7V08 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7V08_001 | 1/1/39:44 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98557.5 | |
| HL_7V08_002 | 1/1/69:74 | No text annotation Not in a motif group | homologous HL_5TBW_002 HL_96776.3 | |
| HL_7V08_003 | 1/1/90:96 | No text annotation Not in a motif group | homologous HL_5TBW_003 HL_67216.5 | |
| HL_7V08_004 | 1/1/132:136 | No text annotation Not in a motif group | homologous HL_5TBW_004 HL_36982.3 | |
| HL_7V08_005 | 1/1/194:201 | T-loop with 1 bulged base Not in a motif group | homologous HL_5TBW_005 HL_68493.6 | |
| HL_7V08_006 | 1/1/208:212 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98557.5 | |
| HL_7V08_007 | 1/1/216:224 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.6 | |
| HL_7V08_008 | 1/1/280:285 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_40469.1 | |
| HL_7V08_009 | 1/1/303:312 | No text annotation Not in a motif group | homologous HL_5TBW_009 HL_46142.8 | |
| HL_7V08_010 | 1/1/357:362 | Other HL Not in a motif group | homologous HL_5TBW_010 HL_43074.18 | |
| HL_7V08_011 | 1/1/382:387 | GNRA Not in a motif group | homologous HL_5TBW_011 HL_43074.18 | |
| HL_7V08_012 | 1/1/540:551 | No text annotation Not in a motif group | ||
| HL_7V08_013 | 1/1/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_43074.18 | |
| HL_7V08_014 | 1/1/638:651 | No text annotation Not in a motif group | ||
| HL_7V08_015 | 1/1/686:694 | No text annotation Not in a motif group | homologous HL_5TBW_015 HL_80105.3 | |
| HL_7V08_016 | 1/1/707:712 | GNRA Not in a motif group | homologous HL_5TBW_016 HL_43074.18 | |
| HL_7V08_017 | 1/1/732:737 | GNRA Not in a motif group | homologous HL_5TBW_017 HL_43074.18 | |
| HL_7V08_018 | 1/1/763:768 | No text annotation Not in a motif group | geometric HL_5TBW_018 HL_00996.1 | |
| HL_7V08_019 | 1/1/844:849 | GNRA Not in a motif group | homologous HL_5TBW_019 HL_43074.18 | |
| HL_7V08_020 | 1/1/875:886 | No text annotation Not in a motif group | ||
| HL_7V08_021 | 1/1/910:918 | No text annotation Not in a motif group | homologous HL_5TBW_021 HL_05832.1 | |
| HL_7V08_022 | 1/1/958:963 | No text annotation Not in a motif group | homologous HL_5TBW_022 HL_15942.5 | |
| HL_7V08_023 | 1/1/991:1058 | No text annotation Not in a motif group | ||
| HL_7V08_024 | 1/1/1073:1085 | No text annotation Not in a motif group | ||
| HL_7V08_025 | 1/1/1126:1132 | Other HL Not in a motif group | geometric HL_4V9F_039 HL_68493.6 | |
| HL_7V08_026 | 1/1/1148:1155 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_72451.5 | |
| HL_7V08_027 | 1/1/1239:1249 | No text annotation Not in a motif group | geometric HL_5D8H_001 HL_92304.3 | |
| HL_7V08_028 | 1/1/1267:1274 | No text annotation Not in a motif group | geometric HL_5D8H_002 HL_93727.5 | |
| HL_7V08_029 | 1/1/1347:1357 | No text annotation Not in a motif group | geometric HL_4OOG_001 HL_68529.2 | |
| HL_7V08_030 | 1/1/1403:1408 | GNRA Not in a motif group | homologous HL_5TBW_030 HL_43074.18 | |
| HL_7V08_031 | 1/1/1462:1470 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_031 HL_33239.17 | |
| HL_7V08_032 | 1/1/1506:1512 | No text annotation Not in a motif group | homologous HL_5TBW_032 HL_86880.5 | |
| HL_7V08_033 | 1/1/1544:1549 | Other HL Not in a motif group | homologous HL_5TBW_033 HL_43074.18 | |
| HL_7V08_034 | 1/1/1565:1574 | No text annotation Not in a motif group | ||
| HL_7V08_035 | 1/1/1599:1608 | No text annotation Not in a motif group | homologous HL_5TBW_035 HL_78457.4 | |
| HL_7V08_036 | 1/1/1634:1639 | GNRA Not in a motif group | homologous HL_5TBW_036 HL_43074.18 | |
| HL_7V08_037 | 1/1/1680:1688 | No text annotation Not in a motif group | homologous HL_5TBW_037 HL_73793.2 | |
| HL_7V08_038 | 1/1/1719:1725 | No text annotation Not in a motif group | homologous HL_5TBW_038 HL_00923.1 | |
| HL_7V08_039 | 1/1/1759:1766 | No text annotation Not in a motif group | ||
| HL_7V08_040 | 1/1/1792:1796 | No text annotation Not in a motif group | homologous HL_5TBW_040 HL_69353.7 | |
| HL_7V08_041 | 1/1/1844:1851 | No text annotation Not in a motif group | homologous HL_5TBW_041 HL_66171.3 | |
| HL_7V08_042 | 1/1/1862:1868 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_02361.6 | |
| HL_7V08_043 | 1/1/1923:1928 | UNCG Not in a motif group | homologous HL_5TBW_043 HL_79299.11 | |
| HL_7V08_044 | 1/1/1952:2094 | No text annotation Not in a motif group | ||
| HL_7V08_045 | 1/1/2110:2114 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_98557.5 | |
| HL_7V08_046 | 1/1/2135:2145 | No text annotation Not in a motif group | homologous HL_5TBW_046 HL_43613.4 | |
| HL_7V08_047 | 1/1/2164:2170 | GNRA Not in a motif group | homologous HL_5TBW_047 HL_43074.18 | |
| HL_7V08_048 | 1/1/2219:2226 | No text annotation Not in a motif group | geometric HL_6CF2_001 HL_80105.3 | |
| HL_7V08_049 | 1/1/2369:2378 | No text annotation Not in a motif group | geometric HL_4FRN_007 HL_08002.6 | |
| HL_7V08_050 | 1/1/2443:2504 | No text annotation Not in a motif group | ||
| HL_7V08_051 | 1/1/2568:2573 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_69459.1 | |
| HL_7V08_052 | 1/1/2673:2681 | No text annotation Not in a motif group | homologous HL_5TBW_056 HL_76406.3 | |
| HL_7V08_053 | 1/1/2693:2700 | No text annotation Not in a motif group | geometric HL_7RQB_011 HL_98557.5 | |
| HL_7V08_054 | 1/1/2726:2732 | No text annotation Not in a motif group | geometric HL_5T16_002 HL_68529.2 | |
| HL_7V08_055 | 1/1/2744:2749 | GNRA Not in a motif group | homologous HL_5TBW_059 HL_43074.18 | |
| HL_7V08_056 | 1/1/2776:2784 | No text annotation Not in a motif group | homologous HL_5TBW_060 HL_46142.8 | |
| HL_7V08_057 | 1/1/2840:2848 | No text annotation Not in a motif group | geometric HL_5J7L_151 HL_25660.1 | |
| HL_7V08_058 | 1/1/2897:2904 | No text annotation Not in a motif group | homologous HL_5TBW_062 HL_92681.5 | |
| HL_7V08_059 | 1/1/2963:2968 | GNRA Not in a motif group | homologous HL_5TBW_064 HL_43074.18 | |
| HL_7V08_060 | 1/1/3025:3030 | GNRA Not in a motif group | homologous HL_5TBW_065 HL_43074.18 | |
| HL_7V08_061 | 1/1/3068:3073 | Ribsomal LSU H95 Not in a motif group | homologous HL_5TBW_066 HL_67719.1 | |
| HL_7V08_062 | 1/1/3110:3124 | No text annotation Not in a motif group | homologous HL_5TBW_067 HL_56677.5 | |
| HL_7V08_063 | 1/1/3194:3197 | No text annotation Not in a motif group | homologous HL_5TBW_068 HL_46546.1 | |
| HL_7V08_064 | 1/1/3240:3247 | No text annotation Not in a motif group | homologous HL_5TBW_069 HL_27757.1 | |
| HL_7V08_065 | 1/1/3303:3311 | No text annotation Not in a motif group | homologous HL_5TBW_070 HL_05018.6 | |
| HL_7V08_066 | 1/2/69:89 | No text annotation Not in a motif group | ||
| HL_7V08_067 | 1/2/108:114 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_06569.2 | |
| HL_7V08_068 | 1/2/124:129 | No text annotation Not in a motif group | homologous HL_5TBW_076 HL_60357.1 | |
| HL_7V08_069 | 1/3/36:41 | No text annotation Not in a motif group | homologous HL_5TBW_185 HL_02733.5 | |
| HL_7V08_070 | 1/3/87:94 | No text annotation Not in a motif group | ||
| HL_7V08_071 | 1/6/36:43 | No text annotation Not in a motif group | geometric HL_6ORD_035 HL_53499.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7V08_001 | 1/1/7:8, 1/2/150:152 | Single bulged C Not in a motif group | homologous IL_5TBW_002 IL_61258.10 | |
| IL_7V08_002 | 1/1/13:15, 1/2/144:145 | Single bulged U Not in a motif group | homologous IL_5TBW_003 IL_83039.11 | |
| IL_7V08_003 | 1/1/27:28, 1/1/56:58 | Single stack bend Not in a motif group | homologous IL_5TBW_004 IL_04038.4 | |
| IL_7V08_004 | 1/1/31:38, 1/1/45:53 | tSH-tHW-tHH-tHS Not in a motif group | homologous IL_5TBW_005 IL_22863.1 | |
| IL_7V08_005 | 1/1/82:89, 1/1/97:103 | No text annotation Not in a motif group | homologous IL_5TBW_006 IL_29509.1 | |
| IL_7V08_006 | 1/1/123:124, 1/1/144:149 | No text annotation Not in a motif group | homologous IL_5TBW_007 IL_19724.1 | |
| IL_7V08_007 | 1/1/125:127, 1/1/141:143 | No text annotation Not in a motif group | homologous IL_5TBW_008 IL_01312.13 | |
| IL_7V08_008 | 1/1/163:165, 1/1/257:258 | Single stack bend Not in a motif group | homologous IL_5TBW_009 IL_04038.4 | |
| IL_7V08_009 | 1/1/169:171, 1/1/247:253 | No text annotation Not in a motif group | ||
| IL_7V08_010 | 1/1/176:178, 1/1/238:242 | 8-nt loop receptor Not in a motif group | geometric IL_5U3G_002 IL_97601.6 | |
| IL_7V08_011 | 1/1/189:191, 1/1/204:205 | Single bulged U Not in a motif group | homologous IL_5TBW_012 IL_83039.11 | |
| IL_7V08_012 | 1/1/278:280, 1/1/285:287 | No text annotation Not in a motif group | geometric IL_7RQB_015 IL_01312.13 | |
| IL_7V08_013 | 1/1/337:339, 1/2/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_80007.16 | |
| IL_7V08_014 | 1/1/376:379, 1/1/390:403 | No text annotation Not in a motif group | geometric IL_5TBW_014 IL_60992.5 | |
| IL_7V08_015 | 1/1/404:410, 1/2/13:19 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5TBW_015 IL_66414.5 | |
| IL_7V08_016 | 1/1/429:431, 1/1/628:630 | No text annotation Not in a motif group | homologous IL_5TBW_016 IL_01312.13 | |
| IL_7V08_017 | 1/1/435:495, 1/1/618:624 | No text annotation Not in a motif group | homologous IL_5TBW_017 IL_33557.1 | |
| IL_7V08_018 | 1/1/512:513, 1/1/577:579 | Single bulged A Not in a motif group | homologous IL_5TBW_018 IL_40508.4 | |
| IL_7V08_019 | 1/1/517:525, 1/1/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_41593.1 | |
| IL_7V08_020 | 1/1/531:538, 1/1/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_94501.1 | |
| IL_7V08_021 | 1/1/668:670, 1/1/792:794 | No text annotation Not in a motif group | homologous IL_5TBW_021 IL_01312.13 | |
| IL_7V08_022 | 1/1/680:684, 1/1/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_92343.1 | |
| IL_7V08_023 | 1/1/725:728, 1/1/741:745 | UAA/GAN Not in a motif group | homologous IL_5TBW_023 IL_53523.5 | |
| IL_7V08_024 | 1/1/752:753, 1/1/779:781 | Single bulged A Not in a motif group | homologous IL_5TBW_024 IL_80007.16 | |
| IL_7V08_025 | 1/1/758:763, 1/1/768:773 | No text annotation Not in a motif group | homologous IL_5TBW_026 IL_19954.1 | |
| IL_7V08_026 | 1/1/803:809, 1/1/931:940 | No text annotation Not in a motif group | ||
| IL_7V08_027 | 1/1/826:828, 1/1/897:899 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_01312.13 | |
| IL_7V08_028 | 1/1/828:829, 1/1/895:897 | Single bulged A Not in a motif group | geometric IL_4V9F_025 IL_80007.16 | |
| IL_7V08_029 | 1/1/833:834, 1/1/859:861 | Single bulged G Not in a motif group | homologous IL_5TBW_029 IL_99645.1 | |
| IL_7V08_030 | 1/1/834:838, 1/1/855:859 | Triple sheared Not in a motif group | geometric IL_5TBW_030 IL_56467.6 | |
| IL_7V08_031 | 1/1/869:872, 1/1/888:890 | Major groove platform with extra cWW Not in a motif group | homologous IL_5TBW_031 IL_95485.6 | |
| IL_7V08_032 | 1/1/873:875, 1/1/886:887 | Single bulged U Not in a motif group | geometric IL_3D2V_001 IL_83039.11 | |
| IL_7V08_033 | 1/1/907:909, 1/1/919:923 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_033 IL_90991.5 | |
| IL_7V08_034 | 1/1/969:970, 1/1/1111:1113 | Single stack bend Not in a motif group | geometric IL_5TBW_035 IL_04038.4 | |
| IL_7V08_035 | 1/1/970:972, 1/1/1109:1111 | Isolated near basepair Not in a motif group | geometric IL_4V88_406 IL_01312.13 | |
| IL_7V08_036 | 1/1/977:982, 1/1/1101:1104 | No text annotation Not in a motif group | ||
| IL_7V08_037 | 1/1/983:985, 1/1/1099:1100 | Single bulged G Not in a motif group | homologous IL_5TBW_037 IL_59137.10 | |
| IL_7V08_038 | 1/1/989:991, 1/1/1058:1060 | No text annotation Not in a motif group | geometric IL_1NBS_006 IL_01312.13 | |
| IL_7V08_039 | 1/1/1069:1072, 1/1/1086:1089 | No text annotation Not in a motif group | ||
| IL_7V08_040 | 1/1/1120:1122, 1/1/1136:1138 | No text annotation Not in a motif group | homologous IL_5TBW_046 IL_01312.13 | |
| IL_7V08_041 | 1/1/1167:1171, 1/1/1328:1332 | UAA/GAN Not in a motif group | homologous IL_5TBW_048 IL_53523.5 | |
| IL_7V08_042 | 1/1/1173:1180, 1/1/1325:1326 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5TBW_049 IL_15861.6 | |
| IL_7V08_043 | 1/1/1180:1182, 1/1/1324:1325 | Single bulged U Not in a motif group | geometric IL_5TBW_050 IL_83039.11 | |
| IL_7V08_044 | 1/1/1187:1194, 1/1/1314:1319 | No text annotation Not in a motif group | homologous IL_5TBW_051 IL_17971.1 | |
| IL_7V08_045 | 1/1/1194:1205, 1/1/1299:1314 | No text annotation Not in a motif group | ||
| IL_7V08_046 | 1/1/1207:1209, 1/1/1296:1297 | Single bulged U Not in a motif group | homologous IL_5TBW_053 IL_83039.11 | |
| IL_7V08_047 | 1/1/1218:1226, 1/1/1283:1287 | Kink-turn Not in a motif group | homologous IL_5TBW_054 IL_90538.3 | |
| IL_7V08_048 | 1/1/1234:1238, 1/1/1250:1254 | No text annotation Not in a motif group | geometric IL_4V9F_043 IL_30542.1 | |
| IL_7V08_049 | 1/1/1262:1266, 1/1/1275:1277 | Major groove platform with extra cWW Not in a motif group | geometric IL_5D8H_003 IL_95485.6 | |
