Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7A1G_0011/2/7:17No text annotation
Not in a motif group
homologous
HL_4V88_186
HL_89881.2
HL_7A1G_0021/2/70:81No text annotation
Not in a motif group
geometric
HL_5TBW_006
HL_98984.2
HL_7A1G_0031/2/154:160Other HL
Not in a motif group
homologous
HL_4V88_188
HL_76539.2
HL_7A1G_0041/2/190:195No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_01057.1
HL_7A1G_0051/2/228:237No text annotation
Not in a motif group
HL_7A1G_0061/2/243:250T-loop with 1 bulged base
Not in a motif group
homologous
HL_4V88_191
HL_27930.1
HL_7A1G_0071/2/276:279No text annotation
Not in a motif group
homologous
HL_4V88_192
HL_53837.1
HL_7A1G_0081/2/330:338No text annotation
Not in a motif group
homologous
HL_4V88_193
HL_69023.2
HL_7A1G_0091/2/368:373No text annotation
Not in a motif group
homologous
HL_4V88_194
HL_50142.2
HL_7A1G_0101/2/393:404No text annotation
Not in a motif group
homologous
HL_4V88_195
HL_84288.1
HL_7A1G_0111/2/414:419UNCG
Not in a motif group
homologous
HL_4V88_196
HL_03562.2
HL_7A1G_0121/2/450:456No text annotation
Not in a motif group
homologous
HL_4V88_197
HL_09136.1
HL_7A1G_0131/2/491:496No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_01057.1
HL_7A1G_0141/2/520:532No text annotation
Not in a motif group
homologous
HL_4V88_199
HL_06285.2
HL_7A1G_0151/2/569:574Other HL
Not in a motif group
homologous
HL_4V88_200
HL_53845.1
HL_7A1G_0161/2/650:684No text annotation
Not in a motif group
HL_7A1G_0171/2/702:736No text annotation
Not in a motif group
HL_7A1G_0181/2/764:772No text annotation
Not in a motif group
homologous
HL_4V88_203
HL_46766.2
HL_7A1G_0191/2/777:783No text annotation
Not in a motif group
homologous
HL_4V88_204
HL_97896.2
HL_7A1G_0201/2/828:844No text annotation
Not in a motif group
homologous
HL_4V88_205
HL_96598.1
HL_7A1G_0211/2/900:909No text annotation
Not in a motif group
homologous
HL_4V88_206
HL_12326.1
HL_7A1G_0221/2/937:942Other HL
Not in a motif group
homologous
HL_4V88_207
HL_87030.2
HL_7A1G_0231/2/997:1007No text annotation
Not in a motif group
homologous
HL_4V88_208
HL_12326.1
HL_7A1G_0241/2/1055:1064No text annotation
Not in a motif group
HL_7A1G_0251/2/1084:1089Other HL
Not in a motif group
homologous
HL_4V88_210
HL_42097.1
HL_7A1G_0261/2/1121:1126GNRA
Not in a motif group
homologous
HL_4V88_211
HL_42097.1
HL_7A1G_0271/2/1188:1197No text annotation
Not in a motif group
homologous
HL_4V88_212
HL_73530.2
HL_7A1G_0281/2/1238:1247No text annotation
Not in a motif group
homologous
HL_4V88_213
HL_53597.2
HL_7A1G_0291/2/1296:1301GNRA
Not in a motif group
homologous
HL_4V88_214
HL_42097.1
HL_7A1G_0301/2/1309:1316No text annotation
Not in a motif group
homologous
HL_4V88_215
HL_71554.2
HL_7A1G_0311/2/1359:1364No text annotation
Not in a motif group
homologous
HL_4V88_216
HL_10278.1
HL_7A1G_0321/2/1396:1402No text annotation
Not in a motif group
homologous
HL_4V88_217
HL_42097.1
HL_7A1G_0331/2/1501:1506GNRA
Not in a motif group
homologous
HL_4V88_218
