Comparison of motif group and JAR3D alignment of sequences each motif group

HL_00317.1 had 0 misalignments
HL_00996.1 had 0 misalignments
HL_01008.4 had 0 misalignments
HL_01181.4 had 0 misalignments
HL_01187.1 had 0 misalignments
HL_01472.3 had 0 misalignments
HL_01925.1 had 1 misalignment
HL_02361.5 had 0 misalignments
HL_02483.1 had 0 misalignments
HL_02733.4 had 0 misalignments
HL_02811.1 had 0 misalignments
HL_02906.1 had 0 misalignments
HL_03427.1 had 0 misalignments
HL_03603.1 had 0 misalignments
HL_03847.1 had 0 misalignments
HL_04171.2 had 0 misalignments
HL_04891.1 had 0 misalignments
HL_05018.4 had 0 misalignments
HL_05123.1 had 0 misalignments
HL_05667.1 had 0 misalignments
HL_05692.1 had 0 misalignments
HL_05832.1 had 0 misalignments
HL_06048.1 had 0 misalignments
HL_06137.1 had 1 misalignment
HL_06569.1 had 0 misalignments
HL_06645.1 had 0 misalignments
HL_06920.1 had 0 misalignments
HL_07268.1 had 0 misalignments
HL_07432.1 had 0 misalignments
HL_07579.1 had 0 misalignments
HL_08002.5 had 0 misalignments
HL_08291.1 had 0 misalignments
HL_08510.1 had 0 misalignments
HL_08602.1 had 0 misalignments
HL_08748.1 had 0 misalignments
HL_09712.1 had 0 misalignments
HL_10536.1 had 0 misalignments
HL_10751.2 had 0 misalignments
HL_11805.2 had 0 misalignments
HL_12053.1 had 0 misalignments
HL_12571.1 had 0 misalignments
HL_12703.2 had 0 misalignments
HL_12710.1 had 0 misalignments
HL_12773.1 had 0 misalignments
HL_12870.1 had 0 misalignments
HL_14286.1 had 0 misalignments
HL_14725.1 had 0 misalignments
HL_14859.1 had 0 misalignments
HL_15942.4 had 0 misalignments
HL_15968.1 had 0 misalignments
HL_16845.5 had 0 misalignments
HL_16898.2 had 0 misalignments
HL_17086.2 had 0 misalignments
HL_17899.1 had 0 misalignments
HL_17926.4 had 0 misalignments
HL_17956.1 had 0 misalignments
HL_18218.2 had 0 misalignments
HL_18495.1 had 0 misalignments
HL_18722.1 had 0 misalignments
HL_18785.1 had 0 misalignments
HL_18808.1 had 0 misalignments
HL_19162.2 had 0 misalignments
HL_19239.1 had 0 misalignments
HL_19398.1 had 0 misalignments
HL_19870.4 had 0 misalignments
HL_19958.1 had 0 misalignments
HL_20714.1 had 0 misalignments
HL_20743.2 had 0 misalignments
HL_20751.1 had 0 misalignments
HL_20891.1 had 0 misalignments
HL_22443.1 had 0 misalignments
HL_22447.1 had 0 misalignments
HL_22515.1 had 0 misalignments
HL_22576.1 had 0 misalignments
HL_23090.1 had 0 misalignments
HL_23219.1 had 0 misalignments
HL_23481.4 had 0 misalignments
HL_23537.2 had 0 misalignments
HL_24323.1 had 0 misalignments
HL_24403.1 had 0 misalignments
HL_24625.1 had 0 misalignments
HL_25183.1 had 0 misalignments
HL_25466.1 had 0 misalignments
HL_25660.1 had 0 misalignments
HL_26055.5 had 0 misalignments
HL_26501.1 had 0 misalignments
HL_26772.1 had 0 misalignments
HL_27335.1 had 0 misalignments
HL_27359.1 had 0 misalignments
HL_27747.3 had 0 misalignments
HL_27757.1 had 0 misalignments
HL_28085.1 had 0 misalignments
HL_28567.3 had 0 misalignments
HL_28843.1 had 1 misalignment
HL_29487.1 had 0 misalignments
HL_30541.1 had 0 misalignments
HL_30585.1 had 0 misalignments
HL_30596.1 had 0 misalignments
HL_30819.1 had 0 misalignments
HL_30937.1 had 0 misalignments
HL_31286.3 had 0 misalignments
HL_31581.4 had 0 misalignments
