6GQV Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6GQV_001 | 1/1/38:45 | No text annotation Not in a motif group | homologous HL_8C3A_001 HL_06192.2 | |
| HL_6GQV_002 | 1/1/69:74 | No text annotation Not in a motif group | homologous HL_5TBW_002 HL_02862.2 | |
| HL_6GQV_003 | 1/1/90:96 | No text annotation Not in a motif group | homologous HL_8C3A_003 HL_67216.7 | |
| HL_6GQV_004 | 1/1/132:136 | No text annotation Not in a motif group | homologous HL_8C3A_004 HL_98426.1 | |
| HL_6GQV_005 | 1/1/194:201 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_6GQV_006 | 1/1/208:212 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
| HL_6GQV_007 | 1/1/216:224 | No text annotation Not in a motif group | homologous HL_8C3A_007 HL_08002.8 | |
| HL_6GQV_008 | 1/1/278:287 | No text annotation Not in a motif group | homologous HL_8C3A_008 HL_71554.2 | |
| HL_6GQV_010 | 1/1/357:362 | Other HL Not in a motif group | homologous HL_5TBW_010 HL_42097.1 | |
| HL_6GQV_011 | 1/1/382:387 | No text annotation Not in a motif group | homologous HL_8C3A_011 HL_42097.1 | |
| HL_6GQV_013 | 1/1/543:548 | No text annotation Not in a motif group | ||
| HL_6GQV_014 | 1/1/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_42097.1 | |
| HL_6GQV_015 | 1/1/640:649 | No text annotation Not in a motif group | homologous HL_8C3A_014 HL_89380.2 | |
| HL_6GQV_016 | 1/1/686:694 | No text annotation Not in a motif group | homologous HL_8C3A_015 HL_03345.1 | |
| HL_6GQV_017 | 1/1/707:712 | GNRA Not in a motif group | homologous HL_5TBW_016 HL_42097.1 | |
| HL_6GQV_018 | 1/1/732:737 | GNRA Not in a motif group | homologous HL_5TBW_017 HL_42097.1 | |
| HL_6GQV_023 | 1/1/958:963 | No text annotation Not in a motif group | homologous HL_8C3A_022 HL_96598.1 | |
| HL_6GQV_026 | 1/1/1126:1132 | GNRA Not in a motif group | homologous HL_5TBW_025 HL_42097.1 | |
| HL_6GQV_027 | 1/1/1148:1155 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_64430.2 | |
| HL_6GQV_031 | 1/1/1403:1408 | No text annotation Not in a motif group | homologous HL_8C3A_030 HL_42097.1 | |
| HL_6GQV_063 | 1/1/2840:2848 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_06192.2 | |
| HL_6GQV_064 | 1/1/2897:2904 | No text annotation Not in a motif group | homologous HL_8C3A_063 HL_88526.2 | |
| HL_6GQV_065 | 1/1/2920:2926 | No text annotation Not in a motif group | geometric HL_4WF9_058 HL_43656.2 | |
| HL_6GQV_067 | 1/1/3025:3030 | No text annotation Not in a motif group | geometric HL_3OXE_002 HL_42097.1 | |
| HL_6GQV_068 | 1/1/3068:3073 | No text annotation Not in a motif group | homologous HL_8C3A_067 HL_46680.1 | |
| HL_6GQV_069 | 1/1/3110:3124 | No text annotation Not in a motif group | homologous HL_8C3A_068 HL_56677.7 | |
| HL_6GQV_070 | 1/1/3194:3197 | No text annotation Not in a motif group | geometric HL_6U8D_003 HL_89098.1 | |
| HL_6GQV_071 | 1/1/3240:3247 | No text annotation Not in a motif group | homologous HL_5TBW_069 HL_14449.2 | |
| HL_6GQV_072 | 1/1/3303:3311 | No text annotation Not in a motif group | geometric HL_5TBW_070 HL_27930.1 | |
| HL_6GQV_073 | 1/1/3349:3356 | No text annotation Not in a motif group | ||
| HL_6GQV_074 | 1/2/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_6GQV_075 | 1/2/70:81 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_6GQV_076 | 1/2/152:162 | No text annotation Not in a motif group | ||
| HL_6GQV_077 | 1/2/190:195 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_6GQV_078 | 1/2/230:235 | No text annotation Not in a motif group | geometric HL_4V88_198 HL_56691.2 | |
| HL_6GQV_079 | 1/2/243:250 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_27930.1 | |
| HL_6GQV_080 | 1/2/276:279 | No text annotation Not in a motif group | homologous HL_4V88_192 HL_53837.1 | |
| HL_6GQV_081 | 1/2/330:338 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.2 | |
| HL_6GQV_082 | 1/2/368:373 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_6GQV_083 | 1/2/393:404 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_6GQV_084 | 1/2/414:419 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
| HL_6GQV_085 | 1/2/450:456 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_6GQV_086 | 1/2/491:496 | No text annotation Not in a motif group | ||
| HL_6GQV_087 | 1/2/520:532 | No text annotation Not in a motif group | homologous HL_4V88_199 HL_06285.2 | |
| HL_6GQV_088 | 1/2/569:574 | Other HL Not in a motif group | homologous HL_4V88_200 HL_53845.1 | |
| HL_6GQV_089 | 1/2/717:722 | No text annotation Not in a motif group | ||
| HL_6GQV_090 | 1/2/764:772 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_6GQV_091 | 1/2/777:783 | No text annotation Not in a motif group | ||
| HL_6GQV_092 | 1/2/829:843 | No text annotation Not in a motif group | homologous HL_4V88_205 HL_96598.1 | |
| HL_6GQV_093 | 1/2/900:909 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.1 | |
| HL_6GQV_094 | 1/2/937:942 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_6GQV_095 | 1/2/997:1007 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_12326.1 | |
| HL_6GQV_097 | 1/2/1084:1089 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_6GQV_098 | 1/2/1121:1126 | GNRA Not in a motif group | homologous HL_4V88_211 HL_42097.1 | |
| HL_6GQV_099 | 1/2/1188:1197 | No text annotation Not in a motif group | ||
| HL_6GQV_100 | 1/2/1238:1247 | No text annotation Not in a motif group | geometric HL_5J7L_151 HL_90617.2 | |
| HL_6GQV_101 | 1/2/1296:1301 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.1 | |
| HL_6GQV_102 | 1/2/1309:1316 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_6GQV_103 | 1/2/1358:1365 | No text annotation Not in a motif group | homologous HL_8C3A_221 HL_40069.1 | |
| HL_6GQV_104 | 1/2/1396:1402 | Other HL Not in a motif group | geometric HL_1P6V_001 HL_03562.2 | |
| HL_6GQV_105 | 1/2/1501:1506 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
| HL_6GQV_106 | 1/2/1550:1561 | No text annotation Not in a motif group | homologous HL_4V88_219 HL_22554.1 | |
| HL_6GQV_107 | 1/2/1594:1602 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_60812.1 | |
| HL_6GQV_108 | 1/2/1691:1710 | No text annotation Not in a motif group | ||
| HL_6GQV_109 | 1/2/1778:1783 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 | |
| HL_6GQV_110 | 1/3/36:41 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_6GQV_111 | 1/3/88:93 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 | |
| HL_6GQV_112 | 1/4/47:56 | No text annotation Not in a motif group | geometric HL_4GXY_003 HL_96598.1 | |
| HL_6GQV_114 | 1/4/108:114 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_87939.1 | |
| HL_6GQV_115 | 1/4/124:129 | No text annotation Not in a motif group | homologous HL_5TBW_076 HL_96851.2 | |
| HL_6GQV_116 | 1/AY/13:22 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_6GQV_117 | 1/AY/31:39 | No text annotation Not in a motif group | homologous HL_6CFJ_107 NA | |
| HL_6GQV_118 | 1/AY/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5AXM_003 HL_22280.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6GQV_009 | No text annotation | ||
| HL_6GQV_012 | No text annotation | ||
| HL_6GQV_019 | No text annotation | ||
| HL_6GQV_020 | No text annotation | ||
| HL_6GQV_021 | No text annotation | ||
| HL_6GQV_022 | No text annotation | ||
| HL_6GQV_024 | No text annotation | ||
| HL_6GQV_025 | No text annotation | ||
| HL_6GQV_028 | No text annotation | ||
| HL_6GQV_029 | No text annotation | ||
| HL_6GQV_030 | No text annotation | ||
| HL_6GQV_032 | No text annotation | ||
| HL_6GQV_033 | No text annotation | ||
| HL_6GQV_034 | No text annotation | ||
| HL_6GQV_035 | No text annotation | ||
| HL_6GQV_036 | No text annotation | ||
| HL_6GQV_037 | No text annotation | ||
| HL_6GQV_038 | No text annotation | ||
| HL_6GQV_039 | No text annotation | ||
| HL_6GQV_040 | No text annotation | ||
| HL_6GQV_041 | No text annotation | ||
| HL_6GQV_042 | No text annotation | ||
| HL_6GQV_043 | No text annotation | ||
| HL_6GQV_044 | No text annotation | ||
| HL_6GQV_045 | No text annotation | ||
| HL_6GQV_046 | No text annotation | ||
| HL_6GQV_047 | No text annotation | ||
| HL_6GQV_048 | No text annotation | ||
| HL_6GQV_049 | Other HL | ||
| HL_6GQV_050 | No text annotation | ||
| HL_6GQV_051 | No text annotation | ||
