6YT9 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6YT9_001 | 1/2/14:24 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_6YT9_002 | 1/2/154:159 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_6YT9_003 | 1/2/182:187 | No text annotation Not in a motif group | geometric HL_7RQB_042 HL_03562.2 | |
| HL_6YT9_004 | 1/2/255:263 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
| HL_6YT9_005 | 1/2/292:297 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_6YT9_006 | 1/2/316:329 | No text annotation Not in a motif group | homologous HL_5J7L_008 HL_81205.2 | |
| HL_6YT9_007 | 1/2/338:343 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_6YT9_008 | 1/2/375:380 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_42097.1 | |
| HL_6YT9_009 | 1/2/415:420 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
| HL_6YT9_010 | 1/2/458:466 | No text annotation Not in a motif group | homologous HL_5J7L_012 HL_84085.2 | |
| HL_6YT9_011 | 1/2/519:524 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_6YT9_012 | 1/2/614:620 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26881.1 | |
| HL_6YT9_013 | 1/2/686:695 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_12326.1 | |
| HL_6YT9_014 | 1/2/723:728 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_6YT9_015 | 1/2/783:793 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_12326.1 | |
| HL_6YT9_016 | 1/2/859:864 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_6YT9_017 | 1/2/894:899 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_6YT9_018 | 1/4/1446:1451 | No text annotation Not in a motif group | geometric HL_3OXE_002 HL_42097.1 | |
| HL_6YT9_019 | 1/4/1512:1517 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6YT9_001 | 1/2/32:34, 1/2/549:550 | Single bulged G Not in a motif group | homologous IL_5J7L_001 IL_00225.2 | |
| IL_6YT9_002 | 1/2/46:47, 1/2/392:394 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_37497.2 | |
| IL_6YT9_003 | 1/2/49:54, 1/2/355:357 | No text annotation Not in a motif group | geometric IL_5J7L_003 IL_11178.1 | |
| IL_6YT9_004 | 1/2/56:58, 1/2/352:353 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_6YT9_005 | 1/2/65:68, 1/2/99:100 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_005 IL_76389.1 | |
| IL_6YT9_006 | 1/2/69:71, 1/2/96:98 | No text annotation Not in a motif group | homologous IL_6CZR_118 IL_95997.1 | |
| IL_6YT9_007 | 1/2/73:77, 1/2/90:94 | No text annotation Not in a motif group | ||
| IL_6YT9_008 | 1/2/124:127, 1/2/227:229 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_009 IL_82068.2 | |
| IL_6YT9_009 | 1/2/128:132, 1/2/223:226 | Minor groove platform related Not in a motif group | homologous IL_5J7L_010 IL_58764.3 | |
| IL_6YT9_010 | 1/2/140:143, 1/2/171:174 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_002 IL_30621.2 | |
| IL_6YT9_011 | 1/2/143:149, 1/2/164:171 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_6CZR_121 IL_80604.2 | |
| IL_6YT9_012 | 1/2/238:243, 1/2/273:280 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_6YT9_013 | 1/2/245:248, 1/2/270:271 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
| IL_6YT9_014 | 1/2/288:289, 1/2/300:304 | C-loop Not in a motif group | homologous IL_5J7L_016 IL_37712.2 | |
| IL_6YT9_015 | 1/2/363:365, 1/2/388:389 | Single bulged U Not in a motif group | geometric IL_5J7L_017 IL_83039.13 | |
| IL_6YT9_016 | 1/2/367:371, 1/2/385:386 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_6YT9_017 | 1/2/371:372, 1/2/383:385 | Single bulged G Not in a motif group | homologous IL_5J7L_019 IL_00225.2 | |
| IL_6YT9_018 | 1/2/405:412, 1/2/423:429 | No text annotation Not in a motif group | homologous IL_5J7L_020 IL_28026.1 | |
| IL_6YT9_019 | 1/2/436:438, 1/2/489:494 | No text annotation Not in a motif group | homologous IL_5J7L_021 IL_22248.1 | |
| IL_6YT9_020 | 1/2/442:446, 1/2/480:485 | tSH-tHW-tWW Not in a motif group | geometric IL_5J7L_022 IL_88269.3 | |
| IL_6YT9_021 | 1/2/446:450, 1/2/475:480 | No text annotation Not in a motif group | ||
| IL_6YT9_022 | 1/2/452:453, 1/2/471:473 | Single stack bend Not in a motif group | geometric IL_4WF9_007 IL_76488.2 | |
| IL_6YT9_023 | 1/2/501:508, 1/2/537:538 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
| IL_6YT9_024 | 1/2/512:518, 1/2/525:533 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_6YT9_025 | 1/2/577:581, 1/2/754:758 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_6YT9_026 | 1/2/591:593, 1/2/641:642 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.1 | |
| IL_6YT9_027 | 1/2/594:595, 1/2/637:640 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_6YT9_028 | 1/2/602:609, 1/2/625:630 | No text annotation Not in a motif group | homologous IL_5J7L_030 IL_78349.1 | |
| IL_6YT9_029 | 1/2/656:657, 1/2/742:744 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_76488.2 | |
| IL_6YT9_030 | 1/2/659:663, 1/2/737:740 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
| IL_6YT9_031 | 1/2/670:675, 1/2/709:714 | No text annotation Not in a motif group | geometric IL_4LFB_030 IL_04668.1 | |
| IL_6YT9_032 | 1/2/681:685, 1/2/696:703 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_45067.2 | |
| IL_6YT9_033 | 1/2/771:775, 1/2/801:802 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_6YT9_034 | 1/2/776:780, 1/2/796:800 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_6YT9_035 | 1/2/884:891, 1/2/902:907 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.2 | |
| IL_6YT9_036 | 1/2/919:920, 1/4/1390:1392 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.2 | |
| IL_6YT9_037 | 1/4/1396:1398, 1/4/1498:1501 | No text annotation Not in a motif group | homologous IL_5J7L_058 IL_36143.3 | |
| IL_6YT9_038 | 1/4/1398:1401, 1/4/1494:1498 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_6YT9_039 | 1/4/1402:1404, 1/4/1491:1493 | No text annotation Not in a motif group | geometric IL_5MWI_007 IL_95997.1 | |
| IL_6YT9_040 | 1/4/1404:1406, 1/4/1488:1491 | No text annotation Not in a motif group | geometric IL_6DME_003 IL_63450.2 | |
| IL_6YT9_041 | 1/4/1409:1411, 1/4/1483:1485 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_6YT9_042 | 1/4/1413:1416, 1/4/1478:1481 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_6YT9_043 | 1/4/1418:1420, 1/4/1474:1476 | No text annotation Not in a motif group | geometric IL_2O3Y_004 IL_95997.1 | |
| IL_6YT9_044 | 1/4/1427:1432, 1/4/1463:1467 | Triple sheared related Not in a motif group | homologous IL_5J7L_063 IL_64879.2 | |
| IL_6YT9_045 | 1/4/1437:1439, 1/4/1457:1458 | Single bulged A Not in a motif group | geometric IL_7RQB_048 IL_37497.2 | |
| IL_6YT9_046 | 1/4/1442:1445, 1/4/1452:1454 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.5 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6YT9_001 | 1/2/48:49, 1/2/357:363, 1/2/389:391 | No text annotation Not in a motif group | homologous J3_5J7L_001 NA | |
| J3_6YT9_002 | 1/2/583:585, 1/2/648:652, 1/2/748:752 | No text annotation Not in a motif group | ||
| J3_6YT9_003 | 1/2/669:670, 1/2/714:722, 1/2/729:731 | No text annotation Not in a motif group | homologous J3_5J7L_003 NA | |
| J3_6YT9_004 | 1/2/823:826, 1/2/854:858, 1/2/865:871 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA |
Problematic loops
No problematic loops
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