IL_5TGM_417 | 1/6/990:994, 1/6/1010:1014 | tSH-tHW-tHS Not in a motif group | geometric IL_4V88_436 IL_17136.1 | |
| IL_5TGM_418 | 1/6/1034:1036, 1/6/1095:1101 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_5TGM_419 | 1/6/1041:1044, 1/6/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_438 IL_30621.2 | |
| IL_5TGM_420 | 1/6/1051:1053, 1/6/1066:1067 | Single bulged U Not in a motif group | homologous IL_4V88_439 IL_83039.13 | |
| IL_5TGM_421 | 1/6/1111:1118, 1/6/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4V88_440 IL_24606.2 | |
| IL_5TGM_422 | 1/6/1146:1147, 1/6/1630:1632 | No text annotation Not in a motif group | ||
| IL_5TGM_423 | 1/6/1149:1151, 1/6/1627:1628 | Single bulged G Not in a motif group | homologous IL_4V88_442 IL_00225.2 | |
| IL_5TGM_424 | 1/6/1157:1160, 1/6/1617:1621 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_5TGM_425 | 1/6/1173:1175, 1/6/1464:1466 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_5TGM_426 | 1/6/1178:1179, 1/6/1459:1461 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_5TGM_427 | 1/6/1213:1215, 1/6/1448:1450 | No text annotation Not in a motif group | homologous IL_4V88_446 IL_95997.1 | |
| IL_5TGM_428 | 1/6/1234:1236, 1/6/1249:1251 | No text annotation Not in a motif group | homologous IL_4V88_448 IL_10023.1 | |
| IL_5TGM_429 | 1/6/1268:1270, 1/6/1440:1441 | Single bulged U Not in a motif group | homologous IL_4V88_449 IL_83039.13 | |
| IL_5TGM_430 | 1/6/1272:1276, 1/6/1436:1438 | Isolated cWS basepair Not in a motif group | geometric IL_4V88_450 IL_76319.2 | |
| IL_5TGM_431 | 1/6/1276:1278, 1/6/1430:1436 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4V88_451 IL_92788.2 | |
| IL_5TGM_432 | 1/6/1280:1281, 1/6/1426:1428 | Single bulged A Not in a motif group | homologous IL_4V88_452 IL_37497.2 | |
| IL_5TGM_433 | 1/6/1290:1292, 1/6/1323:1325 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_453 IL_51629.2 | |
| IL_5TGM_434 | 1/6/1306:1308, 1/6/1317:1318 | Minor groove platform Not in a motif group | homologous IL_4V88_454 IL_93353.1 | |
| IL_5TGM_435 | 1/6/1339:1342, 1/6/1383:1385 | No text annotation Not in a motif group | homologous IL_4V88_455 IL_10023.1 | |
| IL_5TGM_436 | 1/6/1345:1348, 1/6/1377:1380 | Minor groove platform Not in a motif group | homologous IL_4V88_456 IL_76458.1 | |
| IL_5TGM_437 | 1/6/1352:1355, 1/6/1368:1373 | No text annotation Not in a motif group | ||
| IL_5TGM_438 | 1/6/1389:1391, 1/6/1407:1412 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V88_458 IL_58032.1 | |
| IL_5TGM_439 | 1/6/1480:1487, 1/6/1519:1527 | No text annotation Not in a motif group | homologous IL_4V88_459 IL_10447.1 | |
| IL_5TGM_440 | 1/6/1488:1494, 1/6/1513:1518 | No text annotation Not in a motif group | ||
| IL_5TGM_441 | 1/6/1495:1498, 1/6/1509:1512 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_461 IL_30621.2 | |
| IL_5TGM_442 | 1/6/1540:1545, 1/6/1566:1571 | No text annotation Not in a motif group | homologous IL_4V88_462 IL_19954.2 | |
| IL_5TGM_443 | 1/6/1636:1638, 1/6/1764:1767 | No text annotation Not in a motif group | homologous IL_4V88_463 IL_36143.3 | |
| IL_5TGM_444 | 1/6/1638:1641, 1/6/1760:1764 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_5TGM_445 | 1/6/1642:1644, 1/6/1757:1759 | No text annotation Not in a motif group | homologous IL_4V88_465 IL_95997.1 | |
| IL_5TGM_446 | 1/6/1644:1647, 1/6/1753:1757 | Non canonical cWW and near pair Not in a motif group | geometric IL_4V88_466 IL_42334.1 | |
| IL_5TGM_447 | 1/6/1650:1652, 1/6/1748:1750 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_5TGM_448 | 1/6/1653:1656, 1/6/1744:1747 | Double sheared Not in a motif group | homologous IL_4V88_468 IL_09705.9 | |
| IL_5TGM_449 | 1/6/1656:1658, 1/6/1743:1744 | Single bulged U Not in a motif group | geometric IL_4V88_469 IL_83039.13 | |
| IL_5TGM_450 | 1/6/1665:1667, 1/6/1734:1736 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_51629.2 | |
| IL_5TGM_451 | 1/6/1669:1672, 1/6/1729:1732 | Double sheared Not in a motif group | geometric IL_4V88_471 IL_09705.9 | |
| IL_5TGM_452 | 1/6/1672:1674, 1/6/1727:1729 | No text annotation Not in a motif group | homologous IL_4V88_472 IL_95997.1 | |
| IL_5TGM_453 | 1/6/1675:1678, 1/6/1723:1726 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_473 IL_30621.2 | |
| IL_5TGM_454 | 1/6/1678:1682, 1/6/1719:1723 | Triple sheared Not in a motif group | geometric IL_4V88_474 IL_56467.8 | |
| IL_5TGM_456 | 1/7/15:17, 1/7/62:65 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_51629.2 | |
| IL_5TGM_457 | 1/7/21:26, 1/7/57:58 | No text annotation Not in a motif group | ||
| IL_5TGM_458 | 1/7/26:27, 1/7/53:57 | No text annotation Not in a motif group | ||
| IL_5TGM_459 | 1/7/28:29, 1/7/49:52 | Minor groove platform Not in a motif group | homologous IL_5TBW_374 IL_63797.2 | |
| IL_5TGM_460 | 1/7/29:30, 1/7/47:49 | Single stack bend Not in a motif group | geometric IL_5TBW_375 IL_76488.2 | |
| IL_5TGM_461 | 1/7/32:36, 1/7/41:45 | Symmetric double minor groove platform Not in a motif group | geometric IL_5TBW_376 IL_58103.6 | |
| IL_5TGM_462 | 1/7/72:80, 1/7/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_5TGM_463 | 1/7/84:87, 1/7/94:96 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 | |
| IL_5TGM_464 | 1/8/44:64, 1/8/96:100 | No text annotation Not in a motif group | geometric IL_5TBW_144 IL_44998.1 | |
| IL_5TGM_465 | 1/8/64:66, 1/8/93:96 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_145 IL_82068.2 | |
| IL_5TGM_466 | 1/8/68:69, 1/8/89:91 | Single bulged U Not in a motif group | geometric IL_5TBW_146 IL_83039.13 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5TGM_224 | No text annotation | ||
| IL_5TGM_329 | No text annotation | ||
| IL_5TGM_402 | No text annotation | ||
| IL_5TGM_403 | No text annotation | ||
| IL_5TGM_404 | No text annotation | ||
| IL_5TGM_455 | Other IL |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5TGM_001 | 1/1/113:123, 1/1/149:158, 1/1/263:267 | No text annotation Not in a motif group | ||
| J3_5TGM_002 | 1/1/369:376, 1/1/403:404, 1/4/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_5TGM_003 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA | |
| J3_5TGM_004 | 1/1/814:820, 1/1/905:907, 1/1/923:926 | No text annotation Not in a motif group | homologous J3_5TBW_004 NA | |
| J3_5TGM_005 | 1/1/828:831, 1/1/863:867, 1/1/892:897 | No text annotation Not in a motif group | homologous J3_5TBW_005 NA | |
| J3_5TGM_006 | 1/1/986:987, 1/1/1062:1066, 1/1/1092:1098 | No text annotation Not in a motif group | homologous J3_5TBW_006 NA | |
| J3_5TGM_007 | 1/1/1230:1232, 1/1/1256:1262, 1/1/1277:1279 | No text annotation Not in a motif group | homologous J3_5TBW_007 NA | |
| J3_5TGM_008 | 1/1/1479:1485, 1/1/1857:1859, 1/1/1871:1874 | No text annotation Not in a motif group | homologous J3_5TBW_008 NA | |
| J3_5TGM_009 | 1/1/1488:1491, 1/1/1837:1843, 1/1/1852:1854 | No text annotation Not in a motif group | homologous J3_5TBW_009 NA | |
| J3_5TGM_010 | 1/1/1631:1633, 1/1/1640:1645, 1/1/1810:1811 | No text annotation Not in a motif group | homologous J3_5TBW_011 NA | |
| J3_5TGM_011 | 1/1/2432:2435, 1/1/2512:2517, 1/1/2590:2597 | No text annotation Not in a motif group | homologous J3_5TBW_012 NA | |
| J3_5TGM_012 | 1/1/2664:2666, 1/1/2690:2692, 1/1/2701:2706 | No text annotation Not in a motif group | homologous J3_5TBW_013 NA | |
| J3_5TGM_013 | 1/1/2885:2889, 1/1/2914:2917, 1/1/2929:2937 | No text annotation Not in a motif group | ||
| J3_5TGM_014 | 1/1/3298:3300, 1/1/3314:3318, 1/1/3388:3390 | No text annotation Not in a motif group | homologous J3_5TBW_015 NA | |
| J3_5TGM_015 | 1/2/41:42, 1/2/433:439, 1/2/464:466 | No text annotation Not in a motif group | ||
| J3_5TGM_016 | 1/2/633:636, 1/2/843:848, 1/2/948:949 | No text annotation Not in a motif group | ||
| J3_5TGM_017 | 1/2/743:746, 1/2/756:758, 1/2/768:773 | No text annotation Not in a motif group | homologous J3_4V88_032 NA | |
| J3_5TGM_018 | 1/2/864:867, 1/2/911:919, 1/2/926:930 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_5TGM_019 | 1/2/1020:1022, 1/2/1062:1066, 1/2/1073:1077 | No text annotation Not in a motif group | homologous J3_4V88_034 NA | |
| J3_5TGM_020 | 1/2/1144:1147, 1/2/1564:1570, 1/2/1592:1599 | No text annotation Not in a motif group | homologous J3_4V88_035 NA | |
| J3_5TGM_021 | 1/2/1151:1154, 1/2/1451:1453, 1/2/1557:1560 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
| J3_5TGM_022 | 1/2/1163:1170, 1/2/1181:1192, 1/2/1437:1441 | No text annotation Not in a motif group | ||
| J3_5TGM_023 | 1/2/1198:1203, 1/2/1246:1250, 1/2/1425:1431 | No text annotation Not in a motif group | homologous J3_4V88_038 NA | |
| J3_5TGM_024 | 1/2/1266:1271, 1/2/1310:1315, 1/2/1402:1407 | No text annotation Not in a motif group | homologous J3_4V88_039 NA | |
| J3_5TGM_025 | 1/2/1276:1277, 1/2/1286:1289, 1/2/1301:1305 | No text annotation Not in a motif group | ||
| J3_5TGM_026 | 1/2/1319:1321, 1/2/1369:1372, 1/2/1395:1398 | No text annotation Not in a motif group | homologous J3_4V88_040 NA | |
| J3_5TGM_027 | 1/2/1453:1457, 1/2/1516:1523, 1/2/1554:1557 | No text annotation Not in a motif group | homologous J3_4V88_041 NA | |
| J3_5TGM_028 | 1/3/9:14, 1/3/66:67, 1/3/111:112 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA | |
| J3_5TGM_029 | 1/5/113:123, 1/5/149:158, 1/5/263:267 | No text annotation Not in a motif group | ||
| J3_5TGM_030 | 1/5/369:376, 1/5/403:404, 1/8/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_5TGM_031 | 1/5/502:503, 1/5/588:597, 1/5/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA | |
| J3_5TGM_032 | 1/5/813:820, 1/5/905:907, 1/5/923:927 | No text annotation Not in a motif group | ||
| J3_5TGM_033 | 1/5/829:831, 1/5/863:867, 1/5/892:895 | No text annotation Not in a motif group | homologous J3_8C3A_004 NA | |
| J3_5TGM_034 | 1/5/986:987, 1/5/1062:1066, 1/5/1092:1098 | No text annotation Not in a motif group | ||
| J3_5TGM_035 | 1/5/1230:1232, 1/5/1256:1262, 1/5/1277:1279 | No text annotation Not in a motif group | homologous J3_8C3A_005 NA | |
| J3_5TGM_036 | 1/5/1479:1485, 1/5/1857:1859, 1/5/1871:1874 | No text annotation Not in a motif group | homologous J3_5TBW_008 NA | |
| J3_5TGM_037 | 1/5/1488:1491, 1/5/1837:1843, 1/5/1852:1854 | No text annotation Not in a motif group | homologous J3_5TBW_009 NA | |
| J3_5TGM_038 | 1/5/1526:1531, 1/5/1591:1595, 1/5/1612:1613 | No text annotation Not in a motif group | homologous J3_5TBW_010 NA | |
| J3_5TGM_039 | 1/5/1631:1633, 1/5/1640:1645, 1/5/1810:1811 | No text annotation Not in a motif group | homologous J3_5TBW_011 NA | |
| J3_5TGM_040 | 1/5/2432:2435, 1/5/2512:2518, 1/5/2589:2597 | No text annotation Not in a motif group | ||
| J3_5TGM_041 | 1/5/2529:2532, 1/5/2547:2563, 1/5/2578:2581 | No text annotation Not in a motif group | ||
| J3_5TGM_042 | 1/5/2664:2666, 1/5/2690:2692, 1/5/2701:2706 | No text annotation Not in a motif group | homologous J3_5TBW_013 NA | |
| J3_5TGM_043 | 1/5/2886:2889, 1/5/2914:2917, 1/5/2929:2936 | No text annotation Not in a motif group | ||
| J3_5TGM_044 | 1/5/3298:3300, 1/5/3314:3318, 1/5/3388:3390 | No text annotation Not in a motif group | homologous J3_5TBW_015 NA | |
| J3_5TGM_045 | 1/6/41:42, 1/6/433:439, 1/6/464:466 | No text annotation Not in a motif group | ||
| J3_5TGM_046 | 1/6/633:635, 1/6/861:865, 1/6/965:966 | No text annotation Not in a motif group | ||
| J3_5TGM_047 | 1/6/760:763, 1/6/773:775, 1/6/785:790 | No text annotation Not in a motif group | homologous J3_4V88_032 NA | |
| J3_5TGM_048 | 1/6/881:884, 1/6/928:936, 1/6/943:947 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_5TGM_049 | 1/6/1037:1039, 1/6/1079:1083, 1/6/1090:1094 | No text annotation Not in a motif group | homologous J3_4V88_034 NA | |
| J3_5TGM_050 | 1/6/1161:1164, 1/6/1581:1587, 1/6/1609:1616 | No text annotation Not in a motif group | homologous J3_4V88_035 NA | |
| J3_5TGM_051 | 1/6/1168:1171, 1/6/1468:1470, 1/6/1574:1577 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
| J3_5TGM_052 | 1/6/1180:1187, 1/6/1198:1209, 1/6/1454:1458 | No text annotation Not in a motif group | ||
| J3_5TGM_053 | 1/6/1215:1220, 1/6/1263:1267, 1/6/1442:1448 | No text annotation Not in a motif group | homologous J3_4V88_038 NA | |
| J3_5TGM_054 | 1/6/1283:1288, 1/6/1327:1332, 1/6/1419:1424 | No text annotation Not in a motif group | homologous J3_4V88_039 NA | |
| J3_5TGM_055 | 1/6/1292:1294, 1/6/1303:1306, 1/6/1318:1323 | No text annotation Not in a motif group | ||
| J3_5TGM_056 | 1/6/1336:1338, 1/6/1386:1389, 1/6/1412:1415 | No text annotation Not in a motif group | homologous J3_4V88_040 NA | |
| J3_5TGM_057 | 1/6/1470:1474, 1/6/1533:1540, 1/6/1571:1574 | No text annotation Not in a motif group | homologous J3_4V88_041 NA | |
| J3_5TGM_058 | 1/7/9:14, 1/7/66:67, 1/7/111:112 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA |
Problematic loops
No problematic loops
Coloring options: