6HMA | Motifs

69 Hairpin loops
110 Internal loops
13 Junction loops

Valid loops

#	loop id	location	annotation	motif
1	HL_6HMA_001 ➜	1/A/67:74	NA	NA
2	HL_6HMA_002 ➜	1/A/87:95	NA	NA
3	HL_6HMA_003 ➜	1/A/122:127	NA	NA
4	HL_6HMA_004 ➜	1/A/136:143	NA	NA
5	HL_6HMA_005 ➜	1/A/159:169	NA	NA
6	HL_6HMA_006 ➜	1/A/197:204	NA	NA
7	HL_6HMA_008 ➜	1/A/249:255	NA	NA
8	HL_6HMA_009 ➜	1/A/283:288	NA	NA
9	HL_6HMA_010 ➜	1/A/348:355	NA	NA
10	HL_6HMA_011 ➜	1/A/362:366	NA	NA
11	HL_6HMA_012 ➜	1/A/370:378	NA	NA
12	HL_6HMA_013 ➜	1/A/427:439	NA	NA
13	HL_6HMA_014 ➜	1/A/456:463	NA	NA
14	HL_6HMA_015 ➜	1/A/508:513	NA	NA
15	HL_6HMA_016 ➜	1/A/533:538	NA	NA
16	HL_6HMA_017 ➜	1/A/587:594	NA	NA
17	HL_6HMA_018 ➜	1/A/609:618	NA	NA
18	HL_6HMA_019 ➜	1/A/655:661	NA	NA
19	HL_6HMA_020 ➜	1/A/674:679	NA	NA
20	HL_6HMA_023 ➜	1/A/789:798	NA	NA
21	HL_6HMA_024 ➜	1/A/824:830	NA	NA
22	HL_6HMA_025 ➜	1/A/871:876	NA	NA
23	HL_6HMA_027 ➜	1/A/999:1006	NA	NA
24	HL_6HMA_028 ➜	1/A/1022:1029	NA	NA
25	HL_6HMA_030 ➜	1/A/1214:1218	NA	NA
26	HL_6HMA_031 ➜	1/A/1260:1265	NA	NA
27	HL_6HMA_032 ➜	1/A/1318:1326	NA	NA
28	HL_6HMA_033 ➜	1/A/1361:1367	NA	NA
29	HL_6HMA_034 ➜	1/A/1400:1405	NA	NA
30	HL_6HMA_035 ➜	1/A/1426:1435	NA	NA
31	HL_6HMA_037 ➜	1/A/1612:1615	NA	NA
32	HL_6HMA_038 ➜	1/A/1656:1663	NA	NA
33	HL_6HMA_039 ➜	1/A/1673:1681	NA	NA
34	HL_6HMA_040 ➜	1/A/1735:1740	NA	NA
35	HL_6HMA_041 ➜	1/A/1759:1770	NA	NA
36	HL_6HMA_042 ➜	1/A/1779:1783	NA	NA
37	HL_6HMA_043 ➜	1/A/1803:1815	NA	NA
38	HL_6HMA_044 ➜	1/A/1833:1838	NA	NA
39	HL_6HMA_047 ➜	1/A/1976:1984	NA	NA
40	HL_6HMA_048 ➜	1/A/2054:2063	NA	NA
41	HL_6HMA_051 ➜	1/A/2275:2283	NA	NA
42	HL_6HMA_052 ➜	1/A/2291:2303	NA	NA
43	HL_6HMA_053 ➜	1/A/2330:2340	NA	NA
44	HL_6HMA_054 ➜	1/A/2351:2358	NA	NA
45	HL_6HMA_055 ➜	1/A/2382:2389	NA	NA
46	HL_6HMA_056 ➜	1/A/2401:2406	NA	NA
47	HL_6HMA_057 ➜	1/A/2431:2440	NA	NA
48	HL_6HMA_058 ➜	1/A/2498:2506	NA	NA
49	HL_6HMA_059 ➜	1/A/2555:2562	NA	NA
50	HL_6HMA_060 ➜	1/A/2578:2584	NA	NA
51	HL_6HMA_061 ➜	1/A/2621:2626	NA	NA
52	HL_6HMA_062 ➜	1/A/2685:2690	NA	NA
53	HL_6HMA_063 ➜	1/A/2728:2733	NA	NA
54	HL_6HMA_064 ➜	1/A/2772:2786	NA	NA
55	HL_6HMA_066 ➜	1/A/2839:2847	NA	NA
56	HL_6HMA_067 ➜	1/A/2876:2881	NA	NA
57	HL_6HMA_068 ➜	1/B/36:42	NA	NA
58	HL_6HMA_069 ➜	1/B/83:88	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_6HMA_007 ➜	missing nts	NA
2	HL_6HMA_021 ➜	missing nts	NA
3	HL_6HMA_022 ➜	missing nts	NA
4	HL_6HMA_026 ➜	missing nts	NA
5	HL_6HMA_029 ➜	missing nts	NA
6	HL_6HMA_036 ➜	missing nts	NA
7	HL_6HMA_045 ➜	missing nts	NA
8	HL_6HMA_046 ➜	missing nts	NA
9	HL_6HMA_049 ➜	missing nts	NA
10	HL_6HMA_050 ➜	missing nts	NA
11	HL_6HMA_065 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	IL_6HMA_001 ➜	1/A/24:30,1/A/555:561	NA	NA
2	IL_6HMA_002 ➜	1/A/36:37,1/A/488:490	NA	NA
3	IL_6HMA_003 ➜	1/A/42:44,1/A/480:483	NA	NA
4	IL_6HMA_004 ➜	1/A/81:85,1/A/97:104	NA	NA
5	IL_6HMA_005 ➜	1/A/152:153,1/A/175:177	NA	NA
6	IL_6HMA_006 ➜	1/A/186:187,1/A/215:217	NA	NA
7	IL_6HMA_007 ➜	1/A/190:197,1/A/204:212	NA	NA
8	IL_6HMA_008 ➜	1/A/241:248,1/A/256:262	NA	NA
9	IL_6HMA_009 ➜	1/A/305:306,1/A/409:412	NA	NA
10	IL_6HMA_011 ➜	1/A/319:327,1/A/399:400	NA	NA
11	IL_6HMA_012 ➜	1/A/336:338,1/A/386:390	NA	NA
12	IL_6HMA_013 ➜	1/A/527:530,1/A/541:554	NA	NA
13	IL_6HMA_014 ➜	1/A/581:584,1/A/597:600	NA	NA
14	IL_6HMA_015 ➜	1/A/607:609,1/A/618:620	NA	NA
15	IL_6HMA_016 ➜	1/A/638:640,1/A/705:707	NA	NA
16	IL_6HMA_017 ➜	1/A/649:653,1/A/663:667	NA	NA
17	IL_6HMA_018 ➜	1/A/717:719,1/A/851:853	NA	NA
18	IL_6HMA_019 ➜	1/A/719:723,1/A/844:851	NA	NA
19	IL_6HMA_020 ➜	1/A/742:743,1/A/808:810	NA	NA
20	IL_6HMA_021 ➜	1/A/747:748,1/A/773:775	NA	NA
21	IL_6HMA_022 ➜	1/A/748:752,1/A/769:773	NA	NA
22	IL_6HMA_023 ➜	1/A/783:785,1/A/802:803	NA	NA
23	IL_6HMA_024 ➜	1/A/820:822,1/A/832:836	NA	NA
24	IL_6HMA_025 ➜	1/A/881:883,1/A/984:987	NA	NA
25	IL_6HMA_026 ➜	1/A/889:893,1/A/975:978	NA	NA
26	IL_6HMA_027 ➜	1/A/896:897,1/A/970:972	NA	NA
27	IL_6HMA_028 ➜	1/A/901:907,1/A/960:966	NA	NA
28	IL_6HMA_029 ➜	1/A/907:908,1/A/958:960	NA	NA
29	IL_6HMA_030 ➜	1/A/909:913,1/A/954:957	NA	NA
30	IL_6HMA_031 ➜	1/A/920:924,1/A/943:947	NA	NA
31	IL_6HMA_032 ➜	1/A/1038:1040,1/A/1203:1204	NA	NA
32	IL_6HMA_033 ➜	1/A/1042:1046,1/A/1197:1201	NA	NA
33	IL_6HMA_034 ➜	1/A/1048:1055,1/A/1194:1195	NA	NA
34	IL_6HMA_035 ➜	1/A/1055:1057,1/A/1193:1194	NA	NA
35	IL_6HMA_036 ➜	1/A/1062:1068,1/A/1184:1188	NA	NA
36	IL_6HMA_037 ➜	1/A/1068:1074,1/A/1168:1184	NA	NA
37	IL_6HMA_038 ➜	1/A/1075:1078,1/A/1165:1167	NA	NA
38	IL_6HMA_039 ➜	1/A/1081:1083,1/A/1160:1162	NA	NA
39	IL_6HMA_041 ➜	1/A/1235:1237,1/A/1285:1288	NA	NA
40	IL_6HMA_042 ➜	1/A/1243:1245,1/A/1277:1279	NA	NA
41	IL_6HMA_043 ➜	1/A/1246:1253,1/A/1272:1276	NA	NA
42	IL_6HMA_044 ➜	1/A/1257:1259,1/A/1266:1268	NA	NA
43	IL_6HMA_045 ➜	1/A/1300:1307,1/A/2038:2044	NA	NA
44	IL_6HMA_046 ➜	1/A/1356:1360,1/A/1368:1370	NA	NA
45	IL_6HMA_047 ➜	1/A/1388:1392,1/A/1413:1417	NA	NA
46	IL_6HMA_048 ➜	1/A/1394:1398,1/A/1407:1411	NA	NA
47	IL_6HMA_049 ➜	1/A/1448:1460,1/A/1628:1635	NA	NA
48	IL_6HMA_050 ➜	1/A/1461:1465,1/A/1624:1627	NA	NA
49	IL_6HMA_051 ➜	1/A/1476:1480,1/A/1604:1608	NA	NA
50	IL_6HMA_052 ➜	1/A/1481:1485,1/A/1598:1603	NA	NA
51	IL_6HMA_053 ➜	1/A/1490:1492,1/A/1506:1508	NA	NA
52	IL_6HMA_057 ➜	1/A/1695:1700,1/A/2031:2033	NA	NA
53	IL_6HMA_058 ➜	1/A/1707:1709,1/A/2022:2024	NA	NA
54	IL_6HMA_059 ➜	1/A/1710:1713,1/A/2020:2021	NA	NA
55	IL_6HMA_060 ➜	1/A/1713:1718,1/A/2017:2020	NA	NA
56	IL_6HMA_061 ➜	1/A/1730:1735,1/A/1740:1746	NA	NA
57	IL_6HMA_062 ➜	1/A/1757:1759,1/A/1770:1772	NA	NA
58	IL_6HMA_063 ➜	1/A/1797:1798,1/A/2007:2009	NA	NA
59	IL_6HMA_064 ➜	1/A/1825:1831,1/A/1840:1848	NA	NA
60	IL_6HMA_065 ➜	1/A/1864:1867,1/A/1929:1930	NA	NA
61	IL_6HMA_066 ➜	1/A/1868:1869,1/A/1925:1928	NA	NA
62	IL_6HMA_070 ➜	1/A/1960:1961,1/A/1991:1994	NA	NA
63	IL_6HMA_071 ➜	1/A/1961:1972,1/A/1988:1991	NA	NA
64	IL_6HMA_072 ➜	1/A/2077:2079,1/A/2644:2645	NA	NA
65	IL_6HMA_073 ➜	1/A/2081:2083,1/A/2639:2642	NA	NA
66	IL_6HMA_074 ➜	1/A/2094:2096,1/A/2469:2470	NA	NA
67	IL_6HMA_075 ➜	1/A/2097:2098,1/A/2465:2468	NA	NA
68	IL_6HMA_076 ➜	1/A/2108:2110,1/A/2263:2266	NA	NA
69	IL_6HMA_077 ➜	1/A/2123:2126,1/A/2217:2220	NA	NA
70	IL_6HMA_082 ➜	1/A/2229:2231,1/A/2247:2248	NA	NA
71	IL_6HMA_083 ➜	1/A/2324:2326,1/A/2344:2348	NA	NA
72	IL_6HMA_084 ➜	1/A/2377:2380,1/A/2391:2394	NA	NA
73	IL_6HMA_085 ➜	1/A/2428:2430,1/A/2441:2442	NA	NA
74	IL_6HMA_086 ➜	1/A/2480:2481,1/A/2525:2527	NA	NA
75	IL_6HMA_087 ➜	1/A/2481:2482,1/A/2523:2525	NA	NA
76	IL_6HMA_088 ➜	1/A/2484:2486,1/A/2520:2521	NA	NA
77	IL_6HMA_089 ➜	1/A/2486:2488,1/A/2516:2520	NA	NA
78	IL_6HMA_090 ➜	1/A/2493:2497,1/A/2507:2511	NA	NA
79	IL_6HMA_091 ➜	1/A/2534:2535,1/A/2607:2609	NA	NA
80	IL_6HMA_092 ➜	1/A/2537:2539,1/A/2601:2605	NA	NA
81	IL_6HMA_093 ➜	1/A/2539:2540,1/A/2598:2601	NA	NA
82	IL_6HMA_094 ➜	1/A/2549:2550,1/A/2567:2570	NA	NA
83	IL_6HMA_095 ➜	1/A/2618:2619,1/A/2628:2630	NA	NA
84	IL_6HMA_096 ➜	1/A/2663:2667,1/A/2801:2809	NA	NA
85	IL_6HMA_097 ➜	1/A/2679:2685,1/A/2690:2695	NA	NA
86	IL_6HMA_098 ➜	1/A/2707:2711,1/A/2752:2754	NA	NA
87	IL_6HMA_099 ➜	1/A/2714:2718,1/A/2745:2749	NA	NA
88	IL_6HMA_100 ➜	1/A/2722:2723,1/A/2738:2741	NA	NA
89	IL_6HMA_101 ➜	1/A/2764:2769,1/A/2789:2794	NA	NA
90	IL_6HMA_102 ➜	1/A/2858:2859,1/A/2898:2900	NA	NA
91	IL_6HMA_103 ➜	1/A/2863:2865,1/A/2891:2894	NA	NA
92	IL_6HMA_104 ➜	1/A/2867:2872,1/A/2885:2889	NA	NA
93	IL_6HMA_105 ➜	1/B/15:16,1/B/63:65	NA	NA
94	IL_6HMA_106 ➜	1/B/21:27,1/B/53:58	NA	NA
95	IL_6HMA_107 ➜	1/B/28:30,1/B/48:52	NA	NA
96	IL_6HMA_108 ➜	1/B/32:36,1/B/42:46	NA	NA
97	IL_6HMA_109 ➜	1/B/69:77,1/B/94:102	NA	NA
98	IL_6HMA_110 ➜	1/B/78:80,1/B/91:93	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_6HMA_010 ➜	missing nts	NA
2	IL_6HMA_040 ➜	missing nts	NA
3	IL_6HMA_054 ➜	missing nts	NA
4	IL_6HMA_055 ➜	missing nts	NA
5	IL_6HMA_056 ➜	missing nts	NA
6	IL_6HMA_067 ➜	missing nts	NA
7	IL_6HMA_068 ➜	missing nts	NA
8	IL_6HMA_069 ➜	missing nts	NA
9	IL_6HMA_078 ➜	missing nts	NA
10	IL_6HMA_079 ➜	missing nts	NA
11	IL_6HMA_080 ➜	missing nts	NA
12	IL_6HMA_081 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	J3_6HMA_001 ➜	1/A/30:31,1/A/520:527,1/A/554:555	NA	NA
2	J3_6HMA_002 ➜	1/A/56:67,1/A/74:76,1/A/109:113	NA	NA
3	J3_6HMA_003 ➜	1/A/272:276,1/A/295:302,1/A/415:416	NA	NA
4	J3_6HMA_004 ➜	1/A/728:734,1/A/818:820,1/A/836:839	NA	NA
5	J3_6HMA_005 ➜	1/A/743:745,1/A/777:781,1/A/805:808	NA	NA
6	J3_6HMA_006 ➜	1/A/1335:1340,1/A/1669:1671,1/A/1683:1686	NA	NA
7	J3_6HMA_007 ➜	1/A/1342:1346,1/A/1649:1655,1/A/1664:1667	NA	NA
8	J3_6HMA_008 ➜	1/A/1485:1490,1/A/1508:1511,1/A/1570:1598	NA	NA
9	J3_6HMA_009 ➜	1/A/2118:2120,1/A/2223:2229,1/A/2248:2255	NA	NA
10	J3_6HMA_010 ➜	1/A/2322:2324,1/A/2348:2350,1/A/2359:2364	NA	NA
11	J3_6HMA_011 ➜	1/A/2544:2547,1/A/2572:2574,1/A/2588:2594	NA	NA
12	J3_6HMA_012 ➜	1/A/2834:2835,1/A/2851:2856,1/A/2902:2906	NA	NA
13	J3_6HMA_013 ➜	1/B/9:14,1/B/66:68,1/B/103:106	NA	NA

Problematic loops

No problematic loops

Coloring options: Nucleotide numbers

6HMA Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops