Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8CMJ_0011/AA/38:45No text annotation
Not in a motif group
homologous
HL_8C3A_001
HL_06192.2
HL_8CMJ_0021/AA/69:74No text annotation
Not in a motif group
homologous
HL_8C3A_002
HL_02862.2
HL_8CMJ_0031/AA/90:96No text annotation
Not in a motif group
homologous
HL_8C3A_003
HL_67216.7
HL_8CMJ_0041/AA/132:136No text annotation
Not in a motif group
homologous
HL_8C3A_004
HL_98426.1
HL_8CMJ_0051/AA/194:201No text annotation
Not in a motif group
homologous
HL_8C3A_005
HL_89380.2
HL_8CMJ_0061/AA/208:212No text annotation
Not in a motif group
homologous
HL_8C3A_006
HL_98984.2
HL_8CMJ_0071/AA/216:224No text annotation
Not in a motif group
homologous
HL_8C3A_007
HL_08002.8
HL_8CMJ_0081/AA/278:287No text annotation
Not in a motif group
homologous
HL_8C3A_008
HL_71554.2
HL_8CMJ_0091/AA/303:312No text annotation
Not in a motif group
homologous
HL_8C3A_009
HL_12078.2
HL_8CMJ_0101/AA/357:362No text annotation
Not in a motif group
homologous
HL_8C3A_010
HL_42097.1
HL_8CMJ_0111/AA/382:387No text annotation
Not in a motif group
homologous
HL_8C3A_011
HL_42097.1
HL_8CMJ_0121/AA/544:547No text annotation
Not in a motif group
HL_8CMJ_0131/AA/599:604No text annotation
Not in a motif group
homologous
HL_8C3A_013
HL_56691.2
HL_8CMJ_0141/AA/638:651No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_76539.2
HL_8CMJ_0151/AA/686:694No text annotation
Not in a motif group
homologous
HL_8C3A_015
HL_03345.1
HL_8CMJ_0161/AA/707:712No text annotation
Not in a motif group
homologous
HL_8C3A_016
HL_42097.1
HL_8CMJ_0171/AA/732:737No text annotation
Not in a motif group
geometric
HL_3OXE_002
HL_42097.1
HL_8CMJ_0181/AA/763:768No text annotation
Not in a motif group
geometric
HL_5TBW_018
HL_34168.2
HL_8CMJ_0191/AA/844:849No text annotation
Not in a motif group
homologous
HL_8C3A_019
HL_42097.1
HL_8CMJ_0201/AA/875:886No text annotation
Not in a motif group
HL_8CMJ_0211/AA/910:918No text annotation
Not in a motif group
homologous
HL_8C3A_021
HL_33817.1
HL_8CMJ_0221/AA/958:963No text annotation
Not in a motif group
homologous
HL_8C3A_022
HL_96598.1
HL_8CMJ_0231/AA/1023:1029No text annotation
Not in a motif group
geometric
HL_5J7L_025
HL_03562.2
HL_8CMJ_0241/AA/1076:1083No text annotation
Not in a motif group
homologous
HL_8C3A_024
HL_71554.2
HL_8CMJ_0251/AA/1126:1132No text annotation
Not in a motif group
homologous
HL_8C3A_025
HL_42097.1
HL_8CMJ_0261/AA/1148:1155No text annotation
Not in a motif group
homologous
HL_8C3A_026
HL_64430.2
HL_8CMJ_0271/AA/1239:1249No text annotation
Not in a motif group
homologous
HL_8C3A_027
HL_07145.1
HL_8CMJ_0281/AA/1267:1274No text annotation
Not in a motif group
homologous
HL_8C3A_028
HL_84085.2
HL_8CMJ_0291/AA/1347:1357No text annotation
Not in a motif group
HL_8CMJ_0301/AA/1403:1408No text annotation
Not in a motif group
homologous
HL_8C3A_030
HL_42097.1
HL_8CMJ_0311/AA/1462:1470No text annotation
Not in a motif group
homologous
HL_8C3A_031
HL_89380.2
HL_8CMJ_0321/AA/1506:1512No text annotation
Not in a motif group
homologous
HL_8C3A_032
HL_46680.1
HL_8CMJ_0331/AA/1544:1549No text annotation
Not in a motif group
homologous
HL_8C3A_033
HL_76539.2
HL_8CMJ_0341/AA/1563:1577No text annotation
Not in a motif group
HL_8CMJ_0351/AA/1599:1608No text annotation
Not in a motif group
homologous
HL_8C3A_035
HL_69023.2
HL_8CMJ_0361/AA/1634:1639No text annotation
Not in a motif group
homologous
HL_8C3A_036
HL_42097.1
HL_8CMJ_0371/AA/1680:1688No text annotation
Not in a motif group
homologous
HL_8C3A_037
HL_60812.1
HL_8CMJ_0381/AA/1719:1725No text annotation
Not in a motif group
homologous
HL_8C3A_038
HL_86373.2
HL_8CMJ_0391/AA/1760:1765No text annotation
Not in a motif group
geometric
HL_4YAZ_004
HL_56691.2
HL_8CMJ_0401/AA/1792:1796No text annotation
Not in a motif group
homologous
HL_8C3A_040
HL_49678.1
HL_8CMJ_0411/AA/1844:1851No text annotation
Not in a motif group
homologous
HL_8C3A_041
HL_64430.2
HL_8CMJ_0421/AA/1862:1868No text annotation
Not in a motif group
homologous
HL_8C3A_042
HL_42097.1
HL_8CMJ_0431/AA/1923:1928UNCG
Not in a motif group
geometric
HL_4PMI_004
HL_03562.2
HL_8CMJ_0441/AA/1952:2094No text annotation
Not in a motif group
homologous
HL_5TBW_044
HL_09829.1
HL_8CMJ_0451/AA/2110:2114No text annotation
Not in a motif group
homologous
HL_8C3A_045
HL_20062.1
HL_8CMJ_0461/AA/2135:2145No text annotation
Not in a motif group
homologous
HL_8C3A_046
HL_43613.5
HL_8CMJ_0471/AA/2164:2170No text annotation
Not in a motif group
homologous
HL_8C3A_047
HL_42097.1
HL_8CMJ_0481/AA/2219:2226No text annotation
Not in a motif group
geometric
HL_4WF9_041
HL_49288.1
HL_8CMJ_0491/AA/2253:2263No text annotation
Not in a motif group
homologous
HL_8C3A_049
HL_71924.2
HL_8CMJ_0501/AA/2292:2300No text annotation
Not in a motif group
homologous
HL_8C3A_050
HL_51824.1
HL_8CMJ_0511/AA/2369:2378No text annotation
Not in a motif group
homologous
HL_8C3A_051
HL_90642.6
HL_8CMJ_0521/AA/2469:2476No text annotation
Not in a motif group
homologous
HL_8C3A_052
HL_70228.1
HL_8CMJ_0531/AA/2533:2546No text annotation
Not in a motif group
HL_8CMJ_0541/AA/2568:2573No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_01057.1
HL_8CMJ_0551/AA/2616:2624No text annotation
Not in a motif group
homologous
HL_8C3A_055
HL_53171.2
HL_8CMJ_0561/AA/2633:2645No text annotation
Not in a motif group
homologous
HL_8C3A_056
HL_19870.6
HL_8CMJ_0571/AA/2673:2681No text annotation
Not in a motif group
homologous
HL_8C3A_057
HL_76406.4
HL_8CMJ_0581/AA/2693:2700No text annotation
Not in a motif group
homologous
HL_8C3A_058
HL_12078.2
HL_8CMJ_0591/AA/2723:2733No text annotation
Not in a motif group
HL_8CMJ_0601/AA/2744:2749No text annotation
Not in a motif group
homologous
HL_8C3A_060
HL_42097.1
HL_8CMJ_0611/AA/2776:2784No text annotation
Not in a motif group
homologous
HL_8C3A_061
HL_96598.1
HL_8CMJ_0621/AA/2840:2848No text annotation
Not in a motif group
homologous
HL_8C3A_062
HL_06192.2
HL_8CMJ_0631/AA/2897:2904No text annotation
Not in a motif group
homologous
HL_8C3A_063
HL_88526.2
HL_8CMJ_0641/AA/2920:2926No text annotation
Not in a motif group
homologous
HL_8C3A_064
HL_43656.2
HL_8CMJ_0651/AA/2963:2968No text annotation
Not in a motif group
homologous
HL_8C3A_065
HL_42097.1
HL_8CMJ_0661/AA/3025:3030No text annotation
Not in a motif group
homologous
HL_8C3A_066
HL_42097.1
HL_8CMJ_0671/AA/3068:3073No text annotation
Not in a motif group
homologous
HL_8C3A_067
HL_46680.1
HL_8CMJ_0681/AA/3110:3124No text annotation
Not in a motif group
homologous
HL_8C3A_068
HL_56677.7
HL_8CMJ_0691/AA/3194:3197No text annotation
Not in a motif group
geometric
HL_4V88_192
HL_53837.1
HL_8CMJ_0701/AA/3240:3247No text annotation
Not in a motif group
HL_8CMJ_0711/AA/3303:3311No text annotation
Not in a motif group
homologous
HL_8C3A_071
HL_27930.1
HL_8CMJ_0721/AA/3350:3356No text annotation
Not in a motif group
HL_8CMJ_0731/BB/36:41No text annotation
Not in a motif group
homologous
HL_5TBW_185
HL_87939.1
HL_8CMJ_0741/BB/88:93No text annotation
Not in a motif group
homologous
HL_7A0S_070
HL_42097.1
HL_8CMJ_0751/CC/69:89No text annotation
Not in a motif group
HL_8CMJ_0761/CC/108:114No text annotation
Not in a motif group
homologous
HL_5TBW_075
HL_87939.1
HL_8CMJ_0771/CC/124:129No text annotation
Not in a motif group
homologous
HL_5TBW_076
HL_96851.2
HL_8CMJ_0781/c/7:17No text annotation
Not in a motif group
homologous
HL_4V88_186
HL_89881.2
HL_8CMJ_0791/c/70:81No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_75407.1
HL_8CMJ_0801/c/154:160No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_76539.2
HL_8CMJ_0811/c/185:200No text annotation
Not in a motif group
HL_8CMJ_0821/c/243:250No text annotation
Not in a motif group
geometric
HL_2Y9H_004
HL_52841.1
HL_8CMJ_0831/c/275:281No text annotation
Not in a motif group
HL_8CMJ_0841/c/330:338No text annotation
Not in a motif group
homologous
HL_4V88_193
HL_69023.2
HL_8CMJ_0851/c/368:373No text annotation
Not in a motif group
homologous
HL_4V88_194
HL_50142.2
HL_8CMJ_0861/c/393:404No text annotation
Not in a motif group
homologous
HL_4V88_195
HL_84288.1
HL_8CMJ_0871/c/411:422No text annotation
Not in a motif group
HL_8CMJ_0881/c/450:456No text annotation
Not in a motif group
homologous
HL_4V88_197
HL_09136.1
HL_8CMJ_0891/c/518:533No text annotation
Not in a motif group
HL_8CMJ_0901/c/569:574Other HL
Not in a motif group
homologous
HL_4V88_200
HL_53845.1
HL_8CMJ_0911/c/764:772No text annotation
Not in a motif group
homologous
HL_4V88_203
HL_46766.2
HL_8CMJ_0921/c/777:783No text annotation
Not in a motif group
geometric
HL_6VMY_004
HL_91058.1
HL_8CMJ_0931/c/818:853No text annotation
Not in a motif group
HL_8CMJ_0941/c/900:909No text annotation
Not in a motif group
homologous
HL_4V88_206
HL_12326.1
HL_8CMJ_0951/c/937:942Other HL
Not in a motif group
homologous
HL_4V88_207
HL_87030.2
HL_8CMJ_0961/c/996:1008No text annotation
Not in a motif group
HL_8CMJ_0971/c/1054:1065No text annotation
Not in a motif group
HL_8CMJ_0981/c/1084:1089Other HL
Not in a motif group
homologous
HL_4V88_210
HL_42097.1
HL_8CMJ_0991/c/1120:1127No text annotation
Not in a motif group
geometric
HL_7A0S_056
HL_84085.2
HL_8CMJ_1001/c/1188:1197No text annotation
Not in a motif group
HL_8CMJ_1011/c/1238:1247No text annotation
Not in a motif group
HL_8CMJ_1021/c/1296:1301GNRA
Not in a motif group
homologous
HL_4V88_214
HL_42097.1
HL_8CMJ_1031/c/1309:1316No text annotation
Not in a motif group
homologous
HL_4V88_215
HL_71554.2
HL_8CMJ_1041/c/1359:1364No text annotation
Not in a motif group
HL_8CMJ_1051/c/1396:1402No text annotation
Not in a motif group
geometric
HL_4V88_198
HL_56691.2
HL_8CMJ_1061/c/1500:1507No text annotation
Not in a motif group
HL_8CMJ_1071/c/1549:1562No text annotation
Not in a motif group
HL_8CMJ_1081/c/1594:1602No text annotation
Not in a motif group
homologous
HL_4V88_220
HL_60812.1
HL_8CMJ_1091/c/1685:1716No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_01057.1
HL_8CMJ_1101/c/1778:1783Other HL
Not in a motif group
homologous
HL_4V88_222
HL_16173.1

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8CMJ_0021/AA/7:8,
1/CC/150:152
Single bulged C
Not in a motif group
geometric
IL_5TBW_002
IL_61258.12
IL_8CMJ_0031/AA/13:15,
1/CC/144:145
Single bulged U
Not in a motif group
homologous
IL_5TBW_003
IL_83039.13
IL_8CMJ_0041/AA/27:28,
1/AA/56:58
No text annotation
Not in a motif group
homologous
IL_8C3A_004
IL_76488.2
IL_8CMJ_0051/AA/31:38,
1/AA/45:53
tSH-tHW-tHH-tHS
Not in a motif group
geometric
IL_5TBW_005
IL_35728.2
IL_8CMJ_0061/AA/82:89,
1/AA/97:103
No text annotation
Not in a motif group
homologous
IL_8C3A_006
IL_88613.1
IL_8CMJ_0071/AA/123:124,
1/AA/144:149
No text annotation
Not in a motif group
geometric
IL_5TBW_007
IL_19724.2
IL_8CMJ_0081/AA/125:127,
1/AA/141:143
No text annotation
Not in a motif group
homologous
IL_8C3A_008
IL_95997.1
IL_8CMJ_0091/AA/128:130,
1/AA/138:140
No text annotation
Not in a motif group
geometric
IL_1U9S_007
IL_95997.1
IL_8CMJ_0101/AA/163:165,
1/AA/257:258
Single stack bend
Not in a motif group
geometric
IL_2QWY_008
IL_92001.1
IL_8CMJ_0111/AA/169:172,
1/AA/247:253
No text annotation
Not in a motif group
IL_8CMJ_0121/AA/172:174,
1/AA/244:247
No text annotation
Not in a motif group
geometric
IL_4N0T_004
IL_46796.1
IL_8CMJ_0131/AA/176:178,
1/AA/238:242
8-nt loop receptor
Not in a motif group
geometric
IL_5T83_002
IL_93341.1
IL_8CMJ_0141/AA/189:191,
1/AA/204:205
No text annotation
Not in a motif group
homologous
IL_8C3A_013
IL_83039.13
IL_8CMJ_0151/AA/337:339,
1/CC/25:26
Single bulged A
Not in a motif group
homologous
IL_5TBW_013
IL_37497.2
IL_8CMJ_0161/AA/376:379,
1/AA/390:403
No text annotation
Not in a motif group
homologous
IL_8C3A_015
IL_60992.6
IL_8CMJ_0171/AA/404:410,
1/CC/13:19
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_5TBW_015
IL_66414.6
IL_8CMJ_0181/AA/429:431,
1/AA/628:630
No text annotation
Not in a motif group
geometric
IL_5TBW_016
IL_51629.2
IL_8CMJ_0191/AA/435:495,
1/AA/618:624
No text annotation
Not in a motif group
IL_8CMJ_0201/AA/512:513,
1/AA/577:579
No text annotation
Not in a motif group
homologous
IL_8C3A_020
IL_37497.2
IL_8CMJ_0211/AA/517:525,
1/AA/567:573
No text annotation
Not in a motif group
geometric
IL_5TBW_019
IL_23992.1
IL_8CMJ_0221/AA/531:538,
1/AA/553:561
No text annotation
Not in a motif group
geometric
IL_5TBW_020
IL_07703.1
IL_8CMJ_0231/AA/668:670,
1/AA/792:794
No text annotation
Not in a motif group
homologous
IL_8C3A_023
IL_95997.1
IL_8CMJ_0241/AA/680:684,
1/AA/696:700
No text annotation
Not in a motif group
homologous
IL_8C3A_024
IL_74284.1
IL_8CMJ_0251/AA/725:728,
1/AA/741:745
No text annotation
Not in a motif group
homologous
IL_8C3A_025
IL_07235.1
IL_8CMJ_0261/AA/752:753,
1/AA/779:781
No text annotation
Not in a motif group
homologous
IL_8C3A_026
IL_37497.2
IL_8CMJ_0271/AA/755:756,
1/AA/775:777
No text annotation
Not in a motif group
homologous
IL_8C3A_027
IL_83039.13
IL_8CMJ_0281/AA/758:763,
1/AA/768:773
No text annotation
Not in a motif group
homologous
IL_8C3A_028
IL_19954.2
IL_8CMJ_0291/AA/803:809,
1/AA/931:940
No text annotation
Not in a motif group
IL_8CMJ_0301/AA/826:828,
1/AA/897:899
UG cWW
Not in a motif group
geometric
IL_4LFB_061
IL_95997.1
IL_8CMJ_0311/AA/828:829,
1/AA/895:897
Single bulged A
Not in a motif group
geometric
IL_4V9F_025
IL_37497.2
IL_8CMJ_0321/AA/833:834,
1/AA/859:861
No text annotation
Not in a motif group
homologous
IL_8C3A_032
IL_00225.2
IL_8CMJ_0331/AA/834:838,
1/AA/855:859
Triple sheared
Not in a motif group
geometric
IL_5TBW_030
IL_56467.8
IL_8CMJ_0341/AA/869:872,
1/AA/888:890
No text annotation
Not in a motif group
homologous
IL_8C3A_034
IL_05564.2
IL_8CMJ_0351/AA/873:875,
1/AA/886:887
Single bulged U
Not in a motif group
geometric
IL_5TBW_032
IL_83039.13
IL_8CMJ_0361/AA/907:909,
1/AA/919:923
Multiple bulged bases
Not in a motif group
geometric
IL_5TBW_033
IL_90991.6
IL_8CMJ_0371/AA/954:956,
1/AA/965:967
No text annotation
Not in a motif group
homologous
IL_8C3A_037
IL_95997.1
IL_8CMJ_0381/AA/969:970,
1/AA/1111:1113
No text annotation
Not in a motif group
homologous
IL_8C3A_038
IL_76488.2
IL_8CMJ_0391/AA/977:982,
1/AA/1101:1104
No text annotation
Not in a motif group
IL_8CMJ_0401/AA/983:985,
1/AA/1099:1100
No text annotation
Not in a motif group
homologous
IL_8C3A_040
IL_00225.2
IL_8CMJ_0411/AA/991:997,
1/AA/1052:1058
No text annotation
Not in a motif group
homologous
IL_8C3A_041
IL_93830.3
IL_8CMJ_0421/AA/997:998,
1/AA/1050:1052
Minor groove platform
Not in a motif group
geometric
IL_6DLR_003
IL_42622.2
IL_8CMJ_0431/AA/999:1004,
1/AA/1046:1049
No text annotation
Not in a motif group
homologous
IL_8C3A_043
IL_02509.1
IL_8CMJ_0441/AA/1006:1009,
1/AA/1041:1044
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5TBW_041
IL_30621.2
IL_8CMJ_0451/AA/1009:1011,
1/AA/1039:1041
No text annotation
Not in a motif group
homologous
IL_8C3A_045
IL_95997.1
IL_8CMJ_0461/AA/1014:1019,
1/AA/1033:1036
No text annotation
Not in a motif group
IL_8CMJ_0481/AA/1069:1072,
1/AA/1086:1089
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_3WBM_002
IL_30621.2
IL_8CMJ_0491/AA/1074:1076,
1/AA/1083:1084
Single bulged A
Not in a motif group
geometric
IL_4P43_002
IL_37497.2
IL_8CMJ_0501/AA/1120:1122,
1/AA/1136:1138
No text annotation
Not in a motif group
homologous
IL_8C3A_049
IL_95997.1
IL_8CMJ_0511/AA/1123:1126,
1/AA/1132:1135
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_1MFQ_004
IL_30621.2
IL_8CMJ_0521/AA/1167:1171,
1/AA/1328:1332
No text annotation
Not in a motif group
homologous
IL_8C3A_051
IL_89002.2
IL_8CMJ_0531/AA/1173:1180,
1/AA/1325:1326
No text annotation
Not in a motif group
homologous
IL_8C3A_052
IL_15861.7
IL_8CMJ_0541/AA/1180:1182,
1/AA/1324:1325
Single bulged U
Not in a motif group
geometric
IL_5TBW_050
IL_83039.13
IL_8CMJ_0561/AA/1187:1194,
1/AA/1314:1319
No text annotation
Not in a motif group
homologous
IL_8C3A_054
IL_27086.1
IL_8CMJ_0571/AA/1194:1205,
1/AA/1299:1314
No text annotation
Not in a motif group
geometric
IL_5TBW_052
IL_53762.1
IL_8CMJ_0581/AA/1207:1209,
1/AA/1296:1297
No text annotation
Not in a motif group
homologous
IL_8C3A_056
IL_83039.13
IL_8CMJ_0591/AA/1218:1226,
1/AA/1283:1287
No text annotation
Not in a motif group
homologous
IL_8C3A_057
IL_90538.4
IL_8CMJ_0601/AA/1234:1238,
1/AA/1250:1254
No text annotation
Not in a motif group
homologous
IL_8C3A_058
IL_30542.3
IL_8CMJ_0611/AA/1262:1266,
1/AA/1275:1277
Major groove platform with extra cWW
Not in a motif group
geometric
IL_5D8H_003
IL_05564.2
IL_8CMJ_0621/AA/1376:1378,
1/AA/1428:1431
No text annotation
Not in a motif group
homologous
IL_8C3A_061
IL_52767.2
IL_8CMJ_0631/AA/1385:1387,
1/AA/1420:1421
No text annotation
Not in a motif group
homologous
IL_8C3A_062
IL_37497.2
IL_8CMJ_0641/AA/1388:1395,
1/AA/1415:1419
No text annotation
Not in a motif group
homologous
IL_8C3A_063
IL_70923.2
IL_8CMJ_0651/AA/1398:1400,
1/AA/1411:1412
Single bulged A
Not in a motif group
geometric
IL_5TBW_060
IL_37497.2
IL_8CMJ_0661/AA/1444:1451,
1/AA/2353:2359
8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
Not in a motif group
geometric
IL_4V9F_012
IL_59724.1
IL_8CMJ_0671/AA/1500:1505,
1/AA/1513:1516
No text annotation
Not in a motif group
homologous
IL_8C3A_066
IL_93630.2
IL_8CMJ_0681/AA/1532:1536,
1/AA/1585:1590
No text annotation
Not in a motif group
homologous
IL_8C3A_067
IL_89002.2
IL_8CMJ_0691/AA/1561:1563,
1/AA/1577:1579
No text annotation
Not in a motif group
geometric
IL_5J7L_050
IL_95997.1
IL_8CMJ_0701/AA/1618:1621,
1/AA/1824:1826
No text annotation
Not in a motif group
homologous
IL_8C3A_070
IL_84698.1
IL_8CMJ_0711/AA/1623:1624,
1/AA/1819:1822
Multiple bulged bases
Not in a motif group
geometric
IL_4YAZ_007
IL_76389.1
IL_8CMJ_0721/AA/1627:1631,
1/AA/1811:1816
No text annotation
Not in a motif group
homologous
IL_8C3A_072
IL_48431.1
IL_8CMJ_0731/AA/1645:1649,
1/AA/1806:1810
No text annotation
Not in a motif group
homologous
IL_8C3A_073
IL_56467.8
IL_8CMJ_0741/AA/1661:1663,
1/AA/1786:1788
No text annotation
Not in a motif group
homologous
IL_8C3A_074
IL_95997.1
IL_8CMJ_0751/AA/1663:1665,
1/AA/1784:1786
No text annotation
Not in a motif group
geometric
IL_1NBS_006
IL_95997.1
IL_8CMJ_0761/AA/1669:1670,
1/AA/1778:1780
No text annotation
Not in a motif group
homologous
IL_8C3A_075
IL_61258.12
IL_8CMJ_0771/AA/1670:1671,
1/AA/1776:1778
Single stack bend
Not in a motif group
geometric
IL_5TBW_070
IL_76488.2
IL_8CMJ_0781/AA/1694:1698,
1/AA/1747:1752
No text annotation
Not in a motif group
homologous
IL_8C3A_077
IL_69313.1
IL_8CMJ_0791/AA/1702:1707,
1/AA/1737:1743
No text annotation
Not in a motif group
homologous
IL_8C3A_078
IL_39753.1
IL_8CMJ_0801/AA/1711:1717,
1/AA/1727:1733
No text annotation
Not in a motif group
homologous
IL_8C3A_079
IL_60192.2
IL_8CMJ_0811/AA/1883:1889,
1/AA/2346:2349
No text annotation
Not in a motif group
homologous
IL_8C3A_080
IL_49460.2
IL_8CMJ_0821/AA/1895:1897,
1/AA/2338:2340
Isolated tWW turn
Not in a motif group
geometric
IL_4WF9_063
IL_54997.7
IL_8CMJ_0831/AA/1897:1901,
1/AA/2336:2338
Major groove platform with extra pair
Not in a motif group
geometric
IL_7RQB_093
IL_63450.2
IL_8CMJ_0841/AA/1901:1906,
1/AA/2333:2336
Intercalated tWH
Not in a motif group
geometric
IL_5TBW_077
IL_82842.2
IL_8CMJ_0851/AA/1918:1923,
1/AA/1928:1934
No text annotation
Not in a motif group
homologous
IL_8C3A_084
IL_65969.2
IL_8CMJ_0861/AA/1940:1942,
1/AA/2106:2108
No text annotation
Not in a motif group
homologous
IL_8C3A_085
IL_95997.1
IL_8CMJ_0871/AA/1947:1948,
1/AA/2098:2101
No text annotation
Not in a motif group
homologous
IL_8C3A_086
IL_74125.1
IL_8CMJ_0881/AA/2128:2129,
1/AA/2323:2325
No text annotation
Not in a motif group
homologous
IL_8C3A_087
IL_37497.2
IL_8CMJ_0891/AA/2156:2161,
1/AA/2173:2180
No text annotation
Not in a motif group
homologous
IL_8C3A_088
IL_64509.1
IL_8CMJ_0901/AA/2196:2199,
1/AA/2245:2246
No text annotation
Not in a motif group
homologous
IL_8C3A_089
IL_88739.1
IL_8CMJ_0911/AA/2200:2201,
1/AA/2241:2244
Stack outside cWW
Not in a motif group
geometric
IL_6JQ6_004
IL_16396.2
IL_8CMJ_0921/AA/2204:2206,
1/AA/2237:2238
No text annotation
Not in a motif group
homologous
IL_8C3A_091
IL_76488.2
IL_8CMJ_0931/AA/2206:2210,
1/AA/2235:2237
Minor groove platform with extra cWW
Not in a motif group
geometric
IL_4WF9_003
IL_65006.1
IL_8CMJ_0941/AA/2211:2217,
1/AA/2228:2234
No text annotation
Not in a motif group
homologous
IL_8C3A_093
IL_36973.6
IL_8CMJ_0951/AA/2276:2277,
1/AA/2307:2310
Multiple bulged bases
Not in a motif group
geometric
IL_5TBW_089
IL_59677.2
IL_8CMJ_0961/AA/2277:2289,
1/AA/2303:2307
No text annotation
Not in a motif group
IL_8CMJ_0971/AA/2391:2394,
1/AA/2986:2988
No text annotation
Not in a motif group
homologous
IL_8C3A_096
IL_63450.2
IL_8CMJ_0981/AA/2396:2398,
1/AA/2981:2984
No text annotation
Not in a motif group
homologous
IL_8C3A_097
IL_54678.5
IL_8CMJ_0991/AA/2409:2411,
1/AA/2811:2812
No text annotation
Not in a motif group
homologous
IL_8C3A_098
IL_83039.13
IL_8CMJ_1001/AA/2412:2413,
1/AA/2807:2810
No text annotation
Not in a motif group
homologous
IL_8C3A_099
IL_42622.2
IL_8CMJ_1011/AA/2420:2422,
1/AA/2608:2610
No text annotation
Not in a motif group
geometric
IL_4WF9_042
IL_95997.1
IL_8CMJ_1021/AA/2423:2425,
1/AA/2604:2607
No text annotation
Not in a motif group
homologous
IL_8C3A_100
IL_38958.7
IL_8CMJ_1031/AA/2444:2445,
1/AA/2501:2503
Major groove platform
Not in a motif group
geometric
IL_1S03_004
IL_27635.1
IL_8CMJ_1041/AA/2445:2450,
1/AA/2497:2501
No text annotation
Not in a motif group
IL_8CMJ_1051/AA/2520:2526,
1/AA/2584:2587
No text annotation
Not in a motif group
IL_8CMJ_1061/AA/2614:2615,
1/AA/2625:2627
No text annotation
Not in a motif group
homologous
IL_8C3A_107
IL_69996.1
IL_8CMJ_1071/AA/2666:2668,
1/AA/2686:2690
Isolated tHS basepair with bulges
Not in a motif group
geometric
IL_5TBW_099
IL_38958.7
IL_8CMJ_1081/AA/2714:2716,
1/AA/2740:2741
Single bulged A
Not in a motif group
geometric
IL_5WWT_001
IL_37497.2
IL_8CMJ_1091/AA/2718:2721,
1/AA/2735:2738
No text annotation
Not in a motif group
homologous
IL_8C3A_109
IL_30621.2
IL_8CMJ_1101/AA/2766:2768,
1/AA/2790:2792
No text annotation
Not in a motif group
geometric
IL_1L9A_003
IL_51629.2
IL_8CMJ_1111/AA/2770:2773,
1/AA/2787:2788
No text annotation
Not in a motif group
homologous
IL_8C3A_110
IL_76488.2
IL_8CMJ_1121/AA/2823:2824,
1/AA/2865:2867
Major groove platform
Not in a motif group
geometric
IL_5J7L_028
IL_27635.1
IL_8CMJ_1131/AA/2824:2826,
1/AA/2863:2865
No text annotation
Not in a motif group
geometric
IL_7RQB_017
IL_95997.1
IL_8CMJ_1141/AA/2826:2828,
1/AA/2862:2863
Major groove platform
Not in a motif group
geometric
IL_5TBW_104
IL_76223.2
IL_8CMJ_1151/AA/2828:2831,
1/AA/2857:2862
No text annotation
Not in a motif group
IL_8CMJ_1161/AA/2835:2839,
1/AA/2849:2853
No text annotation
Not in a motif group
homologous
IL_8C3A_114
NA
IL_8CMJ_1171/AA/2876:2877,
1/AA/2949:2951
Major groove platform
Not in a motif group
geometric
IL_4V9F_086
IL_76223.2
IL_8CMJ_1181/AA/2877:2879,
1/AA/2947:2949
No text annotation
Not in a motif group
geometric
IL_4YHW_001
IL_95997.1
IL_8CMJ_1191/AA/2879:2881,
1/AA/2943:2947
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5J7L_340
IL_90933.2
IL_8CMJ_1201/AA/2881:2882,
1/AA/2940:2943
Multiple bulged bases
Not in a motif group
geometric
IL_5TBW_109
IL_71530.2
IL_8CMJ_1211/AA/2889:2891,
1/AA/2912:2914
No text annotation
Not in a motif group
geometric
IL_4WF9_042
IL_95997.1
IL_8CMJ_1221/AA/2891:2892,
1/AA/2909:2912
No text annotation
Not in a motif group
homologous
IL_8C3A_119
IL_95601.3
IL_8CMJ_1231/AA/2918:2920,
1/AA/2926:2928
No text annotation
Not in a motif group
geometric
IL_5TBW_112
IL_95997.1
IL_8CMJ_1241/AA/2958:2960,
1/AA/2972:2974
No text annotation
Not in a motif group
homologous
IL_8C3A_121
IL_95997.1
IL_8CMJ_1251/AA/2960:2961,
1/AA/2970:2972
Single bulged A
Not in a motif group
geometric
IL_7RQB_101
IL_37497.2
IL_8CMJ_1261/AA/3004:3007,
1/AA/3139:3144
No text annotation
Not in a motif group
homologous
IL_8C3A_123
IL_09705.9
IL_8CMJ_1271/AA/3012:3014,
1/AA/3040:3042
No text annotation
Not in a motif group
homologous
IL_8C3A_124
IL_95997.1
IL_8CMJ_1281/AA/3018:3025,
1/AA/3030:3036
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_5TBW_116
IL_04346.7
IL_8CMJ_1291/AA/3047:3051,
1/AA/3091:3094
No text annotation
Not in a motif group
homologous
IL_8C3A_126
IL_37712.2
IL_8CMJ_1301/AA/3054:3059,
1/AA/3084:3088
No text annotation
Not in a motif group
homologous
IL_8C3A_127
IL_17136.1
IL_8CMJ_1311/AA/3063:3064,
1/AA/3077:3080
No text annotation
Not in a motif group
homologous
IL_8C3A_128
IL_71530.2
IL_8CMJ_1321/AA/3103:3107,
1/AA/3127:3131
No text annotation
Not in a motif group
homologous
IL_8C3A_129
IL_89002.2
IL_8CMJ_1331/AA/3164:3166,
1/AA/3284:3286
No text annotation
Not in a motif group
homologous
IL_8C3A_130
IL_95997.1
IL_8CMJ_1341/AA/3168:3170,
1/AA/3280:3282
No text annotation
Not in a motif group
geometric
IL_3U4M_001
IL_95997.1
IL_8CMJ_1351/AA/3177:3179,
1/AA/3210:3211
Single bulged A
Not in a motif group
geometric
IL_5TBW_123
IL_37497.2
IL_8CMJ_1361/AA/3179:3188,
1/AA/3204:3210
No text annotation
Not in a motif group
geometric
IL_5TBW_124
IL_15174.1
IL_8CMJ_1371/AA/3193:3194,
1/AA/3197:3199
Single bulged U
Not in a motif group
geometric
IL_5TBW_125
IL_83039.13
IL_8CMJ_1381/AA/3221:3223,
1/AA/3262:3264
Isolated cWS basepair
Not in a motif group
geometric
IL_5TBW_047
IL_52767.2
IL_8CMJ_1391/AA/3225:3229,
1/AA/3258:3260
No text annotation
Not in a motif group
geometric
IL_5TBW_126
IL_19389.6
IL_8CMJ_1401/AA/3233:3235,
1/AA/3252:3254
No text annotation
Not in a motif group
geometric
IL_5TBW_127
IL_95997.1
IL_8CMJ_1411/AA/3235:3238,
1/AA/3249:3252
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4UYK_003
IL_30621.2
IL_8CMJ_1421/AA/3300:3303,
1/AA/3311:3314
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5TBW_129
IL_30621.2
IL_8CMJ_1431/AA/3318:3320,
1/AA/3387:3388
Single bulged U
Not in a motif group
geometric
IL_7RQB_008
IL_83039.13
IL_8CMJ_1441/AA/3324:3325,
1/AA/3381:3383
No text annotation
Not in a motif group
homologous
IL_8C3A_137
IL_83039.13
IL_8CMJ_1451/AA/3328:3330,
1/AA/3373:3378
No text annotation
Not in a motif group
homologous
IL_8C3A_138
IL_90933.2
IL_8CMJ_1461/AA/3332:3337,
1/AA/3367:3371
No text annotation
Not in a motif group
homologous
IL_8C3A_139
IL_83162.5
IL_8CMJ_1471/AA/3340:3342,
1/AA/3363:3364
No text annotation
Not in a motif group
homologous
IL_8C3A_140
IL_83039.13
IL_8CMJ_1481/AA/3342:3345,
1/AA/3360:3363
tWS-tSW
Not in a motif group
geometric
IL_5TBW_135
IL_09705.9
IL_8CMJ_1491/AA/3347:3350,
1/AA/3356:3358
No text annotation
Not in a motif group
IL_8CMJ_1501/BB/15:16,
1/BB/63:65
Single bulged A
Not in a motif group
homologous
IL_5TBW_372
IL_37497.2
IL_8CMJ_1511/BB/21:28,
1/BB/52:58
No text annotation
Not in a motif group
IL_8CMJ_1521/BB/28:29,
1/BB/49:52
Minor groove platform
Not in a motif group
geometric
IL_5TBW_374
IL_63797.2
IL_8CMJ_1531/BB/29:30,
1/BB/47:49
Single stack bend
Not in a motif group
homologous
IL_5TBW_375
IL_76488.2
IL_8CMJ_1541/BB/32:36,
1/BB/41:45
Symmetric double minor groove platform
Not in a motif group
geometric
IL_5TBW_376
IL_58103.6
IL_8CMJ_1551/BB/72:80,
1/BB/100:106
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5TBW_377
IL_04346.7
IL_8CMJ_1561/BB/84:87,
1/BB/94:96
No text annotation
Not in a motif group
homologous
IL_5TBW_378
IL_95997.1
IL_8CMJ_1571/CC/44:64,
1/CC/96:100
No text annotation
Not in a motif group
geometric
IL_5TBW_144
IL_44998.1
IL_8CMJ_1581/CC/64:66,
1/CC/93:96
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5TBW_145
IL_82068.2
IL_8CMJ_1591/CC/68:69,
1/CC/89:91
Single bulged U
Not in a motif group
geometric
IL_5TBW_146
IL_83039.13
IL_8CMJ_1601/c/24:26,
1/c/600:601
Single bulged C
Not in a motif group
homologous
IL_4V88_384
IL_61258.12
IL_8CMJ_1611/c/27:29,
1/c/597:599
UU cWW
Not in a motif group
geometric
IL_3SZX_003
IL_95997.1
IL_8CMJ_1621/c/35:37,
1/c/471:473
UC cWW
Not in a motif group
homologous
IL_4V88_385
IL_51629.2
IL_8CMJ_1631/c/37:41,
1/c/466:471
No text annotation
Not in a motif group
geometric
IL_4V88_386
IL_41507.1
IL_8CMJ_1641/c/42:48,
1/c/431:433
No text annotation
Not in a motif group
homologous
IL_4V88_387
IL_33912.1
IL_8CMJ_1651/c/50:52,
1/c/428:429
Minor groove platform
Not in a motif group
homologous
IL_4V88_388
IL_93353.1
IL_8CMJ_1661/c/58:63,
1/c/87:89
No text annotation
Not in a motif group
homologous
IL_4V88_389
IL_95004.1
IL_8CMJ_1671/c/64:69,
1/c/82:86
No text annotation
Not in a motif group
homologous
IL_4V88_390
IL_77691.1
IL_8CMJ_1681/c/109:112,
1/c/302:305
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_391
IL_30621.2
IL_8CMJ_1691/c/113:116,
1/c/300:301
Single bulged A
Not in a motif group
geometric
IL_4WF9_098
IL_69996.1
IL_8CMJ_1701/c/117:122,
1/c/295:299
No text annotation
Not in a motif group
homologous
IL_4V88_393
IL_64181.2
IL_8CMJ_1711/c/142:149,
1/c/165:172
No text annotation
Not in a motif group
IL_8CMJ_1721/c/149:154,
1/c/160:165
No text annotation
Not in a motif group
IL_8CMJ_1731/c/204:206,
1/c/259:263
Major groove platform with extra cWW
Not in a motif group
geometric
IL_4V88_397
IL_05564.2
IL_8CMJ_1741/c/206:208,
1/c/257:259
No text annotation
Not in a motif group
geometric
IL_3GM7_006
IL_95997.1
IL_8CMJ_1761/c/211:243,
1/c/250:254
No text annotation
Not in a motif group
IL_8CMJ_1771/c/270:274,
1/c/282:285
No text annotation
Not in a motif group
IL_8CMJ_1781/c/311:316,
1/c/348:355
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4V88_402
IL_45067.2
IL_8CMJ_1791/c/318:323,
1/c/345:346
No text annotation
Not in a motif group
geometric
IL_4ERD_001
IL_59677.2
IL_8CMJ_1801/c/363:365,
1/c/376:381
No text annotation
Not in a motif group
homologous
IL_4V88_404
IL_11347.1
IL_8CMJ_1811/c/389:391,
1/c/406:408
Isolated cWH basepair
Not in a motif group
homologous
IL_4V88_405
IL_51629.2
IL_8CMJ_1821/c/439:441,
1/c/463:464
Single bulged U
Not in a motif group
homologous
IL_4V88_407
IL_83039.13
IL_8CMJ_1831/c/443:447,
1/c/460:461
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_8CMJ_1841/c/447:448,
1/c/458:460
No text annotation
Not in a motif group
homologous
IL_8C3A_417
IL_00225.2
IL_8CMJ_1851/c/479:481,
1/c/507:509
No text annotation
Not in a motif group
IL_8CMJ_1861/c/481:484,
1/c/503:507
No text annotation
Not in a motif group
IL_8CMJ_1871/c/514:516,
1/c/536:543
No text annotation
Not in a motif group
homologous
IL_8C3A_420
IL_55023.1
IL_8CMJ_1881/c/516:518,
1/c/533:536
Minor groove platform with extra cWW
Not in a motif group
geometric
IL_4V88_411
IL_46796.1
IL_8CMJ_1891/c/550:557,
1/c/587:588
SSU/LSU pseudoknot
Not in a motif group
geometric
IL_4V88_413
IL_15861.7
IL_8CMJ_1901/c/557:559,
1/c/586:587
Single bulged U
Not in a motif group
homologous
IL_4V88_414
IL_83039.13
IL_8CMJ_1911/c/561:568,
1/c/575:584
No text annotation
Not in a motif group
IL_8CMJ_1921/c/616:622,
1/c/1104:1105
No text annotation
Not in a motif group
homologous
IL_4V88_416
IL_69996.1
IL_8CMJ_1931/c/624:626,
1/c/973:975
No text annotation
Not in a motif group
homologous
IL_4V88_417
IL_95997.1
IL_8CMJ_1941/c/627:631,
1/c/968:972
tSH-tHW-tHS
Not in a motif group
homologous
IL_4V88_418