| Column number: Node in JAR3D model: Insertion positions indicated by I: Position in motif group: | 1 1 I | 2 2 1 | 3 2 I | 4 3 2 | 5 2 I | 6 2 3 | 7 1 I | In acceptance region | Cutoff score | Full edit distance | Interior edit distance | Alignment score deficit |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HL_36982.3_Instance_1 HL_36982.3_HL_4ZLD_001_C7_G11 | C | U | G | U | G | |||||||
| HL_36982.3_Sequence_1 HL_36982.3_HL_4ZLD_001_C7_G11 | C | U | G | U | G | true | 100 | 0 | 0 | 0.00 | ||
| HL_36982.3_Instance_2 HL_36982.3_HL_4Z31_001_C6_G10 | C | U | G | U | G | |||||||
| HL_36982.3_Sequence_2 HL_36982.3_HL_4Z31_001_C6_G10 | C | U | G | U | G | true | 100 | 0 | 0 | 0.00 | ||
| HL_36982.3_Instance_3 HL_36982.3_HL_4QIL_002_C8_G12 | C | U | G | U | G | |||||||
| HL_36982.3_Sequence_3 HL_36982.3_HL_4QIL_002_C8_G12 | C | U | G | U | G | true | 100 | 0 | 0 | 0.00 | ||
| HL_36982.3_Instance_4 HL_36982.3_HL_4QI2_003_C10_G14 | C | U | G | U | G | |||||||
| HL_36982.3_Sequence_4 HL_36982.3_HL_4QI2_003_C10_G14 | C | U | G | U | G | true | 100 | 0 | 0 | 0.00 | ||
| HL_36982.3_Instance_5 HL_36982.3_HL_1ZBH_001_U11_A16 | U | UU | U | C | A | |||||||
| HL_36982.3_Sequence_5 HL_36982.3_HL_1ZBH_001_U11_A16 | U | UU | U | C | A | true | 63 | 0 | 0 | 3.48 | ||
| HL_36982.3_Instance_6 HL_36982.3_HL_6AAX_001_U933_A938 | U | GG | A | A | A | |||||||
| HL_36982.3_Sequence_6 HL_36982.3_HL_6AAX_001_U933_A938 | U | GG | A | A | A | true | 31 | 0 | 0 | 6.52 | ||
| HL_36982.3_Instance_7 HL_36982.3_HL_6TQB_001_A10_U14 | A | U | A | U | U | |||||||
| HL_36982.3_Sequence_7 HL_36982.3_HL_6TQB_001_A10_U14 | A | U | A | U | U | true | 96 | 0 | 0 | 0.39 | ||
| HL_36982.3_Instance_8 HL_36982.3_HL_6TQA_003_A9_U13 | A | U | A | U | U | |||||||
| HL_36982.3_Sequence_8 HL_36982.3_HL_6TQA_003_A9_U13 | A | U | A | U | U | true | 96 | 0 | 0 | 0.39 | ||
| HL_36982.3_Instance_9 HL_36982.3_HL_5TBW_004_C132_G136 | C | U | U | C | G | |||||||
| HL_36982.3_Sequence_9 HL_36982.3_HL_5TBW_004_C132_G136 | C | U | U | C | G | true | 82 | 0 | 0 | 1.69 | ||
| HL_36982.3_Instance_10 HL_36982.3_HL_5J7L_204_G86_C90 | G | U | C | U | C | |||||||
| HL_36982.3_Sequence_10 HL_36982.3_HL_5J7L_204_G86_C90 | G | U | C | U | C | true | 87 | 0 | 0 | 1.28 |
1 2 s35 1 3 cWW 2 3 s55JAR3D SCFG/MRF model for HL_36982.3:
Character Definition | A,C,G,U,* // Define characters here InitialNode | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [3] // Initial node C7 - G11 from junction BasepairNode | Deletion Probability [0.0000000002154747] | Pair Probability [[0.008721103,0.017144279,0.009787395,0.203278453,0.000000000],[0.018323255,0.008988275,0.233709382,0.011595052,0.000000000],[0.009833070,0.195155539,0.001920276,0.027504657,0.000000000],[0.204236657,0.011408055,0.028739099,0.009655453,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.003959416,0.792873051,0.201930215,0.001187825,0.000049493] | Left Letter Distribution [0.035714286,0.035714286,0.178571429,0.750000000,0.000000000] | Right Length Distribution [0.004949270,0.989853997,0.004949270,0.000247463] | Right Letter Distribution [0.125000000,0.208333333,0.041666667,0.625000000,0.000000000] | Left Index [1] | Right Index [3] // Basepair C7 - G11 cWW HairpinNode | Num Bases [1] | Left Index [2] | Right Index [2] | Norm Constant [1.000000000000000] // Hairpin node G9:G9 Interaction | Interacting Bases [1,1] | Pair Probability [[0.291666667,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.125000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.375000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.208333333,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G9Sequences of instances from HL_36982.3:
> HL_36982.3 HL_4ZLD_001 C 7 G 11 CUGUG > HL_36982.3 HL_4Z31_001 C 6 G 10 CUGUG > HL_36982.3 HL_4QIL_002 C 8 G 12 CUGUG > HL_36982.3 HL_4QI2_003 C 10 G 14 CUGUG > HL_36982.3 HL_1ZBH_001 U 11 A 16 UUUUCA > HL_36982.3 HL_6AAX_001 U 933 A 938 UGGAAA > HL_36982.3 HL_6TQB_001 A 10 U 14 AUAUU > HL_36982.3 HL_6TQA_003 A 9 U 13 AUAUU > HL_36982.3 HL_5TBW_004 C 132 G 136 CUUCG > HL_36982.3 HL_5J7L_204 G 86 C 90 GUCUC