Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8EYQ_0011/A/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_8EYQ_0021/A/82:87No text annotation
Not in a motif group
HL_8EYQ_0031/A/158:163GNRA
Not in a motif group
homologous
HL_5J7L_003
HL_42097.1
HL_8EYQ_0041/A/186:191GNRA
Not in a motif group
homologous
HL_5J7L_004
HL_42097.1
HL_8EYQ_0051/A/207:212UNCG
Not in a motif group
homologous
HL_5J7L_005
HL_03562.2
HL_8EYQ_0061/A/259:267No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_69023.2
HL_8EYQ_0071/A/296:301GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_42097.1
HL_8EYQ_0081/A/320:333No text annotation
Not in a motif group
homologous
HL_5J7L_008
HL_81205.2
HL_8EYQ_0091/A/342:347UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_8EYQ_0101/A/379:384GNRA
Not in a motif group
homologous
HL_5J7L_010
HL_42097.1
HL_8EYQ_0111/A/419:424UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_8EYQ_0121/A/462:470No text annotation
Not in a motif group
homologous
HL_5J7L_012
HL_84085.2
HL_8EYQ_0131/A/522:527No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_75407.1
HL_8EYQ_0141/A/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.1
HL_8EYQ_0151/A/689:698No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_8EYQ_0161/A/726:731Other HL
Not in a motif group
homologous
HL_4LFB_016
HL_87030.2
HL_8EYQ_0171/A/786:796No text annotation
Not in a motif group
HL_8EYQ_0181/A/840:846No text annotation
Not in a motif group
HL_8EYQ_0191/A/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.1
HL_8EYQ_0201/A/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_8EYQ_0211/A/963:972No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_8EYQ_0221/A/1011:1018No text annotation
Not in a motif group
homologous
HL_6CZR_093
NA
HL_8EYQ_0231/A/1027:1034No text annotation
Not in a motif group
geometric
HL_5H9F_001
HL_24068.2
HL_8EYQ_0241/A/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_42097.1
HL_8EYQ_0251/A/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_8EYQ_0261/A/1134:1140No text annotation
Not in a motif group
homologous
HL_6CZR_097
NA
HL_8EYQ_0271/A/1165:1171No text annotation
Not in a motif group
homologous
HL_5J7L_026
HL_90617.2
HL_8EYQ_0281/A/1265:1270GNRA
Not in a motif group
homologous
HL_5J7L_027
HL_42097.1
HL_8EYQ_0291/A/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_8EYQ_0301/A/1356:1366No text annotation
Not in a motif group
homologous
HL_5J7L_029
HL_96366.1
HL_8EYQ_0311/A/1449:1454UNCG
Not in a motif group
homologous
HL_5J7L_030
HL_03562.2
HL_8EYQ_0321/A/1515:1520Other HL
Not in a motif group
geometric
HL_5TBW_048
HL_42097.1

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8EYQ_0011/A/30:32,
1/A/552:553
Single bulged G
Not in a motif group
homologous
IL_5J7L_001
IL_00225.2
IL_8EYQ_0021/A/44:45,
1/A/396:398
Single bulged A
Not in a motif group
homologous
IL_5J7L_002
IL_37497.2
IL_8EYQ_0031/A/47:52,
1/A/359:361
No text annotation
Not in a motif group
homologous
IL_5J7L_003
IL_11178.1
IL_8EYQ_0041/A/54:56,
1/A/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_93353.1
IL_8EYQ_0051/A/63:66,
1/A/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_005
IL_76389.1
IL_8EYQ_0061/A/67:69,
1/A/99:102
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_65006.1
IL_8EYQ_0071/A/70:73,
1/A/97:98
Minor groove platform
Not in a motif group
homologous
IL_5J7L_007
IL_15052.1
IL_8EYQ_0081/A/75:76,
1/A/93:95
Single bulged G
Not in a motif group
geometric
IL_5DEA_002
IL_00225.2
IL_8EYQ_0101/A/128:131,
1/A/231:233
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_009
IL_82068.2
IL_8EYQ_0111/A/132:136,
1/A/227:230
No text annotation
Not in a motif group
homologous
IL_4LFB_008
IL_58764.3
IL_8EYQ_0121/A/144:146,
1/A/176:178
Isolated cWH basepair
Not in a motif group
homologous
IL_5J7L_011
IL_51629.2
IL_8EYQ_0131/A/147:153,
1/A/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_8EYQ_0141/A/203:206,
1/A/213:214
Minor groove platform
Not in a motif group
geometric
IL_3IWN_005
IL_15052.1
IL_8EYQ_0151/A/242:247,
1/A/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4LFB_011
IL_45067.2
IL_8EYQ_0161/A/249:252,
1/A/274:275
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_48100.2
IL_8EYQ_0171/A/292:293,
1/A/304:308
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_8EYQ_0181/A/367:369,
1/A/392:393
Single bulged U
Not in a motif group
homologous
IL_5J7L_017
IL_83039.13
IL_8EYQ_0191/A/371:375,
1/A/389:390
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_8EYQ_0201/A/375:376,
1/A/387:389
Single bulged G
Not in a motif group
homologous
IL_5J7L_019
IL_00225.2
IL_8EYQ_0211/A/409:416,
1/A/427:433
No text annotation
Not in a motif group
homologous
IL_5J7L_020
IL_28026.1
IL_8EYQ_0221/A/440:442,
1/A/492:497
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_22248.1
IL_8EYQ_0231/A/446:450,
1/A/483:488
tSH-tHW-tWW
Not in a motif group
homologous
IL_5J7L_022
IL_88269.3
IL_8EYQ_0241/A/450:455,
1/A/477:483
No text annotation
Not in a motif group
geometric
IL_5J7L_023
IL_70801.1
IL_8EYQ_0251/A/504:511,
1/A/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4LFB_020
IL_15861.7
IL_8EYQ_0261/A/515:521,
1/A/528:536
No text annotation
Not in a motif group
homologous
IL_5J7L_025
NA
IL_8EYQ_0271/A/569:575,
1/A/880:881
No text annotation
Not in a motif group
homologous
IL_6CZR_134
IL_69996.1
IL_8EYQ_0281/A/580:584,
1/A/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_027
IL_17136.1
IL_8EYQ_0291/A/594:596,
1/A/644:645
Major groove platform
Not in a motif group
homologous
IL_5J7L_028
IL_27635.1
IL_8EYQ_0301/A/597:598,
1/A/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4LFB_025
IL_09061.6
IL_8EYQ_0311/A/605:612,
1/A/628:633
No text annotation
Not in a motif group
homologous
IL_5J7L_030
IL_78349.1
IL_8EYQ_0321/A/654:655,
1/A/751:754
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_5J7L_031
IL_50694.2
IL_8EYQ_0331/A/659:660,
1/A/745:747
Single stack bend
Not in a motif group
homologous
IL_5J7L_032
IL_76488.2
IL_8EYQ_0341/A/662:666,
1/A/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_71110.1
IL_8EYQ_0351/A/684:688,
1/A/699:706
Kink-turn
Not in a motif group
homologous
IL_5J7L_035
IL_45067.2
IL_8EYQ_0361/A/774:778,
1/A/804:805
Left turn
Not in a motif group
homologous
IL_5J7L_036
IL_29346.1
IL_8EYQ_0371/A/779:783,
1/A/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_037
IL_17136.1
IL_8EYQ_0381/A/887:894,
1/A/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_5J7L_038
IL_24606.2
IL_8EYQ_0391/A/933:935,
1/A/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_4LFB_037
IL_47078.1
IL_8EYQ_0401/A/953:954,
1/A/1226:1228
Minor groove platform
Not in a motif group
homologous
IL_4LFB_038
IL_42622.2
IL_8EYQ_0411/A/993:997,
1/A/1044:1045
Minor groove platform
Not in a motif group
homologous
IL_4LFB_039
IL_47078.1
IL_8EYQ_0421/A/998:999,
1/A/1041:1043
Single stack bend
Not in a motif group
homologous
IL_5J7L_044
IL_76488.2
IL_8EYQ_0431/A/1006:1011,
1/A/1018:1023
No text annotation
Not in a motif group
IL_8EYQ_0441/A/1048:1050,
1/A/1208:1209
Single bulged U
Not in a motif group
homologous
IL_5J7L_046
IL_83039.13
IL_8EYQ_0451/A/1050:1056,
1/A/1204:1208
No text annotation
Not in a motif group
IL_8EYQ_0461/A/1057:1058,
1/A/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_93353.1
IL_8EYQ_0471/A/1060:1061,
1/A/1195:1197
Single bulged A
Not in a motif group
geometric
IL_5J7L_049
IL_37497.2
IL_8EYQ_0481/A/1061:1063,
1/A/1193:1195
No text annotation
Not in a motif group
homologous
IL_5J7L_050
IL_95997.1
IL_8EYQ_0491/A/1124:1128,
1/A/1144:1149
No text annotation
Not in a motif group
homologous
IL_5J7L_051
IL_93211.1
IL_8EYQ_0501/A/1129:1132,
1/A/1142:1143
Minor groove platform
Not in a motif group
homologous
IL_5J7L_052
IL_15052.1
IL_8EYQ_0511/A/1158:1161,
1/A/1175:1181
No text annotation
Not in a motif group
homologous
IL_5J7L_053
IL_42032.1
IL_8EYQ_0521/A/1247:1253,
1/A/1284:1290
No text annotation
Not in a motif group
homologous
IL_5J7L_054
IL_09129.1
IL_8EYQ_0531/A/1255:1258,
1/A/1277:1282
No text annotation
Not in a motif group
homologous
IL_5J7L_055
IL_75461.4
IL_8EYQ_0541/A/1259:1263,
1/A/1272:1276
Triple sheared
Not in a motif group
homologous
IL_5J7L_056
IL_56467.8
IL_8EYQ_0551/A/1303:1308,
1/A/1329:1334
No text annotation
Not in a motif group
homologous
IL_5J7L_057
IL_19954.2
IL_8EYQ_0571/A/1412:1415,
1/A/1485:1488
No text annotation
Not in a motif group
IL_8EYQ_0581/A/1416:1419,
1/A/1481:1484
Double sheared
Not in a motif group
homologous
IL_4LFB_060
IL_09705.9
IL_8EYQ_0591/A/1420:1422,
1/A/1478:1480
No text annotation
Not in a motif group
IL_8EYQ_0601/A/1425:1427,
1/A/1473:1475
UG cWW
Not in a motif group
homologous
IL_4LFB_061
IL_95997.1
IL_8EYQ_0611/A/1430:1435,
1/A/1466:1470
Triple sheared related
Not in a motif group
homologous
IL_5J7L_063
IL_64879.2
IL_8EYQ_0621/A/1440:1442,
1/A/1460:1461
Minor groove platform
Not in a motif group
homologous
IL_5J7L_064
IL_42622.2
IL_8EYQ_0631/A/1445:1448,
1/A/1455:1457
No text annotation
Not in a motif group
homologous
IL_5J7L_065
IL_02284.5

Problematic loops

#loop idProblemSequence
IL_8EYQ_009No text annotation
IL_8EYQ_056No text annotation
IL_8EYQ_064Isolated cWH basepair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8EYQ_0011/A/826:829,
1/A/857:861,
1/A/868:874
No text annotation
Not in a motif group
homologous
J3_5J7L_004
NA
J3_8EYQ_0021/A/943:946,
1/A/1235:1237,
1/A/1337:1340
No text annotation
Not in a motif group
homologous
J3_4LFB_003
NA
J3_8EYQ_0031/A/955:962,
1/A/973:984,
1/A/1221:1225
No text annotation
Not in a motif group
J3_8EYQ_0041/A/990:993,
1/A/1045:1047,
1/A/1210:1215
No text annotation
Not in a motif group
J3_8EYQ_0051/A/1003:1006,
1/A/1023:1027,
1/A/1034:1037
No text annotation
Not in a motif group
J3_8EYQ_0061/A/1063:1068,
1/A/1107:1113,
1/A/1187:1193
No text annotation
Not in a motif group
J3_8EYQ_0071/A/1116:1118,
1/A/1155:1158,
1/A/1181:1184
No text annotation
Not in a motif group
J3_8EYQ_0081/A/1237:1241,
1/A/1296:1303,
1/A/1334:1337
No text annotation
Not in a motif group

Problematic loops

No problematic loops


Coloring options:
Copyright 2024 BGSU RNA group. Page generated in 0.1010 s