HL_32255.1 had 0 misalignments
HL_32458.2 had 0 misalignments
HL_32512.6 had 0 misalignments
HL_32527.2 had 0 misalignments
HL_32617.1 had 0 misalignments
HL_33172.1 had 0 misalignments
HL_33239.14 had 0 misalignments
HL_33507.2 had 0 misalignments
HL_33612.1 had 0 misalignments
HL_34135.1 had 0 misalignments
HL_34974.1 had 0 misalignments
HL_35010.1 had 0 misalignments
HL_35188.1 had 0 misalignments
HL_35491.2 had 0 misalignments
HL_35888.1 had 0 misalignments
HL_35894.3 had 0 misalignments
HL_35978.6 had 1 misalignment
HL_36095.1 had 0 misalignments
HL_36207.1 had 0 misalignments
HL_36421.4 had 0 misalignments
HL_36552.1 had 0 misalignments
HL_36982.3 had 0 misalignments
HL_37407.1 had 0 misalignments
HL_37694.1 had 0 misalignments
HL_37846.1 had 0 misalignments
HL_38011.1 had 0 misalignments
HL_38513.1 had 0 misalignments
HL_38646.2 had 0 misalignments
HL_39334.4 had 0 misalignments
HL_40469.1 had 0 misalignments
HL_41207.1 had 0 misalignments
HL_41285.1 had 0 misalignments
HL_41778.1 had 0 misalignments
HL_41851.1 had 0 misalignments
HL_42211.1 had 0 misalignments
HL_42671.1 had 0 misalignments
HL_42733.3 had 0 misalignments
HL_43074.14 had 0 misalignments
HL_43488.1 had 0 misalignments
HL_43527.1 had 0 misalignments
HL_43610.4 had 0 misalignments
HL_43613.3 had 0 misalignments
HL_44730.2 had 0 misalignments
HL_44769.1 had 0 misalignments
HL_44781.1 had 0 misalignments
HL_44911.1 had 0 misalignments
HL_46142.7 had 0 misalignments
HL_46463.1 had 0 misalignments
HL_46465.1 had 6 misalignments
HL_46546.1 had 0 misalignments
HL_46771.1 had 0 misalignments
HL_46891.2 had 0 misalignments
HL_48376.3 had 0 misalignments
HL_48636.1 had 0 misalignments
HL_48810.1 had 0 misalignments
HL_48962.1 had 0 misalignments
HL_49194.1 had 0 misalignments
HL_49196.2 had 0 misalignments
HL_49213.1 had 0 misalignments
HL_49223.1 had 0 misalignments
HL_49816.1 had 0 misalignments
HL_49873.1 had 0 misalignments
HL_49992.1 had 0 misalignments
HL_50374.1 had 0 misalignments
HL_50537.2 had 0 misalignments
HL_50622.6 had 0 misalignments
HL_50959.1 had 0 misalignments
HL_51033.1 had 0 misalignments
HL_51090.1 had 0 misalignments
HL_51284.1 had 0 misalignments
HL_52240.1 had 0 misalignments
HL_52657.1 had 0 misalignments
HL_52853.1 had 0 misalignments
HL_53037.1 had 0 misalignments
HL_53189.1 had 0 misalignments
HL_53499.1 had 0 misalignments
HL_53760.2 had 0 misalignments
HL_53987.3 had 0 misalignments
HL_54035.5 had 0 misalignments
HL_55046.1 had 0 misalignments
HL_55511.1 had 0 misalignments
HL_56089.1 had 0 misalignments
HL_56387.1 had 0 misalignments
HL_56500.1 had 0 misalignments
HL_56677.4 had 0 misalignments
HL_57052.2 had 0 misalignments
HL_57204.1 had 0 misalignments
HL_58200.1 had 0 misalignments
HL_58446.1 had 0 misalignments
HL_58539.1 had 0 misalignments
HL_58733.1 had 0 misalignments
HL_58912.1 had 0 misalignments
HL_59297.1 had 0 misalignments
HL_59445.1 had 0 misalignments
HL_59564.1 had 0 misalignments
HL_59710.7 had 0 misalignments
HL_60140.1 had 0 misalignments
HL_60326.1 had 0 misalignments
HL_60357.1 had 0 misalignments
HL_60914.1 had 0 misalignments
HL_61092.1 had 0 misalignments
HL_61984.1 had 0 misalignments
HL_62604.1 had 0 misalignments
HL_62869.2 had 0 misalignments
HL_63285.1 had 0 misalignments
HL_63693.1 had 0 misalignments
HL_66171.2 had 0 misalignments
HL_66703.1 had 0 misalignments
HL_67044.1 had 0 misalignments
HL_67052.1 had 0 misalignments
HL_67205.1 had 0 misalignments
HL_67216.4 had 0 misalignments
HL_67265.4 had 0 misalignments
HL_68304.6 had 0 misalignments
HL_68478.1 had 0 misalignments
HL_68493.4 had 0 misalignments
HL_68529.1 had 0 misalignments
HL_68742.1 had 0 misalignments
HL_68863.1 had 0 misalignments
HL_69353.6 had 2 misalignments
HL_69459.1 had 0 misalignments
HL_69677.1 had 0 misalignments
HL_69774.3 had 0 misalignments
HL_69818.1 had 0 misalignments
HL_69941.1 had 0 misalignments
HL_70505.1 had 0 misalignments
HL_70682.1 had 0 misalignments
HL_70970.1 had 0 misalignments
HL_72066.1 had 0 misalignments
HL_72419.1 had 0 misalignments
HL_72451.4 had 0 misalignments
HL_72714.2 had 0 misalignments
HL_73051.1 had 0 misalignments
HL_73235.1 had 0 misalignments
HL_73266.3 had 0 misalignments
HL_73793.2 had 0 misalignments
HL_74088.1 had 1 misalignment
HL_75091.3 had 0 misalignments
HL_76360.1 had 0 misalignments
HL_76406.3 had 0 misalignments
HL_77081.1 had 0 misalignments
HL_78061.2 had 0 misalignments
HL_78457.3 had 0 misalignments
HL_78724.1 had 0 misalignments
HL_79272.2 had 0 misalignments
HL_79299.9 had 0 misalignments
HL_79564.1 had 1 misalignment
HL_80105.3 had 0 misalignments
HL_80171.1 had 0 misalignments
HL_80705.1 had 0 misalignments
HL_81205.2 had 0 misalignments
HL_81327.2 had 0 misalignments
HL_81820.1 had 0 misalignments
HL_82678.2 had 0 misalignments
HL_82782.1 had 0 misalignments
HL_82866.1 had 0 misalignments
HL_83225.1 had 0 misalignments
HL_83704.1 had 0 misalignments
HL_84050.1 had 0 misalignments
HL_85984.1 had 0 misalignments
HL_86109.1 had 0 misalignments
HL_86378.1 had 0 misalignments
HL_86769.2 had 0 misalignments
HL_86843.1 had 0 misalignments
HL_86880.4 had 0 misalignments
HL_87219.4 had 0 misalignments
HL_88225.1 had 0 misalignments
HL_88858.1 had 0 misalignments
HL_88982.1 had 0 misalignments
HL_89082.1 had 0 misalignments
HL_90197.1 had 0 misalignments
HL_90257.1 had 0 misalignments
HL_90620.1 had 0 misalignments
HL_90642.4 had 0 misalignments
HL_90961.1 had 0 misalignments
HL_91131.1 had 0 misalignments
HL_91503.2 had 0 misalignments
HL_92304.3 had 0 misalignments
HL_92488.1 had 0 misalignments
HL_92681.4 had 0 misalignments
HL_93221.1 had 0 misalignments
HL_93229.1 had 0 misalignments
HL_93436.1 had 0 misalignments
HL_93551.1 had 0 misalignments
HL_93573.1 had 0 misalignments
HL_93650.1 had 0 misalignments
HL_93727.3 had 0 misalignments
HL_94032.1 had 0 misalignments
HL_94352.4 had 0 misalignments
HL_94386.1 had 0 misalignments
HL_94607.1 had 0 misalignments
HL_94651.1 had 0 misalignments
HL_95237.1 had 0 misalignments
HL_96283.1 had 0 misalignments
HL_96423.1 had 0 misalignments
HL_96487.1 had 0 misalignments
HL_96776.2 had 0 misalignments
HL_96854.1 had 0 misalignments
HL_97049.1 had 0 misalignments
HL_97733.1 had 0 misalignments
HL_98248.1 had 0 misalignments
HL_98252.1 had 0 misalignments
HL_98557.4 had 0 misalignments
HL_98870.1 had 0 misalignments
HL_98885.3 had 0 misalignments
HL_98995.6 had 0 misalignments
HL_99223.1 had 0 misalignments
HL_99402.3 had 0 misalignments