| IL_7V08_050 | 1/1/1376:1378, 1/1/1428:1431 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_057 IL_01312.13 | |
| IL_7V08_051 | 1/1/1385:1387, 1/1/1420:1421 | Single bulged A Not in a motif group | homologous IL_5TBW_058 IL_80007.16 | |
| IL_7V08_052 | 1/1/1388:1395, 1/1/1415:1419 | Kink-turn Not in a motif group | homologous IL_5TBW_059 IL_29549.9 | |
| IL_7V08_053 | 1/1/1398:1400, 1/1/1411:1412 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_80007.16 | |
| IL_7V08_054 | 1/1/1444:1451, 1/1/2353:2359 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge Not in a motif group | geometric IL_4V9F_012 IL_59724.1 | |
| IL_7V08_055 | 1/1/1492:1495, 1/1/1835:1836 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V9F_050 IL_70995.6 | |
| IL_7V08_056 | 1/1/1500:1505, 1/1/1513:1516 | No text annotation Not in a motif group | homologous IL_5TBW_062 IL_47743.1 | |
| IL_7V08_057 | 1/1/1532:1536, 1/1/1585:1590 | UAA/GAN Not in a motif group | homologous IL_5TBW_063 IL_53523.5 | |
| IL_7V08_058 | 1/1/1618:1621, 1/1/1824:1826 | Other IL Not in a motif group | homologous IL_5TBW_064 IL_87630.5 | |
| IL_7V08_059 | 1/1/1623:1624, 1/1/1819:1822 | Multiple bulged bases Not in a motif group | geometric IL_4YAZ_007 IL_66450.1 | |
| IL_7V08_060 | 1/1/1627:1631, 1/1/1811:1816 | No text annotation Not in a motif group | homologous IL_5TBW_066 IL_74736.1 | |
| IL_7V08_061 | 1/1/1645:1649, 1/1/1806:1810 | Triple sheared Not in a motif group | homologous IL_5TBW_067 IL_56467.6 | |
| IL_7V08_062 | 1/1/1661:1663, 1/1/1786:1788 | No text annotation Not in a motif group | homologous IL_5TBW_068 IL_01312.13 | |
| IL_7V08_063 | 1/1/1669:1670, 1/1/1778:1780 | Single bulged C Not in a motif group | homologous IL_5TBW_069 IL_61258.10 | |
| IL_7V08_064 | 1/1/1670:1671, 1/1/1776:1778 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_72766.2 | |
| IL_7V08_065 | 1/1/1694:1698, 1/1/1747:1752 | No text annotation Not in a motif group | homologous IL_5TBW_071 IL_14397.1 | |
| IL_7V08_066 | 1/1/1702:1707, 1/1/1737:1743 | No text annotation Not in a motif group | homologous IL_5TBW_072 IL_98876.1 | |
| IL_7V08_067 | 1/1/1711:1717, 1/1/1727:1733 | Kink-turn Not in a motif group | homologous IL_5TBW_073 IL_76900.1 | |
| IL_7V08_068 | 1/1/1880:1882, 1/1/2350:2352 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_04038.4 | |
| IL_7V08_069 | 1/1/1882:1889, 1/1/2346:2350 | No text annotation Not in a motif group | ||
| IL_7V08_070 | 1/1/1894:1897, 1/1/2338:2341 | No text annotation Not in a motif group | ||
| IL_7V08_071 | 1/1/1897:1901, 1/1/2336:2338 | Major groove platform with extra pair Not in a motif group | geometric IL_7RQB_093 IL_87630.5 | |
| IL_7V08_072 | 1/1/1901:1906, 1/1/2333:2336 | Intercalated tWH Not in a motif group | geometric IL_5TBW_077 IL_98882.3 | |
| IL_7V08_073 | 1/1/1918:1923, 1/1/1928:1934 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_4V9F_063 IL_66584.5 | |
| IL_7V08_074 | 1/1/1940:1942, 1/1/2106:2108 | No text annotation Not in a motif group | homologous IL_5TBW_079 IL_01312.13 | |
| IL_7V08_075 | 1/1/1947:1948, 1/1/2098:2101 | No text annotation Not in a motif group | homologous IL_5TBW_080 IL_76195.1 | |
| IL_7V08_076 | 1/1/2128:2130, 1/1/2322:2325 | Intercalated cWW Not in a motif group | geometric IL_7A0S_044 IL_04038.4 | |
| IL_7V08_077 | 1/1/2156:2161, 1/1/2173:2180 | Kink-turn related Not in a motif group | homologous IL_5TBW_083 IL_95993.1 | |
| IL_7V08_078 | 1/1/2196:2199, 1/1/2245:2246 | Minor groove platform Not in a motif group | geometric IL_3RW6_003 IL_27900.1 | |
| IL_7V08_079 | 1/1/2200:2201, 1/1/2241:2244 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_085 IL_13730.12 | |
| IL_7V08_080 | 1/1/2204:2206, 1/1/2237:2238 | Single stack bend Not in a motif group | geometric IL_7KGA_003 IL_04038.4 | |
| IL_7V08_081 | 1/1/2206:2210, 1/1/2235:2237 | No text annotation Not in a motif group | ||
| IL_7V08_082 | 1/1/2211:2217, 1/1/2228:2234 | No text annotation Not in a motif group | homologous IL_5TBW_088 IL_36973.5 | |
| IL_7V08_083 | 1/1/2249:2251, 1/1/2265:2267 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_04038.4 | |
| IL_7V08_084 | 1/1/2251:2253, 1/1/2263:2265 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_04038.4 | |
| IL_7V08_085 | 1/1/2391:2394, 1/1/2986:2988 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_091 IL_87630.5 | |
| IL_7V08_086 | 1/1/2396:2398, 1/1/2981:2984 | Major groove platform Not in a motif group | geometric IL_4WF9_078 IL_80663.10 | |
| IL_7V08_087 | 1/1/2405:2407, 1/1/2814:2816 | UG cWW Not in a motif group | geometric IL_4LFB_061 IL_01312.13 | |
| IL_7V08_088 | 1/1/2410:2411, 1/1/2808:2811 | Multiple bulged bases Not in a motif group | geometric IL_6JXM_001 IL_13730.12 | |
| IL_7V08_089 | 1/1/2413:2415, 1/1/2805:2806 | Single bulged G Not in a motif group | geometric IL_5J7L_040 IL_59137.10 | |
| IL_7V08_090 | 1/1/2420:2422, 1/1/2608:2610 | No text annotation Not in a motif group | geometric IL_2ZNI_001 IL_01312.13 | |
| IL_7V08_091 | 1/1/2423:2425, 1/1/2604:2607 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_095 IL_38958.6 | |
| IL_7V08_092 | 1/1/2520:2526, 1/1/2584:2587 | No text annotation Not in a motif group | homologous IL_5TBW_096 IL_98353.1 | |
| IL_7V08_093 | 1/1/2624:2627, 1/1/2651:2654 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6DTD_001 IL_85877.10 | |
| IL_7V08_094 | 1/1/2666:2668, 1/1/2686:2690 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_099 IL_38958.6 | |
| IL_7V08_095 | 1/1/2720:2722, 1/1/2736:2737 | Single bulged A Not in a motif group | geometric IL_4V9F_098 IL_80007.16 | |
| IL_7V08_096 | 1/1/2741:2742, 1/1/2751:2753 | Single stack bend Not in a motif group | geometric IL_5J7L_269 IL_04038.4 | |
| IL_7V08_097 | 1/1/2770:2773, 1/1/2787:2788 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_13730.12 | |
| IL_7V08_098 | 1/1/2835:2839, 1/1/2849:2853 | Triple sheared Not in a motif group | homologous IL_5TBW_106 IL_56467.6 | |
| IL_7V08_099 | 1/1/2877:2879, 1/1/2947:2949 | Stack and bulge Not in a motif group | geometric IL_2O3X_001 IL_04038.4 | |
| IL_7V08_100 | 1/1/2879:2882, 1/1/2940:2947 | No text annotation Not in a motif group | ||
| IL_7V08_101 | 1/1/2889:2891, 1/1/2912:2914 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_01312.13 | |
| IL_7V08_102 | 1/1/2891:2892, 1/1/2909:2912 | Minor groove platform with intercalation Not in a motif group | homologous IL_5TBW_111 IL_95601.1 | |
| IL_7V08_103 | 1/1/2918:2920, 1/1/2926:2928 | No text annotation Not in a motif group | geometric IL_4WF9_020 IL_01312.13 | |
| IL_7V08_104 | 1/1/2958:2960, 1/1/2972:2974 | No text annotation Not in a motif group | geometric IL_5C5W_002 IL_87880.2 | |
| IL_7V08_105 | 1/1/2960:2961, 1/1/2970:2972 | Minor groove platform Not in a motif group | geometric IL_7A0S_028 IL_06437.11 | |
| IL_7V08_106 | 1/1/3004:3007, 1/1/3139:3144 | Double sheared Not in a motif group | homologous IL_5TBW_114 IL_09705.7 | |
| IL_7V08_107 | 1/1/3012:3014, 1/1/3040:3042 | No text annotation Not in a motif group | homologous IL_5TBW_115 IL_01312.13 | |
| IL_7V08_108 | 1/1/3018:3025, 1/1/3030:3036 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_116 IL_04346.5 | |
| IL_7V08_109 | 1/1/3047:3051, 1/1/3091:3094 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_5TBW_117 IL_28060.3 | |
| IL_7V08_110 | 1/1/3054:3059, 1/1/3084:3088 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_53523.5 | |
| IL_7V08_111 | 1/1/3063:3064, 1/1/3077:3080 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_119 IL_13730.12 | |
| IL_7V08_112 | 1/1/3103:3107, 1/1/3127:3131 | UAA/GAN Not in a motif group | homologous IL_5TBW_120 IL_53523.5 | |
| IL_7V08_113 | 1/1/3159:3161, 1/1/3290:3291 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_04038.4 | |
| IL_7V08_114 | 1/1/3161:3162, 1/1/3288:3290 | Single stack bend Not in a motif group | geometric IL_5VSU_003 IL_06437.11 | |
| IL_7V08_115 | 1/1/3163:3166, 1/1/3284:3287 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5EW4_002 IL_85877.10 | |
| IL_7V08_116 | 1/1/3166:3167, 1/1/3282:3284 | No text annotation Not in a motif group | ||
| IL_7V08_117 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A Not in a motif group | geometric IL_5TBW_123 IL_80007.16 | |
| IL_7V08_118 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation Not in a motif group | homologous IL_5TBW_124 IL_56867.1 | |
| IL_7V08_119 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U Not in a motif group | geometric IL_5TBW_125 IL_83039.11 | |
| IL_7V08_120 | 1/1/3225:3229, 1/1/3258:3260 | No text annotation Not in a motif group | homologous IL_5TBW_126 IL_50789.1 | |
| IL_7V08_121 | 1/1/3233:3235, 1/1/3252:3254 | No text annotation Not in a motif group | geometric IL_5TBW_127 IL_01312.13 | |
| IL_7V08_122 | 1/1/3235:3238, 1/1/3249:3252 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_128 IL_85877.10 | |
| IL_7V08_123 | 1/1/3300:3303, 1/1/3311:3314 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_129 IL_85877.10 | |
| IL_7V08_124 | 1/1/3318:3320, 1/1/3387:3388 | Single bulged U Not in a motif group | geometric IL_5TBW_130 IL_83039.11 | |
| IL_7V08_125 | 1/1/3324:3325, 1/1/3381:3383 | Single bulged U Not in a motif group | homologous IL_5TBW_131 IL_21340.1 | |
| IL_7V08_126 | 1/1/3328:3330, 1/1/3373:3378 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_132 IL_55456.1 | |
| IL_7V08_127 | 1/1/3332:3337, 1/1/3367:3371 | No text annotation Not in a motif group | homologous IL_5TBW_133 IL_47002.1 | |
| IL_7V08_128 | 1/1/3340:3342, 1/1/3363:3364 | Single bulged U Not in a motif group | geometric IL_1ET4_002 IL_83039.11 | |
| IL_7V08_129 | 1/1/3342:3345, 1/1/3360:3363 | tWS-tSW Not in a motif group | homologous IL_5TBW_135 IL_09705.7 | |
| IL_7V08_130 | 1/2/44:64, 1/2/96:100 | No text annotation Not in a motif group | geometric IL_5TBW_144 IL_23735.1 | |
| IL_7V08_131 | 1/2/64:66, 1/2/93:96 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_145 IL_55456.1 | |
| IL_7V08_132 | 1/2/68:69, 1/2/89:91 | Single bulged U Not in a motif group | geometric IL_5TBW_146 IL_83039.11 | |
| IL_7V08_133 | 1/3/15:16, 1/3/63:65 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_80007.16 | |
| IL_7V08_134 | 1/3/21:27, 1/3/53:58 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_05523.1 | |
| IL_7V08_135 | 1/3/28:29, 1/3/49:52 | Minor groove platform Not in a motif group | geometric IL_5TBW_374 IL_94431.4 | |
| IL_7V08_136 | 1/3/29:30, 1/3/47:49 | Single stack bend Not in a motif group | homologous IL_5TBW_375 IL_04038.4 | |
| IL_7V08_137 | 1/3/32:36, 1/3/41:45 | Symmetric double minor groove platform Not in a motif group | geometric IL_5TBW_376 IL_58103.5 | |
| IL_7V08_138 | 1/3/72:80, 1/3/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.5 | |
| IL_7V08_139 | 1/3/84:87, 1/3/94:96 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_01312.13 | |
| IL_7V08_140 | 1/6/26:27, 1/6/51:54 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_13730.12 | |
| IL_7V08_141 | 1/6/30:34, 1/6/45:48 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7V08_001 | 1/1/113:123, 1/1/149:158, 1/1/263:267 | No text annotation Not in a motif group | ||
| J3_7V08_002 | 1/1/369:376, 1/1/403:404, 1/2/19:20 | No text annotation Not in a motif group | ||
| J3_7V08_003 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA | |
| J3_7V08_004 | 1/1/814:820, 1/1/905:907, 1/1/923:926 | No text annotation Not in a motif group | homologous J3_5TBW_004 NA | |
| J3_7V08_005 | 1/1/829:831, 1/1/863:868, 1/1/891:895 | No text annotation Not in a motif group | ||
| J3_7V08_006 | 1/1/1230:1232, 1/1/1256:1262, 1/1/1277:1279 | No text annotation Not in a motif group | homologous J3_5TBW_007 NA | |
| J3_7V08_007 | 1/1/1479:1485, 1/1/1857:1859, 1/1/1871:1874 | No text annotation Not in a motif group | homologous J3_5TBW_008 NA | |
| J3_7V08_008 | 1/1/1488:1491, 1/1/1837:1843, 1/1/1852:1854 | No text annotation Not in a motif group | homologous J3_5TBW_009 NA | |
| J3_7V08_009 | 1/1/1526:1531, 1/1/1591:1595, 1/1/1612:1613 | No text annotation Not in a motif group | homologous J3_5TBW_010 NA | |
| J3_7V08_010 | 1/1/1631:1632, 1/1/1641:1645, 1/1/1810:1811 | No text annotation Not in a motif group | ||
| J3_7V08_011 | 1/1/2432:2435, 1/1/2512:2517, 1/1/2590:2597 | No text annotation Not in a motif group | homologous J3_5TBW_012 NA | |
| J3_7V08_012 | 1/1/2529:2533, 1/1/2546:2563, 1/1/2578:2581 | No text annotation Not in a motif group | ||
| J3_7V08_013 | 1/1/2664:2666, 1/1/2690:2692, 1/1/2701:2706 | No text annotation Not in a motif group | ||
| J3_7V08_014 | 1/1/2886:2889, 1/1/2914:2916, 1/1/2930:2936 | No text annotation Not in a motif group | ||
| J3_7V08_015 | 1/1/3298:3300, 1/1/3314:3318, 1/1/3388:3390 | No text annotation Not in a motif group | ||
| J3_7V08_016 | 1/3/9:14, 1/3/66:67, 1/3/111:112 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA |
Problematic loops
No problematic loops
Coloring options: