| Column number: Node in JAR3D model: Insertion positions indicated by I: Position in motif group: | 1 1 I | 2 2 1 | 3 2 I | 4 3 2 | 5 3 I | 6 4 3 | 7 3 I | 8 3 4 | 9 2 I | 10 2 5 | 11 1 I | In acceptance region | Cutoff score | Full edit distance | Interior edit distance | Alignment score deficit |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HL_37407.1_Instance_1 HL_37407.1_HL_4V9F_019_G670_C676 | G | A | G | U | A | U | C | |||||||||
| HL_37407.1_Sequence_1 HL_37407.1_HL_4V9F_019_G670_C676 | G | A | G | U | A | U | C | true | 100 | 0 | 0 | 0.00 | ||||
| HL_37407.1_Instance_2 HL_37407.1_HL_6CZR_076_G207_C213 | G | C | U | U | U | G | C | |||||||||
| HL_37407.1_Sequence_2 HL_37407.1_HL_6CZR_076_G207_C213 | G | C | U | U | U | G | C | true | 89 | 0 | 0 | 1.33 |
1 2 s35 1 5 cWW 2 3 s35 2 4 tSH 4 5 s35JAR3D SCFG/MRF model for HL_37407.1:
Character Definition | A,C,G,U,* // Define characters here InitialNode | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [5] // Initial node G670 - C676 from junction BasepairNode | Deletion Probability [0.0000229437914523] | Pair Probability [[0.009733692,0.020271796,0.011084078,0.201320753,0.000000000],[0.017097495,0.009544863,0.203026637,0.013284001,0.000000000],[0.010960983,0.228535864,0.002089280,0.026765173,0.000000000],[0.198744233,0.013787510,0.023460879,0.010292763,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.991950402,0.007999600,0.000049998] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.991950402,0.007999600,0.000049998] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [5] // Basepair G670 - C676 cWW BasepairNode | Deletion Probability [0.0000000006094467] | Pair Probability [[0.023021455,0.015676229,0.003775280,0.387331964,0.000000000],[0.018776188,0.015711894,0.102705762,0.003775280,0.000000000],[0.017792908,0.003775280,0.340741106,0.022912277,0.000000000],[0.018571381,0.017882434,0.003775280,0.003775280,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.023781213,0.951248514,0.023781213,0.001189061] | Left Letter Distribution [0.125000000,0.125000000,0.375000000,0.375000000,0.000000000] | Right Length Distribution [0.023781213,0.951248514,0.023781213,0.001189061] | Right Letter Distribution [0.375000000,0.125000000,0.125000000,0.375000000,0.000000000] | Left Index [2] | Right Index [4] // Basepair A671 - U675 tSH HairpinNode | Num Bases [1] | Left Index [3] | Right Index [3] | Norm Constant [1.000000000000000] // Hairpin node U673:U673 Interaction | Interacting Bases [1,1] | Pair Probability [[0.125000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.125000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.125000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.625000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U673Sequences of instances from HL_37407.1:
> HL_37407.1 HL_4V9F_019 G 670 C 676 GAGUAUC > HL_37407.1 HL_6CZR_076 G 207 C 213 GCUUUGC