7ASO Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/C/31:47 | NA | NA | ||
1/C/79:92 | NA | NA | ||
1/X/12:24 | NA | NA | ||
1/X/64:103 | NA | NA | ||
1/X/158:163 | NA | NA | ||
1/X/267:275 | NA | NA | ||
1/X/304:309 | NA | NA | ||
1/X/330:340 | NA | NA | ||
1/X/387:392 | NA | NA | ||
1/X/529:536 | NA | NA | ||
1/X/624:632 | NA | NA | ||
1/X/690:718 | NA | NA | ||
1/X/794:804 | NA | NA | ||
1/X/871:878 | NA | NA | ||
1/X/906:913 | NA | NA | ||
1/X/973:982 | NA | NA | ||
1/X/1008:1055 | NA | NA | ||
1/X/1088:1093 | NA | NA | ||
1/X/1100:1109 | NA | NA | ||
1/X/1175:1183 | NA | NA | ||
1/X/1320:1339 | NA | NA | ||
1/X/1367:1377 | NA | NA | ||
1/X/1455:1470 | NA | NA | ||
1/X/1527:1532 | NA | NA | ||
1/Y/67:74 | geometric HL_4WF9_001 | NA HL_86769.2* | ||
1/Y/87:95 | homologous HL_7RQB_002 | NA HL_17926.5* | ||
1/Y/122:127 | homologous HL_7RQB_003 | NA HL_62869.3* | ||
1/Y/135:144 | NA | NA | ||
1/Y/152:177 | NA | NA | ||
1/Y/197:204 | homologous HL_7RQB_006 | NA HL_23481.5* | ||
1/Y/228:233 | NA | NA | ||
1/Y/249:255 | homologous HL_7RQB_008 | NA HL_67216.5* | ||
1/Y/278:293 | NA | NA | ||
1/Y/348:355 | homologous HL_7RQB_010 | NA HL_68493.6* | ||
1/Y/370:378 | homologous HL_7RQB_012 | NA HL_08002.6* | ||
1/Y/427:439 | NA | NA | ||
1/Y/456:463 | homologous HL_7RQB_014 | NA HL_32512.8* | ||
1/Y/508:513 | homologous HL_7RQB_015 | NA HL_43074.18* | ||
1/Y/533:538 | homologous HL_7RQB_016 | NA HL_43074.18* | ||
1/Y/587:594 | geometric HL_4WF9_017 | NA HL_23219.1* | ||
1/Y/609:618 | homologous HL_7RQB_018 | NA HL_33239.17* | ||
1/Y/654:662 | NA | NA | ||
1/Y/674:679 | homologous HL_7RQB_020 | NA HL_43074.18* | ||
1/Y/686:692 | NA | NA | ||
1/Y/747:775 | NA | NA | ||
1/Y/789:798 | homologous HL_7RQB_023 | NA HL_39334.5* | ||
1/Y/823:831 | NA | NA | ||
1/Y/871:876 | homologous HL_7RQB_025 | NA HL_15942.5* | ||
1/Y/919:948 | NA | NA | ||
1/Y/998:1007 | geometric HL_3RG5_006 | NA HL_83315.1* | ||
1/Y/1022:1029 | homologous HL_7RQB_028 | NA HL_72451.5* | ||
1/Y/1083:1160 | NA | NA | ||
1/Y/1211:1221 | NA | NA | ||
1/Y/1260:1265 | homologous HL_7RQB_032 | NA HL_43074.18* | ||
1/Y/1318:1326 | homologous HL_7RQB_033 | NA HL_33239.17* | ||
1/Y/1361:1367 | homologous HL_7RQB_034 | NA HL_86880.5* | ||
1/Y/1400:1405 | homologous HL_7RQB_035 | NA HL_43074.18* | ||
1/Y/1426:1435 | homologous HL_7RQB_036 | NA HL_78457.4* | ||
1/Y/1511:1570 | NA | NA | ||
1/Y/1612:1615 | homologous HL_7RQB_039 | NA HL_69353.7* | ||
1/Y/1656:1663 | homologous HL_7RQB_040 | NA HL_66171.3* | ||
1/Y/1673:1681 | geometric HL_4WF9_039 | NA HL_42733.4* | ||
1/Y/1735:1740 | UNCG geometric HL_4LFB_009 | NA HL_79299.11* | ||
1/Y/1756:1773 | NA | NA | ||
1/Y/1779:1783 | homologous HL_7RQB_044 | NA HL_79272.3* | ||
1/Y/1804:1814 | homologous HL_7RQB_045 | NA HL_43613.4* | ||
1/Y/1833:1838 | homologous HL_7RQB_046 | NA HL_43074.18* | ||
1/Y/1894:1901 | NA | NA | ||
1/Y/1976:1984 | homologous HL_7RQB_049 | NA HL_53760.4* | ||
1/Y/2054:2063 | homologous HL_7RQB_050 | NA HL_90642.5* | ||
1/Y/2134:2209 | NA | NA | ||
1/Y/2236:2242 | NA | NA | ||
1/Y/2275:2283 | homologous HL_7RQB_053 | NA | ||
1/Y/2291:2303 | homologous HL_7RQB_054 | NA HL_19870.5* | ||
1/Y/2350:2359 | NA | NA | ||
1/Y/2382:2389 | homologous HL_7RQB_057 | NA HL_93727.5* | ||
1/Y/2401:2406 | homologous HL_7RQB_058 | NA HL_43074.18* | ||
1/Y/2431:2440 | homologous HL_7RQB_059 | NA HL_48376.4* | ||
1/Y/2497:2507 | NA | NA | ||
1/Y/2554:2563 | NA | NA | ||
1/Y/2578:2584 | NA | NA | ||
1/Y/2621:2626 | homologous HL_7RQB_063 | NA HL_43074.18* | ||
1/Y/2679:2695 | NA | NA | ||
1/Y/2727:2734 | geometric HL_5TBW_012 | NA HL_94386.1* | ||
1/Y/2772:2786 | NA | NA | ||
1/Y/2839:2847 | homologous HL_7RQB_068 | NA HL_05018.6* | ||
1/Y/2876:2881 | homologous HL_7RQB_069 | NA HL_43074.18* |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_7ASO_014 | NA | ||
HL_7ASO_076 | NA |
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/C/3:5, 1/C/110:112 | NA | NA | ||
1/X/29:34, 1/X/559:564 | NA | NA | ||
1/X/48:54, 1/X/366:369 | NA | NA | ||
1/X/125:127, 1/X/241:243 | NA | NA | ||
1/X/127:132, 1/X/239:241 | NA | NA | ||
1/X/132:137, 1/X/234:239 | NA | NA | ||
1/X/138:144, 1/X/178:233 | NA | NA | ||
1/X/297:303, 1/X/311:319 | NA | NA | ||
1/X/303:304, 1/X/309:311 | NA | NA | ||
1/X/327:330, 1/X/340:342 | NA | NA | ||
1/X/378:383, 1/X/397:399 | NA | NA | ||
1/X/383:384, 1/X/395:397 | NA | NA | ||
1/X/510:520, 1/X/547:552 | NA | NA | ||
1/X/522:529, 1/X/536:545 | NA | NA | ||
1/X/599:607, 1/X/647:656 | NA | NA | ||
1/X/607:610, 1/X/645:647 | NA | NA | ||
1/X/662:667, 1/X/754:762 | NA | NA | ||
1/X/669:674, 1/X/748:752 | NA | NA | ||
1/X/679:681, 1/X/725:743 | NA | NA | ||
1/X/681:690, 1/X/718:725 | NA | NA | ||
1/X/787:791, 1/X/807:811 | NA | NA | ||
1/X/897:906, 1/X/913:920 | NA | NA | ||
1/X/1314:1320, 1/X/1339:1345 | NA | NA | ||
1/X/1440:1442, 1/X/1482:1483 | NA | NA | ||
1/X/1442:1446, 1/X/1478:1482 | NA | NA | ||
1/X/1446:1448, 1/X/1476:1478 | NA | NA | ||
1/X/1449:1454, 1/X/1471:1475 | NA | NA | ||
1/X/1524:1527, 1/X/1532:1535 | NA | NA | ||
1/Y/4:7, 1/Y/2915:2918 | Tandem non-canonical cWW pairs geometric IL_1L9A_005 | NA IL_85877.10* | ||
1/Y/24:30, 1/Y/555:561 | Triple sheared with non-canonical cWW geometric IL_4WF9_001 | NA IL_66414.5* | ||
1/Y/36:37, 1/Y/488:490 | Single bulged A homologous IL_7RQB_002 | NA IL_80007.16* | ||
1/Y/42:44, 1/Y/480:483 | Minor groove platform with extra cWW geometric IL_4WF9_003 | NA IL_87332.1* | ||
1/Y/80:85, 1/Y/97:105 | geometric IL_6CZR_143 | NA IL_37722.1* | ||
1/Y/186:187, 1/Y/215:217 | NA | NA | ||
1/Y/190:197, 1/Y/204:212 | 9x8 Sarcin-Ricin; G-bulge geometric IL_4WF9_008 | NA IL_61812.1* | ||
1/Y/241:248, 1/Y/256:262 | 8x7 Sarcin-Ricin; G-bulge geometric IL_4WF9_009 | NA IL_04346.5* | ||
1/Y/304:308, 1/Y/407:413 | NA | NA | ||
1/Y/336:338, 1/Y/386:390 | NA | NA | ||
1/Y/527:530, 1/Y/541:554 | geometric IL_4WF9_015 | NA IL_60992.5* | ||
1/Y/581:584, 1/Y/597:600 | Double sheared geometric IL_4WF9_016 | NA IL_09705.7* | ||
1/Y/607:609, 1/Y/618:620 | geometric IL_4WF9_017 | NA IL_01312.13* | ||
1/Y/638:640, 1/Y/705:707 | geometric IL_2O3V_004 | NA IL_01312.13* | ||
1/Y/649:653, 1/Y/663:667 | AAA cross-strand stack homologous IL_7RQB_016 | NA IL_56467.6* | ||
1/Y/717:719, 1/Y/851:853 | geometric IL_7RQB_017 | NA IL_01312.13* | ||
1/Y/719:723, 1/Y/844:851 | homologous IL_7RQB_018 | NA IL_17470.5* | ||
1/Y/742:743, 1/Y/808:810 | Single bulged A homologous IL_7RQB_019 | NA IL_80007.16* | ||
1/Y/783:785, 1/Y/802:803 | Major groove platform geometric IL_5J7L_264 | NA IL_80663.10* | ||
1/Y/820:822, 1/Y/832:836 | Multiple bulged bases homologous IL_7RQB_023 | NA IL_90991.5* | ||
1/Y/882:883, 1/Y/984:986 | Single stack bend homologous IL_7RQB_024 | NA IL_04038.4* | ||
1/Y/889:893, 1/Y/975:978 | geometric IL_4WF9_029 | NA IL_06300.1* | ||
1/Y/897:898, 1/Y/969:971 | Single bulged U geometric IL_2A64_002 | NA IL_83039.11* | ||
1/Y/901:907, 1/Y/960:966 | 7x7 Sarcin-Ricin with intercalated A; G-bulge geometric IL_4WF9_031 | NA IL_93830.2* | ||
1/Y/907:908, 1/Y/958:960 | Minor groove platform geometric IL_7RQB_028 | NA IL_06437.11* | ||
1/Y/909:913, 1/Y/954:957 | C-loop homologous IL_7RQB_029 | NA IL_63596.4* | ||
1/Y/1038:1040, 1/Y/1203:1204 | Single bulged C homologous IL_7RQB_035 | NA IL_61258.10* | ||
1/Y/1042:1046, 1/Y/1197:1201 | UAA/GAN homologous IL_7RQB_036 | NA IL_53523.5* | ||
1/Y/1048:1055, 1/Y/1194:1195 | SSU/LSU pseudoknot geometric IL_7A0S_034 | NA IL_15861.6* | ||
1/Y/1055:1057, 1/Y/1193:1194 | Single bulged U homologous IL_7RQB_038 | NA IL_83039.11* | ||
1/Y/1062:1068, 1/Y/1184:1188 | homologous IL_7RQB_039 | NA IL_57188.3* | ||
1/Y/1068:1074, 1/Y/1168:1184 | geometric IL_4WF9_040 | NA IL_22615.1* | ||
1/Y/1075:1078, 1/Y/1165:1167 | Isolated non-canonical cWW with bulges homologous IL_7RQB_041 | NA IL_55456.1* | ||
1/Y/1081:1083, 1/Y/1160:1162 | geometric IL_4WF9_042 | NA IL_01312.13* | ||
1/Y/1235:1237, 1/Y/1285:1288 | Isolated cWS basepair homologous IL_7RQB_045 | NA IL_67621.5* | ||
1/Y/1243:1245, 1/Y/1277:1279 | Isolated cWH basepair geometric IL_4WF9_045 | NA IL_42589.6* | ||
1/Y/1246:1253, 1/Y/1272:1276 | Kink-turn homologous IL_7RQB_047 | NA IL_29549.9* | ||
1/Y/1257:1259, 1/Y/1266:1268 | Intercalated cWW geometric IL_4WF9_047 | NA IL_04038.4* | ||
1/Y/1300:1307, 1/Y/2038:2044 | 8x7 Sarcin-Ricin; G-bulge homologous IL_7RQB_049 | NA IL_04346.5* | ||
1/Y/1356:1360, 1/Y/1368:1370 | NA | NA | ||
1/Y/1388:1392, 1/Y/1413:1417 | UAA/GAN geometric IL_4WF9_051 | NA IL_34907.2* | ||
1/Y/1394:1398, 1/Y/1407:1411 | tSH-tHW-tHS homologous IL_7RQB_053 | NA IL_39521.5* | ||
1/Y/1695:1700, 1/Y/2031:2033 | homologous IL_7RQB_064 | NA IL_12566.2* | ||
1/Y/1707:1709, 1/Y/2022:2024 | Isolated tWW turn homologous IL_7RQB_065 | NA IL_54997.5* | ||
1/Y/1710:1713, 1/Y/2020:2021 | Major groove platform; stack outside cWW geometric IL_4WF9_064 | NA IL_70995.6* | ||
1/Y/1713:1718, 1/Y/2017:2020 | Intercalated tWH homologous IL_7RQB_067 | NA IL_01312.13* | ||
1/Y/1730:1735, 1/Y/1740:1746 | tSH-tSH-tHH-tHS homologous IL_7RQB_068 | NA IL_66584.5* | ||
1/Y/1797:1798, 1/Y/2007:2009 | Single bulged A homologous IL_7RQB_069 | NA IL_80007.16* | ||
1/Y/1825:1831, 1/Y/1840:1848 | Kink-turn related homologous IL_7RQB_070 | NA IL_17069.3* | ||
1/Y/1864:1867, 1/Y/1929:1930 | Major groove outside cWW, minor groove, intercalation pocket homologous IL_7RQB_071 | NA IL_31836.1* | ||
1/Y/1868:1869, 1/Y/1925:1928 | Major groove outside cWW, minor groove, intercalation pocket geometric IL_4WF9_071 | NA IL_13730.12* | ||
1/Y/1873:1876, 1/Y/1920:1921 | NA | NA | ||
1/Y/1877:1883, 1/Y/1913:1919 | NA | NA | ||
1/Y/1960:1961, 1/Y/1991:1994 | geometric IL_4V9F_070 | NA IL_69632.1* | ||
1/Y/1961:1972, 1/Y/1988:1991 | geometric IL_7A0S_072 | NA IL_07097.1* | ||
1/Y/2077:2079, 1/Y/2644:2645 | Major groove platform homologous IL_7RQB_078 | NA IL_80663.10* | ||
1/Y/2081:2083, 1/Y/2639:2642 | geometric IL_5J7L_321 | NA IL_54678.3* | ||
1/Y/2094:2096, 1/Y/2469:2470 | Single bulged U homologous IL_7RQB_080 | NA IL_83039.11* | ||
1/Y/2097:2098, 1/Y/2465:2468 | Minor groove platform homologous IL_7RQB_081 | NA IL_06437.11* | ||
1/Y/2108:2110, 1/Y/2263:2266 | Isolated tHS basepair with bulges homologous IL_7RQB_082 | NA IL_38958.6* | ||
1/Y/2111:2113, 1/Y/2260:2262 | homologous IL_7RQB_083 | NA IL_01312.13* | ||
1/Y/2123:2126, 1/Y/2217:2220 | Tandem non-canonical cWW pairs geometric IL_1D4R_001 | NA IL_85877.10* | ||
1/Y/2126:2128, 1/Y/2215:2217 | NA | NA | ||
1/Y/2229:2236, 1/Y/2242:2248 | NA | NA | ||
1/Y/2324:2328, 1/Y/2342:2348 | NA | NA | ||
1/Y/2377:2380, 1/Y/2391:2394 | Double sheared homologous IL_7RQB_089 | NA IL_09705.7* | ||
1/Y/2426:2431, 1/Y/2440:2444 | NA | NA | ||
1/Y/2480:2481, 1/Y/2525:2527 | Single stack bend homologous IL_7RQB_091 | NA IL_04038.4* | ||
1/Y/2481:2482, 1/Y/2523:2525 | Major groove platform geometric IL_4V9F_082 | NA IL_80663.10* | ||
1/Y/2484:2486, 1/Y/2520:2521 | Major groove platform geometric IL_7A0S_085 | NA IL_80663.10* | ||
1/Y/2486:2488, 1/Y/2516:2520 | Major groove minor groove platform with extra cWW geometric IL_7RQB_094 | NA IL_96042.4* | ||
1/Y/2493:2497, 1/Y/2507:2511 | Triple sheared geometric IL_4V9F_085 | NA IL_56467.6* | ||
1/Y/2534:2536, 1/Y/2606:2609 | Major groove platform with extra pair geometric IL_7RQB_093 | NA IL_87630.5* | ||
1/Y/2537:2539, 1/Y/2601:2605 | Isolated non-canonical cWW with bulges homologous IL_7RQB_097 | NA IL_01312.13* | ||
1/Y/2539:2540, 1/Y/2598:2601 | geometric IL_4WF9_096 | NA IL_69632.1* | ||
1/Y/2548:2552, 1/Y/2565:2571 | NA | NA | ||
1/Y/2618:2619, 1/Y/2628:2630 | Major groove platform geometric IL_4LFB_028 | NA IL_80663.10* | ||
1/Y/2663:2667, 1/Y/2801:2809 | tSH-tHS-tHW homologous IL_7RQB_102 | NA IL_34907.2* | ||
1/Y/2707:2711, 1/Y/2752:2754 | C-loop homologous IL_7RQB_104 | NA IL_63596.4* | ||
1/Y/2714:2718, 1/Y/2745:2749 | homologous IL_7RQB_105 | NA IL_08296.3* | ||
1/Y/2722:2723, 1/Y/2738:2741 | Multiple bulged bases homologous IL_7RQB_106 | NA IL_77034.1* | ||
1/Y/2764:2770, 1/Y/2788:2794 | NA | NA | ||
1/Y/2858:2859, 1/Y/2898:2900 | Single bulged C homologous IL_7RQB_108 | NA IL_61258.10* | ||
1/Y/2863:2865, 1/Y/2891:2894 | geometric IL_4WF9_107 | NA IL_02284.3* | ||
1/Y/2867:2872, 1/Y/2885:2889 | homologous IL_7RQB_110 | NA IL_83162.3* |
Problematic loops
No problematic loops
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/X/45:48, 1/X/369:378, 1/X/399:406 | NA | NA | ||
1/X/833:838, 1/X/866:871, 1/X/878:885 | NA | NA | ||
1/X/1000:1008, 1/X/1055:1059, 1/X/1221:1226 | NA | NA | ||
1/X/1084:1087, 1/X/1094:1100, 1/X/1109:1115 | NA | NA | ||
1/Y/30:31, 1/Y/520:527, 1/Y/554:555 | homologous J3_7RQB_001 | NA | ||
1/Y/56:67, 1/Y/74:76, 1/Y/109:113 | NA | NA | ||
1/Y/272:276, 1/Y/295:302, 1/Y/415:416 | homologous J3_7RQB_003 | NA | ||
1/Y/728:734, 1/Y/818:820, 1/Y/836:839 | NA | NA | ||
1/Y/743:745, 1/Y/777:781, 1/Y/805:808 | NA | NA | ||
1/Y/1335:1340, 1/Y/1669:1671, 1/Y/1683:1686 | homologous J3_7RQB_007 | NA | ||
1/Y/1343:1346, 1/Y/1649:1655, 1/Y/1664:1666 | homologous J3_7RQB_008 | NA | ||
1/Y/1860:1863, 1/Y/1931:1960, 1/Y/1994:1999 | NA | NA | ||
1/Y/2118:2120, 1/Y/2223:2229, 1/Y/2248:2255 | NA | NA | ||
1/Y/2322:2324, 1/Y/2348:2350, 1/Y/2359:2364 | NA | NA | ||
1/Y/2544:2547, 1/Y/2572:2574, 1/Y/2588:2594 | homologous J3_7RQB_012 | NA | ||
1/Y/2834:2835, 1/Y/2851:2856, 1/Y/2902:2906 | NA | NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_7ASO_001 | NA |
Coloring options: