7ASO | Motifs

89 Hairpin loops
113 Internal loops
17 Junction loops

Valid loops

#	loop id	location	annotation	motif
1	HL_7ASO_001 ➜	1/C/31:47	NA	NA
2	HL_7ASO_002 ➜	1/C/79:92	NA	NA
3	HL_7ASO_003 ➜	1/X/12:24	NA	NA
4	HL_7ASO_004 ➜	1/X/64:103	NA	NA
5	HL_7ASO_005 ➜	1/X/158:163	NA	NA
6	HL_7ASO_006 ➜	1/X/267:275	NA	NA
7	HL_7ASO_007 ➜	1/X/304:309	NA	NA
8	HL_7ASO_008 ➜	1/X/330:340	NA	NA
9	HL_7ASO_009 ➜	1/X/387:392	NA	NA
10	HL_7ASO_010 ➜	1/X/529:536	NA	NA
11	HL_7ASO_011 ➜	1/X/624:632	NA	NA
12	HL_7ASO_012 ➜	1/X/690:718	NA	NA
13	HL_7ASO_013 ➜	1/X/794:804	NA	NA
14	HL_7ASO_015 ➜	1/X/871:878	NA	NA
15	HL_7ASO_016 ➜	1/X/906:913	NA	NA
16	HL_7ASO_017 ➜	1/X/973:982	NA	NA
17	HL_7ASO_018 ➜	1/X/1008:1055	NA	NA
18	HL_7ASO_019 ➜	1/X/1088:1093	NA	NA
19	HL_7ASO_020 ➜	1/X/1100:1109	NA	NA
20	HL_7ASO_021 ➜	1/X/1175:1183	NA	NA
21	HL_7ASO_022 ➜	1/X/1320:1339	NA	NA
22	HL_7ASO_023 ➜	1/X/1367:1377	NA	NA
23	HL_7ASO_024 ➜	1/X/1455:1470	NA	NA
24	HL_7ASO_025 ➜	1/X/1527:1532	NA	NA
25	HL_7ASO_026 ➜	1/Y/67:74	NA	NA
26	HL_7ASO_027 ➜	1/Y/87:95	NA	NA
27	HL_7ASO_028 ➜	1/Y/122:127	NA	NA
28	HL_7ASO_029 ➜	1/Y/135:144	NA	NA
29	HL_7ASO_030 ➜	1/Y/152:177	NA	NA
30	HL_7ASO_031 ➜	1/Y/197:204	NA	NA
31	HL_7ASO_032 ➜	1/Y/228:233	NA	NA
32	HL_7ASO_033 ➜	1/Y/249:255	NA	NA
33	HL_7ASO_034 ➜	1/Y/278:293	NA	NA
34	HL_7ASO_035 ➜	1/Y/348:355	NA	NA
35	HL_7ASO_036 ➜	1/Y/370:378	NA	NA
36	HL_7ASO_037 ➜	1/Y/427:439	NA	NA
37	HL_7ASO_038 ➜	1/Y/456:463	NA	NA
38	HL_7ASO_039 ➜	1/Y/508:513	NA	NA
39	HL_7ASO_040 ➜	1/Y/533:538	NA	NA
40	HL_7ASO_041 ➜	1/Y/587:594	NA	NA
41	HL_7ASO_042 ➜	1/Y/609:618	NA	NA
42	HL_7ASO_043 ➜	1/Y/654:662	NA	NA
43	HL_7ASO_044 ➜	1/Y/674:679	NA	NA
44	HL_7ASO_045 ➜	1/Y/686:692	NA	NA
45	HL_7ASO_046 ➜	1/Y/747:775	NA	NA
46	HL_7ASO_047 ➜	1/Y/789:798	NA	NA
47	HL_7ASO_048 ➜	1/Y/823:831	NA	NA
48	HL_7ASO_049 ➜	1/Y/871:876	NA	NA
49	HL_7ASO_050 ➜	1/Y/919:948	NA	NA
50	HL_7ASO_051 ➜	1/Y/998:1007	NA	NA
51	HL_7ASO_052 ➜	1/Y/1022:1029	NA	NA
52	HL_7ASO_053 ➜	1/Y/1083:1160	NA	NA
53	HL_7ASO_054 ➜	1/Y/1211:1221	NA	NA
54	HL_7ASO_055 ➜	1/Y/1260:1265	NA	NA
55	HL_7ASO_056 ➜	1/Y/1318:1326	NA	NA
56	HL_7ASO_057 ➜	1/Y/1361:1367	NA	NA
57	HL_7ASO_058 ➜	1/Y/1400:1405	NA	NA
58	HL_7ASO_059 ➜	1/Y/1426:1435	NA	NA
59	HL_7ASO_060 ➜	1/Y/1511:1570	NA	NA
60	HL_7ASO_061 ➜	1/Y/1612:1615	NA	NA
61	HL_7ASO_062 ➜	1/Y/1656:1663	NA	NA
62	HL_7ASO_063 ➜	1/Y/1673:1681	NA	NA
63	HL_7ASO_064 ➜	1/Y/1735:1740	NA	NA
64	HL_7ASO_065 ➜	1/Y/1756:1773	NA	NA
65	HL_7ASO_066 ➜	1/Y/1779:1783	NA	NA
66	HL_7ASO_067 ➜	1/Y/1804:1814	NA	NA
67	HL_7ASO_068 ➜	1/Y/1833:1838	NA	NA
68	HL_7ASO_069 ➜	1/Y/1894:1901	NA	NA
69	HL_7ASO_070 ➜	1/Y/1976:1984	NA	NA
70	HL_7ASO_071 ➜	1/Y/2054:2063	NA	NA
71	HL_7ASO_072 ➜	1/Y/2134:2209	NA	NA
72	HL_7ASO_073 ➜	1/Y/2236:2242	NA	NA
73	HL_7ASO_074 ➜	1/Y/2275:2283	NA	NA
74	HL_7ASO_075 ➜	1/Y/2291:2303	NA	NA
75	HL_7ASO_077 ➜	1/Y/2350:2359	NA	NA
76	HL_7ASO_078 ➜	1/Y/2382:2389	NA	NA
77	HL_7ASO_079 ➜	1/Y/2401:2406	NA	NA
78	HL_7ASO_080 ➜	1/Y/2431:2440	NA	NA
79	HL_7ASO_081 ➜	1/Y/2497:2507	NA	NA
80	HL_7ASO_082 ➜	1/Y/2554:2563	NA	NA
81	HL_7ASO_083 ➜	1/Y/2578:2584	NA	NA
82	HL_7ASO_084 ➜	1/Y/2621:2626	NA	NA
83	HL_7ASO_085 ➜	1/Y/2679:2695	NA	NA
84	HL_7ASO_086 ➜	1/Y/2727:2734	NA	NA
85	HL_7ASO_087 ➜	1/Y/2772:2786	NA	NA
86	HL_7ASO_088 ➜	1/Y/2839:2847	NA	NA
87	HL_7ASO_089 ➜	1/Y/2876:2881	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_7ASO_014 ➜	incomplete nts	NA
2	HL_7ASO_076 ➜	incomplete nts	NA

Valid loops

#	loop id	location	annotation	motif
1	IL_7ASO_001 ➜	1/C/3:5,1/C/110:112	NA	NA
2	IL_7ASO_002 ➜	1/X/29:34,1/X/559:564	NA	NA
3	IL_7ASO_003 ➜	1/X/48:54,1/X/366:369	NA	NA
4	IL_7ASO_004 ➜	1/X/125:127,1/X/241:243	NA	NA
5	IL_7ASO_005 ➜	1/X/127:132,1/X/239:241	NA	NA
6	IL_7ASO_006 ➜	1/X/132:137,1/X/234:239	NA	NA
7	IL_7ASO_007 ➜	1/X/138:144,1/X/178:233	NA	NA
8	IL_7ASO_008 ➜	1/X/297:303,1/X/311:319	NA	NA
9	IL_7ASO_009 ➜	1/X/303:304,1/X/309:311	NA	NA
10	IL_7ASO_010 ➜	1/X/327:330,1/X/340:342	NA	NA
11	IL_7ASO_011 ➜	1/X/378:383,1/X/397:399	NA	NA
12	IL_7ASO_012 ➜	1/X/383:384,1/X/395:397	NA	NA
13	IL_7ASO_013 ➜	1/X/510:520,1/X/547:552	NA	NA
14	IL_7ASO_014 ➜	1/X/522:529,1/X/536:545	NA	NA
15	IL_7ASO_015 ➜	1/X/599:607,1/X/647:656	NA	NA
16	IL_7ASO_016 ➜	1/X/607:610,1/X/645:647	NA	NA
17	IL_7ASO_017 ➜	1/X/662:667,1/X/754:762	NA	NA
18	IL_7ASO_018 ➜	1/X/669:674,1/X/748:752	NA	NA
19	IL_7ASO_019 ➜	1/X/679:681,1/X/725:743	NA	NA
20	IL_7ASO_020 ➜	1/X/681:690,1/X/718:725	NA	NA
21	IL_7ASO_021 ➜	1/X/787:791,1/X/807:811	NA	NA
22	IL_7ASO_022 ➜	1/X/897:906,1/X/913:920	NA	NA
23	IL_7ASO_023 ➜	1/X/1314:1320,1/X/1339:1345	NA	NA
24	IL_7ASO_024 ➜	1/X/1440:1442,1/X/1482:1483	NA	NA
25	IL_7ASO_025 ➜	1/X/1442:1446,1/X/1478:1482	NA	NA
26	IL_7ASO_026 ➜	1/X/1446:1448,1/X/1476:1478	NA	NA
27	IL_7ASO_027 ➜	1/X/1449:1454,1/X/1471:1475	NA	NA
28	IL_7ASO_028 ➜	1/X/1524:1527,1/X/1532:1535	NA	NA
29	IL_7ASO_029 ➜	1/Y/4:7,1/Y/2915:2918	NA	NA
30	IL_7ASO_030 ➜	1/Y/24:30,1/Y/555:561	NA	NA
31	IL_7ASO_031 ➜	1/Y/36:37,1/Y/488:490	NA	NA
32	IL_7ASO_032 ➜	1/Y/42:44,1/Y/480:483	NA	NA
33	IL_7ASO_033 ➜	1/Y/80:85,1/Y/97:105	NA	NA
34	IL_7ASO_034 ➜	1/Y/186:187,1/Y/215:217	NA	NA
35	IL_7ASO_035 ➜	1/Y/190:197,1/Y/204:212	NA	NA
36	IL_7ASO_036 ➜	1/Y/241:248,1/Y/256:262	NA	NA
37	IL_7ASO_037 ➜	1/Y/304:308,1/Y/407:413	NA	NA
38	IL_7ASO_038 ➜	1/Y/336:338,1/Y/386:390	NA	NA
39	IL_7ASO_039 ➜	1/Y/527:530,1/Y/541:554	NA	NA
40	IL_7ASO_040 ➜	1/Y/581:584,1/Y/597:600	NA	NA
41	IL_7ASO_041 ➜	1/Y/607:609,1/Y/618:620	NA	NA
42	IL_7ASO_042 ➜	1/Y/638:640,1/Y/705:707	NA	NA
43	IL_7ASO_043 ➜	1/Y/649:653,1/Y/663:667	NA	NA
44	IL_7ASO_044 ➜	1/Y/717:719,1/Y/851:853	NA	NA
45	IL_7ASO_045 ➜	1/Y/719:723,1/Y/844:851	NA	NA
46	IL_7ASO_046 ➜	1/Y/742:743,1/Y/808:810	NA	NA
47	IL_7ASO_047 ➜	1/Y/783:785,1/Y/802:803	NA	NA
48	IL_7ASO_048 ➜	1/Y/820:822,1/Y/832:836	NA	NA
49	IL_7ASO_049 ➜	1/Y/882:883,1/Y/984:986	NA	NA
50	IL_7ASO_050 ➜	1/Y/889:893,1/Y/975:978	NA	NA
51	IL_7ASO_051 ➜	1/Y/897:898,1/Y/969:971	NA	NA
52	IL_7ASO_052 ➜	1/Y/901:907,1/Y/960:966	NA	NA
53	IL_7ASO_053 ➜	1/Y/907:908,1/Y/958:960	NA	NA
54	IL_7ASO_054 ➜	1/Y/909:913,1/Y/954:957	NA	NA
55	IL_7ASO_055 ➜	1/Y/1038:1040,1/Y/1203:1204	NA	NA
56	IL_7ASO_056 ➜	1/Y/1042:1046,1/Y/1197:1201	NA	NA
57	IL_7ASO_057 ➜	1/Y/1048:1055,1/Y/1194:1195	NA	NA
58	IL_7ASO_058 ➜	1/Y/1055:1057,1/Y/1193:1194	NA	NA
59	IL_7ASO_059 ➜	1/Y/1062:1068,1/Y/1184:1188	NA	NA
60	IL_7ASO_060 ➜	1/Y/1068:1074,1/Y/1168:1184	NA	NA
61	IL_7ASO_061 ➜	1/Y/1075:1078,1/Y/1165:1167	NA	NA
62	IL_7ASO_062 ➜	1/Y/1081:1083,1/Y/1160:1162	NA	NA
63	IL_7ASO_063 ➜	1/Y/1235:1237,1/Y/1285:1288	NA	NA
64	IL_7ASO_064 ➜	1/Y/1243:1245,1/Y/1277:1279	NA	NA
65	IL_7ASO_065 ➜	1/Y/1246:1253,1/Y/1272:1276	NA	NA
66	IL_7ASO_066 ➜	1/Y/1257:1259,1/Y/1266:1268	NA	NA
67	IL_7ASO_067 ➜	1/Y/1300:1307,1/Y/2038:2044	NA	NA
68	IL_7ASO_068 ➜	1/Y/1356:1360,1/Y/1368:1370	NA	NA
69	IL_7ASO_069 ➜	1/Y/1388:1392,1/Y/1413:1417	NA	NA
70	IL_7ASO_070 ➜	1/Y/1394:1398,1/Y/1407:1411	NA	NA
71	IL_7ASO_071 ➜	1/Y/1695:1700,1/Y/2031:2033	NA	NA
72	IL_7ASO_072 ➜	1/Y/1707:1709,1/Y/2022:2024	NA	NA
73	IL_7ASO_073 ➜	1/Y/1710:1713,1/Y/2020:2021	NA	NA
74	IL_7ASO_074 ➜	1/Y/1713:1718,1/Y/2017:2020	NA	NA
75	IL_7ASO_075 ➜	1/Y/1730:1735,1/Y/1740:1746	NA	NA
76	IL_7ASO_076 ➜	1/Y/1797:1798,1/Y/2007:2009	NA	NA
77	IL_7ASO_077 ➜	1/Y/1825:1831,1/Y/1840:1848	NA	NA
78	IL_7ASO_078 ➜	1/Y/1864:1867,1/Y/1929:1930	NA	NA
79	IL_7ASO_079 ➜	1/Y/1868:1869,1/Y/1925:1928	NA	NA
80	IL_7ASO_080 ➜	1/Y/1873:1876,1/Y/1920:1921	NA	NA
81	IL_7ASO_081 ➜	1/Y/1877:1883,1/Y/1913:1919	NA	NA
82	IL_7ASO_082 ➜	1/Y/1960:1961,1/Y/1991:1994	NA	NA
83	IL_7ASO_083 ➜	1/Y/1961:1972,1/Y/1988:1991	NA	NA
84	IL_7ASO_084 ➜	1/Y/2077:2079,1/Y/2644:2645	NA	NA
85	IL_7ASO_085 ➜	1/Y/2081:2083,1/Y/2639:2642	NA	NA
86	IL_7ASO_086 ➜	1/Y/2094:2096,1/Y/2469:2470	NA	NA
87	IL_7ASO_087 ➜	1/Y/2097:2098,1/Y/2465:2468	NA	NA
88	IL_7ASO_088 ➜	1/Y/2108:2110,1/Y/2263:2266	NA	NA
89	IL_7ASO_089 ➜	1/Y/2111:2113,1/Y/2260:2262	NA	NA
90	IL_7ASO_090 ➜	1/Y/2123:2126,1/Y/2217:2220	NA	NA
91	IL_7ASO_091 ➜	1/Y/2126:2128,1/Y/2215:2217	NA	NA
92	IL_7ASO_092 ➜	1/Y/2229:2236,1/Y/2242:2248	NA	NA
93	IL_7ASO_093 ➜	1/Y/2324:2328,1/Y/2342:2348	NA	NA
94	IL_7ASO_094 ➜	1/Y/2377:2380,1/Y/2391:2394	NA	NA
95	IL_7ASO_095 ➜	1/Y/2426:2431,1/Y/2440:2444	NA	NA
96	IL_7ASO_096 ➜	1/Y/2480:2481,1/Y/2525:2527	NA	NA
97	IL_7ASO_097 ➜	1/Y/2481:2482,1/Y/2523:2525	NA	NA
98	IL_7ASO_098 ➜	1/Y/2484:2486,1/Y/2520:2521	NA	NA
99	IL_7ASO_099 ➜	1/Y/2486:2488,1/Y/2516:2520	NA	NA
100	IL_7ASO_100 ➜	1/Y/2493:2497,1/Y/2507:2511	NA	NA
101	IL_7ASO_101 ➜	1/Y/2534:2536,1/Y/2606:2609	NA	NA
102	IL_7ASO_102 ➜	1/Y/2537:2539,1/Y/2601:2605	NA	NA
103	IL_7ASO_103 ➜	1/Y/2539:2540,1/Y/2598:2601	NA	NA
104	IL_7ASO_104 ➜	1/Y/2548:2552,1/Y/2565:2571	NA	NA
105	IL_7ASO_105 ➜	1/Y/2618:2619,1/Y/2628:2630	NA	NA
106	IL_7ASO_106 ➜	1/Y/2663:2667,1/Y/2801:2809	NA	NA
107	IL_7ASO_107 ➜	1/Y/2707:2711,1/Y/2752:2754	NA	NA
108	IL_7ASO_108 ➜	1/Y/2714:2718,1/Y/2745:2749	NA	NA
109	IL_7ASO_109 ➜	1/Y/2722:2723,1/Y/2738:2741	NA	NA
110	IL_7ASO_110 ➜	1/Y/2764:2770,1/Y/2788:2794	NA	NA
111	IL_7ASO_111 ➜	1/Y/2858:2859,1/Y/2898:2900	NA	NA
112	IL_7ASO_112 ➜	1/Y/2863:2865,1/Y/2891:2894	NA	NA
113	IL_7ASO_113 ➜	1/Y/2867:2872,1/Y/2885:2889	NA	NA

Problematic loops

No problematic loops

Valid loops

#	loop id	location	annotation	motif
1	J3_7ASO_002 ➜	1/X/45:48,1/X/369:378,1/X/399:406	NA	NA
2	J3_7ASO_003 ➜	1/X/833:838,1/X/866:871,1/X/878:885	NA	NA
3	J3_7ASO_004 ➜	1/X/1000:1008,1/X/1055:1059,1/X/1221:1226	NA	NA
4	J3_7ASO_005 ➜	1/X/1084:1087,1/X/1094:1100,1/X/1109:1115	NA	NA
5	J3_7ASO_006 ➜	1/Y/30:31,1/Y/520:527,1/Y/554:555	NA	NA
6	J3_7ASO_007 ➜	1/Y/56:67,1/Y/74:76,1/Y/109:113	NA	NA
7	J3_7ASO_008 ➜	1/Y/272:276,1/Y/295:302,1/Y/415:416	NA	NA
8	J3_7ASO_009 ➜	1/Y/728:734,1/Y/818:820,1/Y/836:839	NA	NA
9	J3_7ASO_010 ➜	1/Y/743:745,1/Y/777:781,1/Y/805:808	NA	NA
10	J3_7ASO_011 ➜	1/Y/1335:1340,1/Y/1669:1671,1/Y/1683:1686	NA	NA
11	J3_7ASO_012 ➜	1/Y/1343:1346,1/Y/1649:1655,1/Y/1664:1666	NA	NA
12	J3_7ASO_013 ➜	1/Y/1860:1863,1/Y/1931:1960,1/Y/1994:1999	NA	NA
13	J3_7ASO_014 ➜	1/Y/2118:2120,1/Y/2223:2229,1/Y/2248:2255	NA	NA
14	J3_7ASO_015 ➜	1/Y/2322:2324,1/Y/2348:2350,1/Y/2359:2364	NA	NA
15	J3_7ASO_016 ➜	1/Y/2544:2547,1/Y/2572:2574,1/Y/2588:2594	NA	NA
16	J3_7ASO_017 ➜	1/Y/2834:2835,1/Y/2851:2856,1/Y/2902:2906	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	J3_7ASO_001 ➜	incomplete nts	NA

Coloring options: Nucleotide numbers

7ASO Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops