7BOG Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/A/12:22 | NA | NA |
| 2 | ➜ | 1/A/158:163 | NA | NA |
| 3 | ➜ | 1/A/186:191 | NA | NA |
| 4 | ➜ | 1/A/259:267 | NA | NA |
| 5 | ➜ | 1/A/296:301 | NA | NA |
| 6 | ➜ | 1/A/320:333 | NA | NA |
| 7 | ➜ | 1/A/342:347 | NA | NA |
| 8 | ➜ | 1/A/379:384 | NA | NA |
| 9 | ➜ | 1/A/419:424 | NA | NA |
| 10 | ➜ | 1/A/521:528 | NA | NA |
| 11 | ➜ | 1/A/617:623 | NA | NA |
| 12 | ➜ | 1/A/726:731 | NA | NA |
| 13 | ➜ | 1/A/862:867 | NA | NA |
| 14 | ➜ | 1/A/897:902 | NA | NA |
Problematic loops
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/A/30:32,1/A/552:553 | NA | NA |
| 2 | ➜ | 1/A/44:45,1/A/396:398 | NA | NA |
| 3 | ➜ | 1/A/47:52,1/A/359:361 | NA | NA |
| 4 | ➜ | 1/A/54:56,1/A/356:357 | NA | NA |
| 5 | ➜ | 1/A/63:66,1/A/103:104 | NA | NA |
| 6 | ➜ | 1/A/67:69,1/A/99:102 | NA | NA |
| 7 | ➜ | 1/A/75:76,1/A/93:95 | NA | NA |
| 8 | ➜ | 1/A/128:131,1/A/231:233 | NA | NA |
| 9 | ➜ | 1/A/132:136,1/A/227:230 | NA | NA |
| 10 | ➜ | 1/A/144:146,1/A/176:178 | NA | NA |
| 11 | ➜ | 1/A/147:153,1/A/168:175 | NA | NA |
| 12 | ➜ | 1/A/242:247,1/A/277:284 | NA | NA |
| 13 | ➜ | 1/A/249:252,1/A/274:275 | NA | NA |
| 14 | ➜ | 1/A/292:293,1/A/304:308 | NA | NA |
| 15 | ➜ | 1/A/367:369,1/A/392:393 | NA | NA |
| 16 | ➜ | 1/A/371:375,1/A/389:390 | NA | NA |
| 17 | ➜ | 1/A/375:376,1/A/387:389 | NA | NA |
| 18 | ➜ | 1/A/409:416,1/A/427:433 | NA | NA |
| 19 | ➜ | 1/A/446:450,1/A/483:488 | NA | NA |
| 20 | ➜ | 1/A/450:455,1/A/477:483 | NA | NA |
| 21 | ➜ | 1/A/504:511,1/A/540:541 | NA | NA |
| 22 | ➜ | 1/A/515:521,1/A/528:536 | NA | NA |
| 23 | ➜ | 1/A/580:584,1/A/757:761 | NA | NA |
| 24 | ➜ | 1/A/594:596,1/A/644:645 | NA | NA |
| 25 | ➜ | 1/A/597:598,1/A/640:643 | NA | NA |
| 26 | ➜ | 1/A/605:612,1/A/628:633 | NA | NA |
| 27 | ➜ | 1/A/654:655,1/A/751:754 | NA | NA |
| 28 | ➜ | 1/A/659:660,1/A/745:747 | NA | NA |
| 29 | ➜ | 1/A/662:666,1/A/740:743 | NA | NA |
| 30 | ➜ | 1/A/673:678,1/A/712:717 | NA | NA |
| 31 | ➜ | 1/A/774:778,1/A/804:805 | NA | NA |
| 32 | ➜ | 1/A/887:894,1/A/905:910 | NA | NA |
| 33 | ➜ | 1/A/922:923,1/A/1393:1395 | NA | NA |
| 34 | ➜ | 1/A/925:927,1/A/1390:1391 | NA | NA |
Problematic loops
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