7OF1 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7OF1_005 | 1/1/194:201 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_7OF1_006 | 1/1/208:212 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
| HL_7OF1_007 | 1/1/216:224 | No text annotation Not in a motif group | homologous HL_8C3A_007 HL_08002.8 | |
| HL_7OF1_013 | 1/1/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_42097.1 | |
| HL_7OF1_061 | 1/1/3194:3197 | No text annotation Not in a motif group | homologous HL_5TBW_068 HL_98426.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7OF1_001 | No text annotation | ||
| HL_7OF1_002 | No text annotation | ||
| HL_7OF1_003 | No text annotation | ||
| HL_7OF1_004 | No text annotation | ||
| HL_7OF1_008 | No text annotation | ||
| HL_7OF1_009 | No text annotation | ||
| HL_7OF1_010 | No text annotation | ||
| HL_7OF1_011 | No text annotation | ||
| HL_7OF1_012 | No text annotation | ||
| HL_7OF1_014 | No text annotation | ||
| HL_7OF1_015 | No text annotation | ||
| HL_7OF1_016 | No text annotation | ||
| HL_7OF1_017 | GNRA | ||
| HL_7OF1_018 | No text annotation | ||
| HL_7OF1_019 | No text annotation | ||
| HL_7OF1_020 | No text annotation | ||
| HL_7OF1_021 | No text annotation | ||
| HL_7OF1_022 | No text annotation | ||
| HL_7OF1_023 | No text annotation | ||
| HL_7OF1_024 | No text annotation | ||
| HL_7OF1_025 | No text annotation | ||
| HL_7OF1_026 | No text annotation | ||
| HL_7OF1_027 | No text annotation | ||
| HL_7OF1_028 | No text annotation | ||
| HL_7OF1_029 | No text annotation | ||
| HL_7OF1_030 | No text annotation | ||
| HL_7OF1_031 | No text annotation | ||
| HL_7OF1_032 | No text annotation | ||
| HL_7OF1_033 | No text annotation | ||
| HL_7OF1_034 | No text annotation | ||
| HL_7OF1_035 | No text annotation | ||
| HL_7OF1_036 | No text annotation | ||
| HL_7OF1_037 | No text annotation | ||
| HL_7OF1_038 | No text annotation | ||
| HL_7OF1_039 | No text annotation | ||
| HL_7OF1_040 | No text annotation | ||
| HL_7OF1_041 | No text annotation | ||
| HL_7OF1_042 | GNRA with one bulged base | ||
| HL_7OF1_043 | UNCG | ||
| HL_7OF1_044 | No text annotation | ||
| HL_7OF1_045 | No text annotation | ||
| HL_7OF1_046 | No text annotation | ||
| HL_7OF1_047 | No text annotation | ||
| HL_7OF1_048 | Other HL | ||
| HL_7OF1_049 | No text annotation | ||
| HL_7OF1_050 | No text annotation | ||
| HL_7OF1_051 | No text annotation | ||
| HL_7OF1_052 | No text annotation | ||
| HL_7OF1_053 | No text annotation | ||
| HL_7OF1_054 | No text annotation | ||
| HL_7OF1_055 | No text annotation | ||
| HL_7OF1_056 | No text annotation | ||
| HL_7OF1_057 | GNRA | ||
| HL_7OF1_058 | GNRA | ||
| HL_7OF1_059 | No text annotation | ||
| HL_7OF1_060 | No text annotation | ||
| HL_7OF1_062 | No text annotation | ||
| HL_7OF1_063 | No text annotation | ||
| HL_7OF1_064 | No text annotation | ||
| HL_7OF1_065 | No text annotation | ||
| HL_7OF1_066 | No text annotation | ||
| HL_7OF1_067 | No text annotation | ||
| HL_7OF1_068 | No text annotation | ||
| HL_7OF1_069 | GNRA |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7OF1_013 | 1/1/337:339, 1/2/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_37497.2 | |
| IL_7OF1_014 | 1/1/376:379, 1/1/390:403 | No text annotation Not in a motif group | homologous IL_5TBW_014 IL_60992.6 | |
| IL_7OF1_015 | 1/1/404:410, 1/2/13:19 | No text annotation Not in a motif group | homologous IL_8C3A_016 IL_66414.6 | |
| IL_7OF1_018 | 1/1/512:513, 1/1/577:579 | No text annotation Not in a motif group | homologous IL_8C3A_020 IL_37497.2 | |
| IL_7OF1_019 | 1/1/517:525, 1/1/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_7OF1_020 | 1/1/531:538, 1/1/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_7OF1_022 | 1/1/680:684, 1/1/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_7OF1_034 | 1/1/969:970, 1/1/1111:1113 | No text annotation Not in a motif group | homologous IL_8C3A_038 IL_76488.2 | |
| IL_7OF1_036 | 1/1/983:985, 1/1/1099:1100 | No text annotation Not in a motif group | homologous IL_8C3A_040 IL_00225.2 | |
| IL_7OF1_038 | 1/1/1120:1122, 1/1/1136:1138 | No text annotation Not in a motif group | homologous IL_8C3A_049 IL_95997.1 | |
| IL_7OF1_039 | 1/1/1167:1171, 1/1/1328:1332 | No text annotation Not in a motif group | homologous IL_8C3A_051 IL_89002.2 | |
| IL_7OF1_040 | 1/1/1173:1180, 1/1/1325:1326 | No text annotation Not in a motif group | homologous IL_8C3A_052 IL_15861.7 | |
| IL_7OF1_041 | 1/1/1180:1182, 1/1/1324:1325 | Single bulged U Not in a motif group | geometric IL_7A0S_035 IL_83039.13 | |
| IL_7OF1_048 | 1/1/1376:1378, 1/1/1428:1431 | No text annotation Not in a motif group | homologous IL_8C3A_061 IL_52767.2 | |
| IL_7OF1_049 | 1/1/1385:1387, 1/1/1420:1421 | Single bulged A Not in a motif group | homologous IL_5TBW_058 IL_37497.2 | |
| IL_7OF1_097 | 1/1/3158:3160, 1/1/3290:3293 | No text annotation Not in a motif group | geometric IL_4WSM_372 IL_33061.1 | |
| IL_7OF1_098 | 1/1/3164:3166, 1/1/3284:3286 | No text annotation Not in a motif group | homologous IL_8C3A_130 IL_95997.1 | |
| IL_7OF1_100 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A Not in a motif group | geometric IL_5TBW_123 IL_37497.2 | |
| IL_7OF1_101 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation Not in a motif group | homologous IL_5TBW_124 IL_15174.1 | |
| IL_7OF1_102 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U Not in a motif group | geometric IL_5TBW_125 IL_83039.13 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7OF1_001 | No text annotation | ||
| IL_7OF1_002 | No text annotation | ||
| IL_7OF1_003 | Single bulged U | ||
| IL_7OF1_004 | No text annotation | ||
| IL_7OF1_005 | tSH-tHW-tHH-tHS | ||
| IL_7OF1_006 | No text annotation | ||
| IL_7OF1_007 | No text annotation | ||
| IL_7OF1_008 | No text annotation | ||
| IL_7OF1_009 | Single stack bend | ||
| IL_7OF1_010 | No text annotation | ||
| IL_7OF1_011 | Major groove platform | ||
| IL_7OF1_012 | No text annotation | ||
| IL_7OF1_016 | No text annotation | ||
| IL_7OF1_017 | No text annotation | ||
| IL_7OF1_021 | No text annotation | ||
| IL_7OF1_023 | No text annotation | ||
| IL_7OF1_024 | No text annotation | ||
| IL_7OF1_025 | Tandem non-canonical cWW pairs | ||
| IL_7OF1_026 | No text annotation | ||
| IL_7OF1_027 | No text annotation | ||
| IL_7OF1_028 | No text annotation | ||
| IL_7OF1_029 | Single bulged G | ||
| IL_7OF1_030 | No text annotation | ||
| IL_7OF1_031 | Major groove platform with extra cWW | ||
| IL_7OF1_032 | Single bulged U | ||
| IL_7OF1_033 | Multiple bulged bases | ||
| IL_7OF1_035 | No text annotation | ||
| IL_7OF1_037 | No text annotation | ||
| IL_7OF1_042 | No text annotation | ||
| IL_7OF1_043 | No text annotation | ||
| IL_7OF1_044 | Single bulged U | ||
| IL_7OF1_045 | Kink-turn | ||
| IL_7OF1_046 | No text annotation | ||
| IL_7OF1_047 | No text annotation | ||
| IL_7OF1_050 | Kink-turn | ||
| IL_7OF1_051 | Single bulged A | ||
| IL_7OF1_052 | No text annotation | ||
| IL_7OF1_053 | C-loop | ||
| IL_7OF1_054 | UAA/GAN | ||
| IL_7OF1_055 | No text annotation | ||
| IL_7OF1_056 | Multiple bulged bases | ||
| IL_7OF1_057 | No text annotation | ||
| IL_7OF1_058 | Triple sheared | ||
| IL_7OF1_059 | No text annotation | ||
| IL_7OF1_060 | Single bulged C | ||
| IL_7OF1_061 | Single stack bend | ||
| IL_7OF1_062 | No text annotation | ||
| IL_7OF1_063 | No text annotation | ||
| IL_7OF1_064 | Kink-turn | ||
| IL_7OF1_065 | No text annotation | ||
| IL_7OF1_066 | No text annotation | ||
| IL_7OF1_067 | Major groove platform; stack outside cWW | ||
| IL_7OF1_068 | No text annotation | ||
| IL_7OF1_069 | No text annotation | ||
| IL_7OF1_070 | No text annotation | ||
| IL_7OF1_071 | No text annotation | ||
| IL_7OF1_072 | No text annotation | ||
| IL_7OF1_073 | Kink-turn related | ||
| IL_7OF1_074 | No text annotation | ||
| IL_7OF1_075 | Major groove outside cWW, minor groove, intercalation pocket | ||
| IL_7OF1_076 | No text annotation | ||
| IL_7OF1_077 | No text annotation | ||
| IL_7OF1_078 | No text annotation | ||
| IL_7OF1_079 | No text annotation | ||
| IL_7OF1_080 | Minor groove platform | ||
| IL_7OF1_081 | Isolated tHS basepair with bulges | ||
| IL_7OF1_082 | No text annotation | ||
| IL_7OF1_083 | Single stack bend with bulge | ||
| IL_7OF1_084 | Major groove platform | ||
| IL_7OF1_085 | Isolated non-canonical cWW with bulges | ||
| IL_7OF1_086 | No text annotation | ||
| IL_7OF1_087 | No text annotation | ||
| IL_7OF1_088 | No text annotation | ||
| IL_7OF1_089 | No text annotation | ||
| IL_7OF1_090 | No text annotation | ||
| IL_7OF1_091 | No text annotation | ||
| IL_7OF1_092 | No text annotation | ||
| IL_7OF1_093 | No text annotation | ||
| IL_7OF1_094 | No text annotation | ||
| IL_7OF1_095 | No text annotation | ||
| IL_7OF1_096 | No text annotation | ||
| IL_7OF1_099 | No text annotation | ||
| IL_7OF1_103 | No text annotation | ||
| IL_7OF1_104 | No text annotation | ||
| IL_7OF1_105 | Tandem non-canonical cWW pairs | ||
| IL_7OF1_106 | Tandem non-canonical cWW pairs | ||
| IL_7OF1_107 | Single bulged U | ||
| IL_7OF1_108 | Single bulged U | ||
| IL_7OF1_109 | No text annotation | ||
| IL_7OF1_110 | No text annotation | ||
| IL_7OF1_111 | No text annotation | ||
| IL_7OF1_112 | tWS-tSW | ||
| IL_7OF1_113 | Isolated non-canonical cWW with bulges | ||
| IL_7OF1_114 | Single bulged U | ||
| IL_7OF1_115 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_7OF1_116 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7OF1_003 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA | |
| J3_7OF1_006 | 1/1/986:987, 1/1/1062:1066, 1/1/1092:1098 | No text annotation Not in a motif group | homologous J3_5TBW_006 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7OF1_001 | No text annotation | ||
| J3_7OF1_002 | No text annotation | ||
| J3_7OF1_004 | No text annotation | ||
| J3_7OF1_005 | No text annotation | ||
| J3_7OF1_007 | No text annotation | ||
| J3_7OF1_008 | No text annotation | ||
| J3_7OF1_009 | No text annotation | ||
| J3_7OF1_010 | No text annotation | ||
| J3_7OF1_011 | No text annotation | ||
| J3_7OF1_012 | No text annotation | ||
| J3_7OF1_013 | No text annotation | ||
| J3_7OF1_014 | No text annotation | ||
| J3_7OF1_015 | No text annotation |
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