7WTM Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7WTM_001 | 1/C2/7:17 | No text annotation Not in a motif group | ||
| HL_7WTM_003 | 1/C2/154:160 | Other HL Not in a motif group | geometric HL_4V88_188 HL_43074.18 | |
| HL_7WTM_004 | 1/C2/190:195 | No text annotation Not in a motif group | ||
| HL_7WTM_005 | 1/C2/230:235 | No text annotation Not in a motif group | geometric HL_4V88_190 HL_37407.2 | |
| HL_7WTM_006 | 1/C2/243:250 | T-loop with 1 bulged base Not in a motif group | geometric HL_4V88_191 HL_68493.6 | |
| HL_7WTM_007 | 1/C2/276:279 | No text annotation Not in a motif group | geometric HL_4V88_192 HL_69353.7 | |
| HL_7WTM_008 | 1/C2/330:338 | No text annotation Not in a motif group | geometric HL_4V88_193 HL_93727.5 | |
| HL_7WTM_009 | 1/C2/368:373 | No text annotation Not in a motif group | geometric HL_4V88_194 HL_18785.1 | |
| HL_7WTM_010 | 1/C2/393:404 | No text annotation Not in a motif group | geometric HL_4V88_195 HL_22443.1 | |
| HL_7WTM_011 | 1/C2/414:419 | UNCG Not in a motif group | geometric HL_5ML7_002 HL_79299.11 | |
| HL_7WTM_012 | 1/C2/450:456 | No text annotation Not in a motif group | geometric HL_4WF9_011 HL_98557.5 | |
| HL_7WTM_014 | 1/C2/520:532 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_17086.2 | |
| HL_7WTM_015 | 1/C2/569:574 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_40469.1 | |
| HL_7WTM_017 | 1/C2/764:772 | No text annotation Not in a motif group | geometric HL_4V88_203 HL_72066.1 | |
| HL_7WTM_018 | 1/C2/777:783 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_98557.5 | |
| HL_7WTM_019 | 1/C2/829:843 | No text annotation Not in a motif group | geometric HL_4V88_205 HL_03603.1 | |
| HL_7WTM_020 | 1/C2/900:909 | No text annotation Not in a motif group | geometric HL_4V88_206 HL_87219.4 | |
| HL_7WTM_021 | 1/C2/937:942 | Other HL Not in a motif group | geometric HL_4V88_207 HL_43074.18 | |
| HL_7WTM_022 | 1/C2/997:1007 | No text annotation Not in a motif group | ||
| HL_7WTM_023 | 1/C2/1055:1064 | No text annotation Not in a motif group | geometric HL_4V88_209 HL_32255.1 | |
| HL_7WTM_024 | 1/C2/1084:1089 | Other HL Not in a motif group | geometric HL_4V88_210 HL_43074.18 | |
| HL_7WTM_025 | 1/C2/1121:1126 | GNRA Not in a motif group | geometric HL_4V88_211 HL_43074.18 | |
| HL_7WTM_026 | 1/C2/1778:1783 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_98557.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7WTM_002 | No text annotation | ||
| HL_7WTM_013 | No text annotation | ||
| HL_7WTM_016 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7WTM_001 | 1/C2/24:26, 1/C2/600:601 | Single bulged C Not in a motif group | geometric IL_4V88_384 IL_61258.10 | |
| IL_7WTM_002 | 1/C2/35:37, 1/C2/471:473 | UC cWW Not in a motif group | geometric IL_4V88_385 IL_01312.13 | |
| IL_7WTM_003 | 1/C2/37:41, 1/C2/466:471 | No text annotation Not in a motif group | geometric IL_4V88_386 IL_53318.1 | |
| IL_7WTM_004 | 1/C2/42:48, 1/C2/431:433 | No text annotation Not in a motif group | geometric IL_4V88_387 IL_34626.4 | |
| IL_7WTM_005 | 1/C2/50:52, 1/C2/428:429 | Minor groove platform Not in a motif group | geometric IL_4LFB_004 IL_06437.11 | |
| IL_7WTM_006 | 1/C2/58:63, 1/C2/87:89 | No text annotation Not in a motif group | geometric IL_4V88_389 IL_96451.1 | |
| IL_7WTM_007 | 1/C2/64:69, 1/C2/82:86 | No text annotation Not in a motif group | geometric IL_4V88_390 IL_59423.1 | |
| IL_7WTM_008 | 1/C2/109:112, 1/C2/302:305 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_391 IL_85877.10 | |
| IL_7WTM_009 | 1/C2/113:116, 1/C2/300:301 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_13730.12 | |
| IL_7WTM_010 | 1/C2/117:122, 1/C2/295:299 | No text annotation Not in a motif group | geometric IL_4V88_393 IL_76386.1 | |
| IL_7WTM_011 | 1/C2/144:149, 1/C2/165:171 | tWH-tWH-tHW-tHW Not in a motif group | geometric IL_4LFB_009 IL_87677.1 | |
| IL_7WTM_012 | 1/C2/150:152, 1/C2/162:164 | No text annotation Not in a motif group | geometric IL_1SI2_002 IL_68722.1 | |
| IL_7WTM_013 | 1/C2/186:190, 1/C2/195:199 | No text annotation Not in a motif group | ||
| IL_7WTM_014 | 1/C2/204:206, 1/C2/259:263 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V88_397 IL_95485.6 | |
| IL_7WTM_015 | 1/C2/206:208, 1/C2/257:259 | No text annotation Not in a motif group | geometric IL_3TD0_001 IL_01312.13 | |
| IL_7WTM_016 | 1/C2/265:267, 1/C2/288:289 | Single bulged A Not in a motif group | geometric IL_4V88_399 IL_80007.16 | |
| IL_7WTM_017 | 1/C2/270:273, 1/C2/283:285 | No text annotation Not in a motif group | geometric IL_4V88_400 IL_05922.1 | |
| IL_7WTM_018 | 1/C2/275:276, 1/C2/279:281 | Single bulged U Not in a motif group | geometric IL_5FQ5_002 IL_83039.11 | |
| IL_7WTM_019 | 1/C2/311:316, 1/C2/348:355 | Kink-turn with non-sequential stacking Not in a motif group | geometric IL_4V88_402 IL_29549.9 | |
| IL_7WTM_020 | 1/C2/318:323, 1/C2/345:346 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_98882.3 | |
| IL_7WTM_021 | 1/C2/363:365, 1/C2/376:381 | No text annotation Not in a motif group | geometric IL_4V88_404 IL_46732.1 | |
| IL_7WTM_022 | 1/C2/389:391, 1/C2/406:408 | Isolated cWH basepair Not in a motif group | geometric IL_6IA2_003 IL_42589.6 | |
| IL_7WTM_023 | 1/C2/411:413, 1/C2/420:422 | Isolated near basepair Not in a motif group | geometric IL_3NJ7_004 IL_42589.6 | |
| IL_7WTM_024 | 1/C2/439:441, 1/C2/463:464 | Single bulged U Not in a motif group | geometric IL_4V88_407 IL_83039.11 | |
| IL_7WTM_025 | 1/C2/443:447, 1/C2/460:461 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_08376.2 | |
| IL_7WTM_026 | 1/C2/447:448, 1/C2/458:460 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_59137.10 | |
| IL_7WTM_027 | 1/C2/481:482, 1/C2/505:507 | Single bulged A Not in a motif group | geometric IL_4V88_409 IL_80007.16 | |
| IL_7WTM_028 | 1/C2/514:516, 1/C2/536:543 | No text annotation Not in a motif group | ||
| IL_7WTM_029 | 1/C2/517:518, 1/C2/533:535 | Minor groove platform Not in a motif group | geometric IL_4V88_388 IL_06437.11 | |
| IL_7WTM_030 | 1/C2/518:520, 1/C2/532:533 | Minor groove platform Not in a motif group | geometric IL_4V88_412 IL_06437.11 | |
| IL_7WTM_031 | 1/C2/550:557, 1/C2/587:588 | SSU/LSU pseudoknot Not in a motif group | geometric IL_4V88_413 IL_15861.6 | |
| IL_7WTM_032 | 1/C2/557:559, 1/C2/586:587 | Single bulged U Not in a motif group | geometric IL_3TZR_002 IL_83039.11 | |
| IL_7WTM_033 | 1/C2/562:563, 1/C2/580:583 | Multiple bulged bases Not in a motif group | geometric IL_7V9E_001 IL_13730.12 | |
| IL_7WTM_034 | 1/C2/563:564, 1/C2/578:580 | No text annotation Not in a motif group | ||
| IL_7WTM_035 | 1/C2/566:568, 1/C2/575:576 | Single bulged A Not in a motif group | geometric IL_4R4V_004 IL_80007.16 | |
| IL_7WTM_036 | 1/C2/624:626, 1/C2/973:975 | No text annotation Not in a motif group | geometric IL_4V88_417 IL_01312.13 | |
| IL_7WTM_037 | 1/C2/627:631, 1/C2/968:972 | tSH-tHW-tHS Not in a motif group | geometric IL_4V88_418 IL_39521.5 | |
| IL_7WTM_038 | 1/C2/646:648, 1/C2/686:688 | Isolated cWS basepair Not in a motif group | geometric IL_5TBW_047 IL_67621.5 | |
| IL_7WTM_039 | 1/C2/703:705, 1/C2/734:735 | No text annotation Not in a motif group | ||
| IL_7WTM_040 | 1/C2/746:747, 1/C2/802:805 | Major groove minor groove platform; mini C-loop Not in a motif group | geometric IL_4V88_423 IL_09061.4 | |
| IL_7WTM_041 | 1/C2/748:750, 1/C2/799:801 | No text annotation Not in a motif group | geometric IL_4V88_424 IL_01312.13 | |
| IL_7WTM_042 | 1/C2/751:759, 1/C2/791:798 | No text annotation Not in a motif group | geometric IL_4V88_425 IL_69091.1 | |
| IL_7WTM_043 | 1/C2/819:822, 1/C2/850:852 | No text annotation Not in a motif group | geometric IL_4V88_426 IL_01312.13 | |
| IL_7WTM_044 | 1/C2/865:866, 1/C2/962:965 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V88_428 IL_70995.6 | |
| IL_7WTM_045 | 1/C2/868:869, 1/C2/958:960 | Single bulged U Not in a motif group | geometric IL_7KVT_002 IL_83039.11 | |
| IL_7WTM_046 | 1/C2/871:874, 1/C2/953:956 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_85877.10 | |
| IL_7WTM_047 | 1/C2/874:878, 1/C2/950:953 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_431 IL_85877.10 | |
| IL_7WTM_048 | 1/C2/885:888, 1/C2/924:927 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_432 IL_85877.10 | |
| IL_7WTM_049 | 1/C2/893:895, 1/C2/917:919 | No text annotation Not in a motif group | geometric IL_3GM7_002 IL_01312.13 | |
| IL_7WTM_050 | 1/C2/895:899, 1/C2/910:917 | Kink-turn Not in a motif group | geometric IL_4V88_434 IL_29549.9 | |
| IL_7WTM_051 | 1/C2/985:990, 1/C2/1014:1016 | Other IL Not in a motif group | geometric IL_4V88_435 IL_51590.1 | |
| IL_7WTM_052 | 1/C2/990:994, 1/C2/1010:1014 | tSH-tHW-tHS Not in a motif group | geometric IL_4V88_436 IL_39521.5 | |
| IL_7WTM_053 | 1/C2/1034:1036, 1/C2/1095:1101 | No text annotation Not in a motif group | geometric IL_4V88_437 IL_19557.1 | |
| IL_7WTM_054 | 1/C2/1041:1044, 1/C2/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_438 IL_85877.10 | |
| IL_7WTM_055 | 1/C2/1051:1053, 1/C2/1066:1067 | Single bulged U Not in a motif group | geometric IL_4V88_439 IL_83039.11 | |
| IL_7WTM_056 | 1/C2/1111:1118, 1/C2/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | geometric IL_4V88_440 IL_24606.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7WTM_001 | 1/C2/41:42, 1/C2/433:439, 1/C2/464:466 | No text annotation Not in a motif group | ||
| J3_7WTM_002 | 1/C2/633:635, 1/C2/861:865, 1/C2/965:966 | No text annotation Not in a motif group | ||
| J3_7WTM_003 | 1/C2/760:763, 1/C2/773:775, 1/C2/785:790 | No text annotation Not in a motif group | ||
| J3_7WTM_004 | 1/C2/881:884, 1/C2/928:936, 1/C2/943:947 | No text annotation Not in a motif group | ||
| J3_7WTM_005 | 1/C2/1037:1039, 1/C2/1079:1083, 1/C2/1090:1094 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
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