6LQV Summary
- Structure Title
- 6LQV Summary
- Authors
- Release Date
- 2020-09-16
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
- Chains
-
- 3 RNA chains from Saccharomyces cerevisiae
- 55 other chains
- Compounds
- U3 snoRNA, rRNA 2'-O-methyltransferase fibrillarin, rRNA 2'-O-methyltransferase fibrillarin, Nucleolar protein 56, Nucleolar protein 58, Ribosomal RNA-processing protein 9, 13 kDa ribonucleoprotein-associated protein, 13 kDa ribonucleoprotein-associated protein, 5' ETS, Bud site selection protein 21, U3 small nucleolar RNA-associated protein 7, U3 small nucleolar RNA-associated protein 11, U3 small nucleolar RNA-associated protein MPP10, U3 small nucleolar ribonucleoprotein protein IMP3, U3 small nucleolar ribonucleoprotein protein IMP4, Something about silencing protein 10, Protein SOF1, rRNA-processing protein FCF2, rRNA-processing protein FCF1, U3 small nucleolar RNA-associated protein 4, U3 small nucleolar RNA-associated protein 5, U3 small nucleolar RNA-associated protein 8, U3 small nucleolar RNA-associated protein 9, U3 small nucleolar RNA-associated protein 10, U3 small nucleolar RNA-associated protein 15, NET1-associated nuclear protein 1, Periodic tryptophan protein 2, U3 small nucleolar RNA-associated protein 12, U3 small nucleolar RNA-associated protein 13, U3 small nucleolar RNA-associated protein 6, U3 small nucleolar RNA-associated protein 18, U3 small nucleolar RNA-associated protein 21, Ribosome biogenesis protein ENP2, U3 small nucleolar ribonucleoprotein protein LCP5, Ribosomal RNA small subunit methyltransferase NEP1, Ribosomal RNA small subunit methyltransferase NEP1, Ribosome biogenesis protein BMS1, RNA 3'-terminal phosphate cyclase-like protein, RNA cytidine acetyltransferase, RNA cytidine acetyltransferase, Nucleolar complex protein 14, Nucleolar complex protein 4, U3 small nucleolar RNA-associated protein 20, U3 small nucleolar RNA-associated protein 14, Essential nuclear protein 1, Protein BFR2, 18S pre-rRNA, 40S ribosomal protein S4-A, 40S ribosomal protein S5, 40S ribosomal protein S6-A, 40S ribosomal protein S8-A, 40S ribosomal protein S9-A, 40S ribosomal protein S11-A, 40S ribosomal protein S16-A, 40S ribosomal protein S23-A, 40S ribosomal protein S24-A, 40S ribosomal protein S28-A, Unassigned helices
Pairwise Interactions
Interactions annotated by FR3D:- 355 base-pairs
- 1,047 base-stacking
- 465 base-phosphate
- 40 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 6LQV contains:- 45 internal loops from 0 motif groups
- 24 hairpin loops from 0 motif groups
- 5 three-way junctions
3D Redundancy
6LQV has chains which belong to the following equivalence classes in the current representative set:- NR_20.0_03510.46 (1)
- NR_all_03510.46 (1)
Similar structures
4V88 6T83 6KE6 5MC6 7NRC 4U56 6LQP 4U56 6SV4 6EML 6T83 6XIQ 5JUS 6GQB 6Y7C 5JUU 5JUT 6RBE 5JUO 4U53 6RBD 6S47 4U3N 4U51 4U50 6T7I 4U4N 5M1J 4U55 4U4Y 4U51 4U53 5JUP 4U50 6FAI 6Z6J 6Z6K 6TNU 4U55 6GQV 7NRD 6ZCE 7AJT 6LQT 3J6Y 3J6X 3J77 3J78 6ZU9 6ZQF 4V8Z 7D5T 5TZS 6ZQE 6LQR 5WYJ 4V6I 6I7O 5WYK 7D5S 6ZQG 4U4O 4U4O 6LQU 4V8Y 7D4I 6ZQD 6GQ1 7AJU 6LQS 5LL6 6LQQ 7SUK 6ZQB 6ZQC 5WLC 6I7O 7D63 6T7T 5TBW 5NDG 5NDG 5TGM 5TGM 4V7R 4V7R 5DAT 5TGA 5DGE 5DGV 5DGF 5DC3 5DAT 5TGA 5DGV 5DGE 5DGF 5ON6 5NDV 5NDV 4V88 5TBW 7OSA 6HHQ 5OBM 5I4L 5MEI 5NDW 5LYB 5I4L 5OBM 7OSM 5MEI 5ON6 5NDW 6HHQ 5LYB 5DC3 7PZY 4U52 4U3M 7RR5 4U52 4U4U 4U6F 4U4Q 4U4N 6Q8Y 4U6F 4U4Z 6XIR 7B7D 6SV4 6SV4 4U4Y 4U3N 4U4U 4U4Q 4U3M 7Q08 6T4Q 7MPJ 7Q0F 7Q0R 7Q0P 6WOO 4U4R 6TB3 6SNT 4U4R 4U3U 7A1G 6ZVI 4U3U 7N8B 7MPI 4U4ZStructures from NR_all_03510.46