Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7M4Y_0011/A/66:75No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_29414.1
HL_7M4Y_0021/A/92:105No text annotation
Not in a motif group
HL_7M4Y_0031/A/130:135No text annotation
Not in a motif group
homologous
HL_4WF9_003
HL_62869.3
HL_7M4Y_0041/A/144:149No text annotation
Not in a motif group
geometric
HL_1WZ2_007
HL_05692.1
HL_7M4Y_0051/A/165:175No text annotation
Not in a motif group
homologous
HL_5J7L_138
HL_81820.1
HL_7M4Y_0061/A/201:208No text annotation
Not in a motif group
geometric
HL_4WF9_006
HL_23481.5
HL_7M4Y_0071/A/232:237No text annotation
Not in a motif group
geometric
HL_3DIL_004
HL_51033.1
HL_7M4Y_0081/A/253:259No text annotation
Not in a motif group
homologous
HL_7RQB_008
HL_67216.5
HL_7M4Y_0091/A/307:314T-loop with 1 bulged base
Not in a motif group
geometric
HL_5DH6_002
HL_68493.6
HL_7M4Y_0101/A/321:325No text annotation
Not in a motif group
homologous
HL_5J7L_143
HL_98557.5
HL_7M4Y_0111/A/329:337No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.6
HL_7M4Y_0121/A/381:391No text annotation
Not in a motif group
homologous
HL_5J7L_145
HL_91503.3
HL_7M4Y_0131/A/409:416No text annotation
Not in a motif group
homologous
HL_7A0S_014
HL_32512.8
HL_7M4Y_0141/A/461:466GNRA
Not in a motif group
homologous
HL_4WF9_015
HL_43074.18
HL_7M4Y_0151/A/486:492No text annotation
Not in a motif group
homologous
HL_5J7L_148
HL_68304.6
HL_7M4Y_0161/A/542:548No text annotation
Not in a motif group
geometric
HL_361D_002
HL_18218.2
HL_7M4Y_0171/A/564:573T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_150
HL_33239.17
HL_7M4Y_0181/A/609:615No text annotation
Not in a motif group
homologous
HL_5J7L_151
HL_25660.1
HL_7M4Y_0191/A/627:632GNRA
Not in a motif group
homologous
HL_5J7L_152
HL_43074.18
HL_7M4Y_0201/A/639:645No text annotation
Not in a motif group
homologous
HL_7RQB_021
HL_02361.6
HL_7M4Y_0211/A/710:717No text annotation
Not in a motif group
homologous
HL_5J7L_154
HL_93727.5
HL_7M4Y_0221/A/742:751No text annotation
Not in a motif group
homologous
HL_4WF9_023
HL_39334.5
HL_7M4Y_0231/A/777:783No text annotation
Not in a motif group
homologous
HL_7RQB_024
HL_16898.3
HL_7M4Y_0241/A/824:829No text annotation
Not in a motif group
homologous
HL_7RQB_025
HL_15942.5
HL_7M4Y_0261/A/951:960No text annotation
Not in a motif group
homologous
HL_5J7L_159
NA
HL_7M4Y_0271/A/975:982No text annotation
Not in a motif group
homologous
HL_4WF9_028
HL_72451.5
HL_7M4Y_0281/A/1169:1173No text annotation
Not in a motif group
HL_7M4Y_0291/A/1217:1222No text annotation
Not in a motif group
homologous
HL_7A0S_031
HL_68304.6
HL_7M4Y_0301/A/1276:1284T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_165
HL_33239.17
HL_7M4Y_0311/A/1319:1325No text annotation
Not in a motif group
homologous
HL_5J7L_166
HL_86880.5
HL_7M4Y_0321/A/1358:1363Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_43074.18
HL_7M4Y_0331/A/1384:1393No text annotation
Not in a motif group
homologous
HL_5J7L_168
HL_78457.4
HL_7M4Y_0341/A/1446:1454No text annotation
Not in a motif group
geometric
HL_5J7L_169
HL_71540.1
HL_7M4Y_0351/A/1487:1493No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_86880.5
HL_7M4Y_0361/A/1530:1535No text annotation
Not in a motif group
HL_7M4Y_0371/A/1563:1566No text annotation
Not in a motif group
homologous
HL_5J7L_172
HL_69353.7
HL_7M4Y_0381/A/1610:1617No text annotation
Not in a motif group
homologous
HL_4WF9_038
HL_66171.3
HL_7M4Y_0391/A/1628:1634GNRA with one bulged base
Not in a motif group
homologous
HL_5J7L_174
HL_02361.6
HL_7M4Y_0401/A/1689:1694No text annotation
Not in a motif group
homologous
HL_7RQB_042
HL_79299.11
HL_7M4Y_0411/A/1723:1729No text annotation
Not in a motif group
HL_7M4Y_0421/A/1748:1752No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_79272.3
HL_7M4Y_0431/A/1773:1783No text annotation
Not in a motif group
homologous
HL_5J7L_178
HL_43613.4
HL_7M4Y_0441/A/1802:1807No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_43074.18
HL_7M4Y_0451/A/1864:1869GNRA
Not in a motif group
geometric
HL_5B2P_001
HL_43074.18
HL_7M4Y_0461/A/1906:1916No text annotation
Not in a motif group
homologous
HL_5J7L_181
NA
HL_7M4Y_0471/A/1945:1953No text annotation
Not in a motif group
homologous
HL_5J7L_182
HL_53760.4
HL_7M4Y_0481/A/2023:2032No text annotation
Not in a motif group
HL_7M4Y_0491/A/2205:2211No text annotation
Not in a motif group
homologous
HL_5J7L_185
HL_16845.5
HL_7M4Y_0501/A/2244:2252No text annotation
Not in a motif group
homologous
HL_4WF9_049
HL_46891.3
HL_7M4Y_0511/A/2260:2272No text annotation
Not in a motif group
homologous
HL_5J7L_187
HL_19870.5
HL_7M4Y_0521/A/2299:2309No text annotation
Not in a motif group
homologous
HL_7RQB_055
HL_11805.3
HL_7M4Y_0531/A/2320:2327No text annotation
Not in a motif group
homologous
HL_5J7L_189
HL_46142.8
HL_7M4Y_0541/A/2351:2358No text annotation
Not in a motif group
homologous
HL_4WF9_053
HL_93727.5
HL_7M4Y_0551/A/2370:2375GNRA
Not in a motif group
homologous
HL_5J7L_191
HL_43074.18
HL_7M4Y_0561/A/2400:2409No text annotation
Not in a motif group
homologous
HL_5J7L_192
HL_48376.4
HL_7M4Y_0571/A/2467:2475No text annotation
Not in a motif group
homologous
HL_4WF9_056
HL_36421.5
HL_7M4Y_0581/A/2524:2531No text annotation
Not in a motif group
homologous
HL_5J7L_194
HL_92681.5
HL_7M4Y_0591/A/2547:2553No text annotation
Not in a motif group
homologous
HL_5J7L_195
NA
HL_7M4Y_0601/A/2590:2595GNRA
Not in a motif group
homologous
HL_5J7L_196
HL_43074.18
HL_7M4Y_0611/A/2654:2659No text annotation
Not in a motif group
homologous
HL_7RQB_064
HL_43074.18
HL_7M4Y_0621/A/2697:2702Ribsomal LSU H95
Not in a motif group
homologous
HL_5J7L_198
HL_67719.1
HL_7M4Y_0631/A/2741:2755No text annotation
Not in a motif group
homologous
HL_5J7L_199
HL_56677.5
HL_7M4Y_0641/A/2792:2795No text annotation
Not in a motif group
geometric
HL_4V88_192
HL_69353.7
HL_7M4Y_0651/A/2815:2823No text annotation
Not in a motif group
homologous
HL_7RQB_068
HL_05018.6
HL_7M4Y_0661/A/2852:2857Other HL
Not in a motif group
homologous
HL_4WF9_065
HL_43074.18
HL_7M4Y_0671/B/36:42No text annotation
Not in a motif group
homologous
HL_5J7L_203
HL_02733.5
HL_7M4Y_0681/B/83:88No text annotation
Not in a motif group
geometric
HL_1WZ2_007
HL_05692.1
HL_7M4Y_0691/a/14:24No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_67265.4
HL_7M4Y_0701/a/82:85No text annotation
Not in a motif group
geometric
HL_4WF9_037
HL_69353.7
HL_7M4Y_0711/a/154:159GNRA
Not in a motif group
homologous
HL_6CZR_074
HL_43074.18
HL_7M4Y_0721/a/182:187No text annotation
Not in a motif group
geometric
HL_6SY6_001
HL_79299.11
HL_7M4Y_0731/a/203:208No text annotation
Not in a motif group
geometric
HL_1WZ2_007
HL_05692.1
HL_7M4Y_0741/a/255:263No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_93727.5
HL_7M4Y_0751/a/292:297GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_43074.18
HL_7M4Y_0761/a/316:329No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_7M4Y_0771/a/338:343UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_79299.11
HL_7M4Y_0781/a/375:380GNRA
Not in a motif group
homologous
HL_4LFB_010
HL_43074.18
HL_7M4Y_0791/a/415:420No text annotation
Not in a motif group
geometric
HL_5TBW_018
HL_00996.1
HL_7M4Y_0801/a/458:466No text annotation
Not in a motif group
homologous
HL_5J7L_012
HL_42733.4
HL_7M4Y_0811/a/518:525No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_58912.1
HL_7M4Y_0821/a/614:620No text annotation
Not in a motif group
homologous
HL_5J7L_014
HL_26055.6
HL_7M4Y_0831/a/686:695No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_87219.4
HL_7M4Y_0841/a/723:728Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_43074.18
HL_7M4Y_0851/a/783:793No text annotation
Not in a motif group
homologous
HL_5J7L_017
HL_87219.4
HL_7M4Y_0861/a/838:842No text annotation
Not in a motif group
HL_7M4Y_0871/a/859:864GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_43074.18
HL_7M4Y_0881/a/894:899GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_43074.18
HL_7M4Y_0891/a/960:969No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_7M4Y_0901/a/1009:1014GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_43074.18
HL_7M4Y_0911/a/1025:1030No text annotation
Not in a motif group
geometric
HL_5TBW_006
HL_98557.5
HL_7M4Y_0921/a/1073:1078GNRA
Not in a motif group
homologous
HL_4LFB_024
HL_43074.18
HL_7M4Y_0931/a/1086:1093No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_54035.7
HL_7M4Y_0941/a/1131:1137No text annotation
Not in a motif group
homologous
HL_4LFB_026
HL_01472.4
HL_7M4Y_0951/a/1161:1169No text annotation
Not in a motif group
geometric
HL_7A0S_056
HL_93727.5
HL_7M4Y_0961/a/1262:1267GNRA
Not in a motif group
homologous
HL_5J7L_027
HL_43074.18
HL_7M4Y_0971/a/1311:1320No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_78061.2
HL_7M4Y_0981/a/1353:1363No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_70505.1
HL_7M4Y_0991/a/1446:1451UNCG
Not in a motif group
homologous
HL_4LFB_031
HL_79299.11
HL_7M4Y_1001/a/1512:1517No text annotation
Not in a motif group
homologous
HL_6CZR_103
NA
HL_7M4Y_1011/v/13:23No text annotation
Not in a motif group
homologous
HL_4LCK_001
NA
HL_7M4Y_1021/v/32:40tRNA anticodon loop
Not in a motif group
homologous
HL_3TUP_002
HL_97724.2
HL_7M4Y_1031/v/54:62No text annotation
Not in a motif group
homologous
HL_1SER_002
NA

Problematic loops

#loop idProblemSequence
HL_7M4Y_025No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7M4Y_0011/A/31:37,
1/A/509:515
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_245
IL_66414.5
IL_7M4Y_0021/A/43:44,
1/A/441:443
Single bulged A
Not in a motif group
homologous
IL_5J7L_246
IL_80007.16
IL_7M4Y_0031/A/50:51,
1/A/433:435
Minor groove platform
Not in a motif group
homologous
IL_5J7L_247
IL_06437.11
IL_7M4Y_0041/A/88:92,
1/A/105:112
Kink-turn
Not in a motif group
homologous
IL_7RQB_004
IL_29549.9
IL_7M4Y_0051/A/190:191,
1/A/219:221
Single stack bend
Not in a motif group
homologous
IL_7A0S_005
IL_04038.4
IL_7M4Y_0061/A/195:201,
1/A/208:215
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_250
IL_04346.5
IL_7M4Y_0071/A/246:252,
1/A/260:265
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_251
IL_35110.5
IL_7M4Y_0081/A/276:279,
1/A/366:369
No text annotation
Not in a motif group
IL_7M4Y_0091/A/279:282,
1/A/362:366
No text annotation
Not in a motif group
geometric
IL_5J7L_299
IL_68574.2
IL_7M4Y_0101/A/295:297,
1/A/345:349
No text annotation
Not in a motif group
homologous
IL_5J7L_254
IL_69440.1
IL_7M4Y_0111/A/305:307,
1/A/314:316
No text annotation
Not in a motif group
geometric
IL_3BNR_007
IL_01312.13
IL_7M4Y_0121/A/480:483,
1/A/495:508
No text annotation
Not in a motif group
geometric
IL_5J7L_255
IL_60992.5
IL_7M4Y_0131/A/535:538,
1/A/552:555
Double sheared
Not in a motif group
homologous
IL_5J7L_256
IL_09705.7
IL_7M4Y_0141/A/562:564,
1/A/573:575
No text annotation
Not in a motif group
geometric
IL_4WF9_017
IL_01312.13
IL_7M4Y_0151/A/604:608,
1/A/616:620
AAA cross-strand stack
Not in a motif group
homologous
IL_7RQB_016
IL_56467.6
IL_7M4Y_0161/A/670:672,
1/A/804:806
No text annotation
Not in a motif group
geometric
IL_4WF9_020
IL_01312.13
IL_7M4Y_0171/A/672:676,
1/A/797:804
tHW-tHW cross-strand stack
Not in a motif group
homologous
IL_5J7L_260
IL_17470.5
IL_7M4Y_0181/A/695:696,
1/A/761:763
Single bulged A
Not in a motif group
geometric
IL_5J7L_261
IL_80007.16
IL_7M4Y_0191/A/700:701,
1/A/726:728
Single bulged G
Not in a motif group
geometric
IL_7RQB_020
IL_59137.10
IL_7M4Y_0201/A/701:705,
1/A/722:726
Triple sheared
Not in a motif group
homologous
IL_7RQB_021
IL_56467.6
IL_7M4Y_0211/A/736:738,
1/A/755:756
Major groove platform
Not in a motif group
homologous
IL_5J7L_264
IL_80663.10
IL_7M4Y_0221/A/740:742,
1/A/751:753
No text annotation
Not in a motif group
homologous
IL_7A0S_020
IL_01312.13
IL_7M4Y_0231/A/773:775,
1/A/785:789
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_265
IL_90991.5
IL_7M4Y_0241/A/841:845,
1/A/930:932
No text annotation
Not in a motif group
geometric
IL_5J7L_332
IL_56105.1
IL_7M4Y_0251/A/845:846,
1/A/928:930
No text annotation
Not in a motif group
IL_7M4Y_0261/A/848:849,
1/A/924:926
Single stack bend
Not in a motif group
homologous
IL_5J7L_269
IL_04038.4
IL_7M4Y_0271/A/854:860,
1/A/913:919
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_5J7L_270
IL_93830.2
IL_7M4Y_0281/A/860:861,
1/A/911:913
Minor groove platform
Not in a motif group
homologous
IL_7A0S_028
IL_06437.11
IL_7M4Y_0291/A/862:866,
1/A/907:910
C-loop
Not in a motif group
homologous
IL_7A0S_029
IL_63596.4
IL_7M4Y_0301/A/868:870,
1/A/903:905
No text annotation
Not in a motif group
homologous
IL_5J7L_273
IL_01312.13
IL_7M4Y_0311/A/991:993,
1/A/1157:1158
Single bulged C
Not in a motif group
homologous
IL_7RQB_035
IL_61258.10
IL_7M4Y_0321/A/995:999,
1/A/1151:1155
UAA/GAN
Not in a motif group
homologous
IL_7A0S_033
IL_53523.5
IL_7M4Y_0331/A/1001:1008,
1/A/1148:1149
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_278
IL_15861.6
IL_7M4Y_0341/A/1008:1010,
1/A/1147:1148
Single bulged U
Not in a motif group
geometric
IL_5J7L_279
IL_83039.11
IL_7M4Y_0351/A/1015:1021,
1/A/1137:1142
No text annotation
Not in a motif group
geometric
IL_7RQB_039
IL_57188.3
IL_7M4Y_0361/A/1021:1027,
1/A/1121:1137
No text annotation
Not in a motif group
homologous
IL_5J7L_281
IL_22615.1
IL_7M4Y_0371/A/1028:1031,
1/A/1118:1120
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_282
IL_55456.1
IL_7M4Y_0381/A/1035:1038,
1/A/1111:1114
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_283
IL_85877.10
IL_7M4Y_0391/A/1040:1050,
1/A/1103:1109
No text annotation
Not in a motif group
IL_7M4Y_0401/A/1191:1193,
1/A/1242:1245
Isolated cWS basepair
Not in a motif group
homologous
IL_4WF9_044
IL_67621.5
IL_7M4Y_0411/A/1197:1201,
1/A/1235:1238
No text annotation
Not in a motif group
homologous
IL_5J7L_287
IL_91920.1
IL_7M4Y_0421/A/1203:1210,
1/A/1229:1233
Kink-turn
Not in a motif group
homologous
IL_7RQB_047
IL_29549.9
IL_7M4Y_0431/A/1257:1264,
1/A/2007:2013
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_289
IL_04346.5
IL_7M4Y_0441/A/1305:1308,
1/A/1601:1602
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_5J7L_290
IL_70995.6
IL_7M4Y_0451/A/1314:1318,
1/A/1326:1328
C-loop
Not in a motif group
homologous
IL_5J7L_291
IL_08376.2
IL_7M4Y_0461/A/1346:1350,
1/A/1371:1375
UAA/GAN
Not in a motif group
homologous
IL_5J7L_292
IL_34907.2
IL_7M4Y_0471/A/1352:1356,
1/A/1365:1369
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_39521.5
IL_7M4Y_0481/A/1408:1411,
1/A/1580:1587
No text annotation
Not in a motif group
IL_7M4Y_0491/A/1412:1416,
1/A/1575:1579
UAA/GAN
Not in a motif group
homologous
IL_5J7L_295
IL_53523.5
IL_7M4Y_0501/A/1427:1430,
1/A/1555:1559
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_296
IL_85877.10
IL_7M4Y_0511/A/1432:1435,
1/A/1549:1553
tSH-tHW
Not in a motif group
homologous
IL_7RQB_057
IL_08757.3
IL_7M4Y_0521/A/1445:1446,
1/A/1454:1456
Single bulged U
Not in a motif group
homologous
IL_5J7L_298
IL_83039.11
IL_7M4Y_0531/A/1468:1473,
1/A/1509:1514
No text annotation
Not in a motif group
IL_7M4Y_0541/A/1476:1478,
1/A/1501:1506
No text annotation
Not in a motif group
IL_7M4Y_0551/A/1484:1486,
1/A/1494:1495
Single bulged A
Not in a motif group
homologous
IL_5J7L_302
IL_80007.16
IL_7M4Y_0561/A/1522:1525,
1/A/1540:1544
No text annotation
Not in a motif group
IL_7M4Y_0571/A/1649:1654,
1/A/2000:2002
No text annotation
Not in a motif group
homologous
IL_5J7L_304
IL_12566.2
IL_7M4Y_0581/A/1661:1663,
1/A/1991:1993
Isolated tWW turn
Not in a motif group
homologous
IL_4WF9_063
IL_54997.5
IL_7M4Y_0591/A/1664:1667,
1/A/1989:1990
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_066
IL_80663.10
IL_7M4Y_0601/A/1667:1672,
1/A/1986:1989
Intercalated tWH
Not in a motif group
geometric
IL_4WF9_065
IL_01312.13
IL_7M4Y_0611/A/1684:1689,
1/A/1694:1700
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_5J7L_308
IL_66584.5
IL_7M4Y_0621/A/1716:1720,
1/A/1732:1736
Triple sheared
Not in a motif group
geometric
IL_4WFL_001
IL_56467.6
IL_7M4Y_0631/A/1766:1767,
1/A/1976:1978
Single bulged A
Not in a motif group
homologous
IL_5J7L_312
IL_80007.16
IL_7M4Y_0641/A/1794:1800,
1/A/1809:1817
Kink-turn related
Not in a motif group
homologous
IL_7A0S_065
IL_17069.3
IL_7M4Y_0651/A/1833:1836,
1/A/1898:1899
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_314
IL_06437.11
IL_7M4Y_0661/A/1837:1838,
1/A/1894:1897
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_13730.12
IL_7M4Y_0671/A/1842:1845,
1/A/1889:1890
No text annotation
Not in a motif group
homologous
IL_4WF9_072
NA
IL_7M4Y_0681/A/1860:1863,
1/A/1870:1874
UAA/GAN related
Not in a motif group
homologous
IL_5J7L_317
IL_81389.2
IL_7M4Y_0691/A/1929:1930,
1/A/1960:1963
Multiple bulged bases
Not in a motif group
geometric
IL_5J7L_318
IL_69632.1
IL_7M4Y_0701/A/1930:1941,
1/A/1957:1960
No text annotation
Not in a motif group
homologous
IL_4WF9_077
IL_70285.1
IL_7M4Y_0711/A/2045:2048,
1/A/2613:2615
Major groove platform with extra pair
Not in a motif group
geometric
IL_7RQB_093
IL_87630.5
IL_7M4Y_0721/A/2050:2052,
1/A/2608:2611
No text annotation
Not in a motif group
homologous
IL_5J7L_321
IL_54678.3
IL_7M4Y_0731/A/2060:2062,
1/A/2440:2442
No text annotation
Not in a motif group
homologous
IL_5J7L_322
NA
IL_7M4Y_0741/A/2063:2066,
1/A/2437:2439
No text annotation
Not in a motif group
geometric
IL_5C5W_002
IL_87880.2
IL_7M4Y_0751/A/2066:2067,
1/A/2434:2437
Minor groove platform
Not in a motif group
homologous
IL_7RQB_081
IL_06437.11
IL_7M4Y_0761/A/2077:2079,
1/A/2232:2235
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_082
IL_38958.6
IL_7M4Y_0771/A/2081:2083,
1/A/2228:2230
No text annotation
Not in a motif group
homologous
IL_5J7L_326
IL_01312.13
IL_7M4Y_0781/A/2198:2200,
1/A/2216:2217
Single bulged U
Not in a motif group
homologous
IL_5J7L_331
IL_21340.1
IL_7M4Y_0791/A/2293:2295,
1/A/2313:2317
No text annotation
Not in a motif group
geometric
IL_4V9F_072
IL_23663.4
IL_7M4Y_0801/A/2346:2349,
1/A/2360:2363
Double sheared
Not in a motif group
homologous
IL_5J7L_333
IL_09705.7
IL_7M4Y_0811/A/2397:2399,
1/A/2410:2411
Single bulged U
Not in a motif group
homologous
IL_5J7L_334
IL_21340.1
IL_7M4Y_0821/A/2449:2450,
1/A/2494:2496
Single stack bend
Not in a motif group
homologous
IL_4WF9_089
IL_04038.4
IL_7M4Y_0831/A/2450:2451,
1/A/2492:2494
Major groove platform
Not in a motif group
geometric
IL_7RQB_092
IL_80663.10
IL_7M4Y_0841/A/2452:2455,
1/A/2489:2491
Major groove platform with extra pair
Not in a motif group
geometric
IL_4OQU_001
IL_87630.5
IL_7M4Y_0851/A/2455:2457,
1/A/2485:2489
Major groove minor groove platform with extra cWW
Not in a motif group
homologous
IL_7A0S_086
IL_96042.4
IL_7M4Y_0861/A/2462:2466,
1/A/2476:2480
Triple sheared
Not in a motif group
homologous
IL_5J7L_338
IL_56467.6
IL_7M4Y_0871/A/2503:2505,
1/A/2575:2578
No text annotation
Not in a motif group
homologous
IL_5J7L_339
NA
IL_7M4Y_0881/A/2506:2508,
1/A/2570:2574
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5J7L_340
IL_01312.13
IL_7M4Y_0891/A/2508:2509,
1/A/2567:2570
No text annotation
Not in a motif group
homologous
IL_5J7L_341
IL_44093.1
IL_7M4Y_0901/A/2518:2519,
1/A/2536:2539
Minor groove platform with intercalation
Not in a motif group
homologous
IL_7A0S_091
IL_95601.1
IL_7M4Y_0911/A/2584:2586,
1/A/2600:2602
No text annotation
Not in a motif group
homologous
IL_7RQB_100
NA
IL_7M4Y_0921/A/2587:2588,
1/A/2597:2599
Single bulged A
Not in a motif group
homologous
IL_5J7L_344
IL_80007.16
IL_7M4Y_0931/A/2632:2636,
1/A/2770:2778
tSH-tHS-tHW
Not in a motif group
homologous
IL_4WF9_099
IL_34907.2
IL_7M4Y_0941/A/2647:2654,
1/A/2659:2665
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_5TBW_116
IL_04346.5
IL_7M4Y_0951/A/2676:2680,
1/A/2721:2723
C-loop
Not in a motif group
homologous
IL_4WF9_101
IL_63596.4
IL_7M4Y_0961/A/2683:2687,
1/A/2714:2718
No text annotation
Not in a motif group
homologous
IL_4WF9_102
IL_08296.3
IL_7M4Y_0971/A/2691:2692,
1/A/2707:2710
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_349
IL_13730.12
IL_7M4Y_0981/A/2733:2738,
1/A/2758:2763
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_7RQB_107
IL_49767.4
IL_7M4Y_0991/A/2791:2792,
1/A/2795:2797
Single bulged U
Not in a motif group
geometric
IL_5J7L_279
IL_83039.11
IL_7M4Y_1001/A/2802:2807,
1/A/2885:2888
No text annotation
Not in a motif group
homologous
IL_5J7L_351
IL_82988.1
IL_7M4Y_1011/A/2834:2835,
1/A/2874:2876
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_352
IL_80663.10
IL_7M4Y_1021/A/2839:2842,
1/A/2866:2870
Multiple bulged bases with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_353
IL_58764.1
IL_7M4Y_1031/A/2843:2848,
1/A/2861:2865
No text annotation
Not in a motif group
homologous
IL_5J7L_354
IL_83162.3
IL_7M4Y_1041/B/15:16,
1/B/63:65
Major groove intercalation
Not in a motif group
homologous
IL_4WF9_112
IL_40508.4
IL_7M4Y_1051/B/20:26,
1/B/54:59
No text annotation
Not in a motif group
IL_7M4Y_1061/B/28:29,
1/B/49:52
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_357
IL_09061.4
IL_7M4Y_1071/B/31:36,
1/B/42:47
No text annotation
Not in a motif group
IL_7M4Y_1081/B/69:77,
1/B/94:102
Bacterial 5S Loop E
Not in a motif group
homologous
IL_7RQB_115
IL_56455.3
IL_7M4Y_1091/a/32:34,
1/a/549:550
Single bulged G
Not in a motif group
homologous
IL_5J7L_001
IL_59137.10
IL_7M4Y_1101/a/46:47,
1/a/392:394
Single bulged A
Not in a motif group
homologous
IL_5J7L_002
IL_80007.16
IL_7M4Y_1111/a/49:54,
1/a/355:357
No text annotation
Not in a motif group
IL_7M4Y_1121/a/56:58,
1/a/352:353
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_06437.11
IL_7M4Y_1131/a/65:68,
1/a/99:100
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_005
IL_13730.12
IL_7M4Y_1141/a/69:71,
1/a/96:98
No text annotation
Not in a motif group
homologous
IL_6CZR_118
IL_01312.13
IL_7M4Y_1151/a/73:77,
1/a/90:94
No text annotation
Not in a motif group
geometric
IL_5TBW_121
IL_05867.1
IL_7M4Y_1161/a/124:127,
1/a/227:229
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_009
IL_55456.1
IL_7M4Y_1171/a/128:132,
1/a/223:226
Minor groove platform related
Not in a motif group
homologous
IL_5J7L_010
IL_58764.1
IL_7M4Y_1181/a/140:142,
1/a/172:174
Isolated cWH basepair
Not in a motif group
homologous
IL_5J7L_011
IL_42589.6
IL_7M4Y_1191/a/143:149,
1/a/164:171
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_92440.5
IL_7M4Y_1201/a/199:202,
1/a/209:210
Minor groove platform
Not in a motif group
geometric
IL_3MXH_005
IL_94431.4
IL_7M4Y_1211/a/238:243,
1/a/273:280
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4LFB_011
IL_29549.9
IL_7M4Y_1221/a/245:248,
1/a/270:271
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_83121.7
IL_7M4Y_1231/a/288:289,
1/a/300:304
C-loop
Not in a motif group
homologous
IL_5J7L_016
IL_08376.2
IL_7M4Y_1241/a/363:365,
1/a/388:389
Single bulged U
Not in a motif group
homologous
IL_5J7L_017
IL_83039.11
IL_7M4Y_1251/a/367:371,
1/a/385:386
C-loop
Not in a motif group
homologous
IL_5J7L_018
IL_08376.2
IL_7M4Y_1261/a/371:372,
1/a/383:385
Single bulged G
Not in a motif group
geometric
IL_5J7L_019
IL_59137.10
IL_7M4Y_1271/a/405:412,
1/a/423:429
No text annotation
Not in a motif group
homologous
IL_4LFB_017
IL_45257.1
IL_7M4Y_1281/a/436:438,
1/a/489:494
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_45289.1
IL_7M4Y_1291/a/442:446,
1/a/480:485
tSH-tHW-tWW
Not in a motif group
homologous
IL_5J7L_022
IL_98711.1
IL_7M4Y_1301/a/446:449,
1/a/476:480
No text annotation
Not in a motif group
IL_7M4Y_1311/a/452:453,
1/a/471:473
Single stack bend
Not in a motif group
geometric
IL_5J7L_032
IL_04038.4
IL_7M4Y_1321/a/501:508,
1/a/537:538
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4LFB_020
IL_15861.6
IL_7M4Y_1331/a/512:518,
1/a/525:533
No text annotation
Not in a motif group
homologous
IL_4LFB_021
NA
IL_7M4Y_1341/a/566:572,
1/a/877:878
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_19222.1
IL_7M4Y_1351/a/577:581,
1/a/754:758
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_023
IL_39521.5
IL_7M4Y_1361/a/591:593,
1/a/641:642
Major groove platform
Not in a motif group
homologous
IL_5J7L_028
IL_80663.10
IL_7M4Y_1371/a/594:595,
1/a/637:640
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.4
IL_7M4Y_1381/a/602:609,
1/a/625:630
No text annotation
Not in a motif group
homologous
IL_5J7L_030
IL_01502.1
IL_7M4Y_1391/a/651:652,
1/a/748:751
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4LFB_027
IL_80663.10
IL_7M4Y_1401/a/656:657,
1/a/742:744
Single stack bend
Not in a motif group
homologous
IL_5J7L_032
IL_04038.4
IL_7M4Y_1411/a/659:663,
1/a/737:740
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_85877.10
IL_7M4Y_1421/a/670:675,
1/a/709:714
No text annotation
Not in a motif group
homologous
IL_4LFB_030
IL_94518.4
IL_7M4Y_1431/a/681:685,
1/a/696:703
Kink-turn
Not in a motif group
homologous
IL_5J7L_035
IL_90922.1
IL_7M4Y_1441/a/771:775,
1/a/801:802
Left turn
Not in a motif group
homologous
IL_5J7L_036
IL_19389.4
IL_7M4Y_1451/a/776:780,
1/a/796:800
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_037
IL_39521.5
IL_7M4Y_1461/a/884:891,
1/a/902:907
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_5J7L_038
IL_24606.1
IL_7M4Y_1471/a/919:920,
1/a/1390:1392
Single bulged A
Not in a motif group
homologous
IL_5J7L_039
IL_80007.16
IL_7M4Y_1481/a/922:924,
1/a/1387:1388
Single bulged G
Not in a motif group
homologous
IL_5J7L_040
IL_59137.10
IL_7M4Y_1491/a/930:932,
1/a/1377:1381
Minor groove platform
Not in a motif group
homologous
IL_5J7L_041
IL_94431.4
IL_7M4Y_1501/a/950:951,
1/a/1223:1225
No text annotation
Not in a motif group
homologous
IL_6CZR_150
NA
IL_7M4Y_1511/a/990:994,
1/a/1041:1042
Minor groove platform
Not in a motif group
homologous
IL_4LFB_039
IL_94431.4
IL_7M4Y_1521/a/995:996,
1/a/1038:1040
Single stack bend
Not in a motif group
homologous
IL_5J7L_044
IL_04038.4
IL_7M4Y_1531/a/1003:1006,
1/a/1017:1020
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_6JDV_001
IL_85877.10
IL_7M4Y_1541/a/1045:1047,
1/a/1205:1206
Single bulged U
Not in a motif group
homologous
IL_5J7L_046
IL_83039.11
IL_7M4Y_1551/a/1047:1049,
1/a/1203:1205
UG cWW
Not in a motif group
geometric
IL_4LFB_061
IL_01312.13
IL_7M4Y_1561/a/1049:1053,
1/a/1201:1203
Isolated cWS basepair
Not in a motif group
geometric
IL_4LFB_044
IL_67621.5
IL_7M4Y_1571/a/1054:1055,
1/a/1196:1200
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_06437.11
IL_7M4Y_1581/a/1057:1058,
1/a/1192:1194
Single bulged A
Not in a motif group
homologous
IL_5J7L_049
IL_80007.16
IL_7M4Y_1591/a/1058:1060,
1/a/1190:1192
No text annotation
Not in a motif group
geometric
IL_5J7L_050
IL_01312.13
IL_7M4Y_1601/a/1120:1125,
1/a/1141:1147
No text annotation
Not in a motif group
IL_7M4Y_1611/a/1126:1129,
1/a/1139:1140
Minor groove platform
Not in a motif group
homologous
IL_5J7L_052
IL_94431.4
IL_7M4Y_1621/a/1155:1158,
1/a/1172:1178
No text annotation
Not in a motif group
geometric
IL_5J7L_053
IL_42032.1
IL_7M4Y_1631/a/1244:1250,
1/a/1281:1287
No text annotation
Not in a motif group
homologous
IL_4LFB_051
IL_09129.1
IL_7M4Y_1641/a/1252:1255,
1/a/1274:1279
No text annotation
Not in a motif group
homologous
IL_4LFB_052
IL_75461.2
IL_7M4Y_1651/a/1256:1259,
1/a/1270:1273
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_461
IL_85877.10
IL_7M4Y_1661/a/1300:1305,
1/a/1326:1331
No text annotation
Not in a motif group
geometric
IL_4LFB_055
IL_19954.1
IL_7M4Y_1671/a/1396:1398,
1/a/1498:1501
No text annotation
Not in a motif group
