Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/C/31:47NANA
1/C/79:92NANA
1/X/12:24NANA
1/X/64:103NANA
1/X/158:163NANA
1/X/267:275NANA
1/X/304:309NANA
1/X/330:340NANA
1/X/387:392NANA
1/X/529:536NANA
1/X/624:632NANA
1/X/690:718NANA
1/X/794:804NANA
1/X/871:878NANA
1/X/906:913NANA
1/X/973:982NANA
1/X/1008:1055NANA
1/X/1088:1093NANA
1/X/1100:1109NANA
1/X/1175:1183NANA
1/X/1320:1339NANA
1/X/1367:1377NANA
1/X/1455:1470NANA
1/X/1527:1532NANA
1/Y/67:74
geometric
HL_4WF9_001
NA

HL_86769.2*
1/Y/87:95
homologous
HL_7RQB_002
NA

HL_17926.5*
1/Y/122:127
homologous
HL_7RQB_003
NA

HL_62869.3*
1/Y/135:144NANA
1/Y/152:177NANA
1/Y/197:204
homologous
HL_7RQB_006
NA

HL_23481.5*
1/Y/228:233NANA
1/Y/249:255
homologous
HL_7RQB_008
NA

HL_67216.5*
1/Y/278:293NANA
1/Y/348:355
homologous
HL_7RQB_010
NA

HL_68493.6*
1/Y/370:378
homologous
HL_7RQB_012
NA

HL_08002.6*
1/Y/427:439NANA
1/Y/456:463
homologous
HL_7RQB_014
NA

HL_32512.8*
1/Y/508:513
homologous
HL_7RQB_015
NA

HL_43074.18*
1/Y/533:538
homologous
HL_7RQB_016
NA

HL_43074.18*
1/Y/587:594
geometric
HL_4WF9_017
NA

HL_23219.1*
1/Y/609:618
homologous
HL_7RQB_018
NA

HL_33239.17*
1/Y/654:662NANA
1/Y/674:679
homologous
HL_7RQB_020
NA

HL_43074.18*
1/Y/686:692NANA
1/Y/747:775NANA
1/Y/789:798
homologous
HL_7RQB_023
NA

HL_39334.5*
1/Y/823:831NANA
1/Y/871:876
homologous
HL_7RQB_025
NA

HL_15942.5*
1/Y/919:948NANA
1/Y/998:1007
geometric
HL_3RG5_006
NA

HL_83315.1*
1/Y/1022:1029
homologous
HL_7RQB_028
NA

HL_72451.5*
1/Y/1083:1160NANA
1/Y/1211:1221NANA
1/Y/1260:1265
homologous
HL_7RQB_032
NA

HL_43074.18*
1/Y/1318:1326
homologous
HL_7RQB_033
NA

HL_33239.17*
1/Y/1361:1367
homologous
HL_7RQB_034
NA

HL_86880.5*
1/Y/1400:1405
homologous
HL_7RQB_035
NA

HL_43074.18*
1/Y/1426:1435
homologous
HL_7RQB_036
NA

HL_78457.4*
1/Y/1511:1570NANA
1/Y/1612:1615
homologous
HL_7RQB_039
NA

HL_69353.7*
1/Y/1656:1663
homologous
HL_7RQB_040
NA

HL_66171.3*
1/Y/1673:1681
geometric
HL_4WF9_039
NA

HL_42733.4*
1/Y/1735:1740UNCG
geometric
HL_4LFB_009
NA

HL_79299.11*
1/Y/1756:1773NANA
1/Y/1779:1783
homologous
HL_7RQB_044
NA

HL_79272.3*
1/Y/1804:1814
homologous
HL_7RQB_045
NA

HL_43613.4*
1/Y/1833:1838
homologous
HL_7RQB_046
NA

HL_43074.18*
1/Y/1894:1901NANA
1/Y/1976:1984
homologous
HL_7RQB_049
NA

HL_53760.4*
1/Y/2054:2063
homologous
HL_7RQB_050
NA

HL_90642.5*
1/Y/2134:2209NANA
1/Y/2236:2242NANA
1/Y/2275:2283
homologous
HL_7RQB_053
NA
1/Y/2291:2303
homologous
HL_7RQB_054
NA

HL_19870.5*
1/Y/2350:2359NANA
1/Y/2382:2389
homologous
HL_7RQB_057
NA

HL_93727.5*
1/Y/2401:2406
homologous
HL_7RQB_058
NA

HL_43074.18*
1/Y/2431:2440
homologous
HL_7RQB_059
NA

HL_48376.4*
1/Y/2497:2507NANA
1/Y/2554:2563NANA
1/Y/2578:2584NANA
1/Y/2621:2626
homologous
HL_7RQB_063
NA

HL_43074.18*
1/Y/2679:2695NANA
1/Y/2727:2734
geometric
HL_5TBW_012
NA

HL_94386.1*
1/Y/2772:2786NANA
1/Y/2839:2847
homologous
HL_7RQB_068
NA

HL_05018.6*
1/Y/2876:2881
homologous
HL_7RQB_069
NA

HL_43074.18*

Problematic loops

#loop idProblemSequence
HL_7ASO_014NA
HL_7ASO_076NA

Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/C/3:5,
1/C/110:112
NANA
1/X/29:34,
1/X/559:564
NANA
1/X/48:54,
1/X/366:369
NANA
1/X/125:127,
1/X/241:243
NANA
1/X/127:132,
1/X/239:241
NANA
1/X/132:137,
1/X/234:239
NANA
1/X/138:144,
1/X/178:233
NANA
1/X/297:303,
1/X/311:319
NANA
1/X/303:304,
1/X/309:311
NANA
1/X/327:330,
1/X/340:342
NANA
1/X/378:383,
1/X/397:399
NANA
1/X/383:384,
1/X/395:397
NANA
1/X/510:520,
1/X/547:552
NANA
1/X/522:529,
1/X/536:545
NANA
1/X/599:607,
1/X/647:656
NANA
1/X/607:610,
1/X/645:647
NANA
1/X/662:667,
1/X/754:762
NANA
1/X/669:674,
1/X/748:752
NANA
1/X/679:681,
1/X/725:743
NANA
1/X/681:690,
1/X/718:725
NANA
1/X/787:791,
1/X/807:811
NANA
1/X/897:906,
1/X/913:920
NANA
1/X/1314:1320,
1/X/1339:1345
NANA
1/X/1440:1442,
1/X/1482:1483
NANA
1/X/1442:1446,
1/X/1478:1482
NANA
1/X/1446:1448,
1/X/1476:1478
NANA
1/X/1449:1454,
1/X/1471:1475
NANA
1/X/1524:1527,
1/X/1532:1535
NANA
1/Y/4:7,
1/Y/2915:2918
Tandem non-canonical cWW pairs
geometric
IL_1L9A_005
NA

IL_85877.10*
1/Y/24:30,
1/Y/555:561
Triple sheared with non-canonical cWW
geometric
IL_4WF9_001
NA

IL_66414.5*
1/Y/36:37,
1/Y/488:490
Single bulged A
homologous
IL_7RQB_002
NA

IL_80007.16*
1/Y/42:44,
1/Y/480:483
Minor groove platform with extra cWW
geometric
IL_4WF9_003
NA

IL_87332.1*
1/Y/80:85,
1/Y/97:105

geometric
IL_6CZR_143
NA

IL_37722.1*
1/Y/186:187,
1/Y/215:217
NANA
1/Y/190:197,
1/Y/204:212
9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
NA

IL_61812.1*
1/Y/241:248,
1/Y/256:262
8x7 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_009
NA

IL_04346.5*
1/Y/304:308,
1/Y/407:413
NANA
1/Y/336:338,
1/Y/386:390
NANA
1/Y/527:530,
1/Y/541:554

geometric
IL_4WF9_015
NA

IL_60992.5*
1/Y/581:584,
1/Y/597:600
Double sheared
geometric
IL_4WF9_016
NA

IL_09705.7*
1/Y/607:609,
1/Y/618:620

geometric
IL_4WF9_017
NA

IL_01312.13*
1/Y/638:640,
1/Y/705:707

geometric
IL_2O3V_004
NA

IL_01312.13*
1/Y/649:653,
1/Y/663:667
AAA cross-strand stack
homologous
IL_7RQB_016
NA

IL_56467.6*
1/Y/717:719,
1/Y/851:853

geometric
IL_7RQB_017
NA

IL_01312.13*
1/Y/719:723,
1/Y/844:851

homologous
IL_7RQB_018
NA

IL_17470.5*
1/Y/742:743,
1/Y/808:810
Single bulged A
homologous
IL_7RQB_019
NA

IL_80007.16*
1/Y/783:785,
1/Y/802:803
Major groove platform
geometric
IL_5J7L_264
NA

IL_80663.10*
1/Y/820:822,
1/Y/832:836
Multiple bulged bases
homologous
IL_7RQB_023
NA

IL_90991.5*
1/Y/882:883,
1/Y/984:986
Single stack bend
homologous
IL_7RQB_024
NA

IL_04038.4*
1/Y/889:893,
1/Y/975:978

geometric
IL_4WF9_029
NA

IL_06300.1*
1/Y/897:898,
1/Y/969:971
Single bulged U
geometric
IL_2A64_002
NA

IL_83039.11*
1/Y/901:907,
1/Y/960:966
7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_4WF9_031
NA

IL_93830.2*
1/Y/907:908,
1/Y/958:960
Minor groove platform
geometric
IL_7RQB_028
NA

IL_06437.11*
1/Y/909:913,
1/Y/954:957
C-loop
homologous
IL_7RQB_029
NA

IL_63596.4*
1/Y/1038:1040,
1/Y/1203:1204
Single bulged C
homologous
IL_7RQB_035
NA

IL_61258.10*
1/Y/1042:1046,
1/Y/1197:1201
UAA/GAN
homologous
IL_7RQB_036
NA

IL_53523.5*
1/Y/1048:1055,
1/Y/1194:1195
SSU/LSU pseudoknot
geometric
IL_7A0S_034
NA

IL_15861.6*
1/Y/1055:1057,
1/Y/1193:1194
Single bulged U
homologous
IL_7RQB_038
NA

IL_83039.11*
1/Y/1062:1068,
1/Y/1184:1188

homologous
IL_7RQB_039
NA

IL_57188.3*
1/Y/1068:1074,
1/Y/1168:1184

geometric
IL_4WF9_040
NA

IL_22615.1*
1/Y/1075:1078,
1/Y/1165:1167
Isolated non-canonical cWW with bulges
homologous
IL_7RQB_041
NA

IL_55456.1*
1/Y/1081:1083,
1/Y/1160:1162

geometric
IL_4WF9_042
NA

IL_01312.13*
1/Y/1235:1237,
1/Y/1285:1288
Isolated cWS basepair
homologous
IL_7RQB_045
NA

IL_67621.5*
1/Y/1243:1245,
1/Y/1277:1279
Isolated cWH basepair
geometric
IL_4WF9_045
NA

IL_42589.6*
1/Y/1246:1253,
1/Y/1272:1276
Kink-turn
homologous
IL_7RQB_047
NA

IL_29549.9*
1/Y/1257:1259,
1/Y/1266:1268
Intercalated cWW
geometric
IL_4WF9_047
NA

IL_04038.4*
1/Y/1300:1307,
1/Y/2038:2044
8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_049
NA

IL_04346.5*
1/Y/1356:1360,
1/Y/1368:1370
NANA
1/Y/1388:1392,
1/Y/1413:1417
UAA/GAN
geometric
IL_4WF9_051
NA

IL_34907.2*
1/Y/1394:1398,
1/Y/1407:1411
tSH-tHW-tHS
homologous
IL_7RQB_053
NA

IL_39521.5*
1/Y/1695:1700,
1/Y/2031:2033

homologous
IL_7RQB_064
NA

IL_12566.2*
1/Y/1707:1709,
1/Y/2022:2024
Isolated tWW turn
homologous
IL_7RQB_065
NA

IL_54997.5*
1/Y/1710:1713,
1/Y/2020:2021
Major groove platform; stack outside cWW
geometric
IL_4WF9_064
NA

IL_70995.6*
1/Y/1713:1718,
1/Y/2017:2020
Intercalated tWH
homologous
IL_7RQB_067
NA

IL_01312.13*
1/Y/1730:1735,
1/Y/1740:1746
tSH-tSH-tHH-tHS
homologous
IL_7RQB_068
NA

IL_66584.5*
1/Y/1797:1798,
1/Y/2007:2009
Single bulged A
homologous
IL_7RQB_069
NA

IL_80007.16*
1/Y/1825:1831,
1/Y/1840:1848
Kink-turn related
homologous
IL_7RQB_070
NA

IL_17069.3*
1/Y/1864:1867,
1/Y/1929:1930
Major groove outside cWW, minor groove, intercalation pocket
homologous
IL_7RQB_071
NA

IL_31836.1*
1/Y/1868:1869,
1/Y/1925:1928
Major groove outside cWW, minor groove, intercalation pocket
geometric
IL_4WF9_071
NA

IL_13730.12*
1/Y/1873:1876,
1/Y/1920:1921
NANA
1/Y/1877:1883,
1/Y/1913:1919
NANA
1/Y/1960:1961,
1/Y/1991:1994

geometric
IL_4V9F_070
NA

IL_69632.1*
1/Y/1961:1972,
1/Y/1988:1991

geometric
IL_7A0S_072
NA

IL_07097.1*
1/Y/2077:2079,
1/Y/2644:2645
Major groove platform
homologous
IL_7RQB_078
NA

IL_80663.10*
1/Y/2081:2083,
1/Y/2639:2642

geometric
IL_5J7L_321
NA

IL_54678.3*
1/Y/2094:2096,
1/Y/2469:2470
Single bulged U
homologous
IL_7RQB_080
NA

IL_83039.11*
1/Y/2097:2098,
1/Y/2465:2468
Minor groove platform
homologous
IL_7RQB_081
NA

IL_06437.11*
1/Y/2108:2110,
1/Y/2263:2266
Isolated tHS basepair with bulges
homologous
IL_7RQB_082
NA

IL_38958.6*
1/Y/2111:2113,
1/Y/2260:2262

homologous
IL_7RQB_083
NA

IL_01312.13*
1/Y/2123:2126,
1/Y/2217:2220
Tandem non-canonical cWW pairs
geometric
IL_1D4R_001
NA

IL_85877.10*
1/Y/2126:2128,
1/Y/2215:2217
NANA
1/Y/2229:2236,
1/Y/2242:2248
NANA
1/Y/2324:2328,
1/Y/2342:2348
NANA
1/Y/2377:2380,
1/Y/2391:2394
Double sheared
homologous
IL_7RQB_089
NA

IL_09705.7*
1/Y/2426:2431,
1/Y/2440:2444
NANA
1/Y/2480:2481,
1/Y/2525:2527
Single stack bend
homologous
IL_7RQB_091
NA

IL_04038.4*
1/Y/2481:2482,
1/Y/2523:2525
Major groove platform
geometric
IL_4V9F_082
NA

IL_80663.10*
1/Y/2484:2486,
1/Y/2520:2521
Major groove platform
geometric
IL_7A0S_085
NA

IL_80663.10*
1/Y/2486:2488,
1/Y/2516:2520
Major groove minor groove platform with extra cWW
geometric
IL_7RQB_094
NA

IL_96042.4*
1/Y/2493:2497,
1/Y/2507:2511
Triple sheared
geometric
IL_4V9F_085
NA

IL_56467.6*
1/Y/2534:2536,
1/Y/2606:2609
Major groove platform with extra pair
geometric
IL_7RQB_093
NA

IL_87630.5*
1/Y/2537:2539,
1/Y/2601:2605
Isolated non-canonical cWW with bulges
homologous
IL_7RQB_097
NA

IL_01312.13*
1/Y/2539:2540,
1/Y/2598:2601

geometric
IL_4WF9_096
NA

IL_69632.1*
1/Y/2548:2552,
1/Y/2565:2571
NANA
1/Y/2618:2619,
1/Y/2628:2630
Major groove platform
geometric
IL_4LFB_028
NA

IL_80663.10*
1/Y/2663:2667,
1/Y/2801:2809
tSH-tHS-tHW
homologous
IL_7RQB_102
NA

IL_34907.2*
1/Y/2707:2711,
1/Y/2752:2754
C-loop
homologous
IL_7RQB_104
NA

IL_63596.4*
1/Y/2714:2718,
1/Y/2745:2749

homologous
IL_7RQB_105
NA

IL_08296.3*
1/Y/2722:2723,
1/Y/2738:2741
Multiple bulged bases
homologous
IL_7RQB_106
NA

IL_77034.1*
1/Y/2764:2770,
1/Y/2788:2794
NANA
1/Y/2858:2859,
1/Y/2898:2900
Single bulged C
homologous
IL_7RQB_108
NA

IL_61258.10*
1/Y/2863:2865,
1/Y/2891:2894

geometric
IL_4WF9_107
NA

IL_02284.3*
1/Y/2867:2872,
1/Y/2885:2889

homologous
IL_7RQB_110
NA

IL_83162.3*

Problematic loops

No problematic loops

Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/X/45:48,
1/X/369:378,
1/X/399:406
NANA
1/X/833:838,
1/X/866:871,
1/X/878:885
NANA
1/X/1000:1008,
1/X/1055:1059,
1/X/1221:1226
NANA
1/X/1084:1087,
1/X/1094:1100,
1/X/1109:1115
NANA
1/Y/30:31,
1/Y/520:527,
1/Y/554:555

homologous
J3_7RQB_001
NA
1/Y/56:67,
1/Y/74:76,
1/Y/109:113
NANA
1/Y/272:276,
1/Y/295:302,
1/Y/415:416

homologous
J3_7RQB_003
NA
1/Y/728:734,
1/Y/818:820,
1/Y/836:839
NANA
1/Y/743:745,
1/Y/777:781,
1/Y/805:808
NANA
1/Y/1335:1340,
1/Y/1669:1671,
1/Y/1683:1686

homologous
J3_7RQB_007
NA
1/Y/1343:1346,
1/Y/1649:1655,
1/Y/1664:1666

homologous
J3_7RQB_008
NA
1/Y/1860:1863,
1/Y/1931:1960,
1/Y/1994:1999
NANA
1/Y/2118:2120,
1/Y/2223:2229,
1/Y/2248:2255
NANA
1/Y/2322:2324,
1/Y/2348:2350,
1/Y/2359:2364
NANA
1/Y/2544:2547,
1/Y/2572:2574,
1/Y/2588:2594

homologous
J3_7RQB_012
NA
1/Y/2834:2835,
1/Y/2851:2856,
1/Y/2902:2906
NANA

Problematic loops

#loop idProblemSequence
J3_7ASO_001NA

Coloring options:
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