| HL_6GQV_052 | No text annotation | ||
| HL_6GQV_053 | No text annotation | ||
| HL_6GQV_054 | No text annotation | ||
| HL_6GQV_055 | No text annotation | ||
| HL_6GQV_056 | No text annotation | ||
| HL_6GQV_057 | No text annotation | ||
| HL_6GQV_058 | No text annotation | ||
| HL_6GQV_059 | No text annotation | ||
| HL_6GQV_060 | No text annotation | ||
| HL_6GQV_061 | No text annotation | ||
| HL_6GQV_062 | No text annotation | ||
| HL_6GQV_066 | GNRA | ||
| HL_6GQV_096 | No text annotation | ||
| HL_6GQV_113 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6GQV_001 | 1/1/7:9, 1/4/149:152 | No text annotation Not in a motif group | homologous IL_8C3A_001 NA | |
| IL_6GQV_002 | 1/1/13:15, 1/4/144:145 | Single bulged U Not in a motif group | homologous IL_5TBW_003 IL_83039.13 | |
| IL_6GQV_003 | 1/1/27:28, 1/1/56:58 | No text annotation Not in a motif group | homologous IL_8C3A_004 IL_76488.2 | |
| IL_6GQV_004 | 1/1/31:38, 1/1/45:53 | tSH-tHW-tHH-tHS Not in a motif group | geometric IL_5TBW_005 IL_35728.2 | |
| IL_6GQV_005 | 1/1/82:89, 1/1/97:103 | No text annotation Not in a motif group | homologous IL_5TBW_006 IL_88613.1 | |
| IL_6GQV_006 | 1/1/123:124, 1/1/144:149 | No text annotation Not in a motif group | geometric IL_5TBW_007 IL_19724.2 | |
| IL_6GQV_007 | 1/1/125:127, 1/1/141:143 | No text annotation Not in a motif group | homologous IL_8C3A_008 IL_95997.1 | |
| IL_6GQV_008 | 1/1/163:165, 1/1/257:258 | Single stack bend Not in a motif group | homologous IL_5TBW_009 IL_76488.2 | |
| IL_6GQV_009 | 1/1/169:171, 1/1/247:253 | No text annotation Not in a motif group | ||
| IL_6GQV_010 | 1/1/176:178, 1/1/238:242 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V88_397 IL_05564.2 | |
| IL_6GQV_011 | 1/1/189:191, 1/1/204:205 | No text annotation Not in a motif group | homologous IL_8C3A_013 IL_83039.13 | |
| IL_6GQV_012 | 1/1/337:339, 1/4/25:26 | No text annotation Not in a motif group | homologous IL_8C3A_014 IL_37497.2 | |
| IL_6GQV_013 | 1/1/376:379, 1/1/390:403 | No text annotation Not in a motif group | geometric IL_5TBW_014 IL_60992.6 | |
| IL_6GQV_014 | 1/1/404:410, 1/4/13:19 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5TBW_015 IL_66414.6 | |
| IL_6GQV_015 | 1/1/429:431, 1/1/628:630 | No text annotation Not in a motif group | homologous IL_5TBW_016 IL_51629.2 | |
| IL_6GQV_016 | 1/1/512:513, 1/1/577:579 | Single bulged A Not in a motif group | homologous IL_5TBW_018 IL_37497.2 | |
| IL_6GQV_017 | 1/1/517:525, 1/1/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_6GQV_018 | 1/1/531:538, 1/1/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_6GQV_019 | 1/1/668:670, 1/1/792:794 | No text annotation Not in a motif group | homologous IL_8C3A_023 IL_95997.1 | |
| IL_6GQV_020 | 1/1/680:684, 1/1/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_6GQV_021 | 1/1/725:728, 1/1/741:745 | UAA/GAN Not in a motif group | homologous IL_5TBW_023 IL_07235.1 | |
| IL_6GQV_022 | 1/1/752:753, 1/1/779:781 | No text annotation Not in a motif group | homologous IL_8C3A_026 IL_37497.2 | |
| IL_6GQV_023 | 1/1/755:756, 1/1/775:777 | Single bulged U Not in a motif group | homologous IL_5TBW_025 IL_83039.13 | |
| IL_6GQV_025 | 1/1/803:805, 1/1/938:940 | No text annotation Not in a motif group | homologous IL_8C3A_029 IL_95997.1 | |
| IL_6GQV_026 | 1/1/805:809, 1/1/931:938 | No text annotation Not in a motif group | homologous IL_5TBW_028 IL_17470.6 | |
| IL_6GQV_033 | 1/1/954:956, 1/1/965:967 | No text annotation Not in a motif group | homologous IL_5TBW_034 IL_95997.1 | |
| IL_6GQV_034 | 1/1/969:970, 1/1/1111:1113 | No text annotation Not in a motif group | homologous IL_8C3A_038 IL_76488.2 | |
| IL_6GQV_035 | 1/1/977:981, 1/1/1102:1104 | No text annotation Not in a motif group | ||
| IL_6GQV_036 | 1/1/983:985, 1/1/1099:1100 | Single bulged G Not in a motif group | homologous IL_5TBW_037 IL_00225.2 | |
| IL_6GQV_043 | 1/1/1120:1122, 1/1/1136:1138 | No text annotation Not in a motif group | homologous IL_5TBW_046 IL_95997.1 | |
| IL_6GQV_044 | 1/1/1167:1171, 1/1/1328:1332 | No text annotation Not in a motif group | homologous IL_8C3A_051 IL_89002.2 | |
| IL_6GQV_045 | 1/1/1173:1180, 1/1/1325:1326 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5TBW_049 IL_15861.7 | |
| IL_6GQV_046 | 1/1/1180:1182, 1/1/1324:1325 | No text annotation Not in a motif group | homologous IL_8C3A_053 IL_83039.13 | |
| IL_6GQV_047 | 1/1/1187:1194, 1/1/1314:1319 | No text annotation Not in a motif group | geometric IL_5TBW_051 IL_27086.1 | |
| IL_6GQV_048 | 1/1/1194:1205, 1/1/1299:1314 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_6GQV_049 | 1/1/1207:1209, 1/1/1296:1297 | No text annotation Not in a motif group | homologous IL_8C3A_056 IL_83039.13 | |
| IL_6GQV_050 | 1/1/1218:1226, 1/1/1283:1287 | No text annotation Not in a motif group | homologous IL_8C3A_057 IL_90538.4 | |
| IL_6GQV_053 | 1/1/1376:1378, 1/1/1428:1431 | No text annotation Not in a motif group | homologous IL_8C3A_061 IL_52767.2 | |
| IL_6GQV_054 | 1/1/1385:1387, 1/1/1420:1421 | No text annotation Not in a motif group | homologous IL_8C3A_062 IL_37497.2 | |
| IL_6GQV_055 | 1/1/1388:1395, 1/1/1415:1419 | Kink-turn Not in a motif group | homologous IL_5TBW_059 IL_70923.2 | |
| IL_6GQV_056 | 1/1/1398:1400, 1/1/1411:1412 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_37497.2 | |
| IL_6GQV_057 | 1/1/1444:1450, 1/1/2354:2359 | No text annotation Not in a motif group | homologous IL_8C3A_065 IL_76042.2 | |
| IL_6GQV_086 | 1/1/2391:2394, 1/1/2986:2988 | No text annotation Not in a motif group | homologous IL_8C3A_096 IL_63450.2 | |
| IL_6GQV_099 | 1/1/2826:2831, 1/1/2857:2863 | No text annotation Not in a motif group | ||
| IL_6GQV_100 | 1/1/2835:2839, 1/1/2849:2853 | No text annotation Not in a motif group | homologous IL_8C3A_114 NA | |
| IL_6GQV_101 | 1/1/2876:2877, 1/1/2949:2951 | Major groove platform Not in a motif group | homologous IL_5TBW_107 IL_76223.2 | |
| IL_6GQV_102 | 1/1/2879:2881, 1/1/2943:2947 | No text annotation Not in a motif group | homologous IL_8C3A_116 IL_90933.2 | |
| IL_6GQV_103 | 1/1/2881:2882, 1/1/2940:2943 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_109 IL_71530.2 | |
| IL_6GQV_104 | 1/1/2889:2891, 1/1/2912:2914 | No text annotation Not in a motif group | geometric IL_2ZNI_001 IL_51629.2 | |
| IL_6GQV_105 | 1/1/2891:2892, 1/1/2909:2912 | Minor groove platform with intercalation Not in a motif group | geometric IL_5TBW_111 IL_95601.3 | |
| IL_6GQV_106 | 1/1/2918:2920, 1/1/2926:2928 | No text annotation Not in a motif group | homologous IL_8C3A_120 IL_95997.1 | |
| IL_6GQV_108 | 1/1/3004:3007, 1/1/3139:3144 | Double sheared Not in a motif group | homologous IL_5TBW_114 IL_09705.9 | |
| IL_6GQV_109 | 1/1/3012:3014, 1/1/3040:3042 | No text annotation Not in a motif group | homologous IL_8C3A_124 IL_95997.1 | |
| IL_6GQV_110 | 1/1/3018:3025, 1/1/3030:3036 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_116 IL_04346.7 | |
| IL_6GQV_111 | 1/1/3047:3051, 1/1/3091:3094 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_5TBW_117 IL_37712.2 | |
| IL_6GQV_112 | 1/1/3054:3059, 1/1/3084:3088 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_17136.1 | |
| IL_6GQV_113 | 1/1/3063:3064, 1/1/3077:3080 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_119 IL_71530.2 | |
| IL_6GQV_114 | 1/1/3103:3107, 1/1/3127:3131 | No text annotation Not in a motif group | homologous IL_8C3A_129 IL_89002.2 | |
| IL_6GQV_115 | 1/1/3164:3166, 1/1/3284:3286 | No text annotation Not in a motif group | homologous IL_8C3A_130 IL_95997.1 | |
| IL_6GQV_117 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A Not in a motif group | geometric IL_5TBW_123 IL_37497.2 | |
| IL_6GQV_118 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation Not in a motif group | homologous IL_5TBW_124 IL_15174.1 | |
| IL_6GQV_119 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U Not in a motif group | homologous IL_5TBW_125 IL_83039.13 | |
| IL_6GQV_120 | 1/1/3225:3229, 1/1/3258:3260 | No text annotation Not in a motif group | homologous IL_8C3A_133 IL_19389.6 | |
| IL_6GQV_121 | 1/1/3233:3235, 1/1/3252:3254 | No text annotation Not in a motif group | homologous IL_5TBW_127 IL_95997.1 | |
| IL_6GQV_122 | 1/1/3235:3238, 1/1/3249:3252 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4UYK_003 IL_30621.2 | |
