| Column number: Node in JAR3D model: Insertion positions indicated by I: Position in motif group: | 1 1 I | 2 2 1 | 3 2 I | 4 3 2 | 5 3 I | 6 3 3 | 7 2 I | 8 2 4 | 9 1 I | In acceptance region | Cutoff score | Full edit distance | Interior edit distance | Alignment score deficit |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HL_18722.1_Instance_1 HL_18722.1_HL_4LFB_018_G838_C848 | G | U | C | U | C | |||||||||
| HL_18722.1_Sequence_1 HL_18722.1_HL_4LFB_018_G838_C848 | G | U | C | U | C | true | 100 | 0 | 0 | 0.00 | ||||
| HL_18722.1_Instance_2 HL_18722.1_HL_6CZR_089_G822_C826 | G | U | C | U | C | |||||||||
| HL_18722.1_Sequence_2 HL_18722.1_HL_6CZR_089_G822_C826 | G | U | C | U | C | true | 100 | 0 | 0 | 0.00 | ||||
| HL_18722.1_Instance_3 HL_18722.1_HL_6U8D_003_C232_G235 | C | G | U | G | ||||||||||
| HL_18722.1_Sequence_3 HL_18722.1_HL_6U8D_003_C232_G235 | C | G | U | G | true | 87 | 0 | 0 | 1.27 |
1 3 s35 1 4 cWWJAR3D SCFG/MRF model for HL_18722.1:
Character Definition | A,C,G,U,* // Define characters here InitialNode | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [4] // Initial node G838 - C848 from junction BasepairNode | Deletion Probability [0.0000006691671388] | Pair Probability [[0.009574124,0.019028436,0.010936653,0.198530575,0.000000000],[0.017980846,0.009507606,0.212727929,0.013322270,0.000000000],[0.010896029,0.224384255,0.002069153,0.025416337,0.000000000],[0.197680266,0.013488440,0.024325847,0.010131233,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.993970181,0.005999820,0.000029999] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.334863624,0.653524170,0.011072104,0.000540103] | Right Letter Distribution [0.125000000,0.125000000,0.125000000,0.625000000,0.000000000] | Left Index [1] | Right Index [4] // Basepair G838 - C848 cWW HairpinNode | Num Bases [2] | Left Index [2] | Right Index [3] | Norm Constant [1.000000000000000] // Hairpin node U839:C840 Interaction | Interacting Bases [1,1] | Pair Probability [[0.100000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.100000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.300000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.500000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U839 Interaction | Interacting Bases [2,2] | Pair Probability [[0.100000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.500000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.100000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.300000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C840Sequences of instances from HL_18722.1:
> HL_18722.1 HL_4LFB_018 G 838 C 848 GUCUC > HL_18722.1 HL_6CZR_089 G 822 C 826 GUCUC > HL_18722.1 HL_6U8D_003 C 232 G 235 CGUG