6GC7 | Motifs

Valid loops

#	loop id	location	annotation	motif
1	HL_6GC7_001 ➜	1/A/58:69	NA	NA
2	HL_6GC7_002 ➜	1/A/86:96	NA	NA
3	HL_6GC7_003 ➜	1/A/123:128	NA	NA
4	HL_6GC7_004 ➜	1/A/136:143	NA	NA
5	HL_6GC7_005 ➜	1/A/158:168	NA	NA
6	HL_6GC7_006 ➜	1/A/194:201	NA	NA
7	HL_6GC7_007 ➜	1/A/225:230	NA	NA
8	HL_6GC7_008 ➜	1/A/246:252	NA	NA
9	HL_6GC7_009 ➜	1/A/305:312	NA	NA
10	HL_6GC7_010 ➜	1/A/319:323	NA	NA
11	HL_6GC7_011 ➜	1/A/327:335	NA	NA
12	HL_6GC7_012 ➜	1/A/380:394	NA	NA
13	HL_6GC7_013 ➜	1/A/410:417	NA	NA
14	HL_6GC7_014 ➜	1/A/462:467	NA	NA
15	HL_6GC7_015 ➜	1/A/485:495	NA	NA
16	HL_6GC7_016 ➜	1/A/543:550	NA	NA
17	HL_6GC7_017 ➜	1/A/566:575	NA	NA
18	HL_6GC7_018 ➜	1/A/611:617	NA	NA
19	HL_6GC7_019 ➜	1/A/628:635	NA	NA
20	HL_6GC7_020 ➜	1/A/641:647	NA	NA
21	HL_6GC7_021 ➜	1/A/779:785	NA	NA
22	HL_6GC7_022 ➜	1/A/826:831	NA	NA
23	HL_6GC7_024 ➜	1/A/955:962	NA	NA
24	HL_6GC7_025 ➜	1/A/978:985	NA	NA
25	HL_6GC7_027 ➜	1/A/1171:1178	NA	NA
26	HL_6GC7_028 ➜	1/A/1222:1227	NA	NA
27	HL_6GC7_029 ➜	1/A/1280:1290	NA	NA
28	HL_6GC7_030 ➜	1/A/1324:1330	NA	NA
29	HL_6GC7_031 ➜	1/A/1363:1368	NA	NA
30	HL_6GC7_032 ➜	1/A/1389:1398	NA	NA
31	HL_6GC7_033 ➜	1/A/1451:1459	NA	NA
32	HL_6GC7_034 ➜	1/A/1492:1498	NA	NA
33	HL_6GC7_035 ➜	1/A/1533:1538	NA	NA
34	HL_6GC7_036 ➜	1/A/1565:1568	NA	NA
35	HL_6GC7_037 ➜	1/A/1612:1619	NA	NA
36	HL_6GC7_038 ➜	1/A/1628:1638	NA	NA
37	HL_6GC7_039 ➜	1/A/1727:1733	NA	NA
38	HL_6GC7_040 ➜	1/A/1752:1756	NA	NA
39	HL_6GC7_042 ➜	1/A/2027:2036	NA	NA
40	HL_6GC7_044 ➜	1/A/2658:2663	NA	NA
41	HL_6GC7_045 ➜	1/A/2701:2706	NA	NA
42	HL_6GC7_046 ➜	1/A/2745:2759	NA	NA
43	HL_6GC7_047 ➜	1/A/2796:2799	NA	NA
44	HL_6GC7_048 ➜	1/A/2819:2827	NA	NA
45	HL_6GC7_049 ➜	1/A/2855:2862	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_6GC7_023 ➜	missing nts	NA
2	HL_6GC7_026 ➜	missing nts	NA
3	HL_6GC7_041 ➜	missing nts	NA
4	HL_6GC7_043 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	IL_6GC7_001 ➜	1/A/24:30,1/A/510:516	NA	NA
2	IL_6GC7_002 ➜	1/A/36:37,1/A/442:444	NA	NA
3	IL_6GC7_003 ➜	1/A/43:44,1/A/434:436	NA	NA
4	IL_6GC7_004 ➜	1/A/81:85,1/A/97:105	NA	NA
5	IL_6GC7_005 ➜	1/A/188:194,1/A/201:208	NA	NA
6	IL_6GC7_006 ➜	1/A/239:245,1/A/253:258	NA	NA
7	IL_6GC7_007 ➜	1/A/269:271,1/A/366:370	NA	NA
8	IL_6GC7_008 ➜	1/A/274:281,1/A/359:363	NA	NA
9	IL_6GC7_009 ➜	1/A/293:295,1/A/343:347	NA	NA
10	IL_6GC7_010 ➜	1/A/481:485,1/A/495:509	NA	NA
11	IL_6GC7_011 ➜	1/A/536:539,1/A/554:557	NA	NA
12	IL_6GC7_012 ➜	1/A/564:566,1/A/575:577	NA	NA
13	IL_6GC7_013 ➜	1/A/606:610,1/A/618:622	NA	NA
14	IL_6GC7_014 ➜	1/A/672:674,1/A/806:808	NA	NA
15	IL_6GC7_015 ➜	1/A/674:678,1/A/799:806	NA	NA
16	IL_6GC7_017 ➜	1/A/843:847,1/A/933:935	NA	NA
17	IL_6GC7_018 ➜	1/A/847:848,1/A/930:933	NA	NA
18	IL_6GC7_019 ➜	1/A/850:851,1/A/926:928	NA	NA
19	IL_6GC7_020 ➜	1/A/856:863,1/A/913:921	NA	NA
20	IL_6GC7_021 ➜	1/A/993:996,1/A/1159:1161	NA	NA
21	IL_6GC7_022 ➜	1/A/998:1002,1/A/1153:1157	NA	NA
22	IL_6GC7_023 ➜	1/A/1004:1011,1/A/1150:1151	NA	NA
23	IL_6GC7_024 ➜	1/A/1011:1013,1/A/1149:1150	NA	NA
24	IL_6GC7_025 ➜	1/A/1018:1024,1/A/1140:1144	NA	NA
25	IL_6GC7_026 ➜	1/A/1024:1030,1/A/1124:1140	NA	NA
26	IL_6GC7_027 ➜	1/A/1196:1198,1/A/1247:1250	NA	NA
27	IL_6GC7_028 ➜	1/A/1202:1206,1/A/1240:1243	NA	NA
28	IL_6GC7_029 ➜	1/A/1208:1215,1/A/1234:1238	NA	NA
29	IL_6GC7_030 ➜	1/A/1262:1269,1/A/2011:2017	NA	NA
30	IL_6GC7_031 ➜	1/A/1310:1313,1/A/1603:1604	NA	NA
31	IL_6GC7_032 ➜	1/A/1319:1323,1/A/1331:1333	NA	NA
32	IL_6GC7_033 ➜	1/A/1351:1353,1/A/1379:1380	NA	NA
33	IL_6GC7_034 ➜	1/A/1353:1355,1/A/1376:1379	NA	NA
34	IL_6GC7_035 ➜	1/A/1357:1362,1/A/1369:1374	NA	NA
35	IL_6GC7_036 ➜	1/A/1415:1417,1/A/1581:1587	NA	NA
36	IL_6GC7_037 ➜	1/A/1417:1421,1/A/1577:1581	NA	NA
37	IL_6GC7_038 ➜	1/A/1432:1435,1/A/1557:1561	NA	NA
38	IL_6GC7_039 ➜	1/A/1437:1440,1/A/1551:1555	NA	NA
39	IL_6GC7_040 ➜	1/A/1450:1451,1/A/1459:1461	NA	NA
40	IL_6GC7_041 ➜	1/A/1467:1471,1/A/1520:1525	NA	NA
41	IL_6GC7_042 ➜	1/A/1474:1479,1/A/1512:1517	NA	NA
42	IL_6GC7_043 ➜	1/A/1481:1482,1/A/1507:1510	NA	NA
43	IL_6GC7_044 ➜	1/A/1487:1491,1/A/1499:1502	NA	NA
44	IL_6GC7_045 ➜	1/A/1526:1530,1/A/1541:1546	NA	NA
45	IL_6GC7_046 ➜	1/A/1651:1656,1/A/2004:2006	NA	NA
46	IL_6GC7_047 ➜	1/A/1663:1665,1/A/1995:1997	NA	NA
47	IL_6GC7_048 ➜	1/A/1666:1669,1/A/1993:1994	NA	NA
48	IL_6GC7_049 ➜	1/A/1669:1674,1/A/1990:1993	NA	NA
49	IL_6GC7_050 ➜	1/A/1712:1718,1/A/1742:1746	NA	NA
50	IL_6GC7_051 ➜	1/A/1719:1725,1/A/1735:1741	NA	NA
51	IL_6GC7_052 ➜	1/A/2050:2052,1/A/2617:2618	NA	NA
52	IL_6GC7_053 ➜	1/A/2053:2057,1/A/2611:2616	NA	NA
53	IL_6GC7_054 ➜	1/A/2636:2640,1/A/2774:2782	NA	NA
54	IL_6GC7_055 ➜	1/A/2652:2658,1/A/2663:2668	NA	NA
55	IL_6GC7_056 ➜	1/A/2680:2684,1/A/2725:2727	NA	NA
56	IL_6GC7_057 ➜	1/A/2687:2691,1/A/2718:2722	NA	NA
57	IL_6GC7_058 ➜	1/A/2695:2696,1/A/2711:2714	NA	NA
58	IL_6GC7_059 ➜	1/A/2737:2742,1/A/2762:2767	NA	NA
59	IL_6GC7_060 ➜	1/A/2795:2796,1/A/2799:2801	NA	NA
60	IL_6GC7_061 ➜	1/A/2806:2811,1/A/2889:2892	NA	NA
61	IL_6GC7_062 ➜	1/A/2838:2839,1/A/2878:2880	NA	NA
62	IL_6GC7_063 ➜	1/A/2843:2846,1/A/2870:2874	NA	NA
63	IL_6GC7_064 ➜	1/A/2847:2852,1/A/2865:2869	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_6GC7_016 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	J3_6GC7_001 ➜	1/A/30:32,1/A/474:481,1/A/509:510	NA	NA
2	J3_6GC7_002 ➜	1/A/56:57,1/A/70:76,1/A/110:114	NA	NA
3	J3_6GC7_003 ➜	1/A/1298:1303,1/A/1625:1627,1/A/1639:1642	NA	NA
4	J3_6GC7_004 ➜	1/A/1306:1310,1/A/1604:1612,1/A/1619:1622	NA	NA
5	J3_6GC7_005 ➜	1/A/2789:2791,1/A/2805:2806,1/A/2892:2894	NA	NA
6	J3_6GC7_006 ➜	1/A/2812:2815,1/A/2831:2836,1/A/2882:2888	NA	NA

Problematic loops

No problematic loops

6GC7 Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops