Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6VWN_0011/1/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_6VWN_0021/1/158:163No text annotation
Not in a motif group
geometric
HL_4V9F_003
HL_52841.1
HL_6VWN_0031/1/186:191GNRA
Not in a motif group
homologous
HL_5J7L_004
HL_42097.1
HL_6VWN_0041/1/207:212UNCG
Not in a motif group
homologous
HL_5J7L_005
HL_03562.2
HL_6VWN_0051/1/259:267No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_69023.2
HL_6VWN_0061/1/296:301GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_42097.1
HL_6VWN_0071/1/320:333No text annotation
Not in a motif group
homologous
HL_5J7L_008
HL_81205.2
HL_6VWN_0081/1/342:347No text annotation
Not in a motif group
homologous
HL_6CZR_080
HL_03562.2
HL_6VWN_0091/1/379:384GNRA
Not in a motif group
homologous
HL_5J7L_010
HL_42097.1
HL_6VWN_0101/1/419:424UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_6VWN_0111/1/462:470No text annotation
Not in a motif group
homologous
HL_5J7L_012
HL_84085.2
HL_6VWN_0121/1/522:527No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_75407.1
HL_6VWN_0131/1/617:623No text annotation
Not in a motif group
homologous
HL_5J7L_014
HL_26881.1
HL_6VWN_0141/1/689:698No text annotation
Not in a motif group
homologous
HL_6CZR_086
HL_12326.1
HL_6VWN_0151/1/726:731Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_6VWN_0161/1/786:796No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_6VWN_0171/1/862:867GNRA
Not in a motif group
homologous
HL_5J7L_019
HL_42097.1
HL_6VWN_0181/1/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_6VWN_0191/1/963:972No text annotation
Not in a motif group
homologous
HL_5J7L_021
NA
HL_6VWN_0201/1/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_6VWN_0211/1/1028:1033No text annotation
Not in a motif group
geometric
HL_4V88_198
HL_56691.2
HL_6VWN_0221/1/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_42097.1
HL_6VWN_0231/1/1089:1096No text annotation
Not in a motif group
homologous
HL_6CZR_096
HL_71554.2
HL_6VWN_0241/1/1134:1141No text annotation
Not in a motif group
HL_6VWN_0251/1/1165:1171No text annotation
Not in a motif group
homologous
HL_5J7L_026
HL_90617.2
HL_6VWN_0261/1/1265:1270No text annotation
Not in a motif group
homologous
HL_6CZR_099
NA
HL_6VWN_0271/1/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_6VWN_0281/1/1356:1366No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_6VWN_0291/1/1449:1454UNCG
Not in a motif group
homologous
HL_5J7L_030
HL_03562.2
HL_6VWN_0301/1/1515:1520No text annotation
Not in a motif group
homologous
HL_6CZR_103
NA
HL_6VWN_0311/2/59:68No text annotation
Not in a motif group
homologous
HL_7A0S_001
HL_99167.1
HL_6VWN_0321/2/87:95No text annotation
Not in a motif group
homologous
HL_5J7L_135
HL_84193.1
HL_6VWN_0331/2/123:128No text annotation
Not in a motif group
homologous
HL_4WF9_003
HL_75407.1
HL_6VWN_0341/2/137:142No text annotation
Not in a motif group
geometric
HL_2Y9H_003
HL_16173.1
HL_6VWN_0351/2/158:168No text annotation
Not in a motif group
homologous
HL_5J7L_138
HL_81820.1
HL_6VWN_0361/2/194:201No text annotation
Not in a motif group
homologous
HL_4WF9_006
HL_06192.2
HL_6VWN_0371/2/225:230No text annotation
Not in a motif group
homologous
HL_5J7L_140
HL_27930.1
HL_6VWN_0381/2/246:252No text annotation
Not in a motif group
homologous
HL_5J7L_141
HL_67216.7
HL_6VWN_0391/2/305:312T-loop with 1 bulged base
Not in a motif group
homologous
HL_5J7L_142
HL_89380.2
HL_6VWN_0401/2/327:335No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.8
HL_6VWN_0411/2/382:392No text annotation
Not in a motif group
homologous
HL_5J7L_145
HL_91503.4
HL_6VWN_0421/2/410:417No text annotation
Not in a motif group
homologous
HL_7A0S_014
HL_96598.1
HL_6VWN_0431/2/462:467GNRA
Not in a motif group
homologous
HL_4WF9_015
HL_42097.1
HL_6VWN_0441/2/487:493No text annotation
Not in a motif group
homologous
HL_5J7L_148
HL_42097.1
HL_6VWN_0451/2/543:550No text annotation
Not in a motif group
geometric
HL_2Y9H_005
HL_47100.1
HL_6VWN_0461/2/566:575T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_150
HL_89380.2
HL_6VWN_0471/2/611:617No text annotation
Not in a motif group
HL_6VWN_0481/2/629:634GNRA
Not in a motif group
homologous
HL_5J7L_152
HL_42097.1
HL_6VWN_0491/2/641:647GNRA with one bulged base
Not in a motif group
homologous
HL_4WF9_021
HL_42097.1
HL_6VWN_0501/2/712:719No text annotation
Not in a motif group
homologous
HL_5J7L_154
HL_84085.2
HL_6VWN_0511/2/744:753No text annotation
Not in a motif group
homologous
HL_4WF9_023
HL_39334.6
HL_6VWN_0521/2/779:785No text annotation
Not in a motif group
geometric
HL_6JQ6_004
HL_03562.2
HL_6VWN_0531/2/826:831No text annotation
Not in a motif group
homologous
HL_5J7L_157
HL_64365.1
HL_6VWN_0541/2/885:891No text annotation
Not in a motif group
HL_6VWN_0551/2/955:962No text annotation
Not in a motif group
homologous
HL_7A0S_026
HL_42097.1
HL_6VWN_0561/2/978:985No text annotation
Not in a motif group
homologous
HL_7A0S_027
HL_64430.2
HL_6VWN_0571/2/1172:1177No text annotation
Not in a motif group
HL_6VWN_0581/2/1222:1227Other HL
Not in a motif group
homologous
HL_5J7L_164
HL_87030.2
HL_6VWN_0591/2/1280:1290No text annotation
Not in a motif group
HL_6VWN_0601/2/1324:1330No text annotation
Not in a motif group
homologous
HL_5J7L_166
HL_46680.1
HL_6VWN_0611/2/1363:1368Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_87030.2
HL_6VWN_0621/2/1389:1398No text annotation
Not in a motif group
homologous
HL_5J7L_168
HL_69023.2
HL_6VWN_0631/2/1451:1459No text annotation
Not in a motif group
HL_6VWN_0641/2/1492:1498No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_46680.1
HL_6VWN_0651/2/1533:1538UNCG
Not in a motif group
homologous
HL_5J7L_171
HL_03562.2
HL_6VWN_0661/2/1565:1568No text annotation
Not in a motif group
homologous
HL_7RQB_039
HL_38927.2
HL_6VWN_0671/2/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_6VWN_0681/2/1630:1636GNRA with one bulged base
Not in a motif group
homologous
HL_5J7L_174
HL_42097.1
HL_6VWN_0691/2/1691:1696UNCG
Not in a motif group
geometric
HL_4PMI_004
HL_03562.2
HL_6VWN_0701/2/1728:1731No text annotation
Not in a motif group
geometric
HL_5TBW_071
HL_53837.1
HL_6VWN_0711/2/1752:1756No text annotation
Not in a motif group
homologous
HL_5J7L_177
HL_76539.2
HL_6VWN_0721/2/1777:1787No text annotation
Not in a motif group
homologous
HL_5J7L_178
HL_43613.5
HL_6VWN_0731/2/1806:1811No text annotation
Not in a motif group
homologous
HL_5J7L_179
HL_42097.1
HL_6VWN_0741/2/1868:1873No text annotation
Not in a motif group
HL_6VWN_0751/2/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_6VWN_0761/2/1949:1957No text annotation
Not in a motif group
homologous
HL_5J7L_182
HL_51824.1
HL_6VWN_0771/2/2027:2036No text annotation
Not in a motif group
homologous
HL_4WF9_047
HL_90642.6
HL_6VWN_0781/2/2142:2149No text annotation
Not in a motif group
HL_6VWN_0791/2/2209:2215No text annotation
Not in a motif group
homologous
HL_5J7L_185
HL_16845.6
HL_6VWN_0801/2/2248:2256No text annotation
Not in a motif group
homologous
HL_7A0S_052
HL_53171.2
HL_6VWN_0811/2/2264:2276No text annotation
Not in a motif group
homologous
HL_7RQB_054
HL_19870.6
HL_6VWN_0821/2/2303:2313No text annotation
Not in a motif group
homologous
HL_7RQB_055
HL_11805.3
HL_6VWN_0831/2/2324:2331No text annotation
Not in a motif group
homologous
HL_5J7L_189
HL_12078.2
HL_6VWN_0841/2/2356:2361Other HL
Not in a motif group
homologous
HL_5J7L_190
HL_87030.2
HL_6VWN_0851/2/2374:2379GNRA
Not in a motif group
homologous
HL_4WF9_054
HL_42097.1
HL_6VWN_0861/2/2404:2413No text annotation
Not in a motif group
homologous
HL_7A0S_058
HL_30784.2
HL_6VWN_0871/2/2471:2479No text annotation
Not in a motif group
homologous
HL_4WF9_056
HL_06192.2
HL_6VWN_0881/2/2528:2535No text annotation
Not in a motif group
homologous
HL_5J7L_194
HL_88526.2
HL_6VWN_0891/2/2551:2557No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_6VWN_0901/2/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_42097.1
HL_6VWN_0911/2/2658:2663No text annotation
Not in a motif group
geometric
HL_7A0S_063
HL_42097.1
HL_6VWN_0921/2/2701:2706Ribsomal LSU H95
Not in a motif group
homologous
HL_5J7L_198
HL_46680.1
HL_6VWN_0931/2/2745:2759No text annotation
Not in a motif group
homologous
HL_5J7L_199
HL_56677.7
HL_6VWN_0941/2/2795:2801No text annotation
Not in a motif group
HL_6VWN_0951/2/2819:2827No text annotation
Not in a motif group
homologous
HL_5J7L_201
HL_27930.1
HL_6VWN_0961/2/2856:2861No text annotation
Not in a motif group
homologous
HL_7A0S_068
HL_42097.1
HL_6VWN_0971/3/38:44No text annotation
Not in a motif group
geometric
HL_2Y9H_003
HL_16173.1
HL_6VWN_0981/3/86:90No text annotation
Not in a motif group
homologous
HL_5J7L_204
HL_38927.2
HL_6VWN_0991/4/74:79No text annotation
Not in a motif group
HL_6VWN_1001/5/13:22No text annotation
Not in a motif group
HL_6VWN_1011/5/31:39tRNA anticodon loop
Not in a motif group
homologous
HL_4V90_033
HL_53597.2
HL_6VWN_1021/5/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4YYE_003
HL_22280.1

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6VWN_0011/1/30:32,
1/1/552:553
Single bulged G
Not in a motif group
homologous
IL_5J7L_001
IL_00225.2
IL_6VWN_0021/1/44:45,
1/1/396:398
Single bulged A
Not in a motif group
homologous
IL_5J7L_002
IL_37497.2
IL_6VWN_0031/1/47:52,
1/1/359:361
Decoding loop related
Not in a motif group
geometric
IL_2O3X_003
IL_82842.2
IL_6VWN_0041/1/54:56,
1/1/356:357
Minor groove platform
Not in a motif group
homologous
IL_5J7L_004
IL_93353.1
IL_6VWN_0051/1/63:66,
1/1/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_6CZR_117
IL_76389.1
IL_6VWN_0061/1/67:69,
1/1/99:102
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_65006.1
IL_6VWN_0071/1/70:73,
1/1/97:98
Minor groove platform
Not in a motif group
homologous
IL_5J7L_007
IL_15052.1
IL_6VWN_0081/1/75:76,
1/1/93:95
Major groove intercalation
Not in a motif group
geometric
IL_5J7L_352
IL_16396.2
IL_6VWN_0091/1/128:131,
1/1/231:233
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_009
IL_82068.2
IL_6VWN_0101/1/132:136,
1/1/227:230
No text annotation
Not in a motif group
homologous
IL_4LFB_008
IL_58764.3
IL_6VWN_0111/1/144:146,
1/1/176:178
Isolated cWH basepair
Not in a motif group
homologous
IL_5J7L_011
IL_51629.2
IL_6VWN_0121/1/147:154,
1/1/167:175
No text annotation
Not in a motif group
IL_6VWN_0131/1/203:206,
1/1/213:214
No text annotation
Not in a motif group
IL_6VWN_0141/1/242:247,
1/1/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4LFB_011
IL_45067.2
IL_6VWN_0151/1/249:252,
1/1/274:275
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_48100.2
IL_6VWN_0161/1/292:293,
1/1/304:308
C-loop
Not in a motif group
homologous
IL_6CZR_125
IL_37712.2
IL_6VWN_0171/1/367:369,
1/1/392:393
Single bulged U
Not in a motif group
geometric
IL_4V9F_074
IL_83039.13
IL_6VWN_0181/1/371:375,
1/1/389:390
C-loop
Not in a motif group
geometric
IL_4LFB_015
IL_75255.1
IL_6VWN_0191/1/375:376,
1/1/387:389
Single bulged G
Not in a motif group
homologous
IL_5J7L_019
IL_00225.2
IL_6VWN_0201/1/409:416,
1/1/427:433
No text annotation
Not in a motif group
homologous
IL_5J7L_020
IL_28026.1
IL_6VWN_0211/1/440:442,
1/1/492:497
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_22248.1
IL_6VWN_0221/1/446:450,
1/1/483:488
tSH-tHW-tWW
Not in a motif group
homologous
IL_5J7L_022
IL_88269.3
IL_6VWN_0231/1/450:454,
1/1/479:483
No text annotation
Not in a motif group
IL_6VWN_0241/1/454:455,
1/1/477:479
Single stack bend
Not in a motif group
geometric
IL_5J7L_032
IL_76488.2
IL_6VWN_0251/1/504:511,
1/1/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4LFB_020
IL_15861.7
IL_6VWN_0261/1/515:521,
1/1/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_6VWN_0271/1/569:575,
1/1/880:881
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_6VWN_0281/1/580:584,
1/1/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_027
IL_17136.1
IL_6VWN_0291/1/594:596,
1/1/644:645
Major groove platform
Not in a motif group
homologous
IL_4LFB_024
IL_27635.1
IL_6VWN_0301/1/597:598,
1/1/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4LFB_025
IL_09061.6
IL_6VWN_0311/1/605:612,
1/1/628:633
No text annotation
Not in a motif group
homologous
IL_5J7L_030
IL_78349.1
IL_6VWN_0321/1/654:655,
1/1/751:754
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_5J7L_031
IL_50694.2
IL_6VWN_0331/1/659:660,
1/1/745:747
Single stack bend
Not in a motif group
homologous
IL_5J7L_032
IL_76488.2
IL_6VWN_0341/1/662:666,
1/1/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_71110.1
IL_6VWN_0351/1/673:678,
1/1/712:717
No text annotation
Not in a motif group
homologous
IL_4LFB_030
IL_04668.1
IL_6VWN_0361/1/684:688,
1/1/699:706
No text annotation
Not in a motif group
IL_6VWN_0371/1/774:778,
1/1/804:805
Left turn
Not in a motif group
homologous
IL_4LFB_032
IL_29346.1
IL_6VWN_0381/1/779:783,
1/1/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_037
IL_17136.1
IL_6VWN_0391/1/887:894,
1/1/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_5J7L_038
IL_24606.2
IL_6VWN_0401/1/922:924,
1/1/1392:1395
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_4V9F_097
IL_82068.2
IL_6VWN_0411/1/925:927,
1/1/1390:1391
Single bulged G
Not in a motif group
homologous
IL_4LFB_036
IL_00225.2
IL_6VWN_0421/1/953:954,
1/1/1226:1228
No text annotation
Not in a motif group
homologous
IL_6CZR_150
NA
IL_6VWN_0431/1/993:997,
1/1/1044:1045
Minor groove platform
Not in a motif group
homologous
IL_6CZR_151
IL_47078.1
IL_6VWN_0441/1/998:999,
1/1/1041:1043
Single stack bend
Not in a motif group
homologous
IL_5J7L_044
IL_76488.2
IL_6VWN_0451/1/1048:1050,
1/1/1208:1209
Single bulged U
Not in a motif group
homologous
IL_5J7L_046
IL_83039.13
IL_6VWN_0461/1/1051:1056,
1/1/1204:1207
No text annotation
Not in a motif group
IL_6VWN_0471/1/1057:1058,
1/1/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_93353.1
IL_6VWN_0481/1/1060:1061,
1/1/1195:1197
Single bulged U
Not in a motif group
homologous
IL_4LFB_046
IL_83039.13
IL_6VWN_0491/1/1061:1063,
1/1/1193:1195
No text annotation
Not in a motif group
geometric
IL_5J7L_050
IL_95997.1
IL_6VWN_0501/1/1124:1128,
1/1/1144:1149
No text annotation
Not in a motif group
homologous
IL_5J7L_051
IL_93211.1
IL_6VWN_0511/1/1129:1132,
1/1/1142:1143
Minor groove platform
Not in a motif group
geometric
IL_3IWN_005
IL_15052.1
IL_6VWN_0521/1/1132:1134,
1/1/1141:1142
Single stack bend
Not in a motif group
geometric
IL_5TBW_004
IL_76488.2
IL_6VWN_0531/1/1158:1161,
1/1/1175:1181
No text annotation
Not in a motif group
homologous
IL_5J7L_053
IL_42032.1
IL_6VWN_0541/1/1247:1253,
1/1/1284:1290
No text annotation
Not in a motif group
homologous
IL_5J7L_054
IL_09129.1
IL_6VWN_0551/1/1255:1258,
1/1/1277:1282
No text annotation
Not in a motif group
homologous
IL_4LFB_052
IL_84205.1
IL_6VWN_0561/1/1259:1263,
1/1/1272:1276
Triple sheared
Not in a motif group
homologous
IL_5J7L_056
IL_56467.8
IL_6VWN_0571/1/1303:1308,
1/1/1329:1334
No text annotation
Not in a motif group
homologous
IL_4LFB_055
IL_19954.2
IL_6VWN_0581/1/1399:1401,
1/1/1501:1504
No text annotation
Not in a motif group
geometric
IL_5J7L_058
IL_36143.3
IL_6VWN_0591/1/1401:1404,
1/1/1497:1501
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_6VWN_0601/1/1405:1409,
1/1/1491:1496
No text annotation
Not in a motif group
IL_6VWN_0611/1/1412:1414,
1/1/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_6VWN_0621/1/1416:1419,
1/1/1481:1484
Double sheared
Not in a motif group
homologous
IL_6CZR_169
IL_09705.9
IL_6VWN_0631/1/1430:1435,
1/1/1466:1470
Triple sheared related
Not in a motif group
geometric
IL_4V9F_018
IL_64879.2
IL_6VWN_0641/1/1440:1442,
1/1/1460:1461
Major groove platform
Not in a motif group
geometric
IL_7RQB_092
IL_27635.1
IL_6VWN_0651/1/1445:1448,
1/1/1455:1457
Decoding loop related
Not in a motif group
geometric
IL_2O3X_003
IL_82842.2
IL_6VWN_0661/2/24:30,
1/2/510:516
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_245
IL_66414.6
IL_6VWN_0671/2/36:37,
1/2/442:444
Single bulged A
Not in a motif group
homologous
IL_7A0S_002
IL_37497.2
IL_6VWN_0681/2/43:44,
1/2/434:436
Minor groove platform
Not in a motif group
homologous
IL_5J7L_247
IL_42622.2
IL_6VWN_0691/2/81:85,
1/2/97:105
No text annotation
Not in a motif group
homologous
IL_5J7L_248
IL_93699.1
IL_6VWN_0701/2/183:184,
1/2/212:214
Single stack bend
Not in a motif group
homologous
IL_7A0S_005
IL_76488.2
IL_6VWN_0711/2/188:194,
1/2/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_7A0S_006
IL_04346.7
IL_6VWN_0721/2/239:245,
1/2/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_251
IL_76042.2
IL_6VWN_0731/2/269:271,
1/2/366:370
No text annotation
Not in a motif group
IL_6VWN_0741/2/274:281,
1/2/359:363
No text annotation
Not in a motif group
IL_6VWN_0751/2/293:295,
1/2/343:347
No text annotation
Not in a motif group
homologous
IL_5J7L_254
IL_69440.1
IL_6VWN_0761/2/481:484,
1/2/496:509
No text annotation
Not in a motif group
geometric
IL_5J7L_255
IL_60992.6
IL_6VWN_0771/2/536:539,
1/2/554:557
Double sheared
Not in a motif group
homologous
IL_5J7L_256
IL_09705.9
IL_6VWN_0781/2/564:566,
1/2/575:577
No text annotation
Not in a motif group
geometric
IL_4WF9_017
IL_95997.1
IL_6VWN_0791/2/606:610,
1/2/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_5J7L_258
IL_17136.1
IL_6VWN_0801/2/672:674,
1/2/806:808
No text annotation
Not in a motif group
homologous
IL_5J7L_259
IL_95997.1
IL_6VWN_0811/2/674:678,
1/2/799:806
tHW-tHW cross-strand stack
Not in a motif group
geometric
IL_5J7L_260
IL_17470.6
IL_6VWN_0821/2/697:698,
1/2/763:765
Single bulged A
Not in a motif group
geometric
IL_4V9F_025
IL_37497.2
IL_6VWN_0831/2/702:703,
1/2/728:730
Single bulged G
Not in a motif group
homologous
IL_7RQB_020
IL_00225.2
IL_6VWN_0841/2/703:707,
1/2/724:728
Triple sheared
Not in a motif group
geometric
IL_7RQB_021
IL_56467.8
IL_6VWN_0851/2/738:740,
1/2/757:758
Major groove platform
Not in a motif group
homologous
IL_5J7L_264
IL_27635.1
IL_6VWN_0861/2/775:777,
1/2/787:791
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_265
IL_90991.6
IL_6VWN_0871/2/844:847,
1/2/933:934
Other IL
Not in a motif group
homologous
IL_5J7L_267
IL_92001.1
IL_6VWN_0881/2/847:848,
1/2/930:933
Multiple bulged bases
Not in a motif group
geometric
IL_5WTK_001
IL_16396.2
IL_6VWN_0891/2/850:851,
1/2/926:928
Single stack bend
Not in a motif group
homologous
IL_5J7L_269
IL_76488.2
IL_6VWN_0901/2/856:862,
1/2/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_5J7L_270
IL_93830.3
IL_6VWN_0911/2/862:863,
1/2/913:915
Single bulged G
Not in a motif group
homologous
IL_5J7L_271
IL_00225.2
IL_6VWN_0921/2/864:868,
1/2/909:912
C-loop
Not in a motif group
homologous
IL_5J7L_272
IL_63596.6
IL_6VWN_0931/2/870:872,
1/2/905:907
Isolated cWS basepair
Not in a motif group
homologous
IL_4WF9_034
IL_52767.2
IL_6VWN_0941/2/874:879,
1/2/898:903
No text annotation
Not in a motif group
IL_6VWN_0951/2/880:881,
1/2/895:897
No text annotation
Not in a motif group
homologous
IL_5J7L_275
NA
IL_6VWN_0961/2/994:996,
1/2/1159:1160
Single bulged C
Not in a motif group
homologous
IL_7RQB_035
IL_61258.12
IL_6VWN_0971/2/998:1002,
1/2/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_7A0S_033
IL_89002.2
IL_6VWN_0981/2/1004:1011,
1/2/1150:1151
SSU/LSU pseudoknot
Not in a motif group
geometric
IL_5J7L_278
IL_15861.7
IL_6VWN_0991/2/1011:1013,
1/2/1149:1150
Single bulged U
Not in a motif group
homologous
IL_5J7L_279
IL_83039.13
IL_6VWN_1001/2/1018:1024,
1/2/1140:1144
No text annotation
Not in a motif group
geometric
IL_4WF9_039
IL_57188.3
IL_6VWN_1011/2/1024:1030,
1/2/1124:1140
No text annotation
Not in a motif group
geometric
IL_5J7L_281
IL_50715.1
IL_6VWN_1021/2/1031:1034,
1/2/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_7A0S_038
IL_82068.2
IL_6VWN_1031/2/1038:1041,
1/2/1114:1117
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_283
IL_30621.2
IL_6VWN_1041/2/1196:1198,
1/2/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_5J7L_286
IL_52767.2
IL_6VWN_1051/2/1202:1206,
1/2/1240:1243
No text annotation
Not in a motif group
homologous
IL_5J7L_287
IL_91920.1
IL_6VWN_1061/2/1208:1215,
1/2/1234:1238
Kink-turn
Not in a motif group
homologous
IL_7RQB_047
IL_70923.2
IL_6VWN_1071/2/1262:1269,
1/2/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_289
IL_04346.7
IL_6VWN_1081/2/1310:1313,
1/2/1603:1604
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_5J7L_290
IL_50694.2
IL_6VWN_1091/2/1319:1323,
1/2/1331:1333
C-loop
Not in a motif group
homologous
IL_5J7L_291
IL_63596.6
IL_6VWN_1101/2/1351:1355,
1/2/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_5J7L_292
IL_89002.2
IL_6VWN_1111/2/1357:1361,
1/2/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_17136.1
IL_6VWN_1121/2/1415:1416,
1/2/1582:1587
No text annotation
Not in a motif group
homologous
IL_5J7L_294
IL_90348.1
IL_6VWN_1131/2/1417:1421,
1/2/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_7RQB_055
IL_89002.2
IL_6VWN_1141/2/1432:1435,
1/2/1557:1561
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_296
IL_55178.1
IL_6VWN_1151/2/1437:1440,
1/2/1551:1555
tSH-tHW
Not in a motif group
homologous
IL_5J7L_297
IL_04059.1
IL_6VWN_1161/2/1450:1451,
1/2/1459:1461
Single bulged U
Not in a motif group
homologous
IL_5J7L_298
IL_83039.13
IL_6VWN_1171/2/1468:1471,
1/2/1520:1524
No text annotation
Not in a motif group
homologous
IL_5J7L_299
IL_68574.2
IL_6VWN_1181/2/1474:1478,
1/2/1513:1517
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_300
IL_38862.1
IL_6VWN_1191/2/1481:1482,
1/2/1507:1510
No text annotation
Not in a motif group
homologous
IL_5J7L_301
IL_67474.4
IL_6VWN_1201/2/1489:1491,
1/2/1499:1500
Single bulged A
Not in a motif group
geometric
IL_4V9F_064
IL_37497.2
IL_6VWN_1211/2/1526:1530,
1/2/1541:1546
Triple sheared related
Not in a motif group
geometric
IL_4V9F_018
IL_64879.2
IL_6VWN_1221/2/1651:1656,
1/2/2004:2006
No text annotation
Not in a motif group
homologous
IL_5J7L_304
IL_12566.2
IL_6VWN_1231/2/1663:1665,
1/2/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_4WF9_063
IL_54997.7
IL_6VWN_1241/2/1666:1669,
1/2/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_7RQB_066
IL_50694.2
IL_6VWN_1251/2/1669:1674,
1/2/1990:1993
Intercalated tWH
Not in a motif group
homologous
IL_4WF9_065
IL_82842.2
IL_6VWN_1261/2/1686:1691,
1/2/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
homologous
IL_5J7L_308
IL_65969.2
IL_6VWN_1271/2/1712:1718,
1/2/1742:1746
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_309
IL_88269.3
IL_6VWN_1281/2/1720:1725,
1/2/1735:1740
No text annotation
Not in a motif group
IL_6VWN_1291/2/1727:1728,
1/2/1731:1733
Single bulged C
Not in a motif group
homologous
IL_5J7L_311
IL_61258.12
IL_6VWN_1301/2/1770:1771,
1/2/1980:1982
Single bulged A
Not in a motif group
homologous
IL_5J7L_312
IL_37497.2
IL_6VWN_1311/2/1798:1804,
1/2/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_7A0S_065
IL_17069.3
IL_6VWN_1321/2/1837:1840,
1/2/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_314
IL_88739.1
IL_6VWN_1331/2/1841:1842,
1/2/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_16396.2
IL_6VWN_1341/2/1846:1850,
1/2/1892:1894
No text annotation
Not in a motif group
IL_6VWN_1351/2/1865:1867,
1/2/1874:1877
No text annotation
Not in a motif group
IL_6VWN_1361/2/1933:1934,
1/2/1964:1967
Multiple bulged bases
Not in a motif group
homologous
IL_7A0S_071
IL_59677.2
IL_6VWN_1371/2/1934:1945,
1/2/1961:1964
No text annotation
Not in a motif group
geometric
IL_7A0S_072
IL_81589.2
IL_6VWN_1381/2/2050:2052,
1/2/2617:2618
Major groove platform
Not in a motif group
homologous
IL_5J7L_320
IL_27635.1
IL_6VWN_1391/2/2054:2056,
1/2/2612:2615
No text annotation
Not in a motif group
homologous
IL_5J7L_321
IL_54678.5
IL_6VWN_1401/2/2067:2069,
1/2/2442:2443
Single bulged U
Not in a motif group
homologous
IL_7A0S_075
IL_83039.13
IL_6VWN_1411/2/2070:2071,
1/2/2438:2441
Minor groove platform
Not in a motif group
homologous
IL_7RQB_081
IL_42622.2
IL_6VWN_1421/2/2081:2083,
1/2/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_5J7L_325
IL_38958.7
IL_6VWN_1431/2/2085:2087,
1/2/2232:2234
No text annotation
Not in a motif group
homologous
IL_5J7L_326
IL_95997.1
IL_6VWN_1441/2/2099:2105,
1/2/2184:2190
No text annotation
Not in a motif group
IL_6VWN_1451/2/2108:2122,
1/2/2176:2181
No text annotation
Not in a motif group
IL_6VWN_1461/2/2124:2127,
1/2/2161:2174
No text annotation
Not in a motif group
IL_6VWN_1471/2/2129:2138,
1/2/2153:2159
No text annotation
Not in a motif group
IL_6VWN_1481/2/2202:2204,
1/2/2220:2221
Single bulged U
Not in a motif group
homologous
IL_5J7L_331
IL_83039.13
IL_6VWN_1491/2/2297:2299,
1/2/2317:2321
No text annotation
Not in a motif group
geometric
IL_5J7L_332
IL_56105.1
IL_6VWN_1501/2/2350:2353,
1/2/2364:2367
Double sheared
Not in a motif group
homologous
IL_7RQB_089
IL_09705.9
IL_6VWN_1511/2/2401:2403,
1/2/2414:2415
Single bulged U
Not in a motif group
homologous
IL_4WF9_088
IL_83039.13
IL_6VWN_1521/2/2454:2455,
1/2/2496:2498
Major groove platform
Not in a motif group
homologous
IL_7RQB_092
IL_27635.1
IL_6VWN_1531/2/2457:2459,
1/2/2493:2494
Major groove platform
Not in a motif group
homologous
IL_7A0S_085
IL_27635.1
IL_6VWN_1541/2/2459:2461,
1/2/2489:2493
Major groove minor groove platform with extra cWW
Not in a motif group
geometric
IL_7RQB_094
IL_92788.2
IL_6VWN_1551/2/2466:2470,
1/2/2480:2484
Triple sheared
Not in a motif group
homologous
IL_5J7L_338
IL_56467.8
IL_6VWN_1561/2/2507:2508,
1/2/2580:2582
Major groove platform
Not in a motif group
homologous
IL_7A0S_088
IL_76223.2
IL_6VWN_1571/2/2510:2512,
1/2/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_4WF9_095
IL_90933.2
IL_6VWN_1581/2/2512:2513,
1/2/2571:2574
No text annotation
Not in a motif group
geometric
IL_5J7L_341
IL_71530.2
IL_6VWN_1591/2/2522:2523,
1/2/2540:2543
Minor groove platform with intercalation
Not in a motif group
homologous
IL_5J7L_342
IL_95601.3
IL_6VWN_1601/2/2591:2592,
1/2/2601:2603
No text annotation
Not in a motif group
IL_6VWN_1611/2/2636:2640,
1/2/2774:2782
No text annotation
Not in a motif group
homologous
IL_5J7L_345
IL_04638.1
IL_6VWN_1621/2/2652:2658,
1/2/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
homologous
IL_7A0S_094
IL_16458.1
IL_6VWN_1631/2/2680:2684,
1/2/2725:2727
C-loop
Not in a motif group
homologous
IL_5J7L_347
IL_63596.6
IL_6VWN_1641/2/2687:2691,
1/2/2718:2722
No text annotation
Not in a motif group
homologous
IL_5J7L_348
IL_08296.3
IL_6VWN_1651/2/2695:2696,
1/2/2711:2714
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_349
IL_71530.2
IL_6VWN_1661/2/2737:2742,
1/2/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_7A0S_098
IL_49767.5
IL_6VWN_1671/2/2806:2811,
1/2/2889:2892
No text annotation
Not in a motif group
geometric
IL_5J7L_351
IL_49460.2
IL_6VWN_1681/2/2838:2839,
1/2/2878:2880
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_352
IL_16396.2
IL_6VWN_1691/2/2843:2846,
1/2/2870:2874
Multiple bulged bases with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_353
IL_58764.3
IL_6VWN_1701/2/2847:2852,
1/2/2865:2869
No text annotation
Not in a motif group
homologous
IL_5J7L_354
IL_83162.5
IL_6VWN_1711/3/17:18,
1/3/65:67
Major groove intercalation
Not in a motif group
homologous
IL_4V9F_101
IL_37497.2
IL_6VWN_1721/3/23:28,
1/3/56:60
No text annotation
Not in a motif group
IL_6VWN_1731/3/28:32,
1/3/50:56
No text annotation
Not in a motif group
IL_6VWN_1741/3/34:38,
1/3/44:48
Symmetric double minor groove platform
Not in a motif group
homologous
IL_5J7L_358
IL_58103.6
IL_6VWN_1751/3/71:79,
1/3/97:105
Bacterial 5S Loop E
Not in a motif group
homologous
IL_5J7L_359
IL_56455.3

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6VWN_0011/1/46:47,
1/1/361:367,
1/1/393:395
No text annotation
Not in a motif group
homologous
J3_5J7L_001
NA
J3_6VWN_0021/1/586:588,
1/1/651:654,
1/1/754:755
No text annotation
Not in a motif group
J3_6VWN_0031/1/672:673,
1/1/717:725,
1/1/732:734
No text annotation
Not in a motif group
J3_6VWN_0041/1/826:829,
1/1/857:861,
1/1/868:874
No text annotation
Not in a motif group
homologous
J3_5J7L_004
NA
J3_6VWN_0051/1/943:946,
1/1/1235:1237,
1/1/1337:1340
No text annotation
Not in a motif group
homologous
J3_4LFB_003
NA
J3_6VWN_0061/1/955:962,
1/1/973:984,
1/1/1221:1225
No text annotation
Not in a motif group
J3_6VWN_0071/1/990:993,
1/1/1045:1047,
1/1/1210:1215
No text annotation
Not in a motif group
J3_6VWN_0081/1/1003:1006,
1/1/1023:1028,
1/1/1033:1037
No text annotation
Not in a motif group
J3_6VWN_0091/1/1063:1068,
1/1/1107:1113,
1/1/1187:1193
No text annotation
Not in a motif group
J3_6VWN_0101/1/1073:1074,
1/1/1083:1087,
1/1/1098:1102
No text annotation
Not in a motif group
homologous
J3_6CZR_024
NA
J3_6VWN_0111/1/1116:1118,
1/1/1155:1158,
1/1/1181:1184
No text annotation
Not in a motif group
J3_6VWN_0121/1/1237:1241,
1/1/1296:1303,
1/1/1334:1337
No text annotation
Not in a motif group
J3_6VWN_0131/2/30:31,
1/2/474:481,
1/2/509:510
No text annotation
Not in a motif group
J3_6VWN_0141/2/56:57,
1/2/70:76,
1/2/110:114
No text annotation
Not in a motif group
homologous
J3_5J7L_037
NA