7V2Q | Motifs

31 Hairpin loops
49 Internal loops
12 Junction loops

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	HL_7V2Q_001	1/A/12:24	NA	NA
2	HL_7V2Q_003	1/A/153:158	NA	NA
3	HL_7V2Q_004	1/A/187:192	NA	NA
4	HL_7V2Q_005	1/A/208:212	NA	NA
5	HL_7V2Q_006	1/A/255:263	NA	NA
6	HL_7V2Q_007	1/A/292:297	NA	NA
7	HL_7V2Q_008	1/A/316:329	NA	NA
8	HL_7V2Q_010	1/A/375:380	NA	NA
9	HL_7V2Q_011	1/A/415:420	NA	NA
10	HL_7V2Q_012	1/A/452:460	NA	NA
11	HL_7V2Q_013	1/A/506:511	NA	NA
12	HL_7V2Q_014	1/A/601:607	NA	NA
13	HL_7V2Q_015	1/A/673:682	NA	NA
14	HL_7V2Q_016	1/A/710:715	NA	NA
15	HL_7V2Q_018	1/A/822:826	NA	NA
16	HL_7V2Q_019	1/A/840:845	NA	NA
17	HL_7V2Q_020	1/A/875:880	NA	NA
18	HL_7V2Q_021	1/A/941:950	NA	NA
19	HL_7V2Q_022	1/A/991:996	NA	NA
20	HL_7V2Q_024	1/A/1059:1064	NA	NA
21	HL_7V2Q_025	1/A/1072:1079	NA	NA
22	HL_7V2Q_026	1/A/1117:1123	NA	NA
23	HL_7V2Q_027	1/A/1148:1153	NA	NA
24	HL_7V2Q_028	1/A/1247:1252	NA	NA
25	HL_7V2Q_029	1/A/1296:1305	NA	NA
26	HL_7V2Q_031	1/A/1493:1498	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_7V2Q_002	missing nts	NA
2	HL_7V2Q_009	missing nts	NA
3	HL_7V2Q_017	missing nts	NA
4	HL_7V2Q_023	missing nts	NA
5	HL_7V2Q_030	missing nts	NA

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	IL_7V2Q_001	1/A/31:33, 1/A/536:537	NA	NA
2	IL_7V2Q_002	1/A/45:46, 1/A/392:394	NA	NA
3	IL_7V2Q_003	1/A/48:53, 1/A/355:357	NA	NA
4	IL_7V2Q_004	1/A/55:57, 1/A/352:353	NA	NA
5	IL_7V2Q_005	1/A/64:67, 1/A/97:98	NA	NA
6	IL_7V2Q_006	1/A/68:70, 1/A/94:96	NA	NA
7	IL_7V2Q_007	1/A/123:126, 1/A/227:228	NA	NA
8	IL_7V2Q_008	1/A/127:132, 1/A/222:226	NA	NA
9	IL_7V2Q_009	1/A/143:148, 1/A/163:169	NA	NA
10	IL_7V2Q_010	1/A/181:183, 1/A/196:198	NA	NA
11	IL_7V2Q_011	1/A/238:243, 1/A/273:280	NA	NA
12	IL_7V2Q_012	1/A/245:248, 1/A/270:271	NA	NA
13	IL_7V2Q_013	1/A/288:289, 1/A/300:304	NA	NA
14	IL_7V2Q_014	1/A/366:371, 1/A/385:387	NA	NA
15	IL_7V2Q_015	1/A/371:372, 1/A/383:385	NA	NA
16	IL_7V2Q_016	1/A/405:413, 1/A/422:429	NA	NA
17	IL_7V2Q_017	1/A/441:445, 1/A/468:473	NA	NA
18	IL_7V2Q_018	1/A/445:450, 1/A/462:468	NA	NA
19	IL_7V2Q_019	1/A/488:495, 1/A/524:525	NA	NA
20	IL_7V2Q_020	1/A/499:505, 1/A/512:520	NA	NA
21	IL_7V2Q_021	1/A/553:559, 1/A/858:859	NA	NA
22	IL_7V2Q_022	1/A/564:568, 1/A/741:745	NA	NA
23	IL_7V2Q_023	1/A/578:580, 1/A/628:629	NA	NA
24	IL_7V2Q_024	1/A/581:582, 1/A/624:627	NA	NA
25	IL_7V2Q_025	1/A/589:596, 1/A/612:617	NA	NA
26	IL_7V2Q_026	1/A/638:639, 1/A/735:738	NA	NA
27	IL_7V2Q_027	1/A/641:642, 1/A/731:733	NA	NA
28	IL_7V2Q_028	1/A/646:650, 1/A/724:727	NA	NA
29	IL_7V2Q_029	1/A/657:662, 1/A/696:701	NA	NA
30	IL_7V2Q_030	1/A/667:672, 1/A/683:691	NA	NA
31	IL_7V2Q_031	1/A/758:762, 1/A/788:789	NA	NA
32	IL_7V2Q_032	1/A/763:767, 1/A/783:787	NA	NA
33	IL_7V2Q_033	1/A/865:872, 1/A/883:888	NA	NA
34	IL_7V2Q_034	1/A/902:908, 1/A/1370:1375	NA	NA
35	IL_7V2Q_035	1/A/911:913, 1/A/1363:1367	NA	NA
36	IL_7V2Q_036	1/A/931:932, 1/A/1208:1210	NA	NA
37	IL_7V2Q_037	1/A/971:975, 1/A/1027:1028	NA	NA
38	IL_7V2Q_039	1/A/1031:1033, 1/A/1190:1191	NA	NA
39	IL_7V2Q_040	1/A/1035:1039, 1/A/1186:1188	NA	NA
40	IL_7V2Q_041	1/A/1040:1041, 1/A/1181:1185	NA	NA
41	IL_7V2Q_042	1/A/1043:1044, 1/A/1177:1179	NA	NA
42	IL_7V2Q_043	1/A/1044:1046, 1/A/1175:1177	NA	NA
43	IL_7V2Q_044	1/A/1107:1110, 1/A/1128:1132	NA	NA
44	IL_7V2Q_045	1/A/1112:1115, 1/A/1125:1126	NA	NA
45	IL_7V2Q_046	1/A/1229:1235, 1/A/1266:1272	NA	NA
46	IL_7V2Q_047	1/A/1237:1240, 1/A/1259:1264	NA	NA
47	IL_7V2Q_048	1/A/1241:1244, 1/A/1255:1258	NA	NA
48	IL_7V2Q_049	1/A/1285:1290, 1/A/1311:1316	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_7V2Q_038	missing nts	NA

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	J3_7V2Q_001	1/A/47:48, 1/A/357:365, 1/A/388:391	NA	NA
2	J3_7V2Q_002	1/A/570:572, 1/A/635:638, 1/A/738:739	NA	NA
3	J3_7V2Q_003	1/A/656:657, 1/A/701:709, 1/A/716:718	NA	NA
4	J3_7V2Q_004	1/A/810:813, 1/A/835:839, 1/A/846:852	NA	NA
5	J3_7V2Q_005	1/A/921:924, 1/A/1217:1219, 1/A/1319:1322	NA	NA
6	J3_7V2Q_006	1/A/933:940, 1/A/951:962, 1/A/1203:1207	NA	NA
7	J3_7V2Q_007	1/A/968:971, 1/A/1028:1030, 1/A/1192:1197	NA	NA
8	J3_7V2Q_009	1/A/1046:1051, 1/A/1090:1096, 1/A/1169:1175	NA	NA
9	J3_7V2Q_010	1/A/1056:1057, 1/A/1066:1070, 1/A/1081:1085	NA	NA
10	J3_7V2Q_011	1/A/1099:1101, 1/A/1138:1144, 1/A/1157:1166	NA	NA
11	J3_7V2Q_012	1/A/1219:1223, 1/A/1278:1285, 1/A/1316:1319	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	J3_7V2Q_008	missing nts	NA

Coloring options: Nucleotide numbers

7V2Q Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops