7TTU Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/1/67:74 | NA | NA |
| 2 | ➜ | 1/1/87:95 | NA | NA |
| 3 | ➜ | 1/1/122:127 | NA | NA |
| 4 | ➜ | 1/1/136:143 | NA | NA |
| 5 | ➜ | 1/1/158:170 | NA | NA |
| 6 | ➜ | 1/1/197:204 | NA | NA |
| 7 | ➜ | 1/1/228:233 | NA | NA |
| 8 | ➜ | 1/1/249:255 | NA | NA |
| 9 | ➜ | 1/1/348:355 | NA | NA |
| 10 | ➜ | 1/1/362:366 | NA | NA |
| 11 | ➜ | 1/1/370:378 | NA | NA |
| 12 | ➜ | 1/1/427:439 | NA | NA |
| 13 | ➜ | 1/1/456:463 | NA | NA |
| 14 | ➜ | 1/1/508:513 | NA | NA |
| 15 | ➜ | 1/1/533:538 | NA | NA |
| 16 | ➜ | 1/1/587:594 | NA | NA |
| 17 | ➜ | 1/1/609:618 | NA | NA |
| 18 | ➜ | 1/1/655:661 | NA | NA |
| 19 | ➜ | 1/1/674:679 | NA | NA |
| 20 | ➜ | 1/1/686:692 | NA | NA |
| 21 | ➜ | 1/1/757:764 | NA | NA |
| 22 | ➜ | 1/1/789:798 | NA | NA |
| 23 | ➜ | 1/1/823:831 | NA | NA |
| 24 | ➜ | 1/1/871:876 | NA | NA |
| 25 | ➜ | 1/1/998:1007 | NA | NA |
| 26 | ➜ | 1/1/1022:1029 | NA | NA |
| 27 | ➜ | 1/1/1260:1265 | NA | NA |
| 28 | ➜ | 1/1/1318:1326 | NA | NA |
| 29 | ➜ | 1/1/1361:1367 | NA | NA |
| 30 | ➜ | 1/1/1400:1405 | NA | NA |
| 31 | ➜ | 1/1/1426:1435 | NA | NA |
| 32 | ➜ | 1/1/1492:1506 | NA | NA |
| 33 | ➜ | 1/1/1612:1615 | NA | NA |
| 34 | ➜ | 1/1/1656:1663 | NA | NA |
| 35 | ➜ | 1/1/1673:1681 | NA | NA |
| 36 | ➜ | 1/1/1735:1740 | NA | NA |
| 37 | ➜ | 1/1/1762:1767 | NA | NA |
| 38 | ➜ | 1/1/1779:1783 | NA | NA |
| 39 | ➜ | 1/1/1804:1814 | NA | NA |
| 40 | ➜ | 1/1/1833:1838 | NA | NA |
| 41 | ➜ | 1/1/1895:1900 | NA | NA |
| 42 | ➜ | 1/1/1937:1947 | NA | NA |
| 43 | ➜ | 1/1/1976:1984 | NA | NA |
| 44 | ➜ | 1/1/2054:2063 | NA | NA |
| 45 | ➜ | 1/1/2236:2242 | NA | NA |
| 46 | ➜ | 1/1/2275:2283 | NA | NA |
| 47 | ➜ | 1/1/2291:2303 | NA | NA |
| 48 | ➜ | 1/1/2330:2340 | NA | NA |
| 49 | ➜ | 1/1/2351:2358 | NA | NA |
| 50 | ➜ | 1/1/2382:2389 | NA | NA |
| 51 | ➜ | 1/1/2401:2406 | NA | NA |
| 52 | ➜ | 1/1/2431:2440 | NA | NA |
| 53 | ➜ | 1/1/2498:2506 | NA | NA |
| 54 | ➜ | 1/1/2555:2562 | NA | NA |
| 55 | ➜ | 1/1/2578:2584 | NA | NA |
| 56 | ➜ | 1/1/2621:2626 | NA | NA |
| 57 | ➜ | 1/1/2685:2690 | NA | NA |
| 58 | ➜ | 1/1/2728:2733 | NA | NA |
| 59 | ➜ | 1/1/2772:2786 | NA | NA |
| 60 | ➜ | 1/1/2819:2824 | NA | NA |
| 61 | ➜ | 1/1/2839:2847 | NA | NA |
| 62 | ➜ | 1/1/2876:2881 | NA | NA |
| 63 | ➜ | 1/2/36:42 | NA | NA |
| 64 | ➜ | 1/2/80:89 | NA | NA |
Problematic loops
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/1/24:30,1/1/555:561 | NA | NA |
| 2 | ➜ | 1/1/36:37,1/1/488:490 | NA | NA |
| 3 | ➜ | 1/1/42:44,1/1/480:483 | NA | NA |
| 4 | ➜ | 1/1/81:85,1/1/97:104 | NA | NA |
| 5 | ➜ | 1/1/152:153,1/1/175:177 | NA | NA |
| 6 | ➜ | 1/1/186:187,1/1/215:217 | NA | NA |
