| Column number: Node in JAR3D model: Insertion positions indicated by I: Position in motif group: | 1 1 I | 2 2 1 | 3 2 I | 4 2 2 | 5 1 I | In acceptance region | Cutoff score | Full edit distance | Interior edit distance | Alignment score deficit |
|---|---|---|---|---|---|---|---|---|---|---|
| HL_69459.1_Instance_1 HL_69459.1_HL_2Y8W_001_C11_G16 | C | GCGU | G | |||||||
| HL_69459.1_Sequence_1 HL_69459.1_HL_2Y8W_001_C11_G16 | C | GCGU | G | true | 100 | 0 | 0 | 0.00 |
1 2 cWWJAR3D SCFG/MRF model for HL_69459.1:
Character Definition | A,C,G,U,* // Define characters here InitialNode | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [2] // Initial node C11 - G16 from junction HairpinNode | Num Bases [2] | Left Index [1] | Right Index [2] | Norm Constant [1.000000000000000] // Hairpin node C11:G16 Interaction | Interacting Bases [1,2] | Pair Probability [[0.009631000,0.017270697,0.011072020,0.200757565,0.000000000],[0.020477154,0.009808895,0.220945507,0.013927182,0.000000000],[0.011196362,0.205083350,0.002110445,0.023698544,0.000000000],[0.203360186,0.013418572,0.027036311,0.010206209,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin Interaction C11 - G16 cWW Insertion | Location [1] | Length Distribution [0.000000000,0.000000000,0.000000000,0.045351474,0.907029478,0.045351474,0.002267574] | Letter Distribution [0.083333333,0.250000000,0.416666667,0.250000000,0.000000000]// Insertion in Hairpin after nucleotide 1, position 1Sequences of instances from HL_69459.1:
> HL_69459.1 HL_2Y8W_001 C 11 G 16 CGCGUG