| IL_6GQV_123 | 1/1/3300:3303, 1/1/3311:3314 | No text annotation Not in a motif group | homologous IL_8C3A_135 IL_30621.2 | |
| IL_6GQV_124 | 1/1/3318:3320, 1/1/3387:3388 | No text annotation Not in a motif group | homologous IL_8C3A_136 IL_83039.13 | |
| IL_6GQV_125 | 1/1/3324:3325, 1/1/3381:3383 | Single bulged U Not in a motif group | homologous IL_5TBW_131 IL_83039.13 | |
| IL_6GQV_126 | 1/1/3328:3330, 1/1/3373:3378 | No text annotation Not in a motif group | homologous IL_8C3A_138 IL_90933.2 | |
| IL_6GQV_127 | 1/1/3332:3337, 1/1/3367:3371 | No text annotation Not in a motif group | homologous IL_8C3A_139 IL_83162.5 | |
| IL_6GQV_128 | 1/1/3340:3342, 1/1/3363:3364 | No text annotation Not in a motif group | homologous IL_8C3A_140 IL_83039.13 | |
| IL_6GQV_129 | 1/1/3342:3345, 1/1/3360:3363 | tWS-tSW Not in a motif group | geometric IL_5TBW_135 IL_09705.9 | |
| IL_6GQV_130 | 1/2/24:26, 1/2/600:601 | Single bulged C Not in a motif group | homologous IL_4V88_384 IL_61258.12 | |
| IL_6GQV_131 | 1/2/35:41, 1/2/466:473 | No text annotation Not in a motif group | ||
| IL_6GQV_132 | 1/2/42:48, 1/2/431:433 | No text annotation Not in a motif group | homologous IL_4V88_387 IL_33912.1 | |
| IL_6GQV_133 | 1/2/50:52, 1/2/428:429 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_6GQV_134 | 1/2/58:63, 1/2/87:89 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_6GQV_135 | 1/2/64:70, 1/2/81:86 | No text annotation Not in a motif group | ||
| IL_6GQV_136 | 1/2/109:112, 1/2/302:305 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_30621.2 | |
| IL_6GQV_137 | 1/2/113:116, 1/2/300:301 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.1 | |
| IL_6GQV_138 | 1/2/117:122, 1/2/295:299 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
| IL_6GQV_139 | 1/2/143:149, 1/2/165:172 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_6GQV_140 | 1/2/150:152, 1/2/162:164 | No text annotation Not in a motif group | homologous IL_4V88_395 IL_53251.2 | |
| IL_6GQV_141 | 1/2/186:189, 1/2/196:199 | Double sheared Not in a motif group | homologous IL_4V88_396 IL_09705.9 | |
| IL_6GQV_142 | 1/2/204:206, 1/2/259:263 | Major groove platform with extra cWW Not in a motif group | homologous IL_4V88_397 IL_05564.2 | |
| IL_6GQV_143 | 1/2/206:208, 1/2/257:259 | No text annotation Not in a motif group | geometric IL_3TD0_001 IL_95997.1 | |
| IL_6GQV_144 | 1/2/265:267, 1/2/288:289 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.2 | |
| IL_6GQV_145 | 1/2/270:273, 1/2/283:285 | No text annotation Not in a motif group | homologous IL_4V88_400 IL_47298.1 | |
| IL_6GQV_146 | 1/2/274:276, 1/2/279:282 | No text annotation Not in a motif group | geometric IL_4M4O_001 IL_95997.1 | |
| IL_6GQV_147 | 1/2/311:316, 1/2/348:355 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_6GQV_148 | 1/2/318:323, 1/2/345:346 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_48100.2 | |
| IL_6GQV_149 | 1/2/363:365, 1/2/376:381 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_6GQV_150 | 1/2/389:391, 1/2/406:408 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_6GQV_151 | 1/2/411:413, 1/2/420:422 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.2 | |
| IL_6GQV_152 | 1/2/439:441, 1/2/463:464 | Single bulged U Not in a motif group | geometric IL_4LFB_014 IL_83039.13 | |
| IL_6GQV_153 | 1/2/443:447, 1/2/460:461 | C-loop Not in a motif group | geometric IL_4LFB_015 IL_75255.1 | |
| IL_6GQV_154 | 1/2/447:448, 1/2/458:460 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_6GQV_155 | 1/2/481:482, 1/2/505:507 | No text annotation Not in a motif group | homologous IL_8C3A_418 IL_37497.2 | |
| IL_6GQV_156 | 1/2/517:518, 1/2/533:535 | Minor groove platform Not in a motif group | geometric IL_4LFB_004 IL_93353.1 | |
| IL_6GQV_157 | 1/2/518:520, 1/2/532:533 | Minor groove platform Not in a motif group | geometric IL_4V88_388 IL_93353.1 | |
| IL_6GQV_158 | 1/2/550:557, 1/2/587:588 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4V88_413 IL_15861.7 | |
| IL_6GQV_159 | 1/2/557:559, 1/2/586:587 | Single bulged U Not in a motif group | geometric IL_4V88_414 IL_83039.13 | |
| IL_6GQV_160 | 1/2/562:568, 1/2/575:583 | No text annotation Not in a motif group | homologous IL_4V88_415 IL_55871.1 | |
| IL_6GQV_161 | 1/2/616:622, 1/2/1104:1105 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_69996.1 | |
| IL_6GQV_162 | 1/2/624:626, 1/2/973:975 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_6GQV_163 | 1/2/627:631, 1/2/968:972 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_6GQV_164 | 1/2/646:648, 1/2/686:688 | No text annotation Not in a motif group | homologous IL_4V88_419 IL_95997.1 | |
| IL_6GQV_165 | 1/2/652:658, 1/2/676:682 | No text annotation Not in a motif group | ||
| IL_6GQV_166 | 1/2/703:712, 1/2/726:735 | No text annotation Not in a motif group | ||
| IL_6GQV_167 | 1/2/715:717, 1/2/722:723 | No text annotation Not in a motif group | ||
| IL_6GQV_168 | 1/2/745:747, 1/2/802:806 | No text annotation Not in a motif group | ||
| IL_6GQV_169 | 1/2/748:750, 1/2/799:801 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_95997.1 | |
| IL_6GQV_170 | 1/2/751:759, 1/2/791:798 | No text annotation Not in a motif group | homologous IL_4V88_425 IL_69091.1 | |
| IL_6GQV_171 | 1/2/817:822, 1/2/850:854 | No text annotation Not in a motif group | ||
| IL_6GQV_172 | 1/2/867:870, 1/2/957:961 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_429 IL_30621.2 | |
| IL_6GQV_173 | 1/2/871:874, 1/2/953:956 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.2 | |
| IL_6GQV_174 | 1/2/874:878, 1/2/950:953 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_431 IL_30621.2 | |
| IL_6GQV_175 | 1/2/885:888, 1/2/924:927 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.2 | |
| IL_6GQV_176 | 1/2/893:899, 1/2/910:919 | No text annotation Not in a motif group | homologous IL_8C3A_440 IL_22252.1 | |
| IL_6GQV_177 | 1/2/985:990, 1/2/1014:1016 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
| IL_6GQV_178 | 1/2/990:994, 1/2/1010:1014 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_436 IL_17136.1 | |
| IL_6GQV_179 | 1/2/995:997, 1/2/1007:1009 | No text annotation Not in a motif group | geometric IL_1YZ9_001 IL_95997.1 | |
| IL_6GQV_180 | 1/2/1034:1036, 1/2/1095:1101 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_6GQV_181 | 1/2/1041:1044, 1/2/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_438 IL_30621.2 | |
| IL_6GQV_182 | 1/2/1051:1053, 1/2/1066:1067 | Single bulged U Not in a motif group | homologous IL_4V88_439 IL_83039.13 | |
| IL_6GQV_183 | 1/2/1111:1118, 1/2/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4V88_440 IL_24606.2 | |
| IL_6GQV_184 | 1/2/1146:1148, 1/2/1629:1632 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4PKD_001 IL_90933.2 | |
| IL_6GQV_185 | 1/2/1148:1151, 1/2/1627:1629 | No text annotation Not in a motif group | geometric IL_1U9S_007 IL_95997.1 | |
| IL_6GQV_186 | 1/2/1157:1161, 1/2/1616:1621 | No text annotation Not in a motif group | ||
| IL_6GQV_187 | 1/2/1173:1175, 1/2/1464:1466 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_6GQV_188 | 1/2/1178:1179, 1/2/1459:1461 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_6GQV_189 | 1/2/1220:1222, 1/2/1261:1263 | No text annotation Not in a motif group | ||
| IL_6GQV_190 | 1/2/1223:1230, 1/2/1257:1260 | No text annotation Not in a motif group | ||
| IL_6GQV_191 | 1/2/1230:1233, 1/2/1252:1257 | No text annotation Not in a motif group | ||
| IL_6GQV_192 | 1/2/1234:1236, 1/2/1249:1251 | No text annotation Not in a motif group | homologous IL_4V88_448 IL_10023.1 | |
| IL_6GQV_193 | 1/2/1268:1270, 1/2/1440:1441 | Single bulged U Not in a motif group | homologous IL_4V88_449 IL_83039.13 | |
| IL_6GQV_194 | 1/2/1272:1278, 1/2/1430:1438 | No text annotation Not in a motif group | ||
| IL_6GQV_195 | 1/2/1280:1281, 1/2/1426:1428 | Single bulged A Not in a motif group | homologous IL_4V88_452 IL_37497.2 | |
| IL_6GQV_196 | 1/2/1290:1292, 1/2/1323:1325 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_453 IL_51629.2 | |
| IL_6GQV_197 | 1/2/1306:1308, 1/2/1317:1318 | No text annotation Not in a motif group | homologous IL_8C3A_460 IL_93353.1 | |
| IL_6GQV_198 | 1/2/1339:1342, 1/2/1383:1385 | No text annotation Not in a motif group | homologous IL_4V88_455 IL_10023.1 | |
| IL_6GQV_199 | 1/2/1342:1349, 1/2/1376:1383 | No text annotation Not in a motif group | ||
| IL_6GQV_200 | 1/2/1349:1355, 1/2/1368:1376 | No text annotation Not in a motif group | ||
| IL_6GQV_201 | 1/2/1389:1391, 1/2/1407:1412 | No text annotation Not in a motif group | ||
| IL_6GQV_202 | 1/2/1480:1487, 1/2/1519:1527 | No text annotation Not in a motif group | homologous IL_4V88_459 IL_10447.1 | |
| IL_6GQV_203 | 1/2/1488:1494, 1/2/1513:1518 | No text annotation Not in a motif group | homologous IL_4V88_460 IL_75461.4 | |
| IL_6GQV_204 | 1/2/1495:1498, 1/2/1509:1512 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_461 IL_30621.2 | |
| IL_6GQV_205 | 1/2/1540:1545, 1/2/1566:1571 | No text annotation Not in a motif group | geometric IL_4V88_462 IL_19954.2 | |
| IL_6GQV_206 | 1/2/1636:1638, 1/2/1764:1767 | No text annotation Not in a motif group | geometric IL_5J7L_058 IL_36143.3 | |
| IL_6GQV_207 | 1/2/1638:1641, 1/2/1760:1764 | No text annotation Not in a motif group | homologous IL_4V88_464 IL_99670.1 | |
| IL_6GQV_208 | 1/2/1642:1644, 1/2/1757:1759 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_95997.1 | |
| IL_6GQV_209 | 1/2/1644:1647, 1/2/1753:1757 | No text annotation Not in a motif group | ||
| IL_6GQV_210 | 1/2/1650:1652, 1/2/1748:1750 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_6GQV_211 | 1/2/1653:1656, 1/2/1744:1747 | Double sheared Not in a motif group | geometric IL_4V88_468 IL_09705.9 | |
| IL_6GQV_212 | 1/2/1656:1658, 1/2/1743:1744 | Single bulged U Not in a motif group | homologous IL_4V88_469 IL_83039.13 | |
| IL_6GQV_213 | 1/2/1665:1667, 1/2/1734:1736 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_51629.2 | |
| IL_6GQV_214 | 1/2/1669:1672, 1/2/1729:1732 | Double sheared Not in a motif group | homologous IL_4V88_471 IL_09705.9 | |
| IL_6GQV_215 | 1/2/1672:1674, 1/2/1727:1729 | No text annotation Not in a motif group | geometric IL_3D0U_006 IL_95997.1 | |
| IL_6GQV_216 | 1/2/1675:1678, 1/2/1723:1726 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_473 IL_30621.2 | |
| IL_6GQV_217 | 1/2/1678:1682, 1/2/1719:1723 | Triple sheared Not in a motif group | geometric IL_7RQB_075 IL_56467.8 | |
| IL_6GQV_218 | 1/2/1687:1690, 1/2/1711:1714 | No text annotation Not in a motif group | ||
| IL_6GQV_219 | 1/3/15:16, 1/3/63:65 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.2 | |
| IL_6GQV_220 | 1/3/21:27, 1/3/54:58 | No text annotation Not in a motif group | ||
| IL_6GQV_221 | 1/3/27:29, 1/3/49:54 | No text annotation Not in a motif group | ||
| IL_6GQV_222 | 1/3/29:30, 1/3/47:49 | Single stack bend Not in a motif group | homologous IL_5TBW_375 IL_76488.2 | |
| IL_6GQV_223 | 1/3/32:36, 1/3/41:45 | Symmetric double minor groove platform Not in a motif group | homologous IL_5TBW_376 IL_58103.6 | |
| IL_6GQV_224 | 1/3/72:80, 1/3/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_6GQV_225 | 1/3/84:87, 1/3/94:96 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 | |
| IL_6GQV_226 | 1/4/64:66, 1/4/93:96 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_145 IL_82068.2 | |
| IL_6GQV_227 | 1/4/68:69, 1/4/89:91 | Single bulged U Not in a motif group | homologous IL_5TBW_146 IL_83039.13 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6GQV_024 | No text annotation | ||
| IL_6GQV_027 | No text annotation | ||
| IL_6GQV_028 | No text annotation | ||
| IL_6GQV_029 | No text annotation | ||
| IL_6GQV_030 | No text annotation | ||
| IL_6GQV_031 | Single bulged U | ||
| IL_6GQV_032 | Multiple bulged bases | ||
| IL_6GQV_037 | No text annotation | ||
| IL_6GQV_038 | No text annotation | ||
| IL_6GQV_039 | No text annotation | ||
| IL_6GQV_040 | No text annotation | ||
| IL_6GQV_041 | No text annotation | ||
| IL_6GQV_042 | Single bulged A | ||
| IL_6GQV_051 | No text annotation | ||
| IL_6GQV_052 | No text annotation | ||
| IL_6GQV_058 | C-loop | ||
| IL_6GQV_059 | No text annotation | ||
| IL_6GQV_060 | No text annotation | ||
| IL_6GQV_061 | Multiple bulged bases | ||
| IL_6GQV_062 | No text annotation | ||
| IL_6GQV_063 | Triple sheared | ||
| IL_6GQV_064 | No text annotation | ||
| IL_6GQV_065 | Single bulged C | ||
| IL_6GQV_066 | Single stack bend | ||
| IL_6GQV_067 | No text annotation | ||
| IL_6GQV_068 | No text annotation | ||
| IL_6GQV_069 | Kink-turn | ||
| IL_6GQV_070 | No text annotation | ||
| IL_6GQV_071 | No text annotation | ||
| IL_6GQV_072 | No text annotation | ||
| IL_6GQV_073 | Intercalated tWH | ||
| IL_6GQV_074 | No text annotation | ||
| IL_6GQV_075 | No text annotation | ||
| IL_6GQV_076 | Single stack bend | ||
| IL_6GQV_077 | No text annotation | ||
| IL_6GQV_078 | No text annotation | ||
| IL_6GQV_079 | No text annotation | ||
| IL_6GQV_080 | No text annotation | ||
| IL_6GQV_081 | Single bulged U | ||
| IL_6GQV_082 | Major groove platform with extra pair | ||
| IL_6GQV_083 | No text annotation | ||
| IL_6GQV_084 | No text annotation | ||
| IL_6GQV_085 | No text annotation | ||
| IL_6GQV_087 | No text annotation | ||
| IL_6GQV_088 | No text annotation | ||
| IL_6GQV_089 | Minor groove platform | ||
| IL_6GQV_090 | No text annotation | ||
| IL_6GQV_091 | No text annotation | ||
| IL_6GQV_092 | No text annotation | ||
| IL_6GQV_093 | No text annotation | ||
| IL_6GQV_094 | No text annotation | ||
| IL_6GQV_095 | Isolated tHS basepair with bulges | ||
| IL_6GQV_096 | No text annotation | ||
| IL_6GQV_097 | Single stack bend with bulge | ||
| IL_6GQV_098 | No text annotation | ||
| IL_6GQV_107 | No text annotation | ||
| IL_6GQV_116 | Tandem non-canonical cWW pairs |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6GQV_001 | 1/1/113:123, 1/1/149:158, 1/1/263:267 | No text annotation Not in a motif group | ||
| J3_6GQV_002 | 1/1/369:376, 1/1/403:404, 1/4/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_6GQV_003 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA | |
| J3_6GQV_014 | 1/1/2886:2889, 1/1/2914:2916, 1/1/2930:2936 | No text annotation Not in a motif group | homologous J3_8C3A_011 NA | |
| J3_6GQV_015 | 1/1/3298:3300, 1/1/3314:3318, 1/1/3388:3390 | No text annotation Not in a motif group | homologous J3_5TBW_015 NA | |
| J3_6GQV_016 | 1/2/41:42, 1/2/433:439, 1/2/464:466 | No text annotation Not in a motif group | ||
| J3_6GQV_017 | 1/2/633:635, 1/2/861:866, 1/2/962:966 | No text annotation Not in a motif group | homologous J3_8C3A_034 NA | |
| J3_6GQV_018 | 1/2/760:763, 1/2/773:775, 1/2/785:790 | No text annotation Not in a motif group | homologous J3_4V88_032 NA | |
| J3_6GQV_019 | 1/2/881:884, 1/2/928:936, 1/2/943:947 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_6GQV_020 | 1/2/1037:1039, 1/2/1079:1083, 1/2/1090:1094 | No text annotation Not in a motif group | homologous J3_4V88_034 NA | |
| J3_6GQV_021 | 1/2/1161:1163, 1/2/1582:1587, 1/2/1609:1616 | No text annotation Not in a motif group | ||
| J3_6GQV_022 | 1/2/1168:1171, 1/2/1468:1470, 1/2/1574:1577 | No text annotation Not in a motif group | homologous J3_8C3A_039 NA | |
| J3_6GQV_023 | 1/2/1180:1188, 1/2/1197:1209, 1/2/1454:1458 | No text annotation Not in a motif group | ||
| J3_6GQV_024 | 1/2/1283:1288, 1/2/1327:1332, 1/2/1419:1424 | No text annotation Not in a motif group | homologous J3_4V88_039 NA | |
| J3_6GQV_025 | 1/2/1293:1294, 1/2/1303:1306, 1/2/1318:1322 | No text annotation Not in a motif group | ||
| J3_6GQV_026 | 1/2/1335:1338, 1/2/1386:1389, 1/2/1412:1416 | No text annotation Not in a motif group | ||
| J3_6GQV_027 | 1/2/1470:1474, 1/2/1533:1540, 1/2/1571:1574 | No text annotation Not in a motif group | homologous J3_4V88_041 NA | |
| J3_6GQV_028 | 1/3/9:14, 1/3/66:67, 1/3/111:112 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA | |
| J3_6GQV_029 | 1/4/44:45, 1/4/58:64, 1/4/96:100 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6GQV_004 | No text annotation | ||
| J3_6GQV_005 | No text annotation | ||
| J3_6GQV_006 | No text annotation | ||
| J3_6GQV_007 | No text annotation | ||
| J3_6GQV_008 | No text annotation | ||
| J3_6GQV_009 | No text annotation | ||
| J3_6GQV_010 | No text annotation | ||
| J3_6GQV_011 | No text annotation | ||
| J3_6GQV_012 | No text annotation | ||
| J3_6GQV_013 | No text annotation |
Coloring options: