Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6MTC_0011/4/13:22No text annotation
Not in a motif group
HL_6MTC_0021/4/31:39No text annotation
Not in a motif group
homologous
HL_5UD5_002
HL_49288.1
HL_6MTC_0031/4/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_3TUP_003
HL_71309.1
HL_6MTC_0041/5/37:44No text annotation
Not in a motif group
geometric
HL_5TBW_001
HL_06192.2
HL_6MTC_0051/5/68:73No text annotation
Not in a motif group
homologous
HL_8C3A_002
HL_02862.2
HL_6MTC_0061/5/89:95No text annotation
Not in a motif group
homologous
HL_5TBW_003
HL_67216.7
HL_6MTC_0071/5/131:137No text annotation
Not in a motif group
geometric
HL_5TBW_006
HL_98984.2
HL_6MTC_0081/5/204:211No text annotation
Not in a motif group
homologous
HL_8C3A_005
HL_89380.2
HL_6MTC_0091/5/222:226No text annotation
Not in a motif group
homologous
HL_5TBW_006
HL_98984.2
HL_6MTC_0101/5/230:238No text annotation
Not in a motif group
HL_6MTC_0111/5/289:298No text annotation
Not in a motif group
homologous
HL_8C3A_008
HL_71554.2
HL_6MTC_0121/5/314:323No text annotation
Not in a motif group
homologous
HL_8C3A_009
HL_12078.2
HL_6MTC_0131/5/367:374No text annotation
Not in a motif group
geometric
HL_7A0S_056
HL_84085.2
HL_6MTC_0141/5/392:399No text annotation
Not in a motif group
geometric
HL_4WF9_041
HL_49288.1
HL_6MTC_0151/5/759:904No text annotation
Not in a motif group
HL_6MTC_0161/5/961:971No text annotation
Not in a motif group
HL_6MTC_0171/5/989:1065No text annotation
Not in a motif group
HL_6MTC_0181/5/1178:1183No text annotation
Not in a motif group
HL_6MTC_0191/5/1315:1328No text annotation
Not in a motif group
geometric
HL_3FOZ_004
HL_25462.2
HL_6MTC_0201/5/1364:1373No text annotation
Not in a motif group
HL_6MTC_0211/5/1389:1394No text annotation
Not in a motif group
homologous
HL_8C3A_016
HL_42097.1
HL_6MTC_0221/5/1406A:1411BNo text annotation
Not in a motif group
HL_6MTC_0231/5/1436:1448No text annotation
Not in a motif group
HL_6MTC_0241/5/1479:1486No text annotation
Not in a motif group
HL_6MTC_0251/5/1561:1566No text annotation
Not in a motif group
homologous
HL_8C3A_019
HL_42097.1
HL_6MTC_0261/5/1593:1602No text annotation
Not in a motif group
homologous
HL_5TBW_020
HL_39334.6
HL_6MTC_0271/5/1627:1635No text annotation
Not in a motif group
homologous
HL_8C3A_021
HL_33817.1
HL_6MTC_0281/5/1675:1680No text annotation
Not in a motif group
homologous
HL_8C3A_022
HL_96598.1
HL_6MTC_0291/5/1763:1769No text annotation
Not in a motif group
geometric
HL_7A0S_005
HL_30784.2
HL_6MTC_0301/5/1816:1823No text annotation
Not in a motif group
geometric
HL_5J7L_024
HL_71554.2
HL_6MTC_0311/5/1864:1870GNRA
Not in a motif group
geometric
HL_5TBW_025
HL_42097.1
HL_6MTC_0321/5/1886:1893No text annotation
Not in a motif group
homologous
HL_5TBW_026
HL_64430.2
HL_6MTC_0331/5/1973:1993No text annotation
Not in a motif group
HL_6MTC_0341/5/2006:2013No text annotation
Not in a motif group
homologous
HL_8C3A_028
HL_84085.2
HL_6MTC_0351/5/2087:2270No text annotation
Not in a motif group
HL_6MTC_0361/5/2317:2322No text annotation
Not in a motif group
homologous
HL_8C3A_030
HL_42097.1
HL_6MTC_0371/5/2376:2384No text annotation
Not in a motif group
HL_6MTC_0381/5/2420:2426No text annotation
Not in a motif group
homologous
HL_8C3A_032
HL_46680.1
HL_6MTC_0391/5/2458:2463No text annotation
Not in a motif group
homologous
HL_8C3A_033
HL_76539.2
HL_6MTC_0401/5/2487:2491No text annotation
Not in a motif group
geometric
HL_5TBW_044
HL_09829.1
HL_6MTC_0411/5/2523:2532No text annotation
Not in a motif group
geometric
HL_4V9F_037
HL_69023.2
HL_6MTC_0421/5/2561:2566GNRA
Not in a motif group
geometric
HL_5F9F_003
HL_42097.1
HL_6MTC_0431/5/2578:2583No text annotation
Not in a motif group
homologous
HL_8C3A_036
HL_42097.1
HL_6MTC_0441/5/2624:2632No text annotation
Not in a motif group
homologous
HL_8C3A_037
HL_60812.1
