Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/1/194:201T-loop with 1 bulged base
geometric
HL_4V9F_010
NA

HL_68493.6*
1/1/208:212
geometric
HL_4WF9_011
NA

HL_98557.5*
1/1/216:224
geometric
HL_5TBW_007
NA

HL_08002.6*
1/1/599:604Other HL
geometric
HL_5J7L_180
NA

HL_43074.18*
1/1/3194:3197
geometric
HL_5TBW_068
NA

HL_46546.1*
1/2/36:41NANA
1/2/88:93NANA
1/3/68:91NANA
1/3/108:114
geometric
HL_1WZ2_007
NA

HL_05692.1*
1/3/124:129
geometric
HL_2Y8W_001
NA

HL_69459.1*

Problematic loops

#loop idProblemSequence
HL_7Z34_001
geometric
HL_5TBW_001
HL_7Z34_002
geometric
HL_5TBW_002
HL_7Z34_003
geometric
HL_4WF9_008
HL_7Z34_004
geometric
HL_6U8D_003
HL_7Z34_008
geometric
HL_5TBW_008
HL_7Z34_009
geometric
HL_5TBW_009
HL_7Z34_010
geometric
HL_5TBW_006
HL_7Z34_011Other HL
geometric
HL_4C7O_001
HL_7Z34_012NA
HL_7Z34_013NA
HL_7Z34_015T-loop with 2 stacked bulged bases
geometric
HL_5TBW_014
HL_7Z34_016
geometric
HL_5TBW_015
HL_7Z34_017Other HL
geometric
HL_5TBW_048
HL_7Z34_018
geometric
HL_4WF9_011
HL_7Z34_019
geometric
HL_5TBW_018
HL_7Z34_020
geometric
HL_7RQB_035
HL_7Z34_021
geometric
HL_5TBW_020
HL_7Z34_022
geometric
HL_5TBW_021
HL_7Z34_023NA
HL_7Z34_024NA
HL_7Z34_025
geometric
HL_5TBW_024
HL_7Z34_026Other HL
geometric
HL_1G1X_004
HL_7Z34_027
geometric
HL_5NFV_001
HL_7Z34_028
geometric
HL_5NFV_001
HL_7Z34_029
geometric
HL_5D8H_002
HL_7Z34_030
geometric
HL_4WF9_037
HL_7Z34_031
geometric
HL_5TBW_006
HL_7Z34_032T-loop with 2 stacked bulged bases
geometric
HL_5TBW_031
HL_7Z34_033
geometric
HL_1ZBH_001
HL_7Z34_034
geometric
HL_7RQB_044
HL_7Z34_035
geometric
HL_2Y8Y_001
HL_7Z34_036
geometric
HL_5TBW_035
HL_7Z34_037
geometric
HL_5NFV_001
HL_7Z34_038
geometric
HL_5TBW_037
HL_7Z34_039
geometric
HL_5TBW_038
HL_7Z34_040
geometric
HL_4WF9_003
HL_7Z34_041
geometric
HL_4V88_192
HL_7Z34_042
geometric
HL_1WZ2_007
HL_7Z34_043GNRA with one bulged base
geometric
HL_5TBW_042
HL_7Z34_044UNCG
geometric
HL_4WF9_040
HL_7Z34_045
geometric
HL_2Y8W_001
HL_7Z34_046NA
HL_7Z34_047NA
HL_7Z34_048
geometric
HL_5TBW_046
HL_7Z34_049Other HL
geometric
HL_4KQY_002
HL_7Z34_050
geometric
HL_4WF9_011
HL_7Z34_051NA
HL_7Z34_052NA
HL_7Z34_053
geometric
HL_5TBW_051
HL_7Z34_054NA
HL_7Z34_055NA
HL_7Z34_056
geometric
HL_5TBW_012
HL_7Z34_057
geometric
HL_7A0S_052
HL_7Z34_058
geometric
HL_4WF9_050
HL_7Z34_059NA
HL_7Z34_060
geometric
HL_5TBW_057
HL_7Z34_061
geometric
HL_5TBW_058
HL_7Z34_062
geometric
HL_7A0S_047
HL_7Z34_063
geometric
HL_5TBW_060
HL_7Z34_064NA
HL_7Z34_065
geometric
HL_4WF9_011
HL_7Z34_066
geometric
HL_5NFV_001
HL_7Z34_067
geometric
HL_4WF9_003
HL_7Z34_068
geometric
HL_5J7L_179
HL_7Z34_069
geometric
HL_6UFM_005
HL_7Z34_070
geometric
HL_4V9F_068
HL_7Z34_072NA
HL_7Z34_073
geometric
HL_5TBW_070
HL_7Z34_074
geometric
HL_7RQB_009

Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/1/337:339,
1/3/25:26
Single bulged A
geometric
IL_5TBW_013
NA

IL_80007.16*
1/1/376:379,
1/1/390:403

geometric
IL_5TBW_014
NA

IL_60992.5*
1/1/404:410,
1/3/13:19
Triple sheared with non-canonical cWW
geometric
IL_5TBW_015
NA

IL_66414.5*
1/1/511:513,
1/1/577:580

geometric
IL_1L9A_003
NA

IL_01312.13*
1/1/517:525,
1/1/567:573

geometric
IL_5TBW_019
NA

IL_41593.1*
1/1/530:539,
1/1/552:562
NANA
1/1/680:684,
1/1/696:700

geometric
IL_5TBW_022
NA

IL_92343.1*
1/1/954:956,
1/1/965:967

geometric
IL_5TBW_034
NA

IL_01312.13*
1/1/969:970,
1/1/1111:1113
Single stack bend
geometric
IL_7KGA_006
NA

IL_06437.11*
1/1/983:985,
1/1/1099:1100
Single bulged G
geometric
IL_5TBW_037
NA

IL_59137.10*
1/1/1120:1122,
1/1/1136:1138

geometric
IL_5TBW_046
NA

IL_01312.13*
1/1/1167:1171,
1/1/1328:1332
UAA/GAN
geometric
IL_5TBW_048
NA

IL_53523.5*
1/1/1173:1182,
1/1/1324:1326

geometric
IL_1RPU_001
NA

IL_01312.13*
1/1/1376:1378,
1/1/1428:1431
Isolated cWS basepair
geometric
IL_5TBW_057
NA

IL_01312.13*
1/1/1385:1387,
1/1/1420:1421
Single bulged A
geometric
IL_5TBW_058
NA

IL_80007.16*
1/1/3177:3179,
1/1/3210:3211
Single bulged A
geometric
IL_6WPI_001
NA

IL_80007.16*
1/1/3179:3188,
1/1/3204:3210
NANA
1/1/3193:3194,
1/1/3197:3199
Single bulged U
geometric
IL_5J7L_298
NA

IL_83039.11*
1/2/15:16,
1/2/63:65
NANA
1/2/21:27,
1/2/53:58
NANA
1/2/28:29,
1/2/49:52
NANA
1/2/29:30,
1/2/47:49
NANA
1/2/32:36,
1/2/41:45
NANA
1/2/72:80,
1/2/100:106
NANA
1/2/84:87,
1/2/94:96
NANA
1/3/44:64,
1/3/96:100

geometric
IL_5TBW_144
NA

IL_23735.1*
1/3/64:66,
1/3/93:96
Isolated non-canonical cWW with bulges
geometric
IL_5TBW_145
NA

IL_55456.1*

Problematic loops

#loop idProblemSequence
IL_7Z34_001Single bulged C
geometric
IL_5TBW_002
IL_7Z34_002Single bulged U
geometric
IL_5TBW_003
IL_7Z34_003tSH-tHW-tHH-tHS
geometric
IL_5TBW_005
IL_7Z34_004
geometric
IL_5TBW_006
IL_7Z34_005
geometric
IL_5TBW_007
IL_7Z34_006
geometric
IL_5TBW_008
IL_7Z34_007Single stack bend
geometric
IL_5TBW_009
IL_7Z34_008NA
IL_7Z34_009
geometric
IL_4WSM_372
IL_7Z34_010NA
IL_7Z34_011Single bulged U
geometric
IL_4V9F_013
IL_7Z34_015
geometric
IL_5TBW_016
IL_7Z34_016NA
IL_7Z34_020
geometric
IL_5TBW_021
IL_7Z34_022UAA/GAN
geometric
IL_5TBW_023
IL_7Z34_023Single bulged A
geometric
IL_5TBW_024
IL_7Z34_024Single bulged U
geometric
IL_5TBW_025
IL_7Z34_025
geometric
IL_5TBW_026
IL_7Z34_026
geometric
IL_4WF9_020
IL_7Z34_027
geometric
IL_5TBW_028
IL_7Z34_028
geometric
IL_4LFB_055
IL_7Z34_029Major groove platform with extra cWW
geometric
IL_5TBW_031
IL_7Z34_030Single bulged U
geometric
IL_4LFB_046
IL_7Z34_031Multiple bulged bases
geometric
IL_7A0S_021
IL_7Z34_034NA
IL_7Z34_036
geometric
IL_5TBW_046
IL_7Z34_037Single bulged A
geometric
IL_5TBW_045
IL_7Z34_041
geometric
IL_5TBW_051
IL_7Z34_042
geometric
IL_5TBW_052
IL_7Z34_043Single bulged U
geometric
IL_3MEI_001
IL_7Z34_044NA
IL_7Z34_045NA
IL_7Z34_046Major groove platform with extra cWW
geometric
IL_5D8H_003
IL_7Z34_049Kink-turn
geometric
IL_5TBW_059
IL_7Z34_050Single bulged A
geometric
IL_4V88_399
IL_7Z34_0517x6 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_061
IL_7Z34_052
geometric
IL_5TBW_062
IL_7Z34_053UAA/GAN
geometric
IL_5TBW_063
IL_7Z34_054NA
IL_7Z34_055NA
IL_7Z34_056NA
IL_7Z34_057
geometric
IL_5TBW_066
IL_7Z34_058
geometric
IL_5TBW_127
IL_7Z34_059Single bulged C
geometric
IL_5TBW_069
IL_7Z34_060Single stack bend
geometric
IL_4WF9_007
IL_7Z34_061
geometric
IL_5TBW_071
IL_7Z34_062NA
IL_7Z34_063Kink-turn
geometric
IL_5TBW_073
IL_7Z34_064NA
IL_7Z34_065Isolated tWW turn
geometric
IL_4WF9_063
IL_7Z34_066NA
IL_7Z34_067tSH-tSH-tHH-tHS
geometric
IL_7RQB_068
IL_7Z34_068UG cWW
geometric
IL_4LFB_061
IL_7Z34_069NA
IL_7Z34_070Minor groove platform
geometric
IL_6DLR_003
IL_7Z34_071Tandem non-canonical cWW pairs
geometric
IL_5TBW_041
IL_7Z34_072Isolated cWH basepair
geometric
IL_4E5C_001
IL_7Z34_073Single bulged A
geometric
IL_5TBW_082
IL_7Z34_074Kink-turn related
geometric
IL_5TBW_083
IL_7Z34_075Major groove outside cWW, minor groove, intercalation pocket
geometric
IL_4V9F_066
IL_7Z34_076NA
IL_7Z34_077Single bulged U
geometric
IL_6MWN_006
IL_7Z34_078NA
IL_7Z34_079NA
IL_7Z34_080NA
IL_7Z34_081Major groove platform with extra pair
geometric
IL_5TBW_091
IL_7Z34_082Minor groove platform with intercalation
geometric
IL_5TBW_092
IL_7Z34_083Single bulged U
geometric
IL_5J7L_017
IL_7Z34_084Minor groove platform
geometric
IL_5TBW_094
IL_7Z34_085Double sheared
geometric
IL_4XWF_001
IL_7Z34_086Minor groove platform
geometric
IL_7A0S_028
IL_7Z34_087NA
IL_7Z34_088NA
IL_7Z34_089
geometric
IL_5TBW_096
IL_7Z34_090Single bulged A
geometric
IL_4WF9_098
IL_7Z34_091Isolated tHS basepair with bulges
geometric
IL_4WF9_086
IL_7Z34_092NA
IL_7Z34_093Single stack bend
geometric
IL_4V9F_081
IL_7Z34_094NA
IL_7Z34_095NA
IL_7Z34_096NA
IL_7Z34_097Single bulged A
geometric
IL_5TBW_113
IL_7Z34_098Double sheared
geometric
IL_5TBW_114
IL_7Z34_099
geometric
IL_5ZTM_002
IL_7Z34_1008x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
IL_7Z34_101Major groove minor groove platform with tHH
geometric
IL_4WF9_050
IL_7Z34_102UAA/GAN related
geometric
IL_5TBW_118
IL_7Z34_103Multiple bulged bases
geometric
IL_5TBW_119
IL_7Z34_104NA
IL_7Z34_108NA
IL_7Z34_109Other IL
geometric
IL_4WF9_084
IL_7Z34_110Tandem non-canonical cWW pairs
geometric
IL_3R2D_002
IL_7Z34_111Tandem non-canonical cWW pairs
geometric
IL_5TBW_128
IL_7Z34_112Single bulged U
geometric
IL_7RQB_080
IL_7Z34_113Single bulged U
geometric
IL_5TBW_131
IL_7Z34_114Isolated non-canonical cWW with bulges
geometric
IL_4PKD_001
IL_7Z34_115
geometric
IL_4V9F_099
IL_7Z34_116NA
IL_7Z34_117Multiple bulged bases
geometric
IL_7V9E_001

Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/1/501:503,
1/1/588:597,
1/1/606:612
NANA
1/2/9:14,
1/2/66:67,
1/2/111:112
NANA

Problematic loops

#loop idProblemSequence
J3_7Z34_001NA
J3_7Z34_002NA
J3_7Z34_004NA
J3_7Z34_005NA
J3_7Z34_006NA
J3_7Z34_007NA
J3_7Z34_008NA
J3_7Z34_009NA
J3_7Z34_010NA
J3_7Z34_011NA
J3_7Z34_012NA
J3_7Z34_013NA
J3_7Z34_014NA
J3_7Z34_015NA
J3_7Z34_016NA

Coloring options:
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