HL_42097.1
HL_7A1G_0341/2/1550:1561No text annotation
Not in a motif group
homologous
HL_4V88_219
HL_22554.1
HL_7A1G_0351/2/1594:1602No text annotation
Not in a motif group
homologous
HL_4V88_220
HL_60812.1
HL_7A1G_0361/2/1698:1703No text annotation
Not in a motif group
geometric
HL_4O26_001
HL_56691.2
HL_7A1G_0371/2/1778:1783Other HL
Not in a motif group
homologous
HL_4V88_222
HL_16173.1

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7A1G_0011/2/24:26,
1/2/600:601
Single bulged C
Not in a motif group
homologous
IL_4V88_384
IL_61258.12
IL_7A1G_0021/2/35:37,
1/2/471:473
UC cWW
Not in a motif group
geometric
IL_4V88_385
IL_51629.2
IL_7A1G_0031/2/37:41,
1/2/466:471
No text annotation
Not in a motif group
homologous
IL_4V88_386
IL_41507.1
IL_7A1G_0041/2/42:48,
1/2/431:433
No text annotation
Not in a motif group
homologous
IL_4V88_387
IL_33912.1
IL_7A1G_0051/2/50:52,
1/2/428:429
Minor groove platform
Not in a motif group
homologous
IL_4V88_388
IL_93353.1
IL_7A1G_0061/2/58:63,
1/2/87:89
No text annotation
Not in a motif group
homologous
IL_4V88_389
IL_95004.1
IL_7A1G_0071/2/64:69,
1/2/82:86
No text annotation
Not in a motif group
homologous
IL_4V88_390
IL_77691.1
IL_7A1G_0081/2/109:112,
1/2/302:305
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_391
IL_30621.2
IL_7A1G_0091/2/113:116,
1/2/300:301
Multiple bulged bases
Not in a motif group
homologous
IL_4V88_392
IL_44546.1
IL_7A1G_0101/2/117:122,
1/2/295:299
No text annotation
Not in a motif group
homologous
IL_4V88_393
IL_64181.2
IL_7A1G_0111/2/144:149,
1/2/165:171
tWH-tWH-tHW-tHW
Not in a motif group
geometric
IL_4LFB_009
IL_39753.1
IL_7A1G_0121/2/150:152,
1/2/162:164
Isolated cWH basepair
Not in a motif group
geometric
IL_6RA4_002
IL_51629.2
IL_7A1G_0131/2/186:189,
1/2/196:199
Double sheared
Not in a motif group
homologous
IL_4V88_396
IL_09705.9
IL_7A1G_0141/2/204:206,
1/2/259:263
Major groove platform with extra cWW
Not in a motif group
homologous
IL_4V88_397
IL_05564.2
IL_7A1G_0151/2/206:208,
1/2/257:259
No text annotation
Not in a motif group
geometric
IL_3U4M_001
IL_95997.1
IL_7A1G_0161/2/265:267,
1/2/288:289
Single bulged A
Not in a motif group
homologous
IL_4V88_399
IL_37497.2
IL_7A1G_0171/2/270:274,
1/2/282:285
No text annotation
Not in a motif group
IL_7A1G_0181/2/275:276,
1/2/279:281
Single bulged U
Not in a motif group
geometric
IL_4V88_401
IL_83039.13
IL_7A1G_0191/2/311:316,
1/2/348:355
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4V88_402
IL_45067.2
IL_7A1G_0201/2/318:323,
1/2/345:346
No text annotation
Not in a motif group
geometric
IL_5Y58_001
IL_48100.2
IL_7A1G_0211/2/363:365,
1/2/376:381
No text annotation
Not in a motif group
homologous
IL_4V88_404
IL_11347.1
IL_7A1G_0221/2/389:391,
1/2/406:408
Isolated cWH basepair
Not in a motif group
homologous
IL_4V88_405
IL_51629.2
IL_7A1G_0231/2/411:413,
1/2/420:422
Isolated near basepair
Not in a motif group
homologous
IL_4V88_406
IL_52767.2
IL_7A1G_0241/2/439:441,
1/2/463:464
Single bulged U
Not in a motif group
homologous
IL_4V88_407
IL_83039.13
IL_7A1G_0251/2/443:447,
1/2/460:461
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_7A1G_0261/2/447:448,
1/2/458:460
Single bulged G
Not in a motif group
geometric
IL_5J7L_019
IL_00225.2
IL_7A1G_0271/2/481:482,
1/2/505:507
Single bulged A
Not in a motif group
homologous
IL_4V88_409
IL_37497.2
IL_7A1G_0281/2/485:488,
1/2/500:502
No text annotation
Not in a motif group
IL_7A1G_0291/2/488:489,
1/2/498:500
No text annotation
Not in a motif group
IL_7A1G_0301/2/514:516,
1/2/536:543
No text annotation
Not in a motif group
IL_7A1G_0311/2/517:518,
1/2/533:535
Minor groove platform
Not in a motif group
geometric
IL_4V88_388
IL_93353.1
IL_7A1G_0321/2/518:520,
1/2/532:533
Minor groove platform
Not in a motif group
geometric
IL_4V88_412
IL_93353.1
IL_7A1G_0331/2/550:557,
1/2/587:588
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4V88_413
IL_15861.7
IL_7A1G_0341/2/557:559,
1/2/586:587
Single bulged U
Not in a motif group
geometric
IL_4WF9_030
IL_83039.13
IL_7A1G_0351/2/562:568,
1/2/575:583
No text annotation
Not in a motif group
homologous
IL_4V88_415
IL_55871.1
IL_7A1G_0361/2/616:622,
1/2/1104:1105
No text annotation
Not in a motif group
homologous
IL_4V88_416
IL_69996.1
IL_7A1G_0371/2/624:626,
1/2/973:975
No text annotation
Not in a motif group
homologous
IL_4V88_417
IL_95997.1
IL_7A1G_0381/2/627:631,
1/2/968:972
tSH-tHW-tHS
Not in a motif group
homologous
IL_4V88_418
IL_17136.1
IL_7A1G_0391/2/646:648,
1/2/686:688
No text annotation
Not in a motif group
geometric
IL_4V88_419
IL_95997.1
IL_7A1G_0401/2/746:747,
1/2/802:805
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4V88_423
IL_09061.6
IL_7A1G_0411/2/748:750,
1/2/799:801
No text annotation
Not in a motif group
homologous
IL_4V88_424
IL_95997.1
IL_7A1G_0421/2/751:759,
1/2/791:798
No text annotation
Not in a motif group
homologous
IL_4V88_425
IL_69091.1
IL_7A1G_0431/2/817:822,
1/2/850:854
No text annotation
Not in a motif group
IL_7A1G_0441/2/822:824,
1/2/848:850
No text annotation
Not in a motif group
geometric
IL_7A0S_031
IL_95997.1
IL_7A1G_0451/2/865:866,
1/2/962:965
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4V88_428
IL_50694.2
IL_7A1G_0461/2/867:870,
1/2/957:961
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_429
IL_30621.2
IL_7A1G_0471/2/871:874,
1/2/953:956
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_430
IL_30621.2
IL_7A1G_0481/2/874:878,
1/2/950:953
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_431
IL_30621.2
IL_7A1G_0491/2/885:888,
1/2/924:927
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_432
IL_30621.2
IL_7A1G_0501/2/893:899,
1/2/910:919
No text annotation
Not in a motif group
homologous
IL_8C3A_440
IL_22252.1
IL_7A1G_0511/2/985:990,
1/2/1014:1016
Other IL
Not in a motif group
homologous
IL_4V88_435
IL_22046.1
IL_7A1G_0521/2/990:994,
1/2/1010:1014
tSH-tHW-tHS
Not in a motif group
geometric
IL_4V88_436
IL_17136.1
IL_7A1G_0531/2/1034:1036,
1/2/1095:1101
No text annotation
Not in a motif group
homologous
IL_4V88_437
IL_19557.3
IL_7A1G_0541/2/1041:1044,
1/2/1074:1077
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_438
IL_30621.2
IL_7A1G_0551/2/1051:1053,
1/2/1066:1067
Single bulged U
Not in a motif group
homologous
IL_4V88_439
IL_83039.13
IL_7A1G_0561/2/1111:1118,
1/2/1129:1134
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4V88_440
IL_24606.2
IL_7A1G_0571/2/1146:1147,
1/2/1630:1632
Single bulged A
Not in a motif group
homologous
IL_4V88_441
IL_37497.2
IL_7A1G_0581/2/1149:1151,
1/2/1627:1628
Single bulged G
Not in a motif group
homologous
IL_4V88_442
IL_00225.2
IL_7A1G_0591/2/1157:1160,
1/2/1617:1621
C-loop
Not in a motif group
homologous
IL_4V88_443
IL_63596.6
IL_7A1G_0601/2/1173:1175,
1/2/1464:1466
No text annotation
Not in a motif group
homologous
IL_4V88_444
IL_95997.1
IL_7A1G_0611/2/1178:1179,
1/2/1459:1461
Minor groove platform
Not in a motif group
homologous
IL_4V88_445
IL_42622.2
IL_7A1G_0621/2/1213:1215,
1/2/1448:1450
CC cWW
Not in a motif group
geometric
IL_4E59_001
IL_95997.1
IL_7A1G_0631/2/1224:1230,
1/2/1257:1259
No text annotation
Not in a motif group
IL_7A1G_0641/2/1230:1233,
1/2/1252:1257
No text annotation
Not in a motif group
IL_7A1G_0651/2/1234:1236,
1/2/1249:1251
No text annotation
Not in a motif group
homologous
IL_4V88_448
IL_10023.1
IL_7A1G_0661/2/1268:1270,
1/2/1440:1441
Single bulged U
Not in a motif group
homologous
IL_4V88_449
IL_83039.13
IL_7A1G_0671/2/1272:1276,
1/2/1436:1438
Isolated cWS basepair
Not in a motif group
geometric
IL_4LFB_044
IL_76319.2
IL_7A1G_0681/2/1276:1278,
1/2/1430:1436
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_4V88_451
IL_92788.2
IL_7A1G_0691/2/1280:1281,
1/2/1426:1428
Single bulged A
Not in a motif group
homologous
IL_4V88_452
IL_37497.2
IL_7A1G_0701/2/1290:1292,
1/2/1323:1325
Isolated cWH basepair
Not in a motif group
homologous
IL_4V88_453
IL_51629.2
IL_7A1G_0711/2/1306:1308,
1/2/1317:1318
Minor groove platform
Not in a motif group
geometric
IL_5T83_003
IL_42622.2
IL_7A1G_0721/2/1339:1342,
1/2/1383:1385
No text annotation
Not in a motif group
homologous
IL_4V88_455
IL_10023.1
IL_7A1G_0731/2/1345:1348,
1/2/1377:1380
Minor groove platform
Not in a motif group
homologous
IL_4V88_456
IL_76458.1
IL_7A1G_0741/2/1352:1355,
1/2/1368:1373
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_205D_001
IL_30621.2
IL_7A1G_0751/2/1389:1391,
1/2/1407:1412
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_4V88_458
IL_58032.1
IL_7A1G_0761/2/1480:1487,
1/2/1519:1527
No text annotation
Not in a motif group
homologous
IL_4V88_459
IL_10447.1
IL_7A1G_0771/2/1488:1494,
1/2/1513:1518
No text annotation
Not in a motif group
homologous
IL_4V88_460
IL_75461.4
IL_7A1G_0781/2/1495:1498,
1/2/1509:1512
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_461
IL_30621.2
IL_7A1G_0791/2/1540:1545,
1/2/1566:1571
No text annotation
Not in a motif group
geometric
IL_4V88_462
IL_19954.2
IL_7A1G_0801/2/1636:1638,
1/2/1764:1767
No text annotation
Not in a motif group
geometric
IL_4V88_463
IL_36143.3
IL_7A1G_0811/2/1638:1642,
1/2/1759:1764
No text annotation
Not in a motif group
IL_7A1G_0821/2/1642:1644,
1/2/1757:1759
UU cWW
Not in a motif group
geometric
IL_4E48_006
IL_95997.1
IL_7A1G_0831/2/1644:1647,
1/2/1753:1757
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4EYA_010
IL_30621.2
IL_7A1G_0841/2/1650:1652,
1/2/1748:1750
AA cWW
Not in a motif group
homologous
IL_4V88_467
IL_95997.1
IL_7A1G_0851/2/1653:1656,
1/2/1744:1747
Double sheared
Not in a motif group
geometric
IL_4V88_468
IL_09705.9
IL_7A1G_0861/2/1656:1659,
1/2/1742:1744
Decoding loop related
Not in a motif group
geometric
IL_3C3Z_002
IL_64417.1
IL_7A1G_0871/2/1665:1667,
1/2/1734:1736
No text annotation
Not in a motif group
homologous
IL_4V88_470
IL_51629.2
IL_7A1G_0881/2/1669:1672,
1/2/1729:1732
Double sheared
Not in a motif group
geometric
IL_4V88_471
IL_09705.9
IL_7A1G_0891/2/1672:1674,
1/2/1727:1729
No text annotation
Not in a motif group
homologous
IL_4V88_472
IL_95997.1
IL_7A1G_0901/2/1675:1678,
1/2/1723:1726
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_473
IL_30621.2
IL_7A1G_0911/2/1678:1682,
1/2/1719:1723
Triple sheared
Not in a motif group
geometric
IL_4V88_474
IL_56467.8
IL_7A1G_0921/2/1687:1690,
1/2/1711:1714
No text annotation
Not in a motif group
IL_7A1G_0931/2/1692:1695,
1/2/1706:1709
No text annotation
Not in a motif group

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7A1G_0011/2/41:42,
1/2/433:439,
1/2/464:466
No text annotation
Not in a motif group
J3_7A1G_0021/2/633:635,
1/2/861:865,
1/2/965:966
No text annotation
Not in a motif group
J3_7A1G_0031/2/760:763,
1/2/773:775,
1/2/785:790
No text annotation
Not in a motif group
homologous
J3_4V88_032
NA
J3_7A1G_0041/2/881:884,
1/2/928:936,
1/2/943:947
No text annotation
Not in a motif group
homologous
J3_4V88_033
NA
J3_7A1G_0051/2/1037:1039,
1/2/1079:1083,
1/2/1090:1094
No text annotation
Not in a motif group
homologous
J3_4V88_034
NA
J3_7A1G_0061/2/1161:1164,
1/2/1581:1587,
1/2/1609:1616
No text annotation
Not in a motif group
homologous
J3_4V88_035
NA
J3_7A1G_0071/2/1168:1171,
1/2/1468:1470,
1/2/1574:1577
No text annotation
Not in a motif group
homologous
J3_8C3A_039
NA
J3_7A1G_0081/2/1180:1187,
1/2/1198:1209,
1/2/1454:1458
No text annotation
Not in a motif group
J3_7A1G_0091/2/1215:1220,
1/2/1263:1267,
1/2/1442:1448
No text annotation
Not in a motif group
homologous
J3_4V88_038
NA
J3_7A1G_0101/2/1283:1288,
1/2/1327:1332,
1/2/1419:1424
No text annotation
Not in a motif group
J3_7A1G_0111/2/1293:1294,
1/2/1303:1306,
1/2/1318:1322
No text annotation
Not in a motif group
J3_7A1G_0121/2/1336:1338,
1/2/1386:1389,
1/2/1412:1415
No text annotation
Not in a motif group
homologous
J3_4V88_040
NA
J3_7A1G_0131/2/1470:1474,
1/2/1533:1540,
1/2/1571:1574
No text annotation
Not in a motif group
homologous
J3_4V88_041
NA

Problematic loops

No problematic loops


Coloring options:
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