HL_6MTC_0451/5/2664:2670No text annotation
Not in a motif group
homologous
HL_8C3A_038
HL_86373.2
HL_6MTC_0461/5/2705:2710No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_76539.2
HL_6MTC_0471/5/2738:2742No text annotation
Not in a motif group
homologous
HL_8C3A_040
HL_49678.1
HL_6MTC_0481/5/2792:2799No text annotation
Not in a motif group
homologous
HL_5TBW_041
HL_64430.2
HL_6MTC_0491/5/2810:2816GNRA with one bulged base
Not in a motif group
homologous
HL_5TBW_042
HL_42097.1
HL_6MTC_0501/5/2872:2877UNCG
Not in a motif group
geometric
HL_4V9F_044
HL_03562.2
HL_6MTC_0511/5/2901:3598No text annotation
Not in a motif group
HL_6MTC_0521/5/3614:3618No text annotation
Not in a motif group
homologous
HL_8C3A_045
HL_20062.1
HL_6MTC_0531/5/3639:3649No text annotation
Not in a motif group
homologous
HL_5TBW_046
HL_43613.5
HL_6MTC_0541/5/3668:3674No text annotation
Not in a motif group
homologous
HL_8C3A_047
HL_42097.1
HL_6MTC_0551/5/3722:3731No text annotation
Not in a motif group
HL_6MTC_0561/5/3757:3767No text annotation
Not in a motif group
HL_6MTC_0571/5/3796:3804No text annotation
Not in a motif group
homologous
HL_8C3A_050
HL_51824.1
HL_6MTC_0581/5/3873:3882No text annotation
Not in a motif group
HL_6MTC_0591/5/3970:4052No text annotation
Not in a motif group
HL_6MTC_0601/5/4193:4201No text annotation
Not in a motif group
HL_6MTC_0611/5/4210:4222No text annotation
Not in a motif group
HL_6MTC_0621/5/4250:4258No text annotation
Not in a motif group
homologous
HL_8C3A_057
HL_76406.4
HL_6MTC_0631/5/4270:4277No text annotation
Not in a motif group
homologous
HL_5TBW_057
HL_12078.2
HL_6MTC_0641/5/4301:4309No text annotation
Not in a motif group
homologous
HL_8C3A_059
HL_92229.2
HL_6MTC_0651/5/4321:4326No text annotation
Not in a motif group
homologous
HL_8C3A_060
HL_42097.1
HL_6MTC_0661/5/4352:4362No text annotation
Not in a motif group
HL_6MTC_0671/5/4417:4425No text annotation
Not in a motif group
homologous
HL_5TBW_061
HL_06192.2
HL_6MTC_0681/5/4474:4481No text annotation
Not in a motif group
homologous
HL_5TBW_062
HL_88526.2
HL_6MTC_0691/5/4497:4503No text annotation
Not in a motif group
geometric
HL_5TBW_063
HL_43656.2
HL_6MTC_0701/5/4540:4545GNRA
Not in a motif group
homologous
HL_5TBW_064
HL_42097.1
HL_6MTC_0711/5/4603:4608GNRA
Not in a motif group
homologous
HL_5TBW_065
HL_42097.1
HL_6MTC_0721/5/4646:4651No text annotation
Not in a motif group
homologous
HL_8C3A_067
HL_46680.1
HL_6MTC_0731/5/4688:4702No text annotation
Not in a motif group
HL_6MTC_0741/5/4776:4859No text annotation
Not in a motif group
HL_6MTC_0751/5/4906:4915No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_76539.2
HL_6MTC_0761/5/4975:4983No text annotation
Not in a motif group
homologous
HL_8C3A_071
HL_27930.1
HL_6MTC_0771/5/5021:5028No text annotation
Not in a motif group
HL_6MTC_0781/7/36:41No text annotation
Not in a motif group
homologous
HL_5TBW_185
HL_87939.1
HL_6MTC_0791/7/86:91GNRA
Not in a motif group
homologous
HL_5TBW_186
HL_42097.1
HL_6MTC_0801/8/47:56No text annotation
Not in a motif group
geometric
HL_7A0S_001
HL_99167.1
HL_6MTC_0811/8/68:90No text annotation
Not in a motif group
HL_6MTC_0821/8/107:112No text annotation
Not in a motif group
homologous
HL_5TBW_075
HL_87939.1
HL_6MTC_0831/8/121:129No text annotation
Not in a motif group
HL_6MTC_0841/9/7:17No text annotation
Not in a motif group
homologous
HL_4V88_186
HL_89881.2
HL_6MTC_0851/9/69:80No text annotation
Not in a motif group
HL_6MTC_0861/9/156:162Other HL
Not in a motif group
homologous
HL_4V88_188
HL_76539.2
HL_6MTC_0871/9/197:202No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_6MTC_0881/9/288:295T-loop with 1 bulged base
Not in a motif group
geometric
HL_4V88_191
HL_27930.1
HL_6MTC_0891/9/322:329No text annotation
Not in a motif group
HL_6MTC_0901/9/377:387No text annotation
Not in a motif group
HL_6MTC_0911/9/416:421No text annotation
Not in a motif group
homologous
HL_4V88_194
HL_50142.2
HL_6MTC_0921/9/441:452No text annotation
Not in a motif group
homologous
HL_4V88_195
HL_84288.1
HL_6MTC_0931/9/462:467UNCG
Not in a motif group
homologous
HL_4V88_196
HL_03562.2
HL_6MTC_0941/9/498:504No text annotation
Not in a motif group
homologous
HL_4V88_197
HL_09136.1
HL_6MTC_0951/9/539:544No text annotation
Not in a motif group
geometric
HL_7RQB_016
HL_42097.1
HL_6MTC_0961/9/569:581No text annotation
Not in a motif group
homologous
HL_4V88_199
HL_06285.2
HL_6MTC_0971/9/618:623Other HL
Not in a motif group
homologous
HL_4V88_200
HL_53845.1
HL_6MTC_0981/9/820:828No text annotation
Not in a motif group
homologous
HL_4V88_203
HL_46766.2
HL_6MTC_0991/9/833:841No text annotation
Not in a motif group
HL_6MTC_1001/9/885:901No text annotation
Not in a motif group
homologous
HL_4V88_205
HL_96598.1
HL_6MTC_1011/9/957:966No text annotation
Not in a motif group
homologous
HL_4V88_206
HL_12326.1
HL_6MTC_1021/9/994:999Other HL
Not in a motif group
homologous
HL_4V88_207
HL_87030.2
HL_6MTC_1031/9/1054:1064No text annotation
Not in a motif group
homologous
HL_4V88_208
HL_12326.1
HL_6MTC_1041/9/1114:1119No text annotation
Not in a motif group
HL_6MTC_1051/9/1141:1146Other HL
Not in a motif group
homologous
HL_4V88_210
HL_42097.1
HL_6MTC_1061/9/1178:1183GNRA
Not in a motif group
homologous
HL_4V88_211
HL_42097.1
HL_6MTC_1071/9/1245:1254No text annotation
Not in a motif group
HL_6MTC_1081/9/1295:1304No text annotation
Not in a motif group
homologous
HL_4V88_213
HL_53597.2
HL_6MTC_1091/9/1353:1358GNRA
Not in a motif group
homologous
HL_4V88_214
HL_42097.1
HL_6MTC_1101/9/1366:1373No text annotation
Not in a motif group
homologous
HL_4V88_215
HL_71554.2
HL_6MTC_1111/9/1416:1424No text annotation
Not in a motif group
HL_6MTC_1121/9/1460:1466No text annotation
Not in a motif group
homologous
HL_4V88_217
HL_42097.1
HL_6MTC_1131/9/1565:1570GNRA
Not in a motif group
homologous
HL_4V88_218
HL_42097.1
HL_6MTC_1141/9/1614:1625No text annotation
Not in a motif group
homologous
HL_4V88_219
HL_22554.1
HL_6MTC_1151/9/1658:1666No text annotation
Not in a motif group
homologous
HL_4V88_220
HL_60812.1
HL_6MTC_1161/9/1760:1772No text annotation
Not in a motif group
HL_6MTC_1171/9/1847:1852Other HL
Not in a motif group
homologous
HL_4V88_222
HL_16173.1

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6MTC_0011/5/6:7,
1/8/149:151
No text annotation
Not in a motif group
homologous
IL_8C3A_002
IL_61258.12
IL_6MTC_0021/5/12:14,
1/8/143:144
No text annotation
Not in a motif group
homologous
IL_8C3A_003
IL_83039.13
IL_6MTC_0031/5/16:18,
1/8/139:141
No text annotation
Not in a motif group
geometric
IL_1Y27_001
IL_51629.2
IL_6MTC_0041/5/26:27,
1/5/55:57
No text annotation
Not in a motif group
homologous
IL_8C3A_004
IL_76488.2
IL_6MTC_0051/5/30:37,
1/5/44:52
9x8 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_4WF9_008
IL_35728.2
IL_6MTC_0061/5/81:88,
1/5/96:102
No text annotation
Not in a motif group
homologous
IL_8C3A_006
IL_88613.1
IL_6MTC_0071/5/118:121,
1/5/152:153
Stack outside cWW
Not in a motif group
geometric
IL_5J7L_268
IL_37629.1
IL_6MTC_0081/5/121:122,
1/5/147:152
No text annotation
Not in a motif group
geometric
IL_5TBW_007
IL_19724.2
IL_6MTC_0091/5/125:126,
1/5/142:144
Single bulged C
Not in a motif group
geometric
IL_1S03_006
IL_61258.12
IL_6MTC_0101/5/168:173,
1/5/263:267
No text annotation
Not in a motif group
IL_6MTC_0111/5/180:182,
1/5/255:256
Single stack bend
Not in a motif group
geometric
IL_5J7L_249
IL_76488.2
IL_6MTC_0121/5/182:189,
1/5/252:255
No text annotation
Not in a motif group
geometric
IL_6AZ4_001
IL_69145.1
IL_6MTC_0131/5/195:196,
1/5/244:246
Single bulged C
Not in a motif group
geometric
IL_1DQF_001
IL_61258.12
IL_6MTC_0141/5/199:201,
1/5/214:215
No text annotation
Not in a motif group
homologous
IL_8C3A_013
IL_83039.13
IL_6MTC_0151/5/339:342,
1/8/32:33
Minor groove platform
Not in a motif group
geometric
IL_7RQB_073
IL_88739.1
IL_6MTC_0161/5/348:350,
1/8/25:26
No text annotation
Not in a motif group
homologous
IL_8C3A_014
IL_37497.2
IL_6MTC_0171/5/387:390,
1/5/401:414
No text annotation
Not in a motif group
homologous
IL_8C3A_015
IL_60992.6
IL_6MTC_0181/5/415:421,
1/8/13:19
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_5TBW_015
IL_66414.6
IL_6MTC_0191/5/443:446,
1/5/1300:1304
No text annotation
Not in a motif group
geometric
IL_6AZ4_001
IL_69145.1
IL_6MTC_0201/5/448:450,
1/5/1297:1298
No text annotation
Not in a motif group
IL_6MTC_0211/5/459:460,
1/5/695:697
No text annotation
Not in a motif group
IL_6MTC_0221/5/462:464,
1/5/691:693
No text annotation
Not in a motif group
geometric
IL_5TBW_127
IL_95997.1
IL_6MTC_0231/5/466:472,
1/5/682:689
No text annotation
Not in a motif group
IL_6MTC_0241/5/480:482,
1/5/672:674
Decoding loop related
Not in a motif group
geometric
IL_2O3X_003
IL_82842.2
IL_6MTC_0251/5/482:485,
1/5/671:672
Multiple bulged bases
Not in a motif group
geometric
IL_6JXM_001
IL_69996.1
IL_6MTC_0261/5/487:488,
1/5/665:669
Multiple bulged bases
Not in a motif group
geometric
IL_1R3E_002
IL_59677.2
IL_6MTC_0271/5/491:493,
1/5/661:662
Single bulged U
Not in a motif group
geometric
IL_4WF9_030
IL_83039.13
IL_6MTC_0281/5/497:499,
1/5/656:657
No text annotation
Not in a motif group
IL_6MTC_0291/5/508:510,
1/5/649:650
Single bulged A
Not in a motif group
geometric
IL_6WPI_001
IL_37497.2
IL_6MTC_0301/5/519:521,
1/5/641:642
Single stack bend
Not in a motif group
geometric
IL_5TBW_009
IL_76488.2
IL_6MTC_0311/5/521:523,
1/5/638:641
No text annotation
Not in a motif group
geometric
IL_4WSM_372
IL_33061.1
IL_6MTC_0321/5/709:710,
1/5/1286:1288
Single bulged G
Not in a motif group
geometric
IL_4LFB_036
IL_00225.2
IL_6MTC_0331/5/723:724,
1/5/942:945
Multiple bulged bases
Not in a motif group
geometric
IL_7V9E_001
IL_59677.2
IL_6MTC_0341/5/727:731,
1/5/938:939
No text annotation
Not in a motif group
IL_6MTC_0351/5/732:735,
1/5/928:937
No text annotation
Not in a motif group
IL_6MTC_0361/5/737:739,
1/5/923:926
No text annotation
Not in a motif group
geometric
IL_5J7L_341
IL_71530.2
IL_6MTC_0371/5/739:740,
1/5/922:923
Multiple bulged bases
Not in a motif group
geometric
IL_7V9E_001
IL_59677.2
IL_6MTC_0381/5/740:743,
1/5/921:922
No text annotation
Not in a motif group
geometric
IL_6AZ4_001
IL_69145.1
IL_6MTC_0391/5/745:752,
1/5/911:919
No text annotation
Not in a motif group
geometric
IL_5TBW_020
IL_07703.1
IL_6MTC_0401/5/1075:1076,
1/5/1234:1236
Single stack bend
Not in a motif group
geometric
IL_5J7L_032
IL_76488.2
IL_6MTC_0411/5/1077:1080,
1/5/1219:1233
No text annotation
Not in a motif group
IL_6MTC_0421/5/1082:1084,
1/5/1213:1217
Isolated near basepair
Not in a motif group
geometric
IL_7A0S_030
IL_52767.2
IL_6MTC_0431/5/1086:1087,
1/5/1209:1211
No text annotation
Not in a motif group
IL_6MTC_0441/5/1097:1098,
1/5/1197:1199
Single stack bend
Not in a motif group
geometric
IL_5J7L_249
IL_76488.2
IL_6MTC_0451/5/1100:1168,
1/5/1193:1195
No text annotation
Not in a motif group
IL_6MTC_0461/5/1173:1175,
1/5/1186:1188
Isolated cWH basepair
Not in a motif group
geometric
IL_3W3S_003
IL_51629.2
IL_6MTC_0471/5/1347:1349,
1/5/1507:1509
No text annotation
Not in a motif group
IL_6MTC_0481/5/1357:1360,
1/5/1379:1382
No text annotation
Not in a motif group
IL_6MTC_0491/5/1360:1361,
1/5/1376:1379
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
geometric
IL_1U9S_003
IL_69996.1
IL_6MTC_0501/5/1425:1429,
1/5/1455:1460
No text annotation
Not in a motif group
IL_6MTC_0511/5/1431:1434,
1/5/1450:1453
Double sheared
Not in a motif group
geometric
IL_4WF9_087
IL_09705.9
IL_6MTC_0521/5/1467:1468,
1/5/1496:1498
No text annotation
Not in a motif group
homologous
IL_8C3A_026
IL_37497.2
IL_6MTC_0531/5/1474:1476,
1/5/1489:1490
Single stack bend
Not in a motif group
geometric
IL_7A0S_005
IL_76488.2
IL_6MTC_0541/5/1520:1526,
1/5/1648:1657
No text annotation
Not in a motif group
IL_6MTC_0551/5/1550:1551,
1/5/1576:1578
No text annotation
Not in a motif group
homologous
IL_8C3A_032
IL_00225.2
IL_6MTC_0561/5/1551:1555,
1/5/1572:1576
No text annotation
Not in a motif group
IL_6MTC_0571/5/1586:1590,
1/5/1604:1607
No text annotation
Not in a motif group
IL_6MTC_0581/5/1590:1592,
1/5/1603:1604
No text annotation
Not in a motif group
homologous
IL_8C3A_035
IL_83039.13
IL_6MTC_0591/5/1624:1626,
1/5/1636:1640
Multiple bulged bases
Not in a motif group
geometric
IL_5TBW_033
IL_90991.6
IL_6MTC_0601/5/1671:1673,
1/5/1682:1684
No text annotation
Not in a motif group
homologous
IL_8C3A_037
IL_95997.1
IL_6MTC_0611/5/1685:1688,
1/5/1848:1852
No text annotation
Not in a motif group
IL_6MTC_0621/5/1694:1721,
1/5/1841:1842
No text annotation
Not in a motif group
IL_6MTC_0631/5/1723:1725,
1/5/1838:1839
No text annotation
Not in a motif group
homologous
IL_8C3A_040
IL_00225.2
IL_6MTC_0641/5/1731:1737,
1/5/1792:1798
No text annotation
Not in a motif group
IL_6MTC_0651/5/1737:1738,
1/5/1790:1792
No text annotation
Not in a motif group
homologous
IL_8C3A_042
IL_42622.2
IL_6MTC_0661/5/1739:1744,
1/5/1786:1789
No text annotation
Not in a motif group
homologous
IL_8C3A_043
IL_02509.1
IL_6MTC_0671/5/1746:1749,
1/5/1781:1784
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5TBW_041
IL_30621.2
IL_6MTC_0681/5/1749:1751,
1/5/1779:1781
No text annotation
Not in a motif group
geometric
IL_5TBW_042
IL_95997.1
IL_6MTC_0691/5/1753:1756,
1/5/1776:1777
Major groove platform
Not in a motif group
geometric
IL_4WF9_078
IL_27635.1
IL_6MTC_0701/5/1760:1763,
1/5/1769:1772
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4EYA_010
IL_30621.2
IL_6MTC_0711/5/1814:1816,
1/5/1823:1824
Single bulged A
Not in a motif group
homologous
IL_5TBW_045
IL_37497.2
IL_6MTC_0721/5/1858:1861,
1/5/1873:1876
No text annotation
Not in a motif group
IL_6MTC_0731/5/1861:1864,
1/5/1870:1873
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_402D_001
IL_30621.2
IL_6MTC_0741/5/1905:1910,
1/5/2066:2071
No text annotation
Not in a motif group
IL_6MTC_0751/5/1911:1918,
1/5/2064:2065
SSU/LSU pseudoknot
Not in a motif group
geometric
IL_7RQB_037
IL_15861.7
IL_6MTC_0761/5/1918:1920,
1/5/2063:2064
No text annotation
Not in a motif group
IL_6MTC_0771/5/1920:1922,
1/5/2062:2063
No text annotation
Not in a motif group
IL_6MTC_0781/5/1926:1933,
1/5/2053:2058
No text annotation
Not in a motif group
homologous
IL_5TBW_051
IL_27086.1
IL_6MTC_0791/5/1933:1944,
1/5/2038:2053
No text annotation
Not in a motif group
geometric
IL_5TBW_052
IL_53762.1
IL_6MTC_0801/5/1946:1948,
1/5/2035:2036
Single bulged U
Not in a motif group
homologous
IL_5TBW_053
IL_83039.13
IL_6MTC_0811/5/1957:1965,
1/5/2022:2026
No text annotation
Not in a motif group
homologous
IL_8C3A_057
IL_90538.4
IL_6MTC_0821/5/2001:2005,
1/5/2014:2016
No text annotation
Not in a motif group
homologous
IL_8C3A_059
IL_05564.2
IL_6MTC_0831/5/2083:2085,
1/5/2272:2273
Single bulged U
Not in a motif group
geometric
IL_5TBW_032
IL_83039.13
IL_6MTC_0841/5/2290:2292,
1/5/2342:2345
No text annotation
Not in a motif group
homologous
IL_8C3A_061
IL_52767.2
IL_6MTC_0851/5/2296:2298,
1/5/2336:2338
No text annotation
Not in a motif group
IL_6MTC_0861/5/2299:2301,
1/5/2334:2335
No text annotation
Not in a motif group
homologous
IL_8C3A_062
IL_37497.2
IL_6MTC_0871/5/2302:2309,
1/5/2329:2333
Kink-turn
Not in a motif group
homologous
IL_5TBW_059
IL_70923.2
IL_6MTC_0881/5/2312:2314,
1/5/2325:2326
Single bulged A
Not in a motif group
geometric
IL_5WWT_001
IL_37497.2
IL_6MTC_0891/5/2415:2419,
1/5/2427:2429
C-loop
Not in a motif group
geometric
IL_7A0S_047
IL_37712.2
IL_6MTC_0901/5/2446:2450,
1/5/2509:2514
No text annotation
Not in a motif group
homologous
IL_8C3A_067
IL_89002.2
IL_6MTC_0911/5/2477:2479,
1/5/2499:2500
Single stack bend
Not in a motif group
geometric
IL_7RQB_058
IL_76488.2
IL_6MTC_0921/5/2521:2523,
1/5/2532:2534
No text annotation
Not in a motif group
geometric
IL_5VCI_002
IL_95997.1
IL_6MTC_0931/5/2542:2547,
1/5/2772:2774
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_4RUM_001
IL_82068.2
IL_6MTC_0941/5/2549:2550,
1/5/2768:2770
Single bulged U
Not in a motif group
geometric
IL_2A64_002
IL_83039.13
IL_6MTC_0951/5/2589:2593,
1/5/2752:2756
No text annotation
Not in a motif group
IL_6MTC_0961/5/2613:2614,
1/5/2724:2726
No text annotation
Not in a motif group
homologous
IL_8C3A_075
IL_61258.12
IL_6MTC_0971/5/2614:2615,
1/5/2722:2724
Single stack bend
Not in a motif group
geometric
IL_5TBW_070
IL_76488.2
IL_6MTC_0981/5/2646:2648,
1/5/2685:2688
Isolated tHS basepair with bulges
Not in a motif group
geometric
IL_4V9F_076
IL_38958.7
IL_6MTC_0991/5/2651:2653,
1/5/2681:2682
Single bulged G
Not in a motif group
geometric
IL_3NDB_004
IL_00225.2
IL_6MTC_1001/5/2656:2662,
1/5/2672:2678
Kink-turn
Not in a motif group
homologous
IL_5TBW_073
IL_60192.2
IL_6MTC_1011/5/2704:2705,
1/5/2710:2712
No text annotation
Not in a motif group
IL_6MTC_1021/5/2832:2838,
1/5/3850:3853
No text annotation
Not in a motif group
homologous
IL_5TBW_074
IL_49460.2
IL_6MTC_1031/5/2844:2846,
1/5/3842:3844
No text annotation
Not in a motif group
homologous
IL_8C3A_081
IL_54997.7
IL_6MTC_1041/5/2847:2850,
1/5/3840:3841
No text annotation
Not in a motif group
homologous
IL_8C3A_082
IL_50694.2
IL_6MTC_1051/5/2850:2855,
1/5/3837:3840
Intercalated tWH
Not in a motif group
geometric
IL_5TBW_077
IL_82842.2
IL_6MTC_1061/5/2867:2872,
1/5/2877:2883
No text annotation
Not in a motif group
homologous
IL_8C3A_084
IL_65969.2
IL_6MTC_1071/5/2889:2891,
1/5/3610:3612
No text annotation
Not in a motif group
homologous
IL_5TBW_079
IL_95997.1
IL_6MTC_1081/5/2896:2897,
1/5/3602:3605
No text annotation
Not in a motif group
homologous
IL_5TBW_080
IL_74125.1
IL_6MTC_1091/5/3632:3633,
1/5/3827:3829
Single bulged A
Not in a motif group
homologous
IL_5TBW_082
IL_37497.2
IL_6MTC_1101/5/3660:3665,
1/5/3677:3684
No text annotation
Not in a motif group
homologous
IL_8C3A_088
IL_64509.1
IL_6MTC_1111/5/3700:3703,
1/5/3749:3750
No text annotation
Not in a motif group
homologous
IL_8C3A_089
IL_88739.1
IL_6MTC_1121/5/3704:3705,
1/5/3745:3748
No text annotation
Not in a motif group
homologous
IL_8C3A_090
IL_16396.2
IL_6MTC_1131/5/3708:3710,
1/5/3741:3742
No text annotation
Not in a motif group
homologous
IL_8C3A_091
IL_76488.2
IL_6MTC_1141/5/3710:3714,
1/5/3739:3741
No text annotation
Not in a motif group
IL_6MTC_1151/5/3714:3721,
1/5/3732:3739
No text annotation
Not in a motif group
IL_6MTC_1161/5/3780:3781,
1/5/3811:3814
Multiple bulged bases
Not in a motif group
geometric
IL_5TBW_089
IL_59677.2
IL_6MTC_1171/5/3781:3793,
1/5/3807:3811
No text annotation
Not in a motif group
IL_6MTC_1181/5/3895:3898,
1/5/4563:4565
No text annotation
Not in a motif group
IL_6MTC_1191/5/3898:3900,
1/5/4561:4563
No text annotation
Not in a motif group
IL_6MTC_1201/5/3900:3902,
1/5/4558:4561
No text annotation
Not in a motif group
homologous
IL_8C3A_097
IL_54678.5
IL_6MTC_1211/5/3913:3915,
1/5/4388:4389
Single bulged U
Not in a motif group
homologous
IL_5TBW_093
IL_83039.13
IL_6MTC_1221/5/3916:3917,
1/5/4384:4387
Minor groove platform
Not in a motif group
homologous
IL_5TBW_094
IL_42622.2
IL_6MTC_1231/5/3925:3927,
1/5/4184:4186
No text annotation
Not in a motif group
IL_6MTC_1241/5/3927:3929,
1/5/4181:4184
No text annotation
Not in a motif group
homologous
IL_8C3A_100
IL_38958.7
IL_6MTC_1251/5/3948:3955,
1/5/4058:4065
No text annotation
Not in a motif group
IL_6MTC_1261/5/3956:3970,
1/5/4052:4057
No text annotation
Not in a motif group
IL_6MTC_1271/5/4082:4088,
1/5/4161:4164
No text annotation
Not in a motif group
homologous
IL_8C3A_106
IL_74114.1
IL_6MTC_1281/5/4095:4098,
1/5/4111:4113
No text annotation
Not in a motif group
geometric
IL_4P3T_002
IL_46796.1
IL_6MTC_1291/5/4099:4100,
1/5/4108:4110
No text annotation
Not in a motif group
IL_6MTC_1301/5/4191:4192,
1/5/4202:4204
Single bulged A
Not in a motif group
homologous
IL_5TBW_098
IL_37497.2
IL_6MTC_1311/5/4243:4245,
1/5/4263:4267
Isolated tHS basepair with bulges
Not in a motif group
geometric
IL_5TBW_099
IL_38958.7
IL_6MTC_1321/5/4291:4294,
1/5/4316:4318
Decoding loop related
Not in a motif group
geometric
IL_2O3X_003
IL_82842.2
IL_6MTC_1331/5/4295:4298,
1/5/4312:4315
No text annotation
Not in a motif group
IL_6MTC_1341/5/4347:4350,
1/5/4364:4365
Single stack bend
Not in a motif group
geometric
IL_7RQB_058
IL_76488.2
IL_6MTC_1351/5/4400:4405,
1/5/4439:4444
No text annotation
Not in a motif group
IL_6MTC_1361/5/4405:4407,
1/5/4435:4439
No text annotation
Not in a motif group
homologous
IL_5TBW_105
IL_92788.2
IL_6MTC_1371/5/4412:4416,
1/5/4426:4430
No text annotation
Not in a motif group
homologous
IL_8C3A_114
NA
IL_6MTC_1381/5/4453:4454,
1/5/4526:4528
No text annotation
Not in a motif group
homologous
IL_8C3A_115
IL_76223.2
IL_6MTC_1391/5/4456:4458,
1/5/4520:4524
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5TBW_108
IL_90933.2
IL_6MTC_1401/5/4458:4459,
1/5/4517:4520
No text annotation
Not in a motif group
homologous
IL_8C3A_117
IL_71530.2
IL_6MTC_1411/5/4466:4468,
1/5/4489:4491
No text annotation
Not in a motif group
homologous
IL_8C3A_118
IL_51629.2
IL_6MTC_1421/5/4468:4470,
1/5/4485:4489
No text annotation
Not in a motif group
IL_6MTC_1431/5/4493:4495,
1/5/4505:4507
No text annotation
Not in a motif group
geometric
IL_4V88_444
IL_95997.1
IL_6MTC_1441/5/4495:4497,
1/5/4503:4505
No text annotation
Not in a motif group
geometric
IL_5TBW_112
IL_95997.1
IL_6MTC_1451/5/4537:4538,
1/5/4547:4549
Single bulged A
Not in a motif group
geometric
IL_7RQB_101
IL_37497.2
IL_6MTC_1461/5/4580:4582,
1/5/4721:4723
No text annotation
Not in a motif group
geometric
IL_3ICQ_003
IL_51629.2
IL_6MTC_1471/5/4582:4585,
1/5/4717:4721
Double sheared
Not in a motif group
geometric
IL_7A0S_081
IL_09705.9
IL_6MTC_1481/5/4596:4603,
1/5/4608:4614
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_5TBW_116
IL_04346.7
IL_6MTC_1491/5/4622:4624,
1/5/4673:4675
No text annotation
Not in a motif group
geometric
IL_4WF9_042
IL_95997.1
IL_6MTC_1501/5/4624:4629,
1/5/4669:4673
No text annotation
Not in a motif group
IL_6MTC_1511/5/4632:4638,
1/5/4661:4666
No text annotation
Not in a motif group
IL_6MTC_1521/5/4638:4640,
1/5/4659:4661
Isolated cWH basepair
Not in a motif group
geometric
IL_3R1C_018
IL_51629.2
IL_6MTC_1531/5/4641:4642,
1/5/4655:4658
Multiple bulged bases
Not in a motif group
homologous
IL_5TBW_119
IL_71530.2
IL_6MTC_1541/5/4680:4685,
1/5/4705:4710
UAA/GAN with extra cWW
Not in a motif group
geometric
IL_5J7L_350
IL_49767.5
IL_6MTC_1551/5/4739:4746,
1/5/4954:4960
No text annotation
Not in a motif group
IL_6MTC_1561/5/4756:4766,
1/5/4868:4877
No text annotation
Not in a motif group
IL_6MTC_1571/5/4769:4773,
1/5/4862:4865
No text annotation
Not in a motif group
IL_6MTC_1581/5/4885:4888,
1/5/4931:4934
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4K27_003
IL_30621.2
IL_6MTC_1591/5/4890:4897,
1/5/4923:4929
No text annotation
Not in a motif group
IL_6MTC_1601/5/4898:4902,
1/5/4919:4922
No text annotation
Not in a motif group
IL_6MTC_1611/5/4972:4975,
1/5/4983:4986
No text annotation
Not in a motif group
homologous
IL_8C3A_135
IL_30621.2
IL_6MTC_1621/5/4992:4994,
1/5/5057:5059
No text annotation
Not in a motif group
geometric
IL_3D0U_006
IL_95997.1
IL_6MTC_1631/5/4996:4997,
1/5/5053:5055
No text annotation
Not in a motif group
homologous
IL_8C3A_137
IL_83039.13
IL_6MTC_1641/5/5000:5002,
1/5/5045:5050
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5TBW_132
IL_90933.2
IL_6MTC_1651/5/5003:5009,
1/5/5039:5044
No text annotation
Not in a motif group
IL_6MTC_1661/5/5012:5014,
1/5/5035:5036
No text annotation
Not in a motif group
homologous
IL_8C3A_140
IL_83039.13
IL_6MTC_1671/5/5014:5017,
1/5/5032:5035
Double sheared
Not in a motif group
geometric
IL_4V9F_100
IL_09705.9
IL_6MTC_1681/7/15:16,
1/7/62:64
Single bulged A
Not in a motif group
homologous
IL_5TBW_372
IL_37497.2
IL_6MTC_1691/7/21:27,
1/7/52:57
No text annotation
Not in a motif group
homologous
IL_5TBW_373
IL_10207.2
IL_6MTC_1701/7/28:29,
1/7/48:51
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_7RQB_113
IL_09061.6
IL_6MTC_1711/7/32:36,
1/7/41:45
Symmetric double minor groove platform
Not in a motif group
geometric
IL_7RQB_114
IL_58103.6
IL_6MTC_1721/7/71:78,
1/7/98:104
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5TBW_377
IL_04346.7
IL_6MTC_1731/7/79:81,
1/7/95:97
No text annotation
Not in a motif group
geometric
IL_7A0S_107
IL_51629.2
IL_6MTC_1741/7/82:85,
1/7/92:94
No text annotation
Not in a motif group
homologous
IL_5TBW_378
IL_95997.1
IL_6MTC_1751/8/64:66,
1/8/92:95
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5TBW_145
IL_82068.2
IL_6MTC_1761/9/23:25,
1/9/649:651
No text annotation
Not in a motif group
geometric
IL_3MEI_002
IL_95997.1
IL_6MTC_1771/9/26:28,
1/9/646:648
No text annotation
Not in a motif group
geometric
IL_5TBW_110
IL_51629.2
IL_6MTC_1781/9/34:36,
1/9/519:521
UC cWW
Not in a motif group
homologous
IL_4V88_385
IL_51629.2
IL_6MTC_1791/9/37:40,
1/9/514:518
Double sheared
Not in a motif group
geometric
IL_4WF9_016
IL_09705.9
IL_6MTC_1801/9/41:47,
1/9/479:481
No text annotation
Not in a motif group
homologous
IL_4V88_387
IL_33912.1
IL_6MTC_1811/9/49:51,
1/9/476:477
Minor groove platform
Not in a motif group
homologous
IL_4V88_388
IL_93353.1
IL_6MTC_1821/9/57:62,
1/9/86:88
No text annotation
Not in a motif group
homologous
IL_4V88_389
IL_95004.1
IL_6MTC_1831/9/63:68,
1/9/81:85
No text annotation
Not in a motif group
homologous
IL_4V88_390
IL_77691.1
IL_6MTC_1841/9/108:110,
1/9/351:353
No text annotation
Not in a motif group
geometric
IL_4P43_001
IL_95997.1
IL_6MTC_1851/9/110:112,
1/9/349:351
No text annotation
Not in a motif group
geometric
IL_4WF9_042
IL_95997.1
IL_6MTC_1861/9/112:115,
1/9/348:349
Multiple bulged bases
Not in a motif group
homologous
IL_4V88_392
IL_44546.1
IL_6MTC_1871/9/115:122,
1/9/342:348
No text annotation
Not in a motif group
IL_6MTC_1881/9/130:144,
1/9/175:182
No text annotation
Not in a motif group
IL_6MTC_1891/9/144:151,
1/9/167:175
No text annotation
Not in a motif group
IL_6MTC_1901/9/151:154,
1/9/164:167
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4WF9_109
IL_30621.2
IL_6MTC_1911/9/188:192,
1/9/207:211
Triple sheared
Not in a motif group
geometric
IL_5J7L_274
IL_56467.8
IL_6MTC_1921/9/216:219,
1/9/302:309
No text annotation
Not in a motif group
IL_6MTC_1931/9/223:288,
1/9/295:298
No text annotation
Not in a motif group
IL_6MTC_1941/9/312:314,
1/9/336:337
Single bulged A
Not in a motif group
homologous
IL_4V88_399
IL_37497.2
IL_6MTC_1951/9/317:320,
1/9/331:333
No text annotation
Not in a motif group
homologous
IL_4V88_400
IL_47298.1
IL_6MTC_1961/9/359:364,
1/9/396:403
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4V88_402
IL_45067.2
IL_6MTC_1971/9/366:371,
1/9/393:394
No text annotation
Not in a motif group
geometric
IL_5Y58_001
IL_48100.2
IL_6MTC_1981/9/411:413,
1/9/424:429
No text annotation
Not in a motif group
homologous
IL_4V88_404
IL_11347.1
IL_6MTC_1991/9/437:439,
1/9/454:456
Isolated cWH basepair
Not in a motif group
homologous
IL_4V88_405
IL_51629.2
IL_6MTC_2001/9/459:461,
1/9/468:470
Isolated near basepair
Not in a motif group
homologous
IL_4V88_406
IL_52767.2
IL_6MTC_2011/9/487:489,
1/9/511:512
Single bulged U
Not in a motif group
homologous
IL_4V88_407