6RBD | Motifs

36 Hairpin loops
87 Internal loops
12 Junction loops

Valid loops

#	loop id	location	annotation	motif
1	HL_6RBD_001 ➜	1/2/7:17	NA	NA
2	HL_6RBD_002 ➜	1/2/70:81	NA	NA
3	HL_6RBD_003 ➜	1/2/154:160	NA	NA
4	HL_6RBD_004 ➜	1/2/190:195	NA	NA
5	HL_6RBD_005 ➜	1/2/230:235	NA	NA
6	HL_6RBD_006 ➜	1/2/243:250	NA	NA
7	HL_6RBD_007 ➜	1/2/276:279	NA	NA
8	HL_6RBD_008 ➜	1/2/330:338	NA	NA
9	HL_6RBD_009 ➜	1/2/368:373	NA	NA
10	HL_6RBD_010 ➜	1/2/393:404	NA	NA
11	HL_6RBD_011 ➜	1/2/414:419	NA	NA
12	HL_6RBD_012 ➜	1/2/450:456	NA	NA
13	HL_6RBD_013 ➜	1/2/491:496	NA	NA
14	HL_6RBD_014 ➜	1/2/520:532	NA	NA
15	HL_6RBD_015 ➜	1/2/552:572	NA	NA
16	HL_6RBD_016 ➜	1/2/716:722	NA	NA
17	HL_6RBD_017 ➜	1/2/764:772	NA	NA
18	HL_6RBD_018 ➜	1/2/777:783	NA	NA
19	HL_6RBD_019 ➜	1/2/829:843	NA	NA
20	HL_6RBD_020 ➜	1/2/899:910	NA	NA
21	HL_6RBD_021 ➜	1/2/937:942	NA	NA
22	HL_6RBD_022 ➜	1/2/997:1007	NA	NA
23	HL_6RBD_023 ➜	1/2/1054:1065	NA	NA
24	HL_6RBD_024 ➜	1/2/1084:1089	NA	NA
25	HL_6RBD_025 ➜	1/2/1121:1126	NA	NA
26	HL_6RBD_027 ➜	1/2/1238:1247	NA	NA
27	HL_6RBD_028 ➜	1/2/1296:1301	NA	NA
28	HL_6RBD_029 ➜	1/2/1309:1316	NA	NA
29	HL_6RBD_030 ➜	1/2/1359:1364	NA	NA
30	HL_6RBD_031 ➜	1/2/1396:1402	NA	NA
31	HL_6RBD_032 ➜	1/2/1501:1506	NA	NA
32	HL_6RBD_033 ➜	1/2/1550:1561	NA	NA
33	HL_6RBD_034 ➜	1/2/1594:1602	NA	NA
34	HL_6RBD_035 ➜	1/2/1698:1703	NA	NA
35	HL_6RBD_036 ➜	1/2/1778:1783	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_6RBD_026 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	IL_6RBD_001 ➜	1/2/24:26,1/2/600:601	NA	NA
2	IL_6RBD_002 ➜	1/2/35:37,1/2/471:473	NA	NA
3	IL_6RBD_003 ➜	1/2/37:41,1/2/466:471	NA	NA
4	IL_6RBD_004 ➜	1/2/42:48,1/2/431:433	NA	NA
5	IL_6RBD_005 ➜	1/2/50:52,1/2/428:429	NA	NA
6	IL_6RBD_006 ➜	1/2/58:63,1/2/87:89	NA	NA
7	IL_6RBD_007 ➜	1/2/64:69,1/2/82:86	NA	NA
8	IL_6RBD_008 ➜	1/2/109:112,1/2/302:305	NA	NA
9	IL_6RBD_009 ➜	1/2/113:116,1/2/300:301	NA	NA
10	IL_6RBD_010 ➜	1/2/117:122,1/2/295:299	NA	NA
11	IL_6RBD_011 ➜	1/2/143:149,1/2/165:172	NA	NA
12	IL_6RBD_012 ➜	1/2/150:152,1/2/162:164	NA	NA
13	IL_6RBD_013 ➜	1/2/186:189,1/2/196:199	NA	NA
14	IL_6RBD_014 ➜	1/2/204:206,1/2/259:263	NA	NA
15	IL_6RBD_015 ➜	1/2/206:208,1/2/257:259	NA	NA
16	IL_6RBD_016 ➜	1/2/265:267,1/2/288:289	NA	NA
17	IL_6RBD_017 ➜	1/2/270:273,1/2/283:285	NA	NA
18	IL_6RBD_018 ➜	1/2/275:276,1/2/279:281	NA	NA
19	IL_6RBD_019 ➜	1/2/311:316,1/2/348:355	NA	NA
20	IL_6RBD_020 ➜	1/2/318:323,1/2/345:346	NA	NA
21	IL_6RBD_021 ➜	1/2/363:365,1/2/376:381	NA	NA
22	IL_6RBD_022 ➜	1/2/389:391,1/2/406:408	NA	NA
23	IL_6RBD_023 ➜	1/2/411:413,1/2/420:422	NA	NA
24	IL_6RBD_024 ➜	1/2/439:441,1/2/463:464	NA	NA
25	IL_6RBD_025 ➜	1/2/443:447,1/2/460:461	NA	NA
26	IL_6RBD_026 ➜	1/2/447:448,1/2/458:460	NA	NA
27	IL_6RBD_027 ➜	1/2/481:482,1/2/505:507	NA	NA
28	IL_6RBD_028 ➜	1/2/514:516,1/2/536:543	NA	NA
29	IL_6RBD_029 ➜	1/2/517:518,1/2/533:535	NA	NA
30	IL_6RBD_030 ➜	1/2/518:520,1/2/532:533	NA	NA
31	IL_6RBD_031 ➜	1/2/550:551,1/2/573:588	NA	NA
32	IL_6RBD_032 ➜	1/2/616:622,1/2/1104:1105	NA	NA
33	IL_6RBD_033 ➜	1/2/624:626,1/2/973:975	NA	NA
34	IL_6RBD_034 ➜	1/2/627:631,1/2/968:972	NA	NA
35	IL_6RBD_035 ➜	1/2/646:648,1/2/686:688	NA	NA
36	IL_6RBD_036 ➜	1/2/652:658,1/2/676:682	NA	NA
37	IL_6RBD_037 ➜	1/2/703:705,1/2/733:735	NA	NA
38	IL_6RBD_038 ➜	1/2/705:708,1/2/730:733	NA	NA
39	IL_6RBD_039 ➜	1/2/709:712,1/2/726:729	NA	NA
40	IL_6RBD_040 ➜	1/2/746:747,1/2/802:805	NA	NA
41	IL_6RBD_041 ➜	1/2/748:750,1/2/799:801	NA	NA
42	IL_6RBD_042 ➜	1/2/751:759,1/2/791:798	NA	NA
43	IL_6RBD_043 ➜	1/2/819:822,1/2/850:852	NA	NA
44	IL_6RBD_044 ➜	1/2/822:824,1/2/848:850	NA	NA
45	IL_6RBD_045 ➜	1/2/865:866,1/2/962:965	NA	NA
46	IL_6RBD_046 ➜	1/2/867:870,1/2/957:961	NA	NA
47	IL_6RBD_047 ➜	1/2/871:874,1/2/953:956	NA	NA
48	IL_6RBD_048 ➜	1/2/874:878,1/2/950:953	NA	NA
49	IL_6RBD_049 ➜	1/2/885:888,1/2/924:927	NA	NA
50	IL_6RBD_050 ➜	1/2/893:899,1/2/910:919	NA	NA
51	IL_6RBD_051 ➜	1/2/985:990,1/2/1014:1016	NA	NA
52	IL_6RBD_052 ➜	1/2/990:994,1/2/1010:1014	NA	NA
53	IL_6RBD_053 ➜	1/2/1034:1036,1/2/1095:1101	NA	NA
54	IL_6RBD_054 ➜	1/2/1041:1044,1/2/1074:1077	NA	NA
55	IL_6RBD_055 ➜	1/2/1051:1053,1/2/1066:1067	NA	NA
56	IL_6RBD_056 ➜	1/2/1111:1118,1/2/1129:1134	NA	NA
57	IL_6RBD_057 ➜	1/2/1157:1160,1/2/1617:1621	NA	NA
58	IL_6RBD_058 ➜	1/2/1173:1175,1/2/1464:1466	NA	NA
59	IL_6RBD_059 ➜	1/2/1178:1179,1/2/1459:1461	NA	NA
60	IL_6RBD_060 ➜	1/2/1213:1215,1/2/1448:1450	NA	NA
61	IL_6RBD_061 ➜	1/2/1224:1233,1/2/1252:1259	NA	NA
62	IL_6RBD_062 ➜	1/2/1234:1236,1/2/1249:1251	NA	NA
63	IL_6RBD_063 ➜	1/2/1268:1270,1/2/1440:1442	NA	NA
64	IL_6RBD_064 ➜	1/2/1273:1274,1/2/1435:1437	NA	NA
65	IL_6RBD_065 ➜	1/2/1276:1277,1/2/1431:1433	NA	NA
66	IL_6RBD_066 ➜	1/2/1290:1292,1/2/1323:1325	NA	NA
67	IL_6RBD_067 ➜	1/2/1306:1308,1/2/1317:1318	NA	NA
68	IL_6RBD_068 ➜	1/2/1339:1342,1/2/1383:1385	NA	NA
69	IL_6RBD_069 ➜	1/2/1345:1348,1/2/1377:1380	NA	NA
70	IL_6RBD_070 ➜	1/2/1352:1354,1/2/1369:1373	NA	NA
71	IL_6RBD_071 ➜	1/2/1389:1391,1/2/1407:1412	NA	NA
72	IL_6RBD_072 ➜	1/2/1480:1487,1/2/1519:1527	NA	NA
73	IL_6RBD_073 ➜	1/2/1488:1494,1/2/1513:1518	NA	NA
74	IL_6RBD_074 ➜	1/2/1495:1498,1/2/1509:1512	NA	NA
75	IL_6RBD_075 ➜	1/2/1540:1545,1/2/1566:1571	NA	NA
76	IL_6RBD_076 ➜	1/2/1637:1642,1/2/1759:1767	NA	NA
77	IL_6RBD_077 ➜	1/2/1642:1644,1/2/1757:1759	NA	NA
78	IL_6RBD_078 ➜	1/2/1644:1647,1/2/1753:1757	NA	NA
79	IL_6RBD_079 ➜	1/2/1650:1652,1/2/1748:1750	NA	NA
80	IL_6RBD_080 ➜	1/2/1653:1657,1/2/1744:1747	NA	NA
81	IL_6RBD_081 ➜	1/2/1665:1667,1/2/1734:1736	NA	NA
82	IL_6RBD_082 ➜	1/2/1669:1672,1/2/1729:1732	NA	NA
83	IL_6RBD_083 ➜	1/2/1672:1674,1/2/1727:1729	NA	NA
84	IL_6RBD_084 ➜	1/2/1675:1678,1/2/1723:1726	NA	NA
85	IL_6RBD_085 ➜	1/2/1678:1682,1/2/1719:1723	NA	NA
86	IL_6RBD_086 ➜	1/2/1688:1690,1/2/1711:1713	NA	NA
87	IL_6RBD_087 ➜	1/2/1693:1695,1/2/1706:1708	NA	NA

Problematic loops

No problematic loops

Valid loops

#	loop id	location	annotation	motif
1	J3_6RBD_001 ➜	1/2/41:42,1/2/433:439,1/2/464:466	NA	NA
2	J3_6RBD_002 ➜	1/2/633:635,1/2/861:865,1/2/965:966	NA	NA
3	J3_6RBD_003 ➜	1/2/760:763,1/2/773:775,1/2/785:790	NA	NA
4	J3_6RBD_004 ➜	1/2/881:884,1/2/928:936,1/2/943:947	NA	NA
5	J3_6RBD_005 ➜	1/2/1037:1039,1/2/1079:1083,1/2/1090:1094	NA	NA
6	J3_6RBD_006 ➜	1/2/1161:1164,1/2/1581:1587,1/2/1609:1616	NA	NA
7	J3_6RBD_007 ➜	1/2/1168:1171,1/2/1468:1470,1/2/1574:1577	NA	NA
8	J3_6RBD_008 ➜	1/2/1180:1187,1/2/1198:1209,1/2/1454:1458	NA	NA
9	J3_6RBD_009 ➜	1/2/1215:1220,1/2/1263:1268,1/2/1442:1448	NA	NA
10	J3_6RBD_010 ➜	1/2/1292:1296,1/2/1301:1306,1/2/1318:1323	NA	NA
11	J3_6RBD_011 ➜	1/2/1335:1339,1/2/1385:1389,1/2/1412:1416	NA	NA
12	J3_6RBD_012 ➜	1/2/1470:1474,1/2/1533:1540,1/2/1571:1574	NA	NA

Problematic loops

No problematic loops

Coloring options: Nucleotide numbers

6RBD Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops