7M4U Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/a/14:24 | NA | NA |
| 2 | ➜ | 1/a/82:85 | NA | NA |
| 3 | ➜ | 1/a/154:159 | NA | NA |
| 4 | ➜ | 1/a/182:187 | NA | NA |
| 5 | ➜ | 1/a/203:208 | NA | NA |
| 6 | ➜ | 1/a/255:263 | NA | NA |
| 7 | ➜ | 1/a/292:297 | NA | NA |
| 8 | ➜ | 1/a/316:329 | NA | NA |
| 9 | ➜ | 1/a/338:343 | NA | NA |
| 10 | ➜ | 1/a/375:380 | NA | NA |
| 11 | ➜ | 1/a/415:420 | NA | NA |
| 12 | ➜ | 1/a/458:466 | NA | NA |
| 13 | ➜ | 1/a/518:525 | NA | NA |
| 14 | ➜ | 1/a/614:620 | NA | NA |
| 15 | ➜ | 1/a/686:695 | NA | NA |
| 16 | ➜ | 1/a/723:728 | NA | NA |
| 17 | ➜ | 1/a/783:793 | NA | NA |
| 18 | ➜ | 1/a/838:842 | NA | NA |
| 19 | ➜ | 1/a/859:864 | NA | NA |
| 20 | ➜ | 1/a/894:899 | NA | NA |
| 21 | ➜ | 1/a/960:969 | NA | NA |
| 22 | ➜ | 1/a/1009:1014 | NA | NA |
| 23 | ➜ | 1/a/1025:1030 | NA | NA |
| 24 | ➜ | 1/a/1073:1078 | NA | NA |
| 25 | ➜ | 1/a/1086:1093 | NA | NA |
| 26 | ➜ | 1/a/1131:1137 | NA | NA |
| 27 | ➜ | 1/a/1161:1169 | NA | NA |
| 28 | ➜ | 1/a/1262:1267 | NA | NA |
| 29 | ➜ | 1/a/1311:1320 | NA | NA |
| 30 | ➜ | 1/a/1353:1363 | NA | NA |
| 31 | ➜ | 1/a/1446:1451 | NA | NA |
| 32 | ➜ | 1/a/1512:1517 | NA | NA |
Problematic loops
No problematic loops
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/a/32:34,1/a/549:550 | NA | NA |
| 2 | ➜ | 1/a/46:47,1/a/392:394 | NA | NA |
| 3 | ➜ | 1/a/49:54,1/a/355:357 | NA | NA |
| 4 | ➜ | 1/a/56:58,1/a/352:353 | NA | NA |
| 5 | ➜ | 1/a/65:68,1/a/99:100 | NA | NA |
| 6 | ➜ | 1/a/69:71,1/a/96:98 | NA | NA |
| 7 | ➜ | 1/a/73:77,1/a/90:94 | NA | NA |
| 8 | ➜ | 1/a/124:127,1/a/227:229 | NA | NA |
| 9 | ➜ | 1/a/128:132,1/a/223:226 | NA | NA |
| 10 | ➜ | 1/a/140:142,1/a/172:174 | NA | NA |
| 11 | ➜ | 1/a/143:149,1/a/164:171 | NA | NA |
| 12 | ➜ | 1/a/199:202,1/a/209:210 | NA | NA |
| 13 | ➜ | 1/a/238:243,1/a/273:280 | NA | NA |
| 14 | ➜ | 1/a/245:248,1/a/270:271 | NA | NA |
| 15 | ➜ | 1/a/288:289,1/a/300:304 | NA | NA |
| 16 | ➜ | 1/a/363:365,1/a/388:389 | NA | NA |
| 17 | ➜ | 1/a/367:371,1/a/385:386 | NA | NA |
| 18 | ➜ | 1/a/371:372,1/a/383:385 | NA | NA |
| 19 | ➜ | 1/a/405:412,1/a/423:429 | NA | NA |
| 20 | ➜ | 1/a/436:438,1/a/489:494 | NA | NA |
| 21 | ➜ | 1/a/442:446,1/a/480:485 | NA | NA |
| 22 | ➜ | 1/a/446:449,1/a/476:480 | NA | NA |
| 23 | ➜ | 1/a/452:453,1/a/471:473 | NA | NA |
| 24 | ➜ | 1/a/501:508,1/a/537:538 | NA | NA |
| 25 | ➜ | 1/a/512:518,1/a/525:533 | NA | NA |
| 26 | ➜ | 1/a/566:572,1/a/877:878 | NA | NA |
| 27 | ➜ | 1/a/577:581,1/a/754:758 | NA | NA |
| 28 | ➜ | 1/a/591:593,1/a/641:642 | NA | NA |
| 29 | ➜ | 1/a/594:595,1/a/637:640 | NA | NA |
| 30 | ➜ | 1/a/602:609,1/a/625:630 | NA | NA |
| 31 | ➜ | 1/a/651:652,1/a/748:751 | NA | NA |
| 32 | ➜ | 1/a/656:657,1/a/742:744 | NA | NA |
| 33 | ➜ | 1/a/659:663,1/a/737:740 | NA | NA |
| 34 | ➜ | 1/a/670:675,1/a/709:714 | NA | NA |
| 35 | ➜ | 1/a/681:685,1/a/696:703 | NA | NA |
| 36 | ➜ | 1/a/771:775,1/a/801:802 | NA | NA |
| 37 | ➜ | 1/a/776:780,1/a/796:800 | NA | NA |
| 38 | ➜ | 1/a/884:891,1/a/902:907 | NA | NA |
| 39 | ➜ | 1/a/919:920,1/a/1390:1392 | NA | NA |
| 40 | ➜ | 1/a/922:924,1/a/1387:1388 | NA | NA |
| 41 | ➜ | 1/a/930:932,1/a/1377:1381 | NA | NA |
| 42 | ➜ | 1/a/950:951,1/a/1223:1225 | NA | NA |
| 43 | ➜ | 1/a/990:994,1/a/1041:1042 | NA | NA |
| 44 | ➜ | 1/a/995:996,1/a/1038:1040 | NA | NA |
| 45 | ➜ | 1/a/1003:1006,1/a/1017:1020 | NA | NA |
| 46 | ➜ | 1/a/1045:1047,1/a/1205:1206 | NA | NA |
| 47 | ➜ | 1/a/1047:1049,1/a/1203:1205 | NA | NA |
| 48 | ➜ | 1/a/1049:1053,1/a/1201:1203 | NA | NA |
| 49 | ➜ | 1/a/1054:1055,1/a/1196:1200 | NA | NA |
| 50 | ➜ | 1/a/1057:1058,1/a/1192:1194 | NA | NA |
| 51 | ➜ | 1/a/1058:1060,1/a/1190:1192 | NA | NA |
| 52 | ➜ | 1/a/1120:1125,1/a/1141:1147 | NA | NA |
| 53 | ➜ | 1/a/1126:1129,1/a/1139:1140 | NA | NA |
| 54 | ➜ | 1/a/1155:1158,1/a/1172:1178 | NA | NA |
| 55 | ➜ | 1/a/1244:1250,1/a/1281:1287 | NA | NA |
| 56 | ➜ | 1/a/1252:1255,1/a/1274:1279 | NA | NA |
| 57 | ➜ | 1/a/1256:1259,1/a/1270:1273 | NA | NA |
| 58 | ➜ | 1/a/1300:1305,1/a/1326:1331 | NA | NA |
| 59 | ➜ | 1/a/1396:1398,1/a/1498:1501 | NA | NA |
| 60 | ➜ | 1/a/1398:1401,1/a/1494:1498 | NA | NA |
| 61 | ➜ | 1/a/1402:1404,1/a/1491:1493 | NA | NA |
| 62 | ➜ | 1/a/1404:1406,1/a/1488:1491 | NA | NA |
| 63 | ➜ | 1/a/1409:1411,1/a/1483:1485 | NA | NA |
| 64 | ➜ | 1/a/1413:1416,1/a/1478:1481 | NA | NA |
| 65 | ➜ | 1/a/1418:1420,1/a/1474:1476 | NA | NA |
| 66 | ➜ | 1/a/1427:1432,1/a/1463:1467 | NA | NA |
| 67 | ➜ | 1/a/1437:1439,1/a/1457:1458 | NA | NA |
| 68 | ➜ | 1/a/1442:1445,1/a/1452:1454 | NA | NA |
Problematic loops
No problematic loops
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/a/48:49,1/a/357:363,1/a/389:391 | NA | NA |
| 2 | ➜ | 1/a/583:585,1/a/648:651,1/a/751:752 | NA | NA |
| 3 | ➜ | 1/a/669:670,1/a/714:722,1/a/729:731 | NA | NA |
| 4 | ➜ | 1/a/823:826,1/a/854:858,1/a/865:871 | NA | NA |
| 5 | ➜ | 1/a/940:943,1/a/1232:1234,1/a/1334:1337 | NA | NA |
| 6 | ➜ | 1/a/952:959,1/a/970:981,1/a/1218:1222 | NA | NA |
| 7 | ➜ | 1/a/987:990,1/a/1042:1044,1/a/1207:1212 | NA | NA |
| 8 | ➜ | 1/a/999:1003,1/a/1020:1024,1/a/1031:1035 | NA | NA |
| 9 | ➜ | 1/a/1060:1065,1/a/1104:1110,1/a/1184:1190 | NA | NA |
| 10 | ➜ | 1/a/1070:1071,1/a/1080:1084,1/a/1095:1099 | NA | NA |
| 11 | ➜ | 1/a/1113:1115,1/a/1152:1155,1/a/1178:1181 | NA | NA |
| 12 | ➜ | 1/a/1234:1238,1/a/1293:1300,1/a/1331:1334 | NA | NA |
Problematic loops
No problematic loops
Coloring options: