| Column number: Node in JAR3D model: Insertion positions indicated by I: Position in motif group: | 1 1 I | 2 2 1 | 3 2 I | 4 3 2 | 5 2 I | 6 2 3 | 7 1 I | In acceptance region | Cutoff score | Full edit distance | Interior edit distance | Alignment score deficit |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HL_68529.1_Instance_1 HL_68529.1_HL_4OOG_002_G14_C19 | G | AG | U | C | C | |||||||
| HL_68529.1_Sequence_1 HL_68529.1_HL_4OOG_002_G14_C19 | G | AG | U | C | C | true | 100 | 0 | 0 | 0.00 | ||
| HL_68529.1_Instance_2 HL_68529.1_HL_4OOG_001_G14_C19 | G | AG | U | C | C | |||||||
| HL_68529.1_Sequence_2 HL_68529.1_HL_4OOG_001_G14_C19 | G | AG | U | C | C | true | 100 | 0 | 0 | 0.00 | ||
| HL_68529.1_Instance_3 HL_68529.1_HL_5T16_002_G16_C21 | G | AG | U | C | C | |||||||
| HL_68529.1_Sequence_3 HL_68529.1_HL_5T16_002_G16_C21 | G | AG | U | C | C | true | 100 | 0 | 0 | 0.00 | ||
| HL_68529.1_Instance_4 HL_68529.1_HL_4KR9_001_G10_C15 | G | UG | U | C | C | |||||||
| HL_68529.1_Sequence_4 HL_68529.1_HL_4KR9_001_G10_C15 | G | UG | U | C | C | true | 91 | 0 | 0 | 0.85 |
1 2 s35 1 3 cWW 2 3 s55JAR3D SCFG/MRF model for HL_68529.1:
Character Definition | A,C,G,U,* // Define characters here InitialNode | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [3] // Initial node G14 - C19 from junction BasepairNode | Deletion Probability [0.0000000000030849] | Pair Probability [[0.009546506,0.019881954,0.010870922,0.197449200,0.000000000],[0.016768697,0.009361308,0.199122279,0.013028540,0.000000000],[0.010750195,0.243371713,0.002049102,0.026250458,0.000000000],[0.194922229,0.013522366,0.023009709,0.010094826,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.000000000,0.012187690,0.975015235,0.012187690,0.000609385] | Left Letter Distribution [0.350000000,0.050000000,0.450000000,0.150000000,0.000000000] | Right Length Distribution [0.012187690,0.975015235,0.012187690,0.000609385] | Right Letter Distribution [0.083333333,0.750000000,0.083333333,0.083333333,0.000000000] | Left Index [1] | Right Index [3] // Basepair G14 - C19 cWW HairpinNode | Num Bases [1] | Left Index [2] | Right Index [2] | Norm Constant [1.000000000000000] // Hairpin node U17:U17 Interaction | Interacting Bases [1,1] | Pair Probability [[0.083333333,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.083333333,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.083333333,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.750000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U17Sequences of instances from HL_68529.1:
> HL_68529.1 HL_4OOG_002 G 14 C 19 GAGUCC > HL_68529.1 HL_4OOG_001 G 14 C 19 GAGUCC > HL_68529.1 HL_5T16_002 G 16 C 21 GAGUCC > HL_68529.1 HL_4KR9_001 G 10 C 15 GUGUCC