Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7S1G_0011/A/11:24No text annotation
Not in a motif group
homologous
HL_4WT8_218
NA
HL_7S1G_0021/A/31:39tRNA anticodon loop
Not in a motif group
homologous
HL_4V90_033
HL_53597.2
HL_7S1G_0031/A/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_6JXM_003
HL_22280.1
HL_7S1G_0041/C/12:22No text annotation
Not in a motif group
homologous
HL_5J7L_001
HL_89881.2
HL_7S1G_0051/C/81:88No text annotation
Not in a motif group
HL_7S1G_0061/C/158:163GNRA
Not in a motif group
homologous
HL_5J7L_003
HL_42097.1
HL_7S1G_0071/C/186:191GNRA
Not in a motif group
homologous
HL_5J7L_004
HL_42097.1
HL_7S1G_0081/C/208:212No text annotation
Not in a motif group
HL_7S1G_0091/C/259:267No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_69023.2
HL_7S1G_0101/C/296:301GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_42097.1
HL_7S1G_0111/C/320:333No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_7S1G_0121/C/342:347UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_7S1G_0131/C/379:384GNRA
Not in a motif group
homologous
HL_5J7L_010
HL_42097.1
HL_7S1G_0141/C/419:424UNCG
Not in a motif group
homologous
HL_4LFB_011
HL_03562.2
HL_7S1G_0151/C/462:470No text annotation
Not in a motif group
homologous
HL_5J7L_012
HL_84085.2
HL_7S1G_0161/C/522:527No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_75407.1
HL_7S1G_0171/C/617:623No text annotation
Not in a motif group
homologous
HL_5J7L_014
HL_26881.1
HL_7S1G_0181/C/689:698No text annotation
Not in a motif group
homologous
HL_5J7L_015
HL_12326.1
HL_7S1G_0191/C/726:731Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_7S1G_0201/C/786:796No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_7S1G_0211/C/841:844No text annotation
Not in a motif group
HL_7S1G_0221/C/862:867GNRA
Not in a motif group
homologous
HL_5J7L_019
HL_42097.1
HL_7S1G_0231/C/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_7S1G_0241/C/963:972No text annotation
Not in a motif group
homologous
HL_5J7L_021
NA
HL_7S1G_0251/C/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_7S1G_0261/C/1028:1033No text annotation
Not in a motif group
geometric
HL_5TBW_006
HL_98984.2
HL_7S1G_0271/C/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_42097.1
HL_7S1G_0281/C/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_7S1G_0291/C/1134:1140No text annotation
Not in a motif group
homologous
HL_5J7L_025
HL_03562.2
HL_7S1G_0301/C/1165:1171No text annotation
Not in a motif group
homologous
HL_5J7L_026
HL_90617.2
HL_7S1G_0311/C/1265:1270GNRA
Not in a motif group
homologous
HL_5J7L_027
HL_42097.1
HL_7S1G_0321/C/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_7S1G_0331/C/1356:1366No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_7S1G_0341/C/1449:1454UNCG
Not in a motif group
homologous
HL_5J7L_030
HL_03562.2
HL_7S1G_0351/C/1515:1520No text annotation
Not in a motif group
homologous
HL_6CZR_103
NA
HL_7S1G_0361/I/59:68No text annotation
Not in a motif group
homologous
HL_5J7L_134
HL_18177.1
HL_7S1G_0371/I/87:95No text annotation
Not in a motif group
homologous
HL_5J7L_135
HL_84193.1
HL_7S1G_0381/I/123:128No text annotation
Not in a motif group
homologous
HL_5J7L_136
HL_75407.1
HL_7S1G_0391/I/137:142UNCG
Not in a motif group
geometric
HL_4AY2_001
HL_03562.2
HL_7S1G_0401/I/158:168No text annotation
Not in a motif group
homologous
HL_5J7L_138
HL_81820.1
HL_7S1G_0411/I/194:201No text annotation
Not in a motif group
geometric
HL_4WF9_006
HL_06192.2
HL_7S1G_0421/I/225:230No text annotation
Not in a motif group
homologous
HL_5J7L_140
HL_27930.1
HL_7S1G_0431/I/246:252No text annotation
Not in a motif group
homologous
HL_5J7L_141
HL_67216.7
HL_7S1G_0441/I/305:312T-loop with 1 bulged base
Not in a motif group
homologous
HL_5J7L_142
HL_89380.2
HL_7S1G_0451/I/319:323No text annotation
Not in a motif group
homologous
HL_5J7L_143
HL_75407.1
HL_7S1G_0461/I/327:335No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.8
HL_7S1G_0471/I/382:392No text annotation
Not in a motif group
homologous
HL_5J7L_145
HL_91503.4
HL_7S1G_0481/I/410:417No text annotation
Not in a motif group
homologous
HL_5J7L_146
HL_96598.1
HL_7S1G_0491/I/462:467GNRA
Not in a motif group
homologous
HL_4WF9_015
HL_42097.1
HL_7S1G_0501/I/487:493No text annotation
Not in a motif group
homologous
HL_5J7L_148
HL_42097.1
HL_7S1G_0511/I/543:550No text annotation
Not in a motif group
HL_7S1G_0521/I/566:575T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_150
HL_89380.2
HL_7S1G_0531/I/611:617No text annotation
Not in a motif group
homologous
HL_5J7L_151
HL_90617.2
HL_7S1G_0541/I/629:634GNRA
Not in a motif group
homologous
HL_5J7L_152
HL_42097.1
HL_7S1G_0551/I/641:647No text annotation
Not in a motif group
homologous
HL_5J7L_153
HL_77805.2
HL_7S1G_0561/I/712:719No text annotation
Not in a motif group
homologous
HL_5J7L_154
HL_84085.2
HL_7S1G_0571/I/744:753No text annotation
Not in a motif group
homologous
HL_5J7L_155
NA
HL_7S1G_0581/I/779:785No text annotation
Not in a motif group
homologous
HL_5J7L_156
HL_74322.1
HL_7S1G_0591/I/826:831No text annotation
Not in a motif group
homologous
HL_4WF9_025
HL_64365.1
HL_7S1G_0611/I/954:963No text annotation
Not in a motif group
homologous
HL_5J7L_159
NA
HL_7S1G_0621/I/978:985No text annotation
Not in a motif group
homologous
HL_5J7L_160
HL_64430.2
HL_7S1G_0631/I/1064:1074No text annotation
Not in a motif group
homologous
HL_5J7L_161
HL_07145.1
HL_7S1G_0641/I/1092:1099No text annotation
Not in a motif group
homologous
HL_7RQB_030
NA
HL_7S1G_0651/I/1172:1177No text annotation
Not in a motif group
HL_7S1G_0661/I/1222:1227Other HL
Not in a motif group
homologous
HL_5J7L_164
HL_87030.2
HL_7S1G_0671/I/1281:1289T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_165
HL_89380.2
HL_7S1G_0681/I/1324:1330No text annotation
Not in a motif group
homologous
HL_5J7L_166
HL_46680.1
HL_7S1G_0691/I/1363:1368Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_87030.2
HL_7S1G_0701/I/1389:1398No text annotation
Not in a motif group
homologous
HL_5J7L_168
HL_69023.2
HL_7S1G_0711/I/1451:1459No text annotation
Not in a motif group
homologous
HL_5J7L_169
HL_53837.1
HL_7S1G_0721/I/1492:1498No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_46680.1
HL_7S1G_0731/I/1533:1538UNCG
Not in a motif group
homologous
HL_5J7L_171
HL_03562.2
HL_7S1G_0741/I/1565:1568No text annotation
Not in a motif group
homologous
HL_7RQB_039
HL_38927.2
HL_7S1G_0751/I/1612:1619No text annotation
Not in a motif group
HL_7S1G_0761/I/1630:1636GNRA with one bulged base
Not in a motif group
homologous
HL_5J7L_174
HL_42097.1
HL_7S1G_0771/I/1691:1696No text annotation
Not in a motif group
homologous
HL_7RQB_042
HL_03562.2
HL_7S1G_0781/I/1728:1731No text annotation
Not in a motif group
homologous
HL_5J7L_176
HL_98426.1
HL_7S1G_0791/I/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_7S1G_0801/I/1777:1787No text annotation
Not in a motif group
homologous
HL_7RQB_045
HL_43613.5
HL_7S1G_0811/I/1806:1811No text annotation
Not in a motif group
homologous
HL_5J7L_179
HL_42097.1
HL_7S1G_0821/I/1868:1873Other HL
Not in a motif group
homologous
HL_5J7L_180
HL_42097.1
HL_7S1G_0831/I/1910:1920No text annotation
Not in a motif group
homologous
HL_5J7L_181
NA
HL_7S1G_0841/I/1949:1957No text annotation
Not in a motif group
homologous
HL_5J7L_182
HL_51824.1
HL_7S1G_0861/I/2143:2148No text annotation
Not in a motif group
homologous
HL_5J7L_184
NA
HL_7S1G_0871/I/2209:2215No text annotation
Not in a motif group
homologous
HL_5J7L_185
HL_16845.6
HL_7S1G_0881/I/2248:2256No text annotation
Not in a motif group
homologous
HL_7RQB_053
NA
HL_7S1G_0891/I/2264:2276No text annotation
Not in a motif group
homologous
HL_7RQB_054
HL_19870.6
HL_7S1G_0901/I/2303:2313No text annotation
Not in a motif group
homologous
HL_7RQB_055
HL_11805.3
HL_7S1G_0911/I/2324:2331No text annotation
Not in a motif group
homologous
HL_5J7L_189
HL_12078.2
HL_7S1G_0921/I/2356:2361Other HL
Not in a motif group
homologous
HL_5J7L_190
HL_87030.2
HL_7S1G_0931/I/2374:2379GNRA
Not in a motif group
homologous
HL_5J7L_191
HL_42097.1
HL_7S1G_0941/I/2404:2413No text annotation
Not in a motif group
homologous
HL_5J7L_192
HL_30784.2
HL_7S1G_0951/I/2471:2479No text annotation
Not in a motif group
homologous
HL_4WF9_056
HL_06192.2
HL_7S1G_0961/I/2528:2535No text annotation
Not in a motif group
homologous
HL_5J7L_194
HL_88526.2
HL_7S1G_0971/I/2551:2557No text annotation
Not in a motif group
homologous
HL_5J7L_195
NA
HL_7S1G_0981/I/2594:2599GNRA
Not in a motif group
homologous
HL_5J7L_196
HL_42097.1
HL_7S1G_0991/I/2658:2663No text annotation
Not in a motif group
geometric
HL_7RQB_064
HL_42097.1
HL_7S1G_1001/I/2701:2706Ribsomal LSU H95
Not in a motif group
homologous
HL_5J7L_198
HL_46680.1
HL_7S1G_1011/I/2745:2759No text annotation
Not in a motif group
homologous
HL_5J7L_199
HL_56677.7
HL_7S1G_1021/I/2795:2801Other HL
Not in a motif group
homologous
HL_5J7L_200
HL_34168.2
HL_7S1G_1031/I/2819:2827No text annotation
Not in a motif group
homologous
HL_5J7L_201
HL_27930.1
HL_7S1G_1041/I/2856:2861Other HL
Not in a motif group
homologous
HL_5J7L_202
HL_42097.1
HL_7S1G_1051/J/38:44No text annotation
Not in a motif group
homologous
HL_5J7L_203
HL_87939.1
HL_7S1G_1061/J/86:90No text annotation
Not in a motif group
homologous
HL_5J7L_204
HL_38927.2

Problematic loops

#loop idProblemSequence
HL_7S1G_060No text annotation
HL_7S1G_085No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7S1G_0011/C/30:32,
1/C/552:553
Single bulged G
Not in a motif group
homologous
IL_6CZR_113
IL_00225.2
IL_7S1G_0021/C/44:45,
1/C/396:398
Single bulged A
Not in a motif group
homologous
IL_5J7L_002
IL_37497.2
IL_7S1G_0031/C/47:52,
1/C/359:361
No text annotation
Not in a motif group
geometric
IL_5J7L_003
IL_11178.1
IL_7S1G_0041/C/54:56,
1/C/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_93353.1
IL_7S1G_0051/C/63:66,
1/C/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_005
IL_76389.1
IL_7S1G_0061/C/67:69,
1/C/99:102
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_65006.1
IL_7S1G_0071/C/70:73,
1/C/97:98
Minor groove platform
Not in a motif group
homologous
IL_5J7L_007
IL_15052.1
IL_7S1G_0081/C/75:76,
1/C/93:95
Major groove intercalation
Not in a motif group
geometric
IL_4WF9_106
IL_16396.2
IL_7S1G_0091/C/128:131,
1/C/231:233
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_009
IL_82068.2
IL_7S1G_0101/C/132:136,
1/C/227:230
Minor groove platform related
Not in a motif group
homologous
IL_5J7L_010
IL_58764.3
IL_7S1G_0111/C/144:146,
1/C/176:178
Isolated cWH basepair
Not in a motif group
homologous
IL_5J7L_011
IL_51629.2
IL_7S1G_0121/C/147:153,
1/C/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_7S1G_0131/C/203:208,
1/C/212:214
No text annotation
Not in a motif group
IL_7S1G_0141/C/242:247,
1/C/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_5J7L_014
IL_45067.2
IL_7S1G_0151/C/249:252,
1/C/274:275
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_48100.2
IL_7S1G_0161/C/292:293,
1/C/304:308
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_7S1G_0171/C/367:369,
1/C/392:393
Single bulged U
Not in a motif group
geometric
IL_5J7L_017
IL_83039.13
IL_7S1G_0181/C/371:375,
1/C/389:390
C-loop
Not in a motif group
homologous
IL_5J7L_018
IL_75255.1
IL_7S1G_0191/C/375:376,
1/C/387:389
Single bulged G
Not in a motif group
geometric
IL_5J7L_019
IL_00225.2
IL_7S1G_0201/C/409:416,
1/C/427:433
No text annotation
Not in a motif group
homologous
IL_5J7L_020
IL_28026.1
IL_7S1G_0211/C/440:442,
1/C/492:497
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_22248.1
IL_7S1G_0221/C/446:450,
1/C/483:488
tSH-tHW-tWW
Not in a motif group
geometric
IL_5J7L_022
IL_88269.3
IL_7S1G_0231/C/450:455,
1/C/477:483
No text annotation
Not in a motif group
homologous
IL_5J7L_023
IL_70801.1
IL_7S1G_0241/C/504:511,
1/C/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_024
IL_15861.7
IL_7S1G_0251/C/515:521,
1/C/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_7S1G_0261/C/569:575,
1/C/880:881
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_7S1G_0271/C/580:584,
1/C/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_027
IL_17136.1
IL_7S1G_0281/C/594:596,
1/C/644:645
Major groove platform
Not in a motif group
homologous
IL_5J7L_028
IL_27635.1
IL_7S1G_0291/C/597:598,
1/C/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4LFB_025
IL_09061.6
IL_7S1G_0301/C/605:612,
1/C/628:633
No text annotation
Not in a motif group
homologous
IL_5J7L_030
IL_78349.1
IL_7S1G_0311/C/654:655,
1/C/751:754
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_4LFB_027
IL_50694.2
IL_7S1G_0321/C/659:660,
1/C/745:747
Single stack bend
Not in a motif group
homologous
IL_5J7L_032
IL_76488.2
IL_7S1G_0331/C/662:666,
1/C/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_71110.1
IL_7S1G_0341/C/684:688,
1/C/699:706
Kink-turn
Not in a motif group
homologous
IL_5J7L_035
IL_45067.2
IL_7S1G_0351/C/774:778,
1/C/804:805
Left turn
Not in a motif group
homologous
IL_4LFB_032
IL_29346.1
IL_7S1G_0361/C/779:783,
1/C/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_037
IL_17136.1
IL_7S1G_0371/C/840:841,
1/C/844:846
No text annotation
Not in a motif group
IL_7S1G_0381/C/887:894,
1/C/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_5J7L_038
IL_24606.2
IL_7S1G_0391/C/922:923,
1/C/1393:1395
Single bulged A
Not in a motif group
homologous
IL_5J7L_039
IL_37497.2
IL_7S1G_0401/C/925:927,
1/C/1390:1391
Single bulged G
Not in a motif group
homologous
IL_5J7L_040
IL_00225.2
IL_7S1G_0411/C/933:935,
1/C/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_5J7L_041
IL_47078.1
IL_7S1G_0421/C/953:954,
1/C/1226:1228
No text annotation
Not in a motif group
homologous
IL_6CZR_150
NA
IL_7S1G_0431/C/993:997,
1/C/1044:1045
Minor groove platform
Not in a motif group
geometric
IL_5J7L_043
IL_47078.1
IL_7S1G_0441/C/998:999,
1/C/1041:1043
Single stack bend
Not in a motif group
homologous
IL_5J7L_044
IL_76488.2
IL_7S1G_0451/C/1048:1050,
1/C/1208:1209
Single bulged U
Not in a motif group
homologous
IL_5J7L_046
IL_83039.13
IL_7S1G_0461/C/1052:1056,
1/C/1204:1206
Isolated cWS basepair
Not in a motif group
homologous
IL_4LFB_044
IL_76319.2
IL_7S1G_0471/C/1057:1058,
1/C/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_93353.1
IL_7S1G_0481/C/1060:1061,
1/C/1195:1197
Single bulged A
Not in a motif group
geometric
IL_5J7L_049
IL_37497.2
IL_7S1G_0491/C/1061:1063,
1/C/1193:1195
No text annotation
Not in a motif group
geometric
IL_5J7L_050
IL_95997.1
IL_7S1G_0501/C/1124:1128,
1/C/1144:1149
No text annotation
Not in a motif group
homologous
IL_5J7L_051
IL_93211.1
IL_7S1G_0511/C/1129:1132,
1/C/1142:1143
Minor groove platform
Not in a motif group
homologous
IL_5J7L_052
IL_15052.1
IL_7S1G_0521/C/1158:1161,
1/C/1175:1181
No text annotation
Not in a motif group
homologous
IL_4LFB_050
IL_42032.1
IL_7S1G_0531/C/1247:1253,
1/C/1284:1290
No text annotation
Not in a motif group
homologous
IL_5J7L_054
IL_09129.1
IL_7S1G_0541/C/1255:1258,
1/C/1277:1282
No text annotation
Not in a motif group
homologous
IL_4LFB_052
IL_84205.1
IL_7S1G_0551/C/1259:1263,
1/C/1272:1276
Triple sheared
Not in a motif group
homologous
IL_5J7L_056
IL_56467.8
IL_7S1G_0561/C/1303:1308,
1/C/1329:1334
No text annotation
Not in a motif group
homologous
IL_5J7L_057
IL_19954.2
IL_7S1G_0571/C/1399:1401,
1/C/1501:1504
No text annotation
Not in a motif group
homologous
IL_5J7L_058
IL_36143.3
IL_7S1G_0581/C/1401:1404,
1/C/1497:1501
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_7S1G_0591/C/1405:1407,
1/C/1494:1496
No text annotation
Not in a motif group
geometric
IL_5MWI_002
IL_95997.1
IL_7S1G_0601/C/1407:1409,
1/C/1491:1494
No text annotation
Not in a motif group
IL_7S1G_0611/C/1412:1414,
1/C/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_7S1G_0621/C/1416:1419,
1/C/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.9
IL_7S1G_0631/C/1430:1435,
1/C/1466:1470
Triple sheared related
Not in a motif group
homologous
IL_5J7L_063
IL_64879.2
IL_7S1G_0641/C/1440:1442,
1/C/1460:1461
Minor groove platform
Not in a motif group
homologous
IL_5J7L_064
IL_42622.2
IL_7S1G_0651/C/1445:1448,
1/C/1455:1457
No text annotation
Not in a motif group
homologous
IL_5J7L_065
IL_02284.5
IL_7S1G_0661/I/24:30,
1/I/510:516
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_245
IL_66414.6
IL_7S1G_0671/I/36:37,
1/I/442:444
Single bulged A
Not in a motif group
homologous
IL_7RQB_002
IL_37497.2
IL_7S1G_0681/I/43:44,
1/I/434:436
Minor groove platform
Not in a motif group
homologous
IL_5J7L_247
IL_42622.2
IL_7S1G_0691/I/81:85,
1/I/97:105
No text annotation
Not in a motif group
homologous
IL_5J7L_248
IL_93699.1
IL_7S1G_0701/I/183:184,
1/I/212:214
Single stack bend
Not in a motif group
homologous
IL_5J7L_249
IL_76488.2
IL_7S1G_0711/I/188:194,
1/I/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_250
IL_04346.7
IL_7S1G_0721/I/239:245,
1/I/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_251
IL_76042.2
IL_7S1G_0731/I/269:271,
1/I/366:370
No text annotation
Not in a motif group
homologous
IL_5J7L_252
IL_47972.1
IL_7S1G_0741/I/274:281,
1/I/359:363
No text annotation
Not in a motif group
homologous
IL_5J7L_253
IL_77870.1
IL_7S1G_0751/I/293:295,
1/I/343:347
No text annotation
Not in a motif group
homologous
IL_5J7L_254
IL_69440.1
IL_7S1G_0761/I/481:484,
1/I/496:509
No text annotation
Not in a motif group
geometric
IL_5J7L_255
IL_60992.6
IL_7S1G_0771/I/536:539,
1/I/554:557
Double sheared
Not in a motif group
homologous
IL_5J7L_256
IL_09705.9
IL_7S1G_0781/I/564:566,
1/I/575:577
No text annotation
Not in a motif group
geometric
IL_5J7L_257
IL_95997.1
IL_7S1G_0791/I/606:610,
1/I/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_5J7L_258
IL_17136.1
IL_7S1G_0801/I/672:674,
1/I/806:808
No text annotation
Not in a motif group
homologous
IL_7RQB_017
IL_95997.1
IL_7S1G_0811/I/674:678,
1/I/799:806
tHW-tHW cross-strand stack
Not in a motif group
geometric
IL_5J7L_260
IL_17470.6
IL_7S1G_0821/I/697:698,
1/I/763:765
Single bulged A
Not in a motif group
geometric
IL_5J7L_261
IL_37497.2
IL_7S1G_0831/I/702:703,
1/I/728:730
Single bulged G
Not in a motif group
geometric
IL_5J7L_262
IL_00225.2
IL_7S1G_0841/I/703:707,
1/I/724:728
Triple sheared
Not in a motif group
homologous
IL_4WF9_024
IL_56467.8
IL_7S1G_0851/I/738:740,
1/I/757:758
Major groove platform
Not in a motif group
homologous
IL_5J7L_264
IL_27635.1
IL_7S1G_0861/I/775:777,
1/I/787:791
Multiple bulged bases
Not in a motif group
geometric
IL_5J7L_265
IL_90991.6
IL_7S1G_0871/I/844:847,
1/I/933:934
Other IL
Not in a motif group
homologous
IL_5J7L_267
IL_92001.1
IL_7S1G_0881/I/847:848,
1/I/930:933
Stack outside cWW
Not in a motif group
geometric
IL_5J7L_268
IL_37629.1
IL_7S1G_0891/I/850:851,
1/I/926:928
Single stack bend
Not in a motif group
homologous
IL_5J7L_269
IL_76488.2
IL_7S1G_0901/I/856:862,
1/I/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
homologous
IL_5J7L_270
IL_93830.3
IL_7S1G_0911/I/862:863,
1/I/913:915
Single bulged G
Not in a motif group
geometric
IL_5J7L_271
IL_00225.2
IL_7S1G_0921/I/864:868,
1/I/909:912
C-loop
Not in a motif group
homologous
IL_5J7L_272
IL_63596.6
IL_7S1G_0931/I/870:872,
1/I/905:907
No text annotation
Not in a motif group
homologous
IL_5J7L_273
IL_95997.1
IL_7S1G_0941/I/875:879,
1/I/898:902
Triple sheared
Not in a motif group
homologous
IL_5J7L_274
IL_56467.8
IL_7S1G_0951/I/880:882,
1/I/894:897
Major groove platform with extra cWW
Not in a motif group
geometric
IL_3PDR_004
IL_18471.2
IL_7S1G_0961/I/994:996,
1/I/1159:1160
Single bulged C
Not in a motif group
homologous
IL_5J7L_276
IL_61258.12
IL_7S1G_0971/I/998:1002,
1/I/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_4WF9_036
IL_89002.2
IL_7S1G_0981/I/1004:1011,
1/I/1150:1151
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_278
IL_15861.7
IL_7S1G_0991/I/1011:1013,
1/I/1149:1150
Single bulged U
Not in a motif group
geometric
IL_5J7L_279
IL_83039.13
IL_7S1G_1001/I/1018:1024,
1/I/1140:1144
No text annotation
Not in a motif group
geometric
IL_5J7L_280
IL_57188.3
IL_7S1G_1011/I/1024:1030,
1/I/1124:1140
No text annotation
Not in a motif group
geometric
IL_5J7L_281
IL_50715.1
IL_7S1G_1021/I/1031:1034,
1/I/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_282
IL_82068.2
IL_7S1G_1031/I/1038:1041,
1/I/1114:1117
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_283
IL_30621.2
IL_7S1G_1041/I/1043:1051,
1/I/1108:1112
Kink-turn
Not in a motif group
homologous
IL_5J7L_284
IL_90538.4
IL_7S1G_1051/I/1059:1062,
1/I/1076:1079
No text annotation
Not in a motif group
homologous
IL_6PRV_001
IL_23544.2
IL_7S1G_1061/I/1087:1091,
1/I/1100:1102
Major groove platform with extra cWW
Not in a motif group
geometric
IL_1MMS_002
IL_05564.2
IL_7S1G_1071/I/1196:1198,
1/I/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_5J7L_286
IL_52767.2
IL_7S1G_1081/I/1202:1206,
1/I/1240:1243
No text annotation
Not in a motif group
homologous
IL_5J7L_287
IL_91920.1
IL_7S1G_1091/I/1208:1215,
1/I/1234:1238
Kink-turn
Not in a motif group
homologous
IL_5J7L_288
IL_70923.2
IL_7S1G_1101/I/1262:1269,
1/I/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_289
IL_04346.7
IL_7S1G_1111/I/1310:1313,
1/I/1603:1604
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_5J7L_290
IL_50694.2
IL_7S1G_1121/I/1319:1323,
1/I/1331:1333
C-loop
Not in a motif group
homologous
IL_5J7L_291
IL_63596.6
IL_7S1G_1131/I/1351:1355,
1/I/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_5J7L_292
IL_89002.2
IL_7S1G_1141/I/1357:1361,
1/I/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_17136.1
IL_7S1G_1151/I/1415:1416,
1/I/1582:1587
No text annotation
Not in a motif group
homologous
IL_5J7L_294
IL_90348.1
IL_7S1G_1161/I/1417:1421,
1/I/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_5J7L_295
IL_89002.2
IL_7S1G_1171/I/1432:1435,
1/I/1557:1561
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_296
IL_55178.1
IL_7S1G_1181/I/1437:1440,
1/I/1551:1555
tSH-tHW
Not in a motif group
homologous
IL_5J7L_297
IL_04059.1
IL_7S1G_1191/I/1450:1451,
1/I/1459:1461
Single bulged U
Not in a motif group
geometric
IL_5J7L_298
IL_83039.13
IL_7S1G_1201/I/1468:1471,
1/I/1520:1524
No text annotation
Not in a motif group
homologous
IL_5J7L_299
IL_68574.2
IL_7S1G_1211/I/1474:1478,
1/I/1513:1517
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_300
IL_38862.1
IL_7S1G_1221/I/1481:1482,
1/I/1507:1510
No text annotation
Not in a motif group
homologous
IL_5J7L_301
IL_67474.4
IL_7S1G_1231/I/1489:1491,
1/I/1499:1500
Single bulged A
Not in a motif group
homologous
IL_5J7L_302
IL_37497.2
IL_7S1G_1241/I/1526:1529,
1/I/1542:1546
UAA/GAN variation
Not in a motif group
homologous
IL_5J7L_303
IL_07235.1
IL_7S1G_1251/I/1651:1656,
1/I/2004:2006
No text annotation
Not in a motif group
homologous
IL_5J7L_304
IL_12566.2
IL_7S1G_1261/I/1663:1665,
1/I/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_4WF9_063
IL_54997.7
IL_7S1G_1271/I/1666:1669,
1/I/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_066
IL_50694.2
IL_7S1G_1281/I/1669:1674,
1/I/1990:1993
Intercalated tWH
Not in a motif group
geometric
IL_4WF9_065
IL_82842.2
IL_7S1G_1291/I/1686:1691,
1/I/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_5J7L_308
IL_65969.2
IL_7S1G_1301/I/1712:1718,
1/I/1742:1746
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_309
IL_88269.3
IL_7S1G_1311/I/1720:1724,
1/I/1736:1740
Triple sheared
Not in a motif group
homologous
IL_5J7L_310
IL_56467.8
IL_7S1G_1321/I/1727:1728,
1/I/1731:1733
Single bulged C
Not in a motif group
geometric
IL_5J7L_311
IL_61258.12
IL_7S1G_1331/I/1770:1771,
1/I/1980:1982
Single bulged A
Not in a motif group
homologous
IL_5J7L_312
IL_37497.2
IL_7S1G_1341/I/1798:1804,
1/I/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_5J7L_313
IL_17069.3
IL_7S1G_1351/I/1837:1840,
1/I/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_314
IL_88739.1
IL_7S1G_1361/I/1841:1842,
1/I/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_16396.2
IL_7S1G_1371/I/1846:1849,
1/I/1893:1894
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_316
IL_09061.6
IL_7S1G_1381/I/1864:1867,
1/I/1874:1878
UAA/GAN related
Not in a motif group
homologous
IL_5J7L_317
IL_77691.1
IL_7S1G_1391/I/1933:1934,
1/I/1964:1967
Multiple bulged bases
Not in a motif group
geometric
IL_7RQB_076
IL_59677.2
IL_7S1G_1401/I/1934:1945,
1/I/1961:1964
No text annotation
Not in a motif group
homologous
IL_5J7L_319
NA
IL_7S1G_1411/I/2050:2052,
1/I/2617:2618
Major groove platform
Not in a motif group
homologous
IL_5J7L_320
IL_27635.1
IL_7S1G_1421/I/2054:2056,
1/I/2612:2615
No text annotation
Not in a motif group
homologous
IL_5J7L_321
IL_54678.5
IL_7S1G_1431/I/2064:2066,
1/I/2444:2446
No text annotation
Not in a motif group
homologous
IL_5J7L_322
NA
IL_7S1G_1441/I/2067:2070,
1/I/2441:2443
No text annotation
Not in a motif group
homologous
IL_5J7L_323
NA
IL_7S1G_1451/I/2070:2071,
1/I/2438:2441
Minor groove platform
Not in a motif group
geometric
IL_5TBW_094
IL_42622.2
IL_7S1G_1461/I/2081:2083,
1/I/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_5J7L_325
IL_38958.7
IL_7S1G_1471/I/2085:2087,
1/I/2232:2234
No text annotation
Not in a motif group
homologous
IL_5J7L_326
IL_95997.1
IL_7S1G_1481/I/2102:2110,
1/I/2179:2187
No text annotation
Not in a motif group
IL_7S1G_1491/I/2110:2120,
1/I/2178:2179
No text annotation
Not in a motif group
IL_7S1G_1501/I/2124:2127,
1/I/2161:2174
No text annotation
Not in a motif group
IL_7S1G_1511/I/2128:2136,
1/I/2155:2160
No text annotation
Not in a motif group
IL_7S1G_1521/I/2139:2141,
1/I/2150:2152
No text annotation
Not in a motif group
geometric
IL_6OL3_002
IL_95997.1
IL_7S1G_1531/I/2202:2204,
1/I/2220:2221
Single bulged U
Not in a motif group
homologous
IL_5J7L_331
IL_83039.13
IL_7S1G_1541/I/2350:2353,
1/I/2364:2367
Double sheared
Not in a motif group
homologous
IL_5J7L_333
IL_09705.9
IL_7S1G_1551/I/2400:2403,
1/I/2414:2416
Decoding loop related
Not in a motif group
geometric
IL_3C3Z_002
IL_64417.1
IL_7S1G_1561/I/2453:2455,
1/I/2496:2500
No text annotation
Not in a motif group
homologous
IL_5J7L_335
NA
IL_7S1G_1571/I/2456:2459,
1/I/2493:2495
Major groove platform with extra pair
Not in a motif group
geometric
IL_7RQB_093
IL_63450.2
IL_7S1G_1581/I/2459:2461,
1/I/2489:2493
Major groove minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_337
IL_92788.2
IL_7S1G_1591/I/2466:2470,
1/I/2480:2484
Triple sheared
Not in a motif group
homologous
IL_7A0S_087
IL_56467.8
IL_7S1G_1601/I/2507:2509,
1/I/2579:2582
No text annotation
Not in a motif group
homologous
IL_5J7L_339
NA
IL_7S1G_1611/I/2510:2512,
1/I/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5J7L_340
IL_90933.2
IL_7S1G_1621/I/2512:2513,
1/I/2571:2574
No text annotation
Not in a motif group
homologous
IL_5J7L_341
IL_71530.2
IL_7S1G_1631/I/2522:2523,
1/I/2540:2543
Minor groove platform with intercalation
Not in a motif group
homologous
IL_5J7L_342
IL_95601.3
IL_7S1G_1641/I/2588:2591,
1/I/2603:2606
No text annotation
Not in a motif group
homologous
IL_5J7L_343
NA
IL_7S1G_1651/I/2591:2592,
1/I/2601:2603
Single bulged A
Not in a motif group
geometric
IL_7RQB_101
IL_37497.2
IL_7S1G_1661/I/2636:2640,
1/I/2774:2782
No text annotation
Not in a motif group
homologous
IL_5J7L_345
IL_04638.1
IL_7S1G_1671/I/2652:2658,
1/I/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
homologous
IL_7A0S_094
IL_16458.1
IL_7S1G_1681/I/2680:2684,
1/I/2725:2727
C-loop
Not in a motif group
homologous
IL_5J7L_347
IL_63596.6
IL_7S1G_1691/I/2687:2691,
1/I/2718:2722
No text annotation
Not in a motif group
homologous
IL_5J7L_348
IL_08296.3
IL_7S1G_1701/I/2695:2696,
1/I/2711:2714
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_349
IL_71530.2
IL_7S1G_1711/I/2737:2742,
1/I/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_5J7L_350
IL_49767.5
IL_7S1G_1721/I/2806:2811,
1/I/2889:2892
No text annotation
Not in a motif group
homologous
IL_5J7L_351
IL_49460.2
IL_7S1G_1731/I/2838:2839,
1/I/2878:2880
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_352
IL_16396.2
IL_7S1G_1741/I/2843:2846,
1/I/2870:2874
Multiple bulged bases with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_353
IL_58764.3
IL_7S1G_1751/I/2847:2852,
1/I/2865:2869
No text annotation
Not in a motif group
homologous
IL_5J7L_354
IL_83162.5
IL_7S1G_1761/J/17:18,
1/J/65:67
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_355
IL_37497.2
IL_7S1G_1771/J/23:28,
1/J/56:60
No text annotation
Not in a motif group
homologous
IL_5J7L_356
IL_18472.2
IL_7S1G_1781/J/30:31,
1/J/51:54
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_357
IL_09061.6
IL_7S1G_1791/J/34:38,
1/J/44:48
Symmetric double minor groove platform
Not in a motif group
geometric
IL_7RQB_114
IL_58103.6
IL_7S1G_1801/J/71:79,
1/J/97:105
Bacterial 5S Loop E
Not in a motif group
homologous
IL_5J7L_359
IL_56455.3

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7S1G_0011/C/46:47,
1/C/361:367,
1/C/393:395
No text annotation
Not in a motif group
homologous
J3_5J7L_001
NA
J3_7S1G_0021/C/586:588,
1/C/651:654,
1/C/754:755
No text annotation
Not in a motif group
homologous
J3_5J7L_002
NA
J3_7S1G_0031/C/826:829,
1/C/857:861,
1/C/868:874
No text annotation
Not in a motif group
homologous
J3_5J7L_004
NA
J3_7S1G_0041/C/936:939,
1/C/1344:1350,
1/C/1372:1379
No text annotation
Not in a motif group
homologous
J3_4LFB_002
NA
J3_7S1G_0051/C/943:946,
1/C/1235:1237,
1/C/1337:1340
No text annotation
Not in a motif group
J3_7S1G_0061/C/955:962,
1/C/973:984,
1/C/1221:1225
No text annotation
Not in a motif group
J3_7S1G_0071/C/990:993,
1/C/1045:1047,
1/C/1210:1215
No text annotation
Not in a motif group
homologous
J3_4LFB_005
NA
J3_7S1G_0081/C/1003:1006,
1/C/1023:1028,
1/C/1033:1037
No text annotation
Not in a motif group
J3_7S1G_0091/C/1063:1068,
1/C/1107:1113,
1/C/1187:1193
No text annotation
Not in a motif group
J3_7S1G_0101/C/1073:1074,
1/C/1083:1087,
1/C/1098:1102
No text annotation
Not in a motif group
homologous
J3_5J7L_009
NA
J3_7S1G_0111/C/1116:1118,
1/C/1155:1158,
1/C/1181:1184
No text annotation
Not in a motif group
J3_7S1G_0121/C/1237:1241,
1/C/1296:1303,
1/C/1334:1337
No text annotation
Not in a motif group
J3_7S1G_0131/I/30:31,
1/I/474:481,
1/I/509:510
No text annotation
Not in a motif group
J3_7S1G_0141/I/56:57,
1/I/70:76,
1/I/110:114
No text annotation
Not in a motif group
homologous
J3_5J7L_037
NA
J3_7S1G_0151/I/683:689,
1/I/773:775,
1/I/791:794
No text annotation
Not in a motif group
homologous
J3_5J7L_038
NA
J3_7S1G_0161/I/698:700,
1/I/732:736,
1/I/760:763
No text annotation
Not in a motif group
homologous
J3_7RQB_005
NA
J3_7S1G_0171/I/1055:1057,
1/I/1081:1087,
1/I/1102:1104
No text annotation
Not in a motif group
homologous
J3_6PRV_001
NA
J3_7S1G_0181/I/1298:1303,
1/I/1625:1627,
1/I/1639:1642
No text annotation
Not in a motif group
homologous
J3_5J7L_041
NA
J3_7S1G_0191/I/1306:1309,
1/I/1605:1611,
1/I/1620:1622
No text annotation
Not in a motif group
homologous
J3_7A0S_007
NA
J3_7S1G_0201/I/1344:1349,
1/I/1382:1385,
1/I/1402:1403
No text annotation
Not in a motif group
homologous
J3_5J7L_043
NA
J3_7S1G_0211/I/2091:2093,
1/I/2196:2200,
1/I/2223:2228
No text annotation
Not in a motif group
homologous
J3_5J7L_044
NA
J3_7S1G_0221/I/2295:2299,
1/I/2317:2323,
1/I/2332:2337
No text annotation
Not in a motif group
J3_7S1G_0231/I/2517:2520,
1/I/2545:2547,
1/I/2561:2567
No text annotation
Not in a motif group
J3_7S1G_0241/I/2789:2791,
1/I/2805:2806,
1/I/2892:2894
No text annotation
Not in a motif group
J3_7S1G_0251/I/2812:2815,
1/I/2831:2836,
1/I/2882:2888
No text annotation
Not in a motif group
homologous
J3_5J7L_048
NA
J3_7S1G_0261/J/10:16,
1/J/68:70,
1/J/106:110
No text annotation
Not in a motif group
homologous
J3_5J7L_049
NA

Problematic loops

No problematic loops


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