| 7 | ➜ | 1/1/190:197,1/1/204:212 | NA | NA |
| 8 | ➜ | 1/1/241:248,1/1/256:262 | NA | NA |
| 9 | ➜ | 1/1/305:308,1/1/407:412 | NA | NA |
| 10 | ➜ | 1/1/328:331,1/1/395:399 | NA | NA |
| 11 | ➜ | 1/1/336:338,1/1/386:390 | NA | NA |
| 12 | ➜ | 1/1/527:530,1/1/541:554 | NA | NA |
| 13 | ➜ | 1/1/581:584,1/1/597:600 | NA | NA |
| 14 | ➜ | 1/1/607:609,1/1/618:620 | NA | NA |
| 15 | ➜ | 1/1/638:640,1/1/705:707 | NA | NA |
| 16 | ➜ | 1/1/649:653,1/1/663:667 | NA | NA |
| 17 | ➜ | 1/1/717:719,1/1/851:853 | NA | NA |
| 18 | ➜ | 1/1/719:723,1/1/844:851 | NA | NA |
| 19 | ➜ | 1/1/742:743,1/1/808:810 | NA | NA |
| 20 | ➜ | 1/1/747:748,1/1/773:775 | NA | NA |
| 21 | ➜ | 1/1/748:752,1/1/769:773 | NA | NA |
| 22 | ➜ | 1/1/783:785,1/1/802:803 | NA | NA |
| 23 | ➜ | 1/1/820:822,1/1/832:836 | NA | NA |
| 24 | ➜ | 1/1/882:883,1/1/984:986 | NA | NA |
| 25 | ➜ | 1/1/888:893,1/1/975:979 | NA | NA |
| 26 | ➜ | 1/1/894:896,1/1/972:974 | NA | NA |
| 27 | ➜ | 1/1/897:898,1/1/969:971 | NA | NA |
| 28 | ➜ | 1/1/901:907,1/1/960:966 | NA | NA |
| 29 | ➜ | 1/1/907:908,1/1/958:960 | NA | NA |
| 30 | ➜ | 1/1/909:913,1/1/954:957 | NA | NA |
| 31 | ➜ | 1/1/1038:1040,1/1/1203:1204 | NA | NA |
| 32 | ➜ | 1/1/1042:1046,1/1/1197:1201 | NA | NA |
| 33 | ➜ | 1/1/1048:1057,1/1/1193:1195 | NA | NA |
| 34 | ➜ | 1/1/1062:1068,1/1/1184:1188 | NA | NA |
| 35 | ➜ | 1/1/1068:1074,1/1/1168:1184 | NA | NA |
| 36 | ➜ | 1/1/1075:1078,1/1/1165:1167 | NA | NA |
| 37 | ➜ | 1/1/1081:1083,1/1/1160:1162 | NA | NA |
| 38 | ➜ | 1/1/1235:1237,1/1/1285:1288 | NA | NA |
| 39 | ➜ | 1/1/1243:1245,1/1/1277:1279 | NA | NA |
| 40 | ➜ | 1/1/1246:1253,1/1/1272:1276 | NA | NA |
| 41 | ➜ | 1/1/1257:1259,1/1/1266:1268 | NA | NA |
| 42 | ➜ | 1/1/1300:1307,1/1/2038:2044 | NA | NA |
| 43 | ➜ | 1/1/1356:1360,1/1/1368:1370 | NA | NA |
| 44 | ➜ | 1/1/1388:1392,1/1/1413:1417 | NA | NA |
| 45 | ➜ | 1/1/1394:1398,1/1/1407:1411 | NA | NA |
| 46 | ➜ | 1/1/1461:1465,1/1/1624:1627 | NA | NA |
| 47 | ➜ | 1/1/1476:1480,1/1/1604:1608 | NA | NA |
| 48 | ➜ | 1/1/1511:1516,1/1/1564:1570 | NA | NA |
| 49 | ➜ | 1/1/1517:1523,1/1/1558:1563 | NA | NA |
| 50 | ➜ | 1/1/1695:1700,1/1/2031:2033 | NA | NA |
| 51 | ➜ | 1/1/1707:1709,1/1/2022:2024 | NA | NA |
| 52 | ➜ | 1/1/1710:1713,1/1/2020:2021 | NA | NA |
| 53 | ➜ | 1/1/1713:1718,1/1/2017:2020 | NA | NA |
| 54 | ➜ | 1/1/1730:1735,1/1/1740:1746 | NA | NA |
| 55 | ➜ | 1/1/1755:1761,1/1/1768:1774 | NA | NA |
| 56 | ➜ | 1/1/1796:1798,1/1/2007:2010 | NA | NA |
| 57 | ➜ | 1/1/1825:1831,1/1/1840:1848 | NA | NA |
| 58 | ➜ | 1/1/1864:1867,1/1/1929:1930 | NA | NA |
| 59 | ➜ | 1/1/1868:1869,1/1/1925:1928 | NA | NA |
| 60 | ➜ | 1/1/1873:1876,1/1/1920:1921 | NA | NA |
| 61 | ➜ | 1/1/1878:1882,1/1/1914:1918 | NA | NA |
| 62 | ➜ | 1/1/1883:1887,1/1/1909:1913 | NA | NA |
| 63 | ➜ | 1/1/1891:1894,1/1/1901:1905 | NA | NA |
| 64 | ➜ | 1/1/1960:1961,1/1/1991:1994 | NA | NA |
| 65 | ➜ | 1/1/1961:1972,1/1/1988:1991 | NA | NA |
| 66 | ➜ | 1/1/2077:2079,1/1/2644:2645 | NA | NA |
| 67 | ➜ | 1/1/2081:2084,1/1/2638:2642 | NA | NA |
| 68 | ➜ | 1/1/2094:2096,1/1/2469:2470 | NA | NA |
| 69 | ➜ | 1/1/2097:2098,1/1/2465:2468 | NA | NA |
| 70 | ➜ | 1/1/2108:2110,1/1/2263:2266 | NA | NA |
| 71 | ➜ | 1/1/2229:2231,1/1/2247:2248 | NA | NA |
| 72 | ➜ | 1/1/2324:2326,1/1/2344:2348 | NA | NA |
| 73 | ➜ | 1/1/2377:2380,1/1/2391:2394 | NA | NA |
| 74 | ➜ | 1/1/2428:2430,1/1/2441:2442 | NA | NA |
| 75 | ➜ | 1/1/2480:2481,1/1/2525:2527 | NA | NA |
| 76 | ➜ | 1/1/2481:2482,1/1/2523:2525 | NA | NA |
| 77 | ➜ | 1/1/2484:2486,1/1/2520:2521 | NA | NA |
| 78 | ➜ | 1/1/2486:2488,1/1/2516:2520 | NA | NA |
| 79 | ➜ | 1/1/2493:2497,1/1/2507:2511 | NA | NA |
| 80 | ➜ | 1/1/2534:2536,1/1/2606:2609 | NA | NA |
| 81 | ➜ | 1/1/2537:2539,1/1/2601:2605 | NA | NA |
| 82 | ➜ | 1/1/2539:2540,1/1/2598:2601 | NA | NA |
| 83 | ➜ | 1/1/2549:2550,1/1/2567:2570 | NA | NA |
| 84 | ➜ | 1/1/2618:2619,1/1/2628:2630 | NA | NA |
| 85 | ➜ | 1/1/2663:2667,1/1/2801:2809 | NA | NA |
| 86 | ➜ | 1/1/2679:2685,1/1/2690:2695 | NA | NA |
| 87 | ➜ | 1/1/2707:2711,1/1/2752:2754 | NA | NA |
| 88 | ➜ | 1/1/2714:2718,1/1/2745:2749 | NA | NA |
| 89 | ➜ | 1/1/2722:2723,1/1/2738:2741 | NA | NA |
| 90 | ➜ | 1/1/2764:2769,1/1/2789:2794 | NA | NA |
| 91 | ➜ | 1/1/2857:2859,1/1/2898:2901 | NA | NA |
| 92 | ➜ | 1/1/2863:2865,1/1/2891:2894 | NA | NA |
| 93 | ➜ | 1/1/2867:2872,1/1/2885:2889 | NA | NA |
| 94 | ➜ | 1/2/15:16,1/2/63:65 | NA | NA |
| 95 | ➜ | 1/2/21:29,1/2/49:58 | NA | NA |
| 96 | ➜ | 1/2/32:36,1/2/42:46 | NA | NA |
| 97 | ➜ | 1/2/77:80,1/2/89:92 | NA | NA |
Problematic loops
No problematic loops
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/1/30:31,1/1/520:527,1/1/554:555 | NA | NA |
| 2 | ➜ | 1/1/56:67,1/1/74:76,1/1/109:113 | NA | NA |
| 3 | ➜ | 1/1/272:276,1/1/295:302,1/1/415:416 | NA | NA |
| 4 | ➜ | 1/1/728:734,1/1/818:820,1/1/836:839 | NA | NA |
| 5 | ➜ | 1/1/743:745,1/1/777:781,1/1/805:808 | NA | NA |
| 6 | ➜ | 1/1/1335:1340,1/1/1669:1671,1/1/1683:1686 | NA | NA |
| 7 | ➜ | 1/1/1342:1346,1/1/1649:1655,1/1/1664:1667 | NA | NA |
| 8 | ➜ | 1/1/2118:2120,1/1/2223:2228,1/1/2249:2255 | NA | NA |
| 9 | ➜ | 1/1/2322:2324,1/1/2348:2350,1/1/2359:2364 | NA | NA |
| 10 | ➜ | 1/1/2544:2547,1/1/2572:2574,1/1/2588:2594 | NA | NA |
| 11 | ➜ | 1/1/2834:2835,1/1/2851:2856,1/1/2902:2906 | NA | NA |
Problematic loops
No problematic loops
Coloring options: