Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6S47_0011/AA/38:45No text annotation
Not in a motif group
homologous
HL_5TBW_001
HL_06192.2
HL_6S47_0021/AA/69:74No text annotation
Not in a motif group
homologous
HL_8C3A_002
HL_02862.2
HL_6S47_0031/AA/90:96No text annotation
Not in a motif group
homologous
HL_8C3A_003
HL_67216.7
HL_6S47_0041/AA/132:136No text annotation
Not in a motif group
homologous
HL_5TBW_004
HL_98426.1
HL_6S47_0051/AA/194:201No text annotation
Not in a motif group
homologous
HL_8C3A_005
HL_89380.2
HL_6S47_0061/AA/208:212No text annotation
Not in a motif group
homologous
HL_5TBW_006
HL_98984.2
HL_6S47_0071/AA/216:224No text annotation
Not in a motif group
homologous
HL_8C3A_007
HL_08002.9
HL_6S47_0081/AA/278:287No text annotation
Not in a motif group
homologous
HL_8C3A_008
HL_71554.2
HL_6S47_0091/AA/303:312No text annotation
Not in a motif group
homologous
HL_8C3A_009
HL_12078.2
HL_6S47_0101/AA/357:362No text annotation
Not in a motif group
homologous
HL_8C3A_010
HL_42097.2
HL_6S47_0111/AA/382:387No text annotation
Not in a motif group
homologous
HL_8C3A_011
HL_42097.2
HL_6S47_0121/AA/543:548No text annotation
Not in a motif group
homologous
HL_5TBW_012
HL_86373.2
HL_6S47_0131/AA/599:604GNRA
Not in a motif group
homologous
HL_5TBW_013
HL_42097.2
HL_6S47_0141/AA/640:649No text annotation
Not in a motif group
homologous
HL_8C3A_014
HL_89380.2
HL_6S47_0151/AA/686:694No text annotation
Not in a motif group
homologous
HL_8C3A_015
HL_03345.1
HL_6S47_0161/AA/707:712No text annotation
Not in a motif group
homologous
HL_8C3A_016
HL_42097.2
HL_6S47_0171/AA/732:737GNRA
Not in a motif group
homologous
HL_5TBW_017
HL_42097.2
HL_6S47_0181/AA/763:768No text annotation
Not in a motif group
homologous
HL_5TBW_018
HL_34168.2
HL_6S47_0191/AA/844:849No text annotation
Not in a motif group
homologous
HL_8C3A_019
HL_42097.2
HL_6S47_0201/AA/876:885No text annotation
Not in a motif group
homologous
HL_5TBW_020
HL_39334.6
HL_6S47_0211/AA/910:918No text annotation
Not in a motif group
homologous
HL_5TBW_021
HL_33817.1
HL_6S47_0221/AA/958:963No text annotation
Not in a motif group
homologous
HL_8C3A_022
HL_96598.1
HL_6S47_0231/AA/1023:1029GNRA
Not in a motif group
homologous
HL_5TBW_023
HL_42097.2
HL_6S47_0241/AA/1076:1083No text annotation
Not in a motif group
geometric
HL_5TBW_024
HL_71554.2
HL_6S47_0251/AA/1126:1132No text annotation
Not in a motif group
homologous
HL_8C3A_025
HL_42097.2
HL_6S47_0261/AA/1148:1155No text annotation
Not in a motif group
homologous
HL_8C3A_026
HL_64430.2
HL_6S47_0271/AA/1239:1249No text annotation
Not in a motif group
HL_6S47_0281/AA/1267:1274No text annotation
Not in a motif group
homologous
HL_8C3A_028
HL_84085.2
HL_6S47_0291/AA/1347:1357No text annotation
Not in a motif group
homologous
HL_5TBW_029
HL_89098.1
HL_6S47_0301/AA/1403:1408No text annotation
Not in a motif group
homologous
HL_8C3A_030
HL_42097.2
HL_6S47_0311/AA/1462:1470No text annotation
Not in a motif group
homologous
HL_8C3A_031
HL_89380.2
HL_6S47_0321/AA/1506:1512No text annotation
Not in a motif group
homologous
HL_8C3A_032
HL_46680.1
HL_6S47_0331/AA/1544:1549No text annotation
Not in a motif group
homologous
HL_8C3A_033
HL_76539.2
HL_6S47_0341/AA/1566:1572No text annotation
Not in a motif group
geometric
HL_4KR9_003
HL_08127.1
HL_6S47_0351/AA/1599:1608No text annotation
Not in a motif group
homologous
HL_5TBW_035
HL_69023.2
HL_6S47_0361/AA/1634:1639No text annotation
Not in a motif group
homologous
HL_8C3A_036
HL_42097.2
HL_6S47_0371/AA/1680:1688No text annotation
Not in a motif group
homologous
HL_8C3A_037
HL_60812.1
HL_6S47_0381/AA/1719:1725No text annotation
Not in a motif group
homologous
HL_5TBW_038
HL_86373.2
HL_6S47_0391/AA/1760:1765Other HL
Not in a motif group
homologous
HL_5TBW_039
HL_91104.1
HL_6S47_0401/AA/1792:1796No text annotation
Not in a motif group
homologous
HL_5TBW_040
HL_38927.2
HL_6S47_0411/AA/1844:1851No text annotation
Not in a motif group
homologous
HL_8C3A_041
HL_64430.2
HL_6S47_0421/AA/1862:1868GNRA with one bulged base
Not in a motif group
homologous
HL_5TBW_042
HL_42097.2
HL_6S47_0431/AA/1923:1928No text annotation
Not in a motif group
homologous
HL_8C3A_043
HL_03562.2
HL_6S47_0441/AA/1953:2094No text annotation
Not in a motif group
homologous
HL_5TBW_044
HL_09829.1
HL_6S47_0451/AA/2110:2114No text annotation
Not in a motif group
homologous
HL_8C3A_045
HL_28980.1
HL_6S47_0461/AA/2135:2145No text annotation
Not in a motif group
homologous
HL_5TBW_046
HL_43613.5
HL_6S47_0471/AA/2164:2170No text annotation
Not in a motif group
homologous
HL_8C3A_047
HL_42097.2
HL_6S47_0481/AA/2220:2225Other HL
Not in a motif group
homologous
HL_5TBW_048
HL_42097.2
HL_6S47_0491/AA/2253:2263No text annotation
Not in a motif group
homologous
HL_8C3A_049
HL_71924.2
HL_6S47_0501/AA/2292:2300No text annotation
Not in a motif group
homologous
HL_8C3A_050
HL_51824.1
HL_6S47_0511/AA/2369:2378No text annotation
Not in a motif group
homologous
HL_8C3A_051
HL_90642.6
HL_6S47_0521/AA/2441:2506No text annotation
Not in a motif group
homologous
HL_5TBW_052
HL_66226.1
HL_6S47_0531/AA/2534:2545No text annotation
Not in a motif group
HL_6S47_0541/AA/2568:2573No text annotation
Not in a motif group
homologous
HL_5TBW_053
HL_30239.1
HL_6S47_0551/AA/2616:2624No text annotation
Not in a motif group
homologous
HL_8C3A_055
HL_53171.2
HL_6S47_0561/AA/2633:2645No text annotation
Not in a motif group
homologous
HL_5TBW_055
HL_19870.6
HL_6S47_0571/AA/2673:2681No text annotation
Not in a motif group
homologous
HL_8C3A_057
HL_76406.4
HL_6S47_0581/AA/2693:2700No text annotation
Not in a motif group
homologous
HL_8C3A_058
HL_12078.2
HL_6S47_0591/AA/2724:2732No text annotation
Not in a motif group
homologous
HL_8C3A_059
HL_92229.2
HL_6S47_0601/AA/2744:2749No text annotation
Not in a motif group
homologous
HL_8C3A_060
HL_42097.2
HL_6S47_0611/AA/2776:2784No text annotation
Not in a motif group
homologous
HL_8C3A_061
HL_96598.1
HL_6S47_0621/AA/2840:2848No text annotation
Not in a motif group
homologous
HL_5TBW_061
HL_06192.2
HL_6S47_0631/AA/2897:2904No text annotation
Not in a motif group
homologous
HL_5TBW_062
HL_91104.1
HL_6S47_0641/AA/2920:2926No text annotation
Not in a motif group
homologous
HL_5TBW_063
HL_43656.2
HL_6S47_0651/AA/2963:2968No text annotation
Not in a motif group
homologous
HL_8C3A_065
HL_42097.2
HL_6S47_0661/AA/3025:3030No text annotation
Not in a motif group
homologous
HL_8C3A_066
HL_42097.2
HL_6S47_0671/AA/3068:3073No text annotation
Not in a motif group
homologous
HL_8C3A_067
HL_46680.1
HL_6S47_0681/AA/3110:3124No text annotation
Not in a motif group
homologous
HL_8C3A_068
HL_56677.7
HL_6S47_0691/AA/3194:3197No text annotation
Not in a motif group
geometric
HL_5TBW_068
HL_98426.1
HL_6S47_0701/AA/3240:3247No text annotation
Not in a motif group
homologous
HL_5TBW_069
HL_14449.2
HL_6S47_0711/AA/3303:3311No text annotation
Not in a motif group
homologous
HL_8C3A_071
HL_27930.1
HL_6S47_0721/AA/3350:3353No text annotation
Not in a motif group
homologous
HL_8C3A_072
HL_53837.1
HL_6S47_0731/AB/36:41No text annotation
Not in a motif group
geometric
HL_5TBW_185
HL_87939.1
HL_6S47_0741/AB/88:93GNRA
Not in a motif group
homologous
HL_5TBW_186
HL_42097.2
HL_6S47_0751/AC/69:89No text annotation
Not in a motif group
HL_6S47_0761/AC/108:114No text annotation
Not in a motif group
homologous
HL_5TBW_075
HL_87939.1
HL_6S47_0771/AC/124:129No text annotation
Not in a motif group
homologous
HL_5TBW_076
HL_96851.2
HL_6S47_0781/BA/7:17No text annotation
Not in a motif group
homologous
HL_4V88_186
HL_89881.2
HL_6S47_0791/BA/70:81No text annotation
Not in a motif group
homologous
HL_4V88_187
HL_40069.1
HL_6S47_0801/BA/154:160Other HL
Not in a motif group
homologous
HL_4V88_188
HL_76539.2
HL_6S47_0811/BA/190:195No text annotation
Not in a motif group
geometric
HL_5TBW_044
HL_09829.1
HL_6S47_0821/BA/231:235No text annotation
Not in a motif group
HL_6S47_0831/BA/243:250T-loop with 1 bulged base
Not in a motif group
homologous
HL_4V88_191
HL_27930.1
HL_6S47_0841/BA/276:279No text annotation
Not in a motif group
geometric
HL_4WF9_037
HL_94803.2
HL_6S47_0851/BA/330:338No text annotation
Not in a motif group
homologous
HL_4V88_193
HL_69023.2
HL_6S47_0861/BA/368:373No text annotation
Not in a motif group
homologous
HL_4V88_194
HL_50142.2
HL_6S47_0871/BA/393:404No text annotation
Not in a motif group
homologous
HL_4V88_195
HL_84288.1
HL_6S47_0881/BA/414:419UNCG
Not in a motif group
homologous
HL_4V88_196
HL_03562.2
HL_6S47_0891/BA/450:456No text annotation
Not in a motif group
homologous
HL_4V88_197
HL_09136.1
HL_6S47_0901/BA/491:496No text annotation
Not in a motif group
homologous
HL_4V88_198
HL_91104.1
HL_6S47_0911/BA/520:532No text annotation
Not in a motif group
homologous
HL_4V88_199
HL_06285.2
HL_6S47_0921/BA/569:574Other HL
Not in a motif group
homologous
HL_4V88_200
HL_53845.1
HL_6S47_0931/BA/764:772No text annotation
Not in a motif group
homologous
HL_4V88_203
HL_46766.2
HL_6S47_0941/BA/777:783No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_76539.2
HL_6S47_0951/BA/829:843No text annotation
Not in a motif group
homologous
HL_4V88_205
HL_96598.1
HL_6S47_0961/BA/900:909No text annotation
Not in a motif group
homologous
HL_4V88_206
HL_12326.1
HL_6S47_0971/BA/937:942Other HL
Not in a motif group
homologous
HL_4V88_207
HL_87030.2
HL_6S47_0981/BA/997:1007No text annotation
Not in a motif group
homologous
HL_4V88_208
HL_12326.1
HL_6S47_0991/BA/1055:1064No text annotation
Not in a motif group
HL_6S47_1001/BA/1084:1089Other HL
Not in a motif group
homologous
HL_4V88_210
HL_42097.2
HL_6S47_1011/BA/1121:1126GNRA
Not in a motif group
homologous
HL_4V88_211
HL_42097.2
HL_6S47_1021/BA/1188:1197No text annotation
Not in a motif group
homologous
HL_4V88_212
HL_73530.2
HL_6S47_1031/BA/1238:1247No text annotation
Not in a motif group
homologous
HL_4V88_213
HL_53597.2
HL_6S47_1041/BA/1295:1302No text annotation
Not in a motif group
geometric
HL_7A0S_056
HL_84085.2
HL_6S47_1051/BA/1309:1316No text annotation
Not in a motif group
homologous
HL_4V88_215
HL_71554.2
HL_6S47_1061/BA/1359:1364No text annotation
Not in a motif group
homologous
HL_4V88_216
HL_10278.1
HL_6S47_1071/BA/1396:1402No text annotation
Not in a motif group
homologous
HL_4V88_217
HL_42097.2
HL_6S47_1081/BA/1501:1506GNRA
Not in a motif group
homologous
HL_4V88_218
HL_42097.2
HL_6S47_1091/BA/1550:1561No text annotation
Not in a motif group
homologous
HL_4V88_219
HL_22554.1
HL_6S47_1101/BA/1594:1602No text annotation
Not in a motif group
homologous
HL_4V88_220
HL_60812.1
HL_6S47_1111/BA/1684:1717No text annotation
Not in a motif group
HL_6S47_1121/BA/1778:1783Other HL
Not in a motif group
homologous
HL_4V88_222
HL_16173.1

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6S47_0011/AA/3:4,
1/AC/155:156
No text annotation
Not in a motif group
IL_6S47_0021/AA/7:8,
1/AC/150:152
Single bulged C
Not in a motif group
homologous
IL_5TBW_002
IL_61258.12
IL_6S47_0031/AA/13:15,
1/AC/144:145
No text annotation
Not in a motif group
homologous
IL_8C3A_003
IL_83039.14
IL_6S47_0041/AA/27:28,
1/AA/56:58
No text annotation
Not in a motif group
homologous
IL_8C3A_004
IL_76488.2
IL_6S47_0051/AA/31:38,
1/AA/45:53
tSH-tHW-tHH-tHS
Not in a motif group
geometric
IL_5TBW_005
IL_35728.2
IL_6S47_0061/AA/82:89,
1/AA/97:103
No text annotation
Not in a motif group
homologous
IL_8C3A_006
IL_88613.1
IL_6S47_0071/AA/123:124,
1/AA/144:149
No text annotation
Not in a motif group
geometric
IL_5TBW_007
IL_19724.2
IL_6S47_0081/AA/125:127,
1/AA/141:143
No text annotation
Not in a motif group
homologous
IL_8C3A_008
IL_95997.1
IL_6S47_0091/AA/163:165,
1/AA/257:258
Single stack bend
Not in a motif group
homologous
IL_5TBW_009
IL_76488.2
IL_6S47_0101/AA/169:170,
1/AA/248:253
No text annotation
Not in a motif group
homologous
IL_5TBW_010
IL_74684.1
IL_6S47_0111/AA/176:178,
1/AA/238:242
8-nt loop receptor
Not in a motif group
geometric
IL_5U3G_002
IL_93341.1
IL_6S47_0121/AA/189:191,
1/AA/204:205
No text annotation
Not in a motif group
homologous
IL_8C3A_013
IL_83039.14
IL_6S47_0131/AA/337:339,
1/AC/25:26
Single bulged A
Not in a motif group
homologous
IL_5TBW_013
IL_37497.3
IL_6S47_0141/AA/376:379,
1/AA/390:403
No text annotation
Not in a motif group
geometric
IL_5TBW_014
IL_60992.6
IL_6S47_0151/AA/404:410,
1/AC/13:19
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_5TBW_015
IL_66414.6
IL_6S47_0161/AA/429:431,
1/AA/628:630
No text annotation
Not in a motif group
homologous
IL_5TBW_016
IL_51629.2
IL_6S47_0171/AA/435:495,
1/AA/618:624
No text annotation
Not in a motif group
homologous
IL_5TBW_017
IL_33557.1
IL_6S47_0181/AA/512:513,
1/AA/577:579
Single bulged A
Not in a motif group
homologous
IL_5TBW_018
IL_37497.3
IL_6S47_0191/AA/517:525,
1/AA/567:573
No text annotation
Not in a motif group
homologous
IL_5TBW_019
IL_23992.1
IL_6S47_0201/AA/531:538,
1/AA/553:561
No text annotation
Not in a motif group
homologous
IL_5TBW_020
IL_07703.1
IL_6S47_0211/AA/668:670,
1/AA/792:794
No text annotation
Not in a motif group
homologous
IL_5TBW_021
IL_95997.1
IL_6S47_0221/AA/680:684,
1/AA/696:700
No text annotation
Not in a motif group
homologous
IL_5TBW_022
IL_74284.1
IL_6S47_0231/AA/725:728,
1/AA/741:745
No text annotation
Not in a motif group
homologous
IL_8C3A_025
IL_07235.1
IL_6S47_0241/AA/752:753,
1/AA/779:781
No text annotation
Not in a motif group
homologous
IL_8C3A_026
IL_37497.3
IL_6S47_0251/AA/755:756,
1/AA/775:777
Single bulged U
Not in a motif group
homologous
IL_5TBW_025
IL_83039.14
IL_6S47_0261/AA/758:763,
1/AA/768:773
No text annotation
Not in a motif group
geometric
IL_5TBW_026
IL_19954.2
IL_6S47_0271/AA/803:805,
1/AA/938:940
No text annotation
Not in a motif group
homologous
IL_8C3A_029
IL_95997.1
IL_6S47_0281/AA/805:809,
1/AA/931:938
No text annotation
Not in a motif group
geometric
IL_5TBW_028
IL_17470.6
IL_6S47_0291/AA/833:834,
1/AA/859:861
Single bulged G
Not in a motif group
geometric
IL_5TBW_029
IL_00225.3
IL_6S47_0301/AA/834:838,
1/AA/855:859
No text annotation
Not in a motif group
homologous
IL_8C3A_033
IL_56467.8
IL_6S47_0311/AA/869:872,
1/AA/888:890
No text annotation
Not in a motif group
homologous
IL_8C3A_034
IL_05564.2
IL_6S47_0321/AA/873:875,
1/AA/886:887
No text annotation
Not in a motif group
homologous
IL_8C3A_035
IL_83039.14
IL_6S47_0331/AA/907:909,
1/AA/919:923
Multiple bulged bases
Not in a motif group
homologous
IL_5TBW_033
IL_90991.6
IL_6S47_0341/AA/954:956,
1/AA/965:967
No text annotation
Not in a motif group
homologous
IL_5TBW_034
IL_95997.1
IL_6S47_0351/AA/969:970,
1/AA/1111:1113
No text annotation
Not in a motif group
homologous
IL_8C3A_038
IL_76488.2
IL_6S47_0361/AA/977:982,
1/AA/1101:1104
No text annotation
Not in a motif group
homologous
IL_8C3A_039
IL_59027.1
IL_6S47_0371/AA/983:985,
1/AA/1099:1100
No text annotation
Not in a motif group
homologous
IL_8C3A_040
IL_00225.3
IL_6S47_0381/AA/991:997,
1/AA/1052:1058
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
homologous
IL_5TBW_038
IL_93830.3
IL_6S47_0391/AA/997:998,
1/AA/1050:1052
Minor groove platform
Not in a motif group
geometric
IL_5TBW_039
IL_42622.2
IL_6S47_0401/AA/999:1004,
1/AA/1046:1049
C-loop
Not in a motif group
homologous
IL_5TBW_040
IL_02509.1
IL_6S47_0411/AA/1006:1009,
1/AA/1041:1044
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5TBW_041
IL_30621.3
IL_6S47_0421/AA/1009:1011,
1/AA/1039:1041
No text annotation
Not in a motif group
geometric
IL_5TBW_042
IL_95997.1
IL_6S47_0431/AA/1013:1018,
1/AA/1034:1037
Other IL
Not in a motif group
homologous
IL_5TBW_043
IL_71110.1
IL_6S47_0441/AA/1069:1071,
1/AA/1087:1089
No text annotation
Not in a motif group
homologous
IL_8C3A_047
IL_95997.1
IL_6S47_0451/AA/1074:1076,
1/AA/1083:1084
No text annotation
Not in a motif group
homologous
IL_8C3A_048
IL_00225.3
IL_6S47_0461/AA/1120:1122,
1/AA/1136:1138
No text annotation
Not in a motif group
homologous
IL_5TBW_046
IL_95997.1
IL_6S47_0471/AA/1167:1171,
1/AA/1328:1332
No text annotation
Not in a motif group
homologous
IL_8C3A_051
IL_89002.2
IL_6S47_0481/AA/1173:1180,
1/AA/1325:1326
No text annotation
Not in a motif group
homologous
IL_8C3A_052
IL_15861.7
IL_6S47_0491/AA/1180:1182,
1/AA/1324:1325
Single bulged U
Not in a motif group
homologous
IL_5TBW_050
IL_83039.14
IL_6S47_0501/AA/1187:1194,
1/AA/1314:1319
No text annotation
Not in a motif group
geometric
IL_5TBW_051
IL_27086.1
IL_6S47_0511/AA/1194:1205,
1/AA/1299:1314
No text annotation
Not in a motif group
geometric
IL_5TBW_052
IL_53762.1
IL_6S47_0521/AA/1207:1209,
1/AA/1296:1297
Single bulged U
Not in a motif group
homologous
IL_5TBW_053
IL_83039.14
IL_6S47_0531/AA/1218:1226,
1/AA/1283:1287
Kink-turn
Not in a motif group
homologous
IL_5TBW_054
IL_90538.4
IL_6S47_0541/AA/1232:1238,
1/AA/1250:1256
No text annotation
Not in a motif group
IL_6S47_0551/AA/1376:1378,
1/AA/1428:1431
No text annotation
Not in a motif group
homologous
IL_8C3A_061
IL_52767.2
IL_6S47_0561/AA/1385:1387,
1/AA/1420:1421
No text annotation
Not in a motif group
homologous
IL_8C3A_062
IL_37497.3
IL_6S47_0571/AA/1388:1395,
1/AA/1415:1419
Kink-turn
Not in a motif group
homologous
IL_5TBW_059
IL_70923.2
IL_6S47_0581/AA/1398:1400,
1/AA/1411:1412
Single bulged A
Not in a motif group
homologous
IL_5TBW_060
IL_37497.3
IL_6S47_0591/AA/1444:1450,
1/AA/2354:2359
No text annotation
Not in a motif group
homologous
IL_8C3A_065
IL_76042.2
IL_6S47_0601/AA/1500:1505,
1/AA/1513:1516
No text annotation
Not in a motif group
homologous
IL_8C3A_066
IL_93630.2
IL_6S47_0611/AA/1532:1536,
1/AA/1585:1590
No text annotation
Not in a motif group
homologous
IL_8C3A_067
IL_89002.2
IL_6S47_0621/AA/1561:1566,
1/AA/1572:1579
No text annotation
Not in a motif group
IL_6S47_0631/AA/1618:1621,
1/AA/1824:1826
No text annotation
Not in a motif group
homologous
IL_8C3A_070
IL_84698.1
IL_6S47_0641/AA/1623:1625,
1/AA/1818:1822
Major groove platform with extra pair
Not in a motif group
geometric
IL_4OQU_001
IL_47263.2
IL_6S47_0651/AA/1627:1631,
1/AA/1811:1816
No text annotation
Not in a motif group
geometric
IL_5TBW_066
IL_48431.1
IL_6S47_0661/AA/1645:1649,
1/AA/1806:1810
Triple sheared
Not in a motif group
geometric
IL_5TBW_067
IL_56467.8
IL_6S47_0671/AA/1661:1663,
1/AA/1786:1788
No text annotation
Not in a motif group
homologous
IL_8C3A_074
IL_95997.1
IL_6S47_0681/AA/1669:1670,
1/AA/1778:1780
Single bulged C
Not in a motif group
geometric
IL_5TBW_069
IL_61258.12
IL_6S47_0691/AA/1670:1671,
1/AA/1776:1778
No text annotation
Not in a motif group
homologous
IL_8C3A_076
IL_76488.2
IL_6S47_0701/AA/1694:1698,
1/AA/1747:1752
No text annotation
Not in a motif group
homologous
IL_8C3A_077
IL_69313.1
IL_6S47_0711/AA/1702:1707,
1/AA/1737:1743
No text annotation
Not in a motif group
homologous
IL_5TBW_072
IL_39753.1
IL_6S47_0721/AA/1711:1717,
1/AA/1727:1733
Kink-turn
Not in a motif group
homologous
IL_5TBW_073
IL_60192.2
IL_6S47_0731/AA/1883:1889,
1/AA/2346:2349
No text annotation
Not in a motif group
homologous
IL_8C3A_080
IL_49460.2
IL_6S47_0741/AA/1895:1897,
1/AA/2338:2340
No text annotation
Not in a motif group
homologous
IL_8C3A_081
IL_54997.7
IL_6S47_0751/AA/1898:1901,
1/AA/2336:2337
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_5TBW_076
IL_50694.2
IL_6S47_0761/AA/1901:1906,
1/AA/2333:2336
No text annotation
Not in a motif group
homologous
IL_8C3A_083
IL_82842.2
IL_6S47_0771/AA/1918:1923,
1/AA/1928:1934
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_4V9F_063
IL_65969.2
IL_6S47_0781/AA/1940:1942,
1/AA/2106:2108
No text annotation
Not in a motif group
homologous
IL_8C3A_085
IL_95997.1
IL_6S47_0791/AA/1947:1948,
1/AA/2098:2101
No text annotation
Not in a motif group
homologous
IL_5TBW_080
IL_74125.1
IL_6S47_0801/AA/1951:1953,
1/AA/2094:2095
Single stack bend
Not in a motif group
homologous
IL_5TBW_081
IL_76488.2
IL_6S47_0811/AA/2128:2129,
1/AA/2323:2325
No text annotation
Not in a motif group
homologous
IL_8C3A_087
IL_37497.3
IL_6S47_0821/AA/2156:2161,
1/AA/2173:2180
Kink-turn related
Not in a motif group
homologous
IL_5TBW_083
IL_64509.1
IL_6S47_0831/AA/2196:2199,
1/AA/2245:2246
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5TBW_084
IL_88739.1
IL_6S47_0841/AA/2200:2201,
1/AA/2241:2244
No text annotation
Not in a motif group
homologous
IL_8C3A_090
IL_16396.2
IL_6S47_0851/AA/2204:2206,
1/AA/2237:2238
Single bulged U
Not in a motif group
geometric
IL_5TBW_086
IL_83039.14
IL_6S47_0861/AA/2206:2210,
1/AA/2235:2237
Major groove platform with extra pair
Not in a motif group
homologous
IL_5TBW_087
IL_63450.2
IL_6S47_0871/AA/2211:2217,
1/AA/2228:2234
No text annotation
Not in a motif group
homologous
IL_8C3A_093
IL_36973.6
IL_6S47_0881/AA/2276:2277,
1/AA/2307:2310
Multiple bulged bases
Not in a motif group
geometric
IL_5TBW_089
IL_59677.2
IL_6S47_0891/AA/2277:2288,
1/AA/2304:2307
No text annotation
Not in a motif group
homologous
IL_5TBW_090
IL_81589.2
IL_6S47_0901/AA/2391:2394,
1/AA/2986:2988
No text annotation
Not in a motif group
homologous
IL_8C3A_096
IL_63450.2
IL_6S47_0911/AA/2396:2398,
1/AA/2981:2984
Minor groove platform with intercalation
Not in a motif group
homologous
IL_5TBW_092
IL_54678.5
IL_6S47_0921/AA/2409:2411,
1/AA/2811:2812
No text annotation
Not in a motif group
homologous
IL_8C3A_098
IL_83039.14
IL_6S47_0931/AA/2412:2413,
1/AA/2807:2810
Minor groove platform
Not in a motif group
homologous
IL_5TBW_094
IL_42622.2
IL_6S47_0941/AA/2423:2425,
1/AA/2604:2607
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_5TBW_095
IL_38958.7
IL_6S47_0951/AA/2520:2526,
1/AA/2584:2587
No text annotation
Not in a motif group
homologous
IL_5TBW_096
IL_74114.1
IL_6S47_0961/AA/2614:2615,
1/AA/2625:2627
Single bulged A
Not in a motif group
homologous
IL_5TBW_098
IL_37497.3
IL_6S47_0971/AA/2666:2668,
1/AA/2686:2690
Isolated tHS basepair with bulges
Not in a motif group
geometric
IL_5TBW_099
IL_38958.7
IL_6S47_0981/AA/2718:2721,
1/AA/2735:2738
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5TBW_100
IL_30621.3
IL_6S47_0991/AA/2770:2773,
1/AA/2787:2788
No text annotation
Not in a motif group
homologous
IL_8C3A_110
IL_76488.2
IL_6S47_1001/AA/2823:2824,
1/AA/2865:2867
Major groove platform
Not in a motif group
homologous
IL_5TBW_102
IL_27635.2
IL_6S47_1011/AA/2824:2826,
1/AA/2863:2865
No text annotation
Not in a motif group
geometric
IL_5TBW_103
IL_95997.1
IL_6S47_1021/AA/2826:2828,
1/AA/2862:2863
Major groove platform
Not in a motif group
geometric
IL_5TBW_104
IL_76223.2
IL_6S47_1031/AA/2828:2830,
1/AA/2858:2862
No text annotation
Not in a motif group
geometric
IL_5TBW_105
IL_92788.2
IL_6S47_1041/AA/2835:2839,
1/AA/2849:2853
No text annotation
Not in a motif group
homologous
IL_8C3A_114
NA
IL_6S47_1051/AA/2876:2877,
1/AA/2949:2951
No text annotation
Not in a motif group
homologous
IL_8C3A_115
IL_76223.2
IL_6S47_1061/AA/2879:2881,
1/AA/2943:2947
No text annotation
Not in a motif group
homologous
IL_8C3A_116
IL_90933.2
IL_6S47_1071/AA/2881:2882,
1/AA/2940:2943
Multiple bulged bases
Not in a motif group
geometric
IL_5TBW_109
IL_71530.2
IL_6S47_1081/AA/2889:2891,
1/AA/2912:2914
No text annotation
Not in a motif group
geometric
IL_5TBW_110
IL_51629.2
IL_6S47_1091/AA/2891:2892,
1/AA/2909:2912
Minor groove platform with intercalation
Not in a motif group
geometric
IL_5TBW_111
IL_95601.3
IL_6S47_1101/AA/2918:2920,
1/AA/2926:2928
No text annotation
Not in a motif group
geometric
IL_5TBW_112
IL_95997.1
IL_6S47_1111/AA/2960:2961,
1/AA/2970:2972
Single bulged A
Not in a motif group
homologous
IL_5TBW_113
IL_37497.3
IL_6S47_1121/AA/3004:3007,
1/AA/3139:3144
No text annotation
Not in a motif group
homologous
IL_8C3A_123
IL_09705.9
IL_6S47_1131/AA/3012:3014,
1/AA/3040:3042
No text annotation
Not in a motif group
homologous
IL_8C3A_124
IL_95997.1
IL_6S47_1141/AA/3018:3025,
1/AA/3030:3036
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_5TBW_116
IL_04346.7
IL_6S47_1151/AA/3047:3051,
1/AA/3091:3094
Major groove minor groove platform with tHH
Not in a motif group
homologous
IL_5TBW_117
IL_37712.2
IL_6S47_1161/AA/3054:3059,
1/AA/3084:3088
UAA/GAN related
Not in a motif group
homologous
IL_5TBW_118
IL_17136.1
IL_6S47_1171/AA/3063:3064,
1/AA/3077:3080
No text annotation
Not in a motif group
homologous
IL_8C3A_128
IL_71530.2
IL_6S47_1181/AA/3103:3107,
1/AA/3127:3131
No text annotation
Not in a motif group
homologous
IL_8C3A_129
IL_89002.2
IL_6S47_1191/AA/3162:3166,
1/AA/3284:3288
No text annotation
Not in a motif group
homologous
IL_5TBW_121
IL_05145.2
IL_6S47_1201/AA/3168:3170,
1/AA/3280:3282
No text annotation
Not in a motif group
homologous
IL_5TBW_122
IL_95997.1
IL_6S47_1211/AA/3177:3179,
1/AA/3210:3211
Single bulged A
Not in a motif group
homologous
IL_5TBW_123
IL_37497.3
IL_6S47_1221/AA/3179:3188,
1/AA/3204:3210
No text annotation
Not in a motif group
geometric
IL_5TBW_124
IL_15174.1
IL_6S47_1231/AA/3193:3194,
1/AA/3197:3199
Single bulged U
Not in a motif group
homologous
IL_5TBW_125
IL_83039.14
IL_6S47_1241/AA/3225:3229,
1/AA/3258:3260
No text annotation
Not in a motif group
homologous
IL_8C3A_133
IL_19389.6
IL_6S47_1251/AA/3233:3235,
1/AA/3252:3254
No text annotation
Not in a motif group
geometric
IL_3D0U_006
IL_95997.1
IL_6S47_1261/AA/3235:3238,
1/AA/3249:3252
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5TBW_128
IL_30621.3
IL_6S47_1271/AA/3300:3303,
1/AA/3311:3314
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5TBW_129
IL_30621.3
IL_6S47_1281/AA/3318:3320,
1/AA/3387:3388
Single bulged U
Not in a motif group
geometric
IL_5TBW_130
IL_83039.14
IL_6S47_1291/AA/3324:3325,
1/AA/3381:3383
Single bulged U
Not in a motif group
homologous
IL_5TBW_131
IL_83039.14
IL_6S47_1301/AA/3328:3330,
1/AA/3373:3378
No text annotation
Not in a motif group
homologous
IL_8C3A_138
IL_90933.2
IL_6S47_1311/AA/3332:3337,
1/AA/3367:3371
No text annotation
Not in a motif group
homologous
IL_8C3A_139
IL_83162.5
IL_6S47_1321/AA/3340:3342,
1/AA/3363:3364
Single bulged U
Not in a motif group
geometric
IL_5TBW_134
IL_83039.14
IL_6S47_1331/AA/3342:3345,
1/AA/3360:3363
No text annotation
Not in a motif group
homologous
IL_8C3A_141
IL_09705.9
IL_6S47_1341/AA/3349:3350,
1/AA/3353:3356
No text annotation
Not in a motif group
homologous
IL_8C3A_142
IL_59677.2
IL_6S47_1351/AB/15:16,
1/AB/63:65
Single bulged A
Not in a motif group
homologous
IL_5TBW_372
IL_37497.3
IL_6S47_1361/AB/21:27,
1/AB/53:58
No text annotation
Not in a motif group
homologous
IL_5TBW_373
IL_10207.2
IL_6S47_1371/AB/28:29,
1/AB/49:52
Minor groove platform
Not in a motif group
geometric
IL_5TBW_374
IL_63797.2
IL_6S47_1381/AB/29:30,
1/AB/47:49
Single stack bend
Not in a motif group
homologous
IL_5TBW_375
IL_76488.2
IL_6S47_1391/AB/32:36,
1/AB/41:45
Symmetric double minor groove platform
Not in a motif group
homologous
IL_5TBW_376
IL_58103.6
IL_6S47_1401/AB/72:80,
1/AB/100:106
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5TBW_377
IL_04346.7
IL_6S47_1411/AB/84:87,
1/AB/94:96
No text annotation
Not in a motif group
homologous
IL_5TBW_378
IL_95997.1
IL_6S47_1421/AC/44:64,
1/AC/96:100
No text annotation
Not in a motif group
geometric
IL_5TBW_144
IL_44998.1
IL_6S47_1431/AC/64:66,
1/AC/93:96
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5TBW_145
IL_82068.2
IL_6S47_1441/AC/68:69,
1/AC/89:91
Single bulged U
Not in a motif group
homologous
IL_5TBW_146
IL_83039.14
IL_6S47_1451/BA/24:26,
1/BA/600:601
Single bulged C
Not in a motif group
homologous
IL_4V88_384
IL_61258.12
IL_6S47_1461/BA/35:37,
1/BA/471:473
UC cWW
Not in a motif group
homologous
IL_4V88_385
IL_51629.2
IL_6S47_1471/BA/37:41,
1/BA/466:471
No text annotation
Not in a motif group
geometric
IL_4V88_386
IL_41507.1
IL_6S47_1481/BA/42:48,
1/BA/431:433
No text annotation
Not in a motif group
geometric
IL_4V88_387
IL_33912.1
IL_6S47_1491/BA/50:52,
1/BA/428:429
Minor groove platform
Not in a motif group
homologous
IL_4V88_388
IL_93353.1
IL_6S47_1501/BA/58:63,
1/BA/87:89
No text annotation
Not in a motif group
homologous
IL_4V88_389
IL_95004.1
IL_6S47_1511/BA/64:69,
1/BA/82:86
No text annotation
Not in a motif group
homologous
IL_4V88_390
IL_77691.1
IL_6S47_1521/BA/109:112,
1/BA/302:305
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_391
IL_30621.3
IL_6S47_1531/BA/113:116,
1/BA/300:301
Multiple bulged bases
Not in a motif group
homologous
IL_4V88_392
IL_44546.1
IL_6S47_1541/BA/117:122,
1/BA/295:299
No text annotation
Not in a motif group
homologous
IL_4V88_393
IL_64181.2
IL_6S47_1551/BA/143:149,
1/BA/165:172
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_4V88_394
IL_80604.2
IL_6S47_1561/BA/150:152,
1/BA/162:164
No text annotation
Not in a motif group
homologous
IL_4V88_395
IL_53251.2
IL_6S47_1571/BA/186:189,
1/BA/196:199
Double sheared
Not in a motif group
homologous
IL_4V88_396
IL_09705.9
IL_6S47_1581/BA/204:206,
1/BA/259:263
Major groove platform with extra cWW
Not in a motif group
geometric
IL_4V88_397
IL_05564.2