homologous
IL_5J7L_058
IL_36143.2
IL_7M4Y_1681/a/1398:1401,
1/a/1494:1498
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_59281.1
IL_7M4Y_1691/a/1402:1404,
1/a/1491:1493
No text annotation
Not in a motif group
geometric
IL_5MWI_007
IL_01312.13
IL_7M4Y_1701/a/1404:1406,
1/a/1488:1491
No text annotation
Not in a motif group
geometric
IL_6DME_003
IL_23663.4
IL_7M4Y_1711/a/1409:1411,
1/a/1483:1485
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_01312.13
IL_7M4Y_1721/a/1413:1416,
1/a/1478:1481
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.7
IL_7M4Y_1731/a/1417:1420,
1/a/1474:1477
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_402D_001
IL_85877.10
IL_7M4Y_1741/a/1427:1432,
1/a/1463:1467
Triple sheared related
Not in a motif group
homologous
IL_5J7L_063
IL_64879.1
IL_7M4Y_1751/a/1437:1439,
1/a/1457:1458
No text annotation
Not in a motif group
IL_7M4Y_1761/a/1442:1445,
1/a/1452:1454
No text annotation
Not in a motif group
homologous
IL_5J7L_065
IL_02284.3
IL_7M4Y_1771/v/51:53,
1/v/63:65
Isolated cWH basepair
Not in a motif group
homologous
IL_3FOZ_001
IL_01312.13

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7M4Y_0011/A/37:38,
1/A/473:480,
1/A/508:509
No text annotation
Not in a motif group
J3_7M4Y_0021/A/63:64,
1/A/77:83,
1/A/117:121
No text annotation
Not in a motif group
homologous
J3_5J7L_037
NA
J3_7M4Y_0031/A/681:687,
1/A/771:773,
1/A/789:792
No text annotation
Not in a motif group
J3_7M4Y_0041/A/696:698,
1/A/730:734,
1/A/758:761
No text annotation
Not in a motif group
homologous
J3_7RQB_005
NA
J3_7M4Y_0051/A/1293:1298,
1/A/1623:1625,
1/A/1637:1640
No text annotation
Not in a motif group
homologous
J3_4WF9_004
NA
J3_7M4Y_0061/A/1301:1304,
1/A/1603:1609,
1/A/1618:1620
No text annotation
Not in a motif group
homologous
J3_7RQB_008
NA
J3_7M4Y_0071/A/1339:1344,
1/A/1377:1380,
1/A/1397:1398
No text annotation
Not in a motif group
homologous
J3_5J7L_043
NA
J3_7M4Y_0081/A/2087:2089,
1/A/2192:2196,
1/A/2219:2224
No text annotation
Not in a motif group
homologous
J3_5J7L_044
NA
J3_7M4Y_0091/A/2291:2293,
1/A/2317:2319,
1/A/2328:2333
No text annotation
Not in a motif group
homologous
J3_5J7L_045
NA
J3_7M4Y_0101/A/2513:2516,
1/A/2541:2543,
1/A/2557:2563
No text annotation
Not in a motif group
homologous
J3_5J7L_046
NA
J3_7M4Y_0111/A/2785:2787,
1/A/2801:2802,
1/A/2888:2890
No text annotation
Not in a motif group
J3_7M4Y_0121/A/2810:2811,
1/A/2827:2832,
1/A/2878:2882
No text annotation
Not in a motif group
J3_7M4Y_0131/B/7:14,
1/B/66:67,
1/B/104:108
No text annotation
Not in a motif group
J3_7M4Y_0141/a/48:49,
1/a/357:363,
1/a/389:391
No text annotation
Not in a motif group
J3_7M4Y_0151/a/583:585,
1/a/648:651,
1/a/751:752
No text annotation
Not in a motif group
J3_7M4Y_0161/a/668:670,
1/a/714:722,
1/a/729:732
No text annotation
Not in a motif group
J3_7M4Y_0171/a/823:826,
1/a/854:858,
1/a/865:871
No text annotation
Not in a motif group
homologous
J3_5J7L_004
NA
J3_7M4Y_0181/a/940:943,
1/a/1232:1234,
1/a/1334:1337
No text annotation
Not in a motif group
J3_7M4Y_0191/a/952:959,
1/a/970:981,
1/a/1218:1222
No text annotation
Not in a motif group
homologous
J3_4LFB_004
NA
J3_7M4Y_0201/a/987:990,
1/a/1042:1044,
1/a/1207:1212
No text annotation
Not in a motif group
J3_7M4Y_0211/a/999:1003,
1/a/1020:1024,
1/a/1031:1035
No text annotation
Not in a motif group
J3_7M4Y_0221/a/1060:1065,
1/a/1104:1110,
1/a/1184:1190
No text annotation
Not in a motif group
J3_7M4Y_0231/a/1070:1071,
1/a/1080:1084,
1/a/1095:1099
No text annotation
Not in a motif group
homologous
J3_5J7L_009
NA
J3_7M4Y_0241/a/1113:1115,
1/a/1152:1155,
1/a/1178:1181
No text annotation
Not in a motif group
homologous
J3_5J7L_010
NA
J3_7M4Y_0251/a/1234:1238,
1/a/1293:1300,
1/a/1331:1334
No text annotation
Not in a motif group
homologous
J3_4LFB_009
NA

Problematic loops

No problematic loops


Coloring options:
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