6T59 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6T59_001 | 1/23/11:24 | No text annotation Not in a motif group | homologous HL_4WT8_218 NA | |
| HL_6T59_002 | 1/23/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4V9Q_214 HL_97724.2 | |
| HL_6T59_003 | 1/23/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5WWT_002 HL_33239.17 | |
| HL_6T59_004 | 1/54/37:44 | No text annotation Not in a motif group | geometric HL_5TBW_001 HL_23481.5 | |
| HL_6T59_005 | 1/54/68:73 | No text annotation Not in a motif group | homologous HL_5TBW_002 HL_96776.3 | |
| HL_6T59_006 | 1/54/89:95 | No text annotation Not in a motif group | homologous HL_5TBW_003 HL_67216.5 | |
| HL_6T59_007 | 1/54/131:137 | No text annotation Not in a motif group | ||
| HL_6T59_008 | 1/54/204:211 | T-loop with 1 bulged base Not in a motif group | homologous HL_5TBW_005 HL_68493.6 | |
| HL_6T59_009 | 1/54/222:226 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98557.5 | |
| HL_6T59_010 | 1/54/230:238 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.6 | |
| HL_6T59_011 | 1/54/289:298 | No text annotation Not in a motif group | homologous HL_5TBW_008 HL_54035.7 | |
| HL_6T59_012 | 1/54/314:323 | No text annotation Not in a motif group | geometric HL_4QLM_002 HL_17926.5 | |
| HL_6T59_013 | 1/54/368:373 | Other HL Not in a motif group | homologous HL_5TBW_010 HL_43074.18 | |
| HL_6T59_014 | 1/54/393:398 | GNRA Not in a motif group | homologous HL_5TBW_011 HL_43074.18 | |
| HL_6T59_015 | 1/54/520:641 | No text annotation Not in a motif group | ||
| HL_6T59_016 | 1/54/759:904 | No text annotation Not in a motif group | ||
| HL_6T59_017 | 1/54/962:970 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_98557.5 | |
| HL_6T59_018 | 1/54/989:1065 | No text annotation Not in a motif group | ||
| HL_6T59_019 | 1/54/1178:1183 | No text annotation Not in a motif group | ||
| HL_6T59_020 | 1/54/1317:1326 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_014 HL_33239.17 | |
| HL_6T59_021 | 1/54/1363:1374 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_18218.2 | |
| HL_6T59_022 | 1/54/1389:1394 | GNRA Not in a motif group | homologous HL_5TBW_016 HL_43074.18 | |
| HL_6T59_023 | 1/54/1406B:1411A | No text annotation Not in a motif group | ||
| HL_6T59_024 | 1/54/1436:1448 | No text annotation Not in a motif group | geometric HL_4ENC_001 HL_46142.8 | |
| HL_6T59_025 | 1/54/1479:1486 | No text annotation Not in a motif group | ||
| HL_6T59_026 | 1/54/1561:1566 | GNRA Not in a motif group | homologous HL_5TBW_019 HL_43074.18 | |
| HL_6T59_027 | 1/54/1593:1602 | No text annotation Not in a motif group | homologous HL_5TBW_020 HL_39334.5 | |
| HL_6T59_028 | 1/54/1627:1635 | No text annotation Not in a motif group | homologous HL_5TBW_021 HL_05832.1 | |
| HL_6T59_029 | 1/54/1675:1680 | No text annotation Not in a motif group | homologous HL_5TBW_022 HL_15942.5 | |
| HL_6T59_030 | 1/54/1763:1769 | GNRA Not in a motif group | homologous HL_5TBW_023 HL_43074.18 | |
| HL_6T59_031 | 1/54/1816:1823 | No text annotation Not in a motif group | homologous HL_5TBW_024 HL_54035.7 | |
| HL_6T59_032 | 1/54/1864:1870 | GNRA Not in a motif group | homologous HL_5TBW_025 HL_43074.18 | |
| HL_6T59_033 | 1/54/1886:1893 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_72451.5 | |
| HL_6T59_034 | 1/54/1972:1994 | No text annotation Not in a motif group | ||
| HL_6T59_035 | 1/54/2087:2270 | No text annotation Not in a motif group | ||
| HL_6T59_036 | 1/54/2317:2322 | GNRA Not in a motif group | homologous HL_5TBW_030 HL_43074.18 | |
| HL_6T59_037 | 1/54/2376:2384 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_031 HL_33239.17 | |
| HL_6T59_038 | 1/54/2420:2426 | No text annotation Not in a motif group | homologous HL_5TBW_032 HL_86880.5 | |
| HL_6T59_039 | 1/54/2458:2463 | Other HL Not in a motif group | homologous HL_5TBW_033 HL_43074.18 | |
| HL_6T59_040 | 1/54/2487:2491 | No text annotation Not in a motif group | ||
| HL_6T59_041 | 1/54/2523:2532 | No text annotation Not in a motif group | homologous HL_5TBW_035 HL_78457.4 | |
| HL_6T59_042 | 1/54/2561:2566 | GNRA Not in a motif group | geometric HL_4NLF_001 HL_43074.18 | |
| HL_6T59_043 | 1/54/2578:2583 | GNRA Not in a motif group | homologous HL_5TBW_036 HL_43074.18 | |
| HL_6T59_044 | 1/54/2624:2632 | No text annotation Not in a motif group | homologous HL_5TBW_037 HL_73793.2 | |
| HL_6T59_045 | 1/54/2664:2670 | Other HL Not in a motif group | geometric HL_4V9F_039 HL_68493.6 | |
| HL_6T59_046 | 1/54/2705:2710 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_98557.5 | |
| HL_6T59_047 | 1/54/2738:2742 | No text annotation Not in a motif group | homologous HL_5TBW_040 HL_69353.7 | |
| HL_6T59_048 | 1/54/2792:2799 | No text annotation Not in a motif group | homologous HL_5TBW_041 HL_66171.3 | |
| HL_6T59_049 | 1/54/2810:2816 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_02361.6 | |
| HL_6T59_050 | 1/54/2872:2877 | UNCG Not in a motif group | homologous HL_5TBW_043 HL_79299.11 | |
| HL_6T59_051 | 1/54/2901:3598 | No text annotation Not in a motif group | ||
| HL_6T59_052 | 1/54/3614:3618 | No text annotation Not in a motif group | homologous HL_5TBW_045 HL_99223.1 | |
| HL_6T59_053 | 1/54/3639:3649 | No text annotation Not in a motif group | homologous HL_5TBW_046 HL_43613.4 | |
| HL_6T59_054 | 1/54/3668:3674 | GNRA Not in a motif group | homologous HL_5TBW_047 HL_43074.18 | |
| HL_6T59_055 | 1/54/3724:3729 | Other HL Not in a motif group | homologous HL_5TBW_048 HL_43074.18 | |
| HL_6T59_056 | 1/54/3756:3768 | No text annotation Not in a motif group | ||
| HL_6T59_057 | 1/54/3796:3804 | No text annotation Not in a motif group | homologous HL_5TBW_050 HL_53760.4 | |
| HL_6T59_058 | 1/54/3873:3882 | No text annotation Not in a motif group | homologous HL_5TBW_051 HL_90642.5 | |
| HL_6T59_059 | 1/54/4100:4108 | No text annotation Not in a motif group | ||
| HL_6T59_060 | 1/54/4193:4201 | No text annotation Not in a motif group | homologous HL_5TBW_054 HL_46891.3 | |
| HL_6T59_061 | 1/54/4210:4222 | No text annotation Not in a motif group | homologous HL_5TBW_055 HL_19870.5 | |
| HL_6T59_062 | 1/54/4250:4258 | No text annotation Not in a motif group | homologous HL_5TBW_056 HL_76406.3 | |
| HL_6T59_063 | 1/54/4270:4277 | No text annotation Not in a motif group | homologous HL_5TBW_057 HL_46142.8 | |
| HL_6T59_064 | 1/54/4301:4309 | No text annotation Not in a motif group | homologous HL_5TBW_058 HL_14725.1 | |
| HL_6T59_065 | 1/54/4321:4326 | GNRA Not in a motif group | homologous HL_5TBW_059 HL_43074.18 | |
| HL_6T59_066 | 1/54/4352:4362 | No text annotation Not in a motif group | geometric HL_4V83_139 HL_16135.1 | |
| HL_6T59_067 | 1/54/4417:4425 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_36421.5 | |
| HL_6T59_068 | 1/54/4474:4481 | No text annotation Not in a motif group | homologous HL_5TBW_062 HL_92681.5 | |
| HL_6T59_069 | 1/54/4497:4503 | No text annotation Not in a motif group | homologous HL_5TBW_063 HL_26055.6 | |
| HL_6T59_070 | 1/54/4540:4545 | GNRA Not in a motif group | homologous HL_5TBW_064 HL_43074.18 | |
| HL_6T59_071 | 1/54/4603:4608 | GNRA Not in a motif group | homologous HL_5TBW_065 HL_43074.18 | |
| HL_6T59_072 | 1/54/4646:4651 | Ribsomal LSU H95 Not in a motif group | homologous HL_5TBW_066 HL_67719.1 | |
| HL_6T59_073 | 1/54/4688:4702 | No text annotation Not in a motif group | homologous HL_5TBW_067 HL_56677.5 | |
| HL_6T59_074 | 1/54/4775:4860 | No text annotation Not in a motif group | ||
| HL_6T59_075 | 1/54/4906:4915 | No text annotation Not in a motif group | geometric HL_7RQB_011 HL_98557.5 | |
| HL_6T59_076 | 1/54/4975:4983 | No text annotation Not in a motif group | homologous HL_5TBW_070 HL_05018.6 | |
| HL_6T59_077 | 1/54/5021:5028 | No text annotation Not in a motif group | ||
| HL_6T59_078 | 1/74/36:41 | No text annotation Not in a motif group | geometric HL_5TBW_185 HL_02733.5 | |
| HL_6T59_079 | 1/74/86:91 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_43074.18 | |
| HL_6T59_080 | 1/84/47:56 | No text annotation Not in a motif group | geometric HL_7A0S_001 HL_29414.1 | |
| HL_6T59_082 | 1/84/107:112 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_06569.2 | |
| HL_6T59_083 | 1/84/121:129 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6T59_081 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6T59_001 | 1/23/2:4, 1/23/69:71 | No text annotation Not in a motif group | homologous IL_5EL4_357 NA | |
| IL_6T59_002 | 1/54/6:7, 1/84/149:151 | Single bulged C Not in a motif group | geometric IL_7RQB_035 IL_61258.10 | |
| IL_6T59_003 | 1/54/12:14, 1/84/143:144 | Single bulged U Not in a motif group | homologous IL_5TBW_003 IL_83039.11 | |
| IL_6T59_004 | 1/54/16:18, 1/84/139:141 | No text annotation Not in a motif group | geometric IL_3ICQ_003 IL_01312.13 | |
| IL_6T59_005 | 1/54/26:27, 1/54/55:57 | Single stack bend Not in a motif group | homologous IL_5TBW_004 IL_04038.4 | |
| IL_6T59_006 | 1/54/30:37, 1/54/44:52 | No text annotation Not in a motif group | ||
| IL_6T59_007 | 1/54/81:88, 1/54/96:102 | No text annotation Not in a motif group | homologous IL_5TBW_006 IL_29509.1 | |
| IL_6T59_008 | 1/54/117:121, 1/54/152:154 | No text annotation Not in a motif group | ||
| IL_6T59_009 | 1/54/121:122, 1/54/147:152 | No text annotation Not in a motif group | homologous IL_5TBW_007 IL_19724.1 | |
| IL_6T59_010 | 1/54/125:126, 1/54/142:144 | Single bulged C Not in a motif group | geometric IL_1S03_006 IL_61258.10 | |
| IL_6T59_011 | 1/54/168:173, 1/54/263:267 | No text annotation Not in a motif group | ||
| IL_6T59_012 | 1/54/180:189, 1/54/252:256 | No text annotation Not in a motif group | ||
| IL_6T59_013 | 1/54/195:196, 1/54/244:246 | Single bulged C Not in a motif group | geometric IL_1DQF_001 IL_61258.10 | |
| IL_6T59_014 | 1/54/199:201, 1/54/214:215 | Single bulged U Not in a motif group | homologous IL_5TBW_012 IL_83039.11 | |
| IL_6T59_016 | 1/54/348:350, 1/84/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_80007.16 | |
| IL_6T59_017 | 1/54/387:390, 1/54/401:414 | No text annotation Not in a motif group | homologous IL_5TBW_014 IL_60992.5 | |
| IL_6T59_018 | 1/54/415:421, 1/84/13:19 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5TBW_015 IL_66414.5 | |
| IL_6T59_019 | 1/54/443:446, 1/54/1300:1304 | No text annotation Not in a motif group | geometric IL_4PHY_003 IL_05922.1 | |
| IL_6T59_020 | 1/54/448:450, 1/54/1297:1298 | No text annotation Not in a motif group | ||
| IL_6T59_021 | 1/54/459:460, 1/54/695:697 | Single bulged C Not in a motif group | geometric IL_1S03_002 IL_61258.10 | |
| IL_6T59_022 | 1/54/461:464, 1/54/691:694 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_001 IL_85877.10 | |
| IL_6T59_023 | 1/54/466:472, 1/54/682:689 | No text annotation Not in a motif group | ||
| IL_6T59_024 | 1/54/481:482, 1/54/672:673 | Single bulged C Not in a motif group | geometric IL_7KGA_004 IL_61258.10 | |
| IL_6T59_025 | 1/54/482:485, 1/54/671:672 | Multiple bulged bases Not in a motif group | geometric IL_6JXM_001 IL_13730.12 | |
| IL_6T59_026 | 1/54/487:488, 1/54/665:669 | Multiple bulged bases Not in a motif group | geometric IL_1R3E_002 IL_13730.12 | |
| IL_6T59_027 | 1/54/491:493, 1/54/661:662 | No text annotation Not in a motif group | ||
| IL_6T59_028 | 1/54/497:499, 1/54/656:657 | No text annotation Not in a motif group | ||
| IL_6T59_029 | 1/54/508:510, 1/54/649:650 | Single bulged A Not in a motif group | geometric IL_6WPI_001 IL_80007.16 | |
| IL_6T59_030 | 1/54/709:710, 1/54/1286:1288 | Single bulged G Not in a motif group | geometric IL_4LFB_036 IL_59137.10 | |
| IL_6T59_031 | 1/54/723:724, 1/54/942:945 | Multiple bulged bases Not in a motif group | geometric IL_7V9E_001 IL_13730.12 | |
| IL_6T59_032 | 1/54/727:731, 1/54/938:939 | No text annotation Not in a motif group | ||
| IL_6T59_033 | 1/54/732:735, 1/54/928:937 | No text annotation Not in a motif group | ||
| IL_6T59_034 | 1/54/737:739, 1/54/923:926 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_44093.1 | |
| IL_6T59_035 | 1/54/745:752, 1/54/911:919 | No text annotation Not in a motif group | geometric IL_5TBW_020 IL_94501.1 | |
| IL_6T59_036 | 1/54/1074:1076, 1/54/1234:1236 | No text annotation Not in a motif group | geometric IL_4V88_395 IL_87880.2 | |
| IL_6T59_037 | 1/54/1077:1080, 1/54/1219:1233 | No text annotation Not in a motif group | ||
| IL_6T59_038 | 1/54/1082:1084, 1/54/1213:1217 | Isolated near basepair Not in a motif group | geometric IL_7A0S_030 IL_42589.6 | |
| IL_6T59_039 | 1/54/1086:1087, 1/54/1209:1211 | Single bulged C Not in a motif group | geometric IL_3W3S_001 IL_61258.10 | |
| IL_6T59_040 | 1/54/1097:1169, 1/54/1192:1199 | No text annotation Not in a motif group | ||
| IL_6T59_041 | 1/54/1173:1175, 1/54/1186:1188 | Isolated cWH basepair Not in a motif group | geometric IL_5J7L_011 IL_42589.6 | |
| IL_6T59_042 | 1/54/1357:1360, 1/54/1379:1382 | No text annotation Not in a motif group | ||
| IL_6T59_043 | 1/54/1360:1361, 1/54/1376:1379 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_1NBS_009 IL_13730.12 | |
| IL_6T59_044 | 1/54/1425:1429, 1/54/1455:1460 | Triple sheared related Not in a motif group | geometric IL_4V9F_018 IL_64879.1 | |
| IL_6T59_045 | 1/54/1431:1434, 1/54/1450:1453 | Double sheared Not in a motif group | geometric IL_4KZD_002 IL_09705.7 | |
| IL_6T59_046 | 1/54/1467:1468, 1/54/1496:1498 | Single bulged A Not in a motif group | homologous IL_5TBW_024 IL_80007.16 | |
| IL_6T59_047 | 1/54/1474:1476, 1/54/1489:1490 | Single stack bend Not in a motif group | geometric IL_7A0S_005 IL_04038.4 | |
| IL_6T59_048 | 1/54/1520:1522, 1/54/1655:1657 | No text annotation Not in a motif group | geometric IL_5TBW_027 IL_01312.13 | |
| IL_6T59_049 | 1/54/1522:1526, 1/54/1648:1655 | No text annotation Not in a motif group | homologous IL_5TBW_028 IL_17470.5 | |
| IL_6T59_050 | 1/54/1550:1551, 1/54/1576:1578 | Single bulged G Not in a motif group | homologous IL_5TBW_029 IL_99645.1 | |
| IL_6T59_051 | 1/54/1551:1555, 1/54/1572:1576 | Triple sheared Not in a motif group | geometric IL_4V9F_027 IL_56467.6 | |
| IL_6T59_052 | 1/54/1586:1589, 1/54/1605:1607 | Major groove platform with extra cWW Not in a motif group | homologous IL_5TBW_031 IL_95485.6 | |
| IL_6T59_053 | 1/54/1590:1592, 1/54/1603:1604 | Single bulged U Not in a motif group | homologous IL_5TBW_032 IL_83039.11 | |
| IL_6T59_054 | 1/54/1624:1626, 1/54/1636:1640 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_033 IL_90991.5 | |
| IL_6T59_055 | 1/54/1671:1673, 1/54/1682:1684 | No text annotation Not in a motif group | homologous IL_5TBW_034 IL_01312.13 | |
| IL_6T59_056 | 1/54/1686:1688, 1/54/1848:1851 | No text annotation Not in a motif group | ||
| IL_6T59_057 | 1/54/1694:1721, 1/54/1841:1842 | No text annotation Not in a motif group | ||
| IL_6T59_058 | 1/54/1723:1725, 1/54/1838:1839 | Single bulged G Not in a motif group | homologous IL_5TBW_037 IL_59137.10 | |
| IL_6T59_059 | 1/54/1732:1737, 1/54/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7A0S_027 IL_89193.1 | |
| IL_6T59_060 | 1/54/1737:1738, 1/54/1790:1792 | Minor groove platform Not in a motif group | geometric IL_5TBW_039 IL_06437.11 | |
| IL_6T59_061 | 1/54/1739:1744, 1/54/1786:1789 | C-loop Not in a motif group | homologous IL_5TBW_040 IL_63596.4 | |
| IL_6T59_062 | 1/54/1745:1749, 1/54/1781:1785 | No text annotation Not in a motif group | ||
| IL_6T59_063 | 1/54/1749:1751, 1/54/1779:1781 | No text annotation Not in a motif group | homologous IL_5TBW_042 IL_01312.13 | |
| IL_6T59_064 | 1/54/1753:1756, 1/54/1776:1777 | No text annotation Not in a motif group | ||
| IL_6T59_065 | 1/54/1760:1763, 1/54/1769:1772 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_003 IL_85877.10 | |
| IL_6T59_066 | 1/54/1814:1816, 1/54/1823:1824 | Single bulged G Not in a motif group | geometric IL_4V88_442 IL_59137.10 | |
| IL_6T59_067 | 1/54/1858:1860, 1/54/1874:1876 | No text annotation Not in a motif group | homologous IL_5TBW_046 IL_01312.13 | |
| IL_6T59_068 | 1/54/1861:1863, 1/54/1871:1873 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_047 IL_67621.5 | |
| IL_6T59_069 | 1/54/1905:1909, 1/54/2067:2071 | UAA/GAN Not in a motif group | homologous IL_5TBW_048 IL_53523.5 | |
| IL_6T59_070 | 1/54/1911:1918, 1/54/2064:2065 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5TBW_049 IL_15861.6 | |
| IL_6T59_071 | 1/54/1918:1920, 1/54/2063:2064 | No text annotation Not in a motif group | ||
| IL_6T59_072 | 1/54/1920:1922, 1/54/2062:2063 | No text annotation Not in a motif group | ||
| IL_6T59_073 | 1/54/1926:1933, 1/54/2053:2058 | No text annotation Not in a motif group | geometric IL_5TBW_051 IL_17971.1 | |
| IL_6T59_074 | 1/54/1933:1944, 1/54/2038:2053 | No text annotation Not in a motif group | homologous IL_5TBW_052 IL_94878.1 | |
| IL_6T59_075 | 1/54/1946:1948, 1/54/2035:2036 | Single bulged U Not in a motif group | homologous IL_5TBW_053 IL_83039.11 | |
| IL_6T59_076 | 1/54/2083:2085, 1/54/2272:2273 | Single bulged U Not in a motif group | geometric IL_6CZR_156 IL_83039.11 | |
| IL_6T59_077 | 1/54/2290:2292, 1/54/2342:2345 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_057 IL_01312.13 | |
| IL_6T59_078 | 1/54/2299:2301, 1/54/2334:2335 | Single bulged A Not in a motif group | homologous IL_5TBW_058 IL_80007.16 | |
| IL_6T59_079 | 1/54/2302:2309, 1/54/2329:2333 | Kink-turn Not in a motif group | homologous IL_5TBW_059 IL_29549.9 | |
| IL_6T59_080 | 1/54/2312:2314, 1/54/2325:2326 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_80007.16 | |
| IL_6T59_081 | 1/54/2358:2364, 1/54/3858:3863 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_061 IL_35110.5 | |
| IL_6T59_082 | 1/54/2415:2419, 1/54/2427:2429 | C-loop Not in a motif group | geometric IL_7A0S_047 IL_63596.4 | |
| IL_6T59_083 | 1/54/2446:2450, 1/54/2509:2514 | UAA/GAN Not in a motif group | homologous IL_5TBW_063 IL_53523.5 | |
| IL_6T59_084 | 1/54/2477:2479, 1/54/2499:2500 | Not an internal loop Not in a motif group | geometric IL_4UYK_002 IL_31836.1 | |
| IL_6T59_085 | 1/54/2542:2547, 1/54/2772:2774 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4WF9_041 IL_42589.6 | |
| IL_6T59_086 | 1/54/2549:2550, 1/54/2768:2770 | Single bulged U Not in a motif group | geometric IL_2A64_002 IL_83039.11 | |
| IL_6T59_087 | 1/54/2589:2593, 1/54/2752:2756 | Triple sheared Not in a motif group | homologous IL_5TBW_067 IL_56467.6 | |
| IL_6T59_088 | 1/54/2613:2614, 1/54/2724:2726 | Single bulged A Not in a motif group | geometric IL_7A0S_012 IL_80007.16 | |
| IL_6T59_089 | 1/54/2614:2615, 1/54/2722:2724 | Single stack bend Not in a motif group | homologous IL_5TBW_070 IL_72766.2 | |
| IL_6T59_090 | 1/54/2646:2648, 1/54/2685:2688 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_4V9F_076 IL_38958.6 | |
| IL_6T59_091 | 1/54/2651:2653, 1/54/2681:2682 | Single bulged G Not in a motif group | geometric IL_4WF9_023 IL_59137.10 | |
| IL_6T59_092 | 1/54/2656:2662, 1/54/2672:2678 | Kink-turn Not in a motif group | homologous IL_5TBW_073 IL_76900.1 | |
| IL_6T59_093 | 1/54/2704:2705, 1/54/2710:2712 | No text annotation Not in a motif group | ||
| IL_6T59_094 | 1/54/2832:2838, 1/54/3850:3853 | No text annotation Not in a motif group | homologous IL_5TBW_074 IL_79393.8 | |
| IL_6T59_095 | 1/54/2844:2846, 1/54/3842:3844 | Isolated tWW turn Not in a motif group | homologous IL_5TBW_075 IL_54997.5 | |
| IL_6T59_096 | 1/54/2847:2850, 1/54/3840:3841 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5TBW_076 IL_80663.10 | |
| IL_6T59_097 | 1/54/2850:2855, 1/54/3837:3840 | Intercalated tWH Not in a motif group | geometric IL_5TBW_077 IL_98882.3 | |
| IL_6T59_098 | 1/54/2867:2872, 1/54/2877:2883 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_4V9F_063 IL_66584.5 | |
| IL_6T59_099 | 1/54/2889:2891, 1/54/3610:3612 | No text annotation Not in a motif group | homologous IL_5TBW_079 IL_01312.13 | |
| IL_6T59_100 | 1/54/2896:2897, 1/54/3602:3605 | No text annotation Not in a motif group | homologous IL_5TBW_080 IL_76195.1 | |
| IL_6T59_101 | 1/54/3632:3633, 1/54/3827:3829 | Single bulged A Not in a motif group | homologous IL_5TBW_082 IL_80007.16 | |
| IL_6T59_102 | 1/54/3660:3665, 1/54/3677:3684 | Kink-turn related Not in a motif group | homologous IL_5TBW_083 IL_95993.1 | |
| IL_6T59_103 | 1/54/3700:3703, 1/54/3749:3750 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_084 IL_72766.2 | |
| IL_6T59_104 | 1/54/3704:3705, 1/54/3745:3748 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_085 IL_13730.12 | |
| IL_6T59_105 | 1/54/3708:3710, 1/54/3741:3742 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_04038.4 | |
| IL_6T59_106 | 1/54/3710:3714, 1/54/3739:3741 | No text annotation Not in a motif group | ||
| IL_6T59_107 | 1/54/3715:3721, 1/54/3732:3738 | No text annotation Not in a motif group | homologous IL_5TBW_088 IL_36973.5 | |
| IL_6T59_108 | 1/54/3780:3781, 1/54/3811:3814 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_089 IL_69632.1 | |
| IL_6T59_109 | 1/54/3781:3792, 1/54/3808:3811 | No text annotation Not in a motif group | geometric IL_5TBW_090 IL_45481.1 | |
| IL_6T59_110 | 1/54/3895:3898, 1/54/4563:4565 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_091 IL_87630.5 | |
| IL_6T59_111 | 1/54/3900:3902, 1/54/4558:4561 | Minor groove platform with intercalation Not in a motif group | homologous IL_5TBW_092 IL_86964.1 | |
| IL_6T59_112 | 1/54/3913:3915, 1/54/4388:4389 | Single bulged U Not in a motif group | homologous IL_5TBW_093 IL_83039.11 | |
| IL_6T59_113 | 1/54/3916:3917, 1/54/4384:4387 | Minor groove platform Not in a motif group | homologous IL_5TBW_094 IL_06437.11 | |
| IL_6T59_114 | 1/54/3927:3929, 1/54/4181:4184 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_095 IL_38958.6 | |
| IL_6T59_115 | 1/54/4082:4088, 1/54/4161:4164 | No text annotation Not in a motif group | homologous IL_5TBW_096 IL_98353.1 | |
| IL_6T59_116 | 1/54/4191:4192, 1/54/4202:4204 | Single bulged A Not in a motif group | homologous IL_5TBW_098 IL_80007.16 | |
| IL_6T59_117 | 1/54/4243:4245, 1/54/4263:4267 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_099 IL_38958.6 | |
| IL_6T59_118 | 1/54/4291:4293, 1/54/4317:4318 | Single bulged A Not in a motif group | geometric IL_4V88_399 IL_80007.16 | |
| IL_6T59_119 | 1/54/4295:4298, 1/54/4312:4315 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_100 IL_85877.10 | |
| IL_6T59_120 | 1/54/4346:4350, 1/54/4364:4366 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_87332.1 | |
| IL_6T59_121 | 1/54/4400:4401, 1/54/4442:4444 | Major groove platform Not in a motif group | homologous IL_5TBW_102 IL_80663.10 | |
| IL_6T59_122 | 1/54/4401:4403, 1/54/4440:4442 | No text annotation Not in a motif group | geometric IL_5TBW_103 IL_05265.1 | |
| IL_6T59_123 | 1/54/4403:4405, 1/54/4439:4440 | Major groove platform Not in a motif group | geometric IL_5TBW_104 IL_80663.10 | |
| IL_6T59_124 | 1/54/4405:4407, 1/54/4435:4439 | No text annotation Not in a motif group | homologous IL_5TBW_105 IL_07931.5 | |
| IL_6T59_125 | 1/54/4412:4416, 1/54/4426:4430 | Triple sheared Not in a motif group | homologous IL_5TBW_106 IL_56467.6 | |
| IL_6T59_126 | 1/54/4453:4454, 1/54/4526:4528 | Major groove platform Not in a motif group | homologous IL_5TBW_107 IL_80663.10 | |
| IL_6T59_127 | 1/54/4456:4458, 1/54/4520:4524 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_108 IL_01312.13 | |
| IL_6T59_128 | 1/54/4458:4459, 1/54/4517:4520 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_109 IL_13730.12 | |
| IL_6T59_129 | 1/54/4466:4468, 1/54/4489:4491 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_01312.13 | |
| IL_6T59_130 | 1/54/4468:4470, 1/54/4485:4489 | No text annotation Not in a motif group | ||
| IL_6T59_131 | 1/54/4495:4497, 1/54/4503:4505 | No text annotation Not in a motif group | geometric IL_5TBW_112 IL_01312.13 | |
| IL_6T59_132 | 1/54/4537:4538, 1/54/4547:4549 | Single bulged A Not in a motif group | geometric IL_7RQB_101 IL_80007.16 | |
| IL_6T59_133 | 1/54/4580:4582, 1/54/4721:4723 | Isolated cWH basepair Not in a motif group | geometric IL_4E5C_001 IL_42589.6 | |
| IL_6T59_134 | 1/54/4582:4585, 1/54/4717:4721 | Double sheared Not in a motif group | geometric IL_5J7L_256 IL_09705.7 | |
| IL_6T59_135 | 1/54/4596:4603, 1/54/4608:4614 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_116 IL_04346.5 | |
| IL_6T59_136 | 1/54/4624:4629, 1/54/4669:4673 | No text annotation Not in a motif group | ||
| IL_6T59_137 | 1/54/4632:4637, 1/54/4662:4666 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_53523.5 | |
| IL_6T59_138 | 1/54/4638:4640, 1/54/4659:4661 | Isolated cWH basepair Not in a motif group | geometric IL_3R1C_012 IL_42589.6 | |
| IL_6T59_139 | 1/54/4641:4642, 1/54/4655:4658 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_119 IL_13730.12 | |
| IL_6T59_140 | 1/54/4680:4685, 1/54/4705:4710 | UAA/GAN with extra cWW Not in a motif group | geometric IL_5J7L_350 IL_49767.4 | |
| IL_6T59_141 | 1/54/4740:4746, 1/54/4954:4959 | No text annotation Not in a motif group | ||
| IL_6T59_142 | 1/54/4756:4766, 1/54/4868:4877 | No text annotation Not in a motif group | ||
| IL_6T59_143 | 1/54/4769:4773, 1/54/4862:4865 | No text annotation Not in a motif group | ||
| IL_6T59_144 | 1/54/4885:4888, 1/54/4931:4934 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4K27_003 IL_85877.10 | |
| IL_6T59_145 | 1/54/4890:4896, 1/54/4924:4929 | No text annotation Not in a motif group | ||
| IL_6T59_146 | 1/54/4897:4902, 1/54/4919:4923 | No text annotation Not in a motif group | ||
| IL_6T59_147 | 1/54/4972:4975, 1/54/4983:4986 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_129 IL_85877.10 | |
| IL_6T59_148 | 1/54/4992:4994, 1/54/5057:5059 | No text annotation Not in a motif group | geometric IL_3IVK_002 IL_01312.13 | |
| IL_6T59_149 | 1/54/4996:4997, 1/54/5053:5055 | Single bulged C Not in a motif group | geometric IL_1KUQ_002 IL_61258.10 | |
| IL_6T59_150 | 1/54/5000:5002, 1/54/5045:5050 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_132 IL_55456.1 | |
| IL_6T59_151 | 1/54/5003:5009, 1/54/5039:5044 | No text annotation Not in a motif group | ||
| IL_6T59_152 | 1/54/5012:5014, 1/54/5035:5036 | Single bulged C Not in a motif group | geometric IL_1S03_006 IL_61258.10 | |
| IL_6T59_153 | 1/54/5014:5017, 1/54/5032:5035 | tWS-tSW Not in a motif group | homologous IL_5TBW_135 IL_09705.7 | |
| IL_6T59_154 | 1/74/15:16, 1/74/62:64 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_80007.16 | |
| IL_6T59_155 | 1/74/21:27, 1/74/52:57 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_05523.1 | |
| IL_6T59_156 | 1/74/27:29, 1/74/48:52 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_094 IL_96042.4 | |
| IL_6T59_157 | 1/74/32:36, 1/74/41:45 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 IL_58103.5 | |
| IL_6T59_158 | 1/74/71:78, 1/74/98:104 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.5 | |
| IL_6T59_159 | 1/74/79:81, 1/74/95:97 | No text annotation Not in a motif group | geometric IL_4V88_470 IL_01312.13 | |
| IL_6T59_160 | 1/74/82:85, 1/74/92:94 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_01312.13 | |
| IL_6T59_161 | 1/84/64:67, 1/84/91:95 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6T59_015 | Minor groove platform |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6T59_001 | 1/54/112:116, 1/54/155:160, 1/54/275:278 | No text annotation Not in a motif group | ||
| J3_6T59_002 | 1/54/380:387, 1/54/414:415, 1/84/19:20 | No text annotation Not in a motif group | ||
| J3_6T59_003 | 1/54/980:984, 1/54/1070:1074, 1/54/1236:1275 | No text annotation Not in a motif group | ||
| J3_6T59_004 | 1/54/1531:1537, 1/54/1622:1624, 1/54/1640:1643 | No text annotation Not in a motif group | ||
| J3_6T59_005 | 1/54/1545:1548, 1/54/1580:1584, 1/54/1609:1614 | No text annotation Not in a motif group | homologous J3_5TBW_005 NA | |
| J3_6T59_006 | 1/54/1726:1727, 1/54/1802:1806, 1/54/1832:1837 | No text annotation Not in a motif group | ||
| J3_6T59_007 | 1/54/2393:2399, 1/54/2805:2807, 1/54/2819:2822 | No text annotation Not in a motif group | homologous J3_5TBW_008 NA | |
| J3_6T59_008 | 1/54/2402:2405, 1/54/2785:2791, 1/54/2800:2802 | No text annotation Not in a motif group | homologous J3_5TBW_009 NA | |
| J3_6T59_009 | 1/54/2440:2445, 1/54/2515:2519, 1/54/2536:2537 | No text annotation Not in a motif group | homologous J3_5TBW_010 NA | |
| J3_6T59_010 | 1/54/2551:2555, 1/54/2572:2575, 1/54/2757:2767 | No text annotation Not in a motif group | ||
| J3_6T59_011 | 1/54/2575:2576, 1/54/2585:2589, 1/54/2756:2757 | No text annotation Not in a motif group | ||
| J3_6T59_012 | 1/54/3937:3939, 1/54/4074:4078, 1/54/4168:4173 | No text annotation Not in a motif group | ||
| J3_6T59_013 | 1/54/4241:4243, 1/54/4267:4269, 1/54/4278:4283 | No text annotation Not in a motif group | ||
| J3_6T59_014 | 1/54/4463:4466, 1/54/4491:4493, 1/54/4507:4513 | No text annotation Not in a motif group | ||
| J3_6T59_015 | 1/54/4970:4972, 1/54/4986:4992, 1/54/5059:5063 | No text annotation Not in a motif group | ||
| J3_6T59_016 | 1/74/9:14, 1/74/65:66, 1/74/109:110 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA | |
| J3_6T59_017 | 1/84/44:45, 1/84/58:64, 1/84/95:99 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: