Alignment of HL_33239.14 sequences from 3D to the JAR3D model

Previous group | Next group | List of all groups | Motif atlas entry for HL_33239.14
The correspondence between sequences from 3D structures and the motif group is shown in blue and the JAR3D alignment of the sequences to the motif group is shown in black. Occasionally the two disagree, in which case the JAR3D alignment is shown in red.
Column number:
Node in JAR3D model:
Insertion positions indicated by I:
Position in motif group:
1
1
I

2
2

1
3
2
I

4
7

2
5
7
I

6
8

3
7
8
I

8
8

4
9
8
I

10
8

5
11
7
I

12
7

6
13
6
I

14
5

7
15
4
I

16
3

8
17
2
I

18
2

9
19
1
I


In
acceptance
region


Cutoff
score

Full
edit
distance

Interior
edit
distance

Alignment
score
deficit
HL_33239.14_Instance_1 HL_33239.14_HL_4YCO_003_G53_C61GUUCGAUUC
HL_33239.14_Sequence_1 HL_33239.14_HL_4YCO_003_G53_C61GUUCGAUUCtrue98000.34
HL_33239.14_Instance_2 HL_33239.14_HL_5AXM_003_G53_C61GUUCGAUCC
HL_33239.14_Sequence_2 HL_33239.14_HL_5AXM_003_G53_C61GUUCGAUCCtrue82002.55
HL_33239.14_Instance_3 HL_33239.14_HL_5AXM_006_G53_C61GUUCGAUCC
HL_33239.14_Sequence_3 HL_33239.14_HL_5AXM_006_G53_C61GUUCGAUCCtrue82002.55
HL_33239.14_Instance_4 HL_33239.14_HL_3ZGZ_003_G53_C61GUUCAAGUC
HL_33239.14_Sequence_4 HL_33239.14_HL_3ZGZ_003_G53_C61GUUCAAGUCtrue93001.03
HL_33239.14_Instance_5 HL_33239.14_HL_1J1U_003_G554_C562GUUCAAAUC
HL_33239.14_Sequence_5 HL_33239.14_HL_1J1U_003_G554_C562GUUCAAAUCtrue97000.45
HL_33239.14_Instance_6 HL_33239.14_HL_1J1U_006_G554_C562GUUCAAAUC
HL_33239.14_Sequence_6 HL_33239.14_HL_1J1U_006_G554_C562GUUCAAAUCtrue97000.45
HL_33239.14_Instance_7 HL_33239.14_HL_4YYE_003_G53_C61GUUCAAAUC
HL_33239.14_Sequence_7 HL_33239.14_HL_4YYE_003_G53_C61GUUCAAAUCtrue97000.45
HL_33239.14_Instance_8 HL_33239.14_HL_5HR6_003_G52_C60GUUCGAAUC
HL_33239.14_Sequence_8 HL_33239.14_HL_5HR6_003_G52_C60GUUCGAAUCtrue100000.00
HL_33239.14_Instance_9 HL_33239.14_HL_1QU2_003_G53_C61GUUCAAGUC
HL_33239.14_Sequence_9 HL_33239.14_HL_1QU2_003_G53_C61GUUCAAGUCtrue93001.03
HL_33239.14_Instance_10 HL_33239.14_HL_2ZUE_003_G953_C961GUUCAAAUC
HL_33239.14_Sequence_10 HL_33239.14_HL_2ZUE_003_G953_C961GUUCAAAUCtrue97000.45
HL_33239.14_Instance_11 HL_33239.14_HL_4JXZ_003_G953_C961GUUCGAAUC
HL_33239.14_Sequence_11 HL_33239.14_HL_4JXZ_003_G953_C961GUUCGAAUCtrue100000.00
HL_33239.14_Instance_12 HL_33239.14_HL_6PMO_005_G53_C61GUUCGAAUC
HL_33239.14_Sequence_12 HL_33239.14_HL_6PMO_005_G53_C61GUUCGAAUCtrue100000.00
HL_33239.14_Instance_13 HL_33239.14_HL_5X6B_003_G52_C60GUUCAAAUC
HL_33239.14_Sequence_13 HL_33239.14_HL_5X6B_003_G52_C60GUUCAAAUCtrue97000.45
HL_33239.14_Instance_14 HL_33239.14_HL_4RDX_006_G53_C61GUUCAAGUC
HL_33239.14_Sequence_14 HL_33239.14_HL_4RDX_006_G53_C61GUUCAAGUCtrue93001.03
HL_33239.14_Instance_15 HL_33239.14_HL_4RDX_003_G53_C61GUUCAAGUC
HL_33239.14_Sequence_15 HL_33239.14_HL_4RDX_003_G53_C61GUUCAAGUCtrue93001.03
HL_33239.14_Instance_16 HL_33239.14_HL_5HR7_006_G52_C60GUUCGAAUC
HL_33239.14_Sequence_16 HL_33239.14_HL_5HR7_006_G52_C60GUUCGAAUCtrue100000.00
HL_33239.14_Instance_17 HL_33239.14_HL_1QTQ_003_G953_C961GUUCGAAUC
HL_33239.14_Sequence_17 HL_33239.14_HL_1QTQ_003_G953_C961GUUCGAAUCtrue100000.00
HL_33239.14_Instance_18 HL_33239.14_HL_2ZZM_004_G53_C61GUUCAAAUC
HL_33239.14_Sequence_18 HL_33239.14_HL_2ZZM_004_G53_C61GUUCAAAUCtrue97000.45
HL_33239.14_Instance_19 HL_33239.14_HL_2ZZN_006_G53_C61GUUCAAAUC
HL_33239.14_Sequence_19 HL_33239.14_HL_2ZZN_006_G53_C61GUUCAAAUCtrue97000.45
HL_33239.14_Instance_20 HL_33239.14_HL_3WQY_003_G1653_C1661GUUCAAAUC
HL_33239.14_Sequence_20 HL_33239.14_HL_3WQY_003_G_1653_C_1661GUUCAAAUCtrue97000.45
HL_33239.14_Instance_21 HL_33239.14_HL_6JXM_003_G74_C82GUUCGAGUC
HL_33239.14_Sequence_21 HL_33239.14_HL_6JXM_003_G74_C82GUUCGAGUCtrue96000.58
HL_33239.14_Instance_22 HL_33239.14_HL_5WT1_003_G53_C61GUUCAAAUC
HL_33239.14_Sequence_22 HL_33239.14_HL_5WT1_003_G53_C61GUUCAAAUCtrue97000.45
HL_33239.14_Instance_23 HL_33239.14_HL_6UFM_003_G54_C62GUUCGAGUC
HL_33239.14_Sequence_23 HL_33239.14_HL_6UFM_003_G54_C62GUUCGAGUCtrue96000.58
HL_33239.14_Instance_24 HL_33239.14_HL_5AH5_008_G53_C61GUUCAAGUC
HL_33239.14_Sequence_24 HL_33239.14_HL_5AH5_008_G53_C61GUUCAAGUCtrue93001.03
HL_33239.14_Instance_25 HL_33239.14_HL_4WJ4_003_G53_C61GUUCGAGUC
HL_33239.14_Sequence_25 HL_33239.14_HL_4WJ4_003_G53_C61GUUCGAGUCtrue96000.58
HL_33239.14_Instance_26 HL_33239.14_HL_4WJ4_006_G53_C61GUUCGAGUC
HL_33239.14_Sequence_26 HL_33239.14_HL_4WJ4_006_G53_C61GUUCGAGUCtrue96000.58
HL_33239.14_Instance_27 HL_33239.14_HL_3AL0_003_G53_C61GUUCGAGUC
HL_33239.14_Sequence_27 HL_33239.14_HL_3AL0_003_G53_C61GUUCGAGUCtrue96000.58
HL_33239.14_Instance_28 HL_33239.14_HL_4P5J_003_G46_C54GUGCAACUC
HL_33239.14_Sequence_28 HL_33239.14_HL_4P5J_003_G46_C54GUGCAACUCtrue74003.59
HL_33239.14_Instance_29 HL_33239.14_HL_4TUE_035_G53_C61GUUCAAAUC
HL_33239.14_Sequence_29 HL_33239.14_HL_4TUE_035_G53_C61GUUCAAAUCtrue97000.45
HL_33239.14_Instance_30 HL_33239.14_HL_4ZDO_004_G53_C61GUUCAAUUC
HL_33239.14_Sequence_30 HL_33239.14_HL_4ZDO_004_G53_C61GUUCAAUUCtrue94000.78
HL_33239.14_Instance_31 HL_33239.14_HL_4LCK_003_G52_C60GUUCGAAUC
HL_33239.14_Sequence_31 HL_33239.14_HL_4LCK_003_G52_C60GUUCGAAUCtrue100000.00
HL_33239.14_Instance_32 HL_33239.14_HL_4GCW_004_G53_C61GUUCGAGCC
HL_33239.14_Sequence_32 HL_33239.14_HL_4GCW_004_G53_C61GUUCGAGCCtrue80002.79
HL_33239.14_Instance_33 HL_33239.14_HL_4GCW_002_G53_C61GUUCGAGCC
HL_33239.14_Sequence_33 HL_33239.14_HL_4GCW_002_G53_C61GUUCGAGCCtrue80002.79
HL_33239.14_Instance_34 HL_33239.14_HL_5B63_004_G954_C962GUUCGAAUC
HL_33239.14_Sequence_34 HL_33239.14_HL_5B63_004_G954_C962GUUCGAAUCtrue100000.00
HL_33239.14_Instance_35 HL_33239.14_HL_4WT8_217_G54_C62GUUCAAAUC
HL_33239.14_Sequence_35 HL_33239.14_HL_4WT8_217_G54_C62GUUCAAAUCtrue97000.45
HL_33239.14_Instance_36 HL_33239.14_HL_3RG5_012_G53_C61GUUCAAUUC
HL_33239.14_Sequence_36 HL_33239.14_HL_3RG5_012_G53_C61GUUCAAUUCtrue94000.78
HL_33239.14_Instance_37 HL_33239.14_HL_3RG5_008_G53_C61GUUCAAUUC
HL_33239.14_Sequence_37 HL_33239.14_HL_3RG5_008_G53_C61GUUCAAUUCtrue94000.78
HL_33239.14_Instance_38 HL_33239.14_HL_2AZX_006_G553_C561GUUCGAAUC
HL_33239.14_Sequence_38 HL_33239.14_HL_2AZX_006_G553_C561GUUCGAAUCtrue100000.00
HL_33239.14_Instance_39 HL_33239.14_HL_2AZX_009_G553_C561GUUCGAAUC
HL_33239.14_Sequence_39 HL_33239.14_HL_2AZX_009_G553_C561GUUCGAAUCtrue100000.00
HL_33239.14_Instance_40 HL_33239.14_HL_4V9Q_215_G53_C61GUUCAAAUC
HL_33239.14_Sequence_40 HL_33239.14_HL_4V9Q_215_G53_C61GUUCAAAUCtrue97000.45
HL_33239.14_Instance_41 HL_33239.14_HL_1U0B_003_G53_C61GUUCGACUC
HL_33239.14_Sequence_41 HL_33239.14_HL_1U0B_003_G53_C61GUUCGACUCtrue86001.95
HL_33239.14_Instance_42 HL_33239.14_HL_2DU3_006_G952_C960GUUCGAAUC
HL_33239.14_Sequence_42 HL_33239.14_HL_2DU3_006_G952_C960GUUCGAAUCtrue100000.00
HL_33239.14_Instance_43 HL_33239.14_HL_2DU3_003_G952_C960GUUCGAAUC
HL_33239.14_Sequence_43 HL_33239.14_HL_2DU3_003_G952_C960GUUCGAAUCtrue100000.00
HL_33239.14_Instance_44 HL_33239.14_HL_3WFS_003_G53_C61GUUCGAUUC
HL_33239.14_Sequence_44 HL_33239.14_HL_3WFS_003_G53_C61GUUCGAUUCtrue98000.34
HL_33239.14_Instance_45 HL_33239.14_HL_2BTE_004_G53_C61GUUCAAGUC
HL_33239.14_Sequence_45 HL_33239.14_HL_2BTE_004_G53_C61GUUCAAGUCtrue93001.03
HL_33239.14_Instance_46 HL_33239.14_HL_3AMU_003_G53_C61GUUCGAAUC
HL_33239.14_Sequence_46 HL_33239.14_HL_3AMU_003_G53_C61GUUCGAAUCtrue100000.00
HL_33239.14_Instance_47 HL_33239.14_HL_1N78_003_G553_C561GUUCGAUUC
HL_33239.14_Sequence_47 HL_33239.14_HL_1N78_003_G553_C561GUUCGAUUCtrue98000.34
HL_33239.14_Instance_48 HL_33239.14_HL_1WZ2_008_G965_C973GUUCGAAUC
HL_33239.14_Sequence_48 HL_33239.14_HL_1WZ2_008_G965_C973GUUCGAAUCtrue100000.00
HL_33239.14_Instance_49 HL_33239.14_HL_4X4V_001_G12_C20GUUCGAGUC
HL_33239.14_Sequence_49 HL_33239.14_HL_4X4V_001_G12_C20GUUCGAGUCtrue96000.58
HL_33239.14_Instance_50 HL_33239.14_HL_3W3S_004_G53_C61GUUCGAUUC
HL_33239.14_Sequence_50 HL_33239.14_HL_3W3S_004_G53_C61GUUCGAUUCtrue98000.34
HL_33239.14_Instance_51 HL_33239.14_HL_3W3S_008_G53_C61GUUCGAUUC
HL_33239.14_Sequence_51 HL_33239.14_HL_3W3S_008_G53_C61GUUCGAUUCtrue98000.34
HL_33239.14_Instance_52 HL_33239.14_HL_2D6F_006_G953_C961GUUCGACUC
HL_33239.14_Sequence_52 HL_33239.14_HL_2D6F_006_G953_C961GUUCGACUCtrue86001.95
HL_33239.14_Instance_53 HL_33239.14_HL_4MGN_004_G52_C60GUUCGAGUC
HL_33239.14_Sequence_53 HL_33239.14_HL_4MGN_004_G52_C60GUUCGAGUCtrue96000.58
HL_33239.14_Instance_54 HL_33239.14_HL_6MJ0_009_G66_C74GUGCAACUC
HL_33239.14_Sequence_54 HL_33239.14_HL_6MJ0_009_G66_C74GUGCAACUCtrue74003.59
HL_33239.14_Instance_55 HL_33239.14_HL_3EPH_003_G53_C61GUUCGAUCC
HL_33239.14_Sequence_55 HL_33239.14_HL_3EPH_003_G53_C61GUUCGAUCCtrue82002.55
HL_33239.14_Instance_56 HL_33239.14_HL_5WWT_002_G53_C61GUUCAAAUC
HL_33239.14_Sequence_56 HL_33239.14_HL_5WWT_002_G53_C61GUUCAAAUCtrue97000.45
HL_33239.14_Instance_57 HL_33239.14_HL_5UD5_003_G53_C61GUUAGAUUC
HL_33239.14_Sequence_57 HL_33239.14_HL_5UD5_003_G53_C61GUUAGAUUCtrue88001.73
HL_33239.14_Instance_58 HL_33239.14_HL_3ADD_004_G53_C61GUUCAAUUC
HL_33239.14_Sequence_58 HL_33239.14_HL_3ADD_004_G53_C61GUUCAAUUCtrue94000.78
HL_33239.14_Instance_59 HL_33239.14_HL_3TUP_003_G53_C61GUUCGAUUC
HL_33239.14_Sequence_59 HL_33239.14_HL_3TUP_003_G53_C61GUUCGAUUCtrue98000.34
HL_33239.14_Instance_60 HL_33239.14_HL_2DER_006_G53_C61GUUCGAAUC
HL_33239.14_Sequence_60 HL_33239.14_HL_2DER_006_G53_C61GUUCGAAUCtrue100000.00
HL_33239.14_Instance_61 HL_33239.14_HL_4V8Q_110_G66_C74GUUCGACUC
HL_33239.14_Sequence_61 HL_33239.14_HL_4V8Q_110_G66_C74GUUCGACUCtrue86001.95
HL_33239.14_Instance_62 HL_33239.14_HL_3FOZ_006_G53_C61GUUCGAUUC
HL_33239.14_Sequence_62 HL_33239.14_HL_3FOZ_006_G53_C61GUUCGAUUCtrue98000.34
HL_33239.14_Instance_63 HL_33239.14_HL_4V8N_145_G55_C63GUUCGAAUC
HL_33239.14_Sequence_63 HL_33239.14_HL_4V8N_145_G55_C63GUUCGAAUCtrue100000.00
HL_33239.14_Instance_64 HL_33239.14_HL_3ICQ_005_G53_C61GUUCGAUCC
HL_33239.14_Sequence_64 HL_33239.14_HL_3ICQ_005_G53_C61GUUCGAUCCtrue82002.55
HL_33239.14_Instance_65 HL_33239.14_HL_3AM1_008_G59_C67GUUCGAUUC
HL_33239.14_Sequence_65 HL_33239.14_HL_3AM1_008_G59_C67GUUCGAUUCtrue98000.34
HL_33239.14_Instance_66 HL_33239.14_HL_3AM1_004_G59_C67GUUCGAUUC
HL_33239.14_Sequence_66 HL_33239.14_HL_3AM1_004_G59_C67GUUCGAUUCtrue98000.34
HL_33239.14_Instance_67 HL_33239.14_HL_3IGI_001_G30_C38GUGAGAGUC
HL_33239.14_Sequence_67 HL_33239.14_HL_3IGI_001_G30_C38GUGAGAGUCtrue77003.17
HL_33239.14_Instance_68 HL_33239.14_HL_5J7L_150_U566_A575UUUUGUAUAA
HL_33239.14_Sequence_68 HL_33239.14_HL_5J7L_150_U566_A575UUUUGUAUAAtrue140012.00
HL_33239.14_Instance_69 HL_33239.14_HL_5Y85_003_G11_C19GUGCAAGUC
HL_33239.14_Sequence_69 HL_33239.14_HL_5Y85_003_G11_C19GUGCAAGUCtrue84002.22
HL_33239.14_Instance_70 HL_33239.14_HL_4WF9_018_U609_A618UUUUGUAGAA
HL_33239.14_Sequence_70 HL_33239.14_HL_4WF9_018_U609_A618UUUUGUAGAAtrue-80015.12
HL_33239.14_Instance_71 HL_33239.14_HL_6JQ6_003_G6_C14GUGAGAAUC
HL_33239.14_Sequence_71 HL_33239.14_HL_6JQ6_003_G6_C14GUGAGAAUCtrue82002.59
HL_33239.14_Instance_72 HL_33239.14_HL_6JQ6_001_G6_C14GUGAGAAUC
HL_33239.14_Sequence_72 HL_33239.14_HL_6JQ6_001_G6_C14GUGAGAAUCtrue82002.59
HL_33239.14_Instance_73 HL_33239.14_HL_6JQ5_003_G6_C14GUGAGAAUC
HL_33239.14_Sequence_73 HL_33239.14_HL_6JQ5_003_G6_C14GUGAGAAUCtrue82002.59
HL_33239.14_Instance_74 HL_33239.14_HL_6JQ5_001_G6_C14GUGAGAAUC
HL_33239.14_Sequence_74 HL_33239.14_HL_6JQ5_001_G6_C14GUGAGAAUCtrue82002.59
HL_33239.14_Instance_75 HL_33239.14_HL_5TBW_014_U640_A649UCUUGAAACA
HL_33239.14_Sequence_75 HL_33239.14_HL_5TBW_014_U640_A649UCUUGAAACAtrue-110015.61
HL_33239.14_Instance_76 HL_33239.14_HL_2CSX_003_G53_C61GUUCGAGUC
HL_33239.14_Sequence_76 HL_33239.14_HL_2CSX_003_G53_C61GUUCGAGUCtrue96000.58
HL_33239.14_Instance_77 HL_33239.14_HL_7A0S_018_U575_A584UAUUGAAGCA
HL_33239.14_Sequence_77 HL_33239.14_HL_7A0S_018_U575_A584UAUUGAAGCAtrue-90015.33
HL_33239.14_Instance_78 HL_33239.14_HL_6NWY_035_G53_C61GUUCGAAUC
HL_33239.14_Sequence_78 HL_33239.14_HL_6NWY_035_G53_C61GUUCGAAUCtrue100000.00
HL_33239.14_Instance_79 HL_33239.14_HL_4Y4O_120_U566_A575UAUUGAAGCA
HL_33239.14_Sequence_79 HL_33239.14_HL_4Y4O_120_U566_A575UAUUGAAGCAtrue-90015.33
HL_33239.14_Instance_80 HL_33239.14_HL_4V90_034_G53_C61GUUCGAUUC
HL_33239.14_Sequence_80 HL_33239.14_HL_4V90_034_G53_C61GUUCGAUUCtrue98000.34
HL_33239.14_Instance_81 HL_33239.14_HL_6CU1_001_G24_C32GUUCGAGAC
HL_33239.14_Sequence_81 HL_33239.14_HL_6CU1_001_G24_C32GUUCGAGACtrue69004.37
HL_33239.14_Instance_82 HL_33239.14_HL_2DRA_001_G12_C20GUUCGAUUC
HL_33239.14_Sequence_82 HL_33239.14_HL_2DRA_001_G12_C20GUUCGAUUCtrue98000.34
HL_33239.14_Instance_83 HL_33239.14_HL_4V9K_035_G53_C61GUUCGAAUC
HL_33239.14_Sequence_83 HL_33239.14_HL_4V9K_035_G53_C61GUUCGAAUCtrue100000.00
HL_33239.14_Instance_84 HL_33239.14_HL_4GXY_002_G49_C57GUGCAAGUC
HL_33239.14_Sequence_84 HL_33239.14_HL_4GXY_002_G49_C57GUGCAAGUCtrue84002.22
HL_33239.14_Instance_85 HL_33239.14_HL_4Y4O_134_G1281_C1289GUGAGAAUC
HL_33239.14_Sequence_85 HL_33239.14_HL_4Y4O_134_G_1281_C_1289GUGAGAAUCtrue82002.59
HL_33239.14_Instance_86 HL_33239.14_HL_1GAX_006_G952_C960GUUCAAGUC
HL_33239.14_Sequence_86 HL_33239.14_HL_1GAX_006_G952_C960GUUCAAGUCtrue93001.03
HL_33239.14_Instance_87 HL_33239.14_HL_7A0S_032_G1294_C1302GUGAGAAUC
HL_33239.14_Sequence_87 HL_33239.14_HL_7A0S_032_G_1294_C_1302GUGAGAAUCtrue82002.59
HL_33239.14_Instance_88 HL_33239.14_HL_1J2B_002_G954_C962GUUCAAGUC
HL_33239.14_Sequence_88 HL_33239.14_HL_1J2B_002_G954_C962GUUCAAGUCtrue93001.03
HL_33239.14_Instance_89 HL_33239.14_HL_4QEI_003_G53_C61GUUCGAUUC
HL_33239.14_Sequence_89 HL_33239.14_HL_4QEI_003_G53_C61GUUCGAUUCtrue98000.34
HL_33239.14_Instance_90 HL_33239.14_HL_4QEI_006_G53_C61GUUCGAUUC
HL_33239.14_Sequence_90 HL_33239.14_HL_4QEI_006_G53_C61GUUCGAUUCtrue98000.34
HL_33239.14_Instance_91 HL_33239.14_HL_5E6M_003_G53_C61GUUCGAUUC
HL_33239.14_Sequence_91 HL_33239.14_HL_5E6M_003_G53_C61GUUCGAUUCtrue98000.34
HL_33239.14_Instance_92 HL_33239.14_HL_5J7L_165_G1281_C1289GUGAAAAGC
HL_33239.14_Sequence_92 HL_33239.14_HL_5J7L_165_G_1281_C_1289GUGAAAAGCtrue56006.16
HL_33239.14_Instance_93 HL_33239.14_HL_5TBW_031_A1462_U1470AUGAGAACU
HL_33239.14_Sequence_93 HL_33239.14_HL_5TBW_031_A_1462_U_1470AUGAGAACUtrue46007.58
HL_33239.14_Instance_94 HL_33239.14_HL_5T5A_001_G21_C29GUGCAAGCC
HL_33239.14_Sequence_94 HL_33239.14_HL_5T5A_001_G21_C29GUGCAAGCCtrue68004.44
HL_33239.14_Instance_95 HL_33239.14_HL_4WF9_032_G1318_C1326GUGAGAAUC
HL_33239.14_Sequence_95 HL_33239.14_HL_4WF9_032_G_1318_C_1326GUGAGAAUCtrue82002.59
HL_33239.14_Instance_96 HL_33239.14_HL_3OVB_001_G12_C20GUUCAAGUC
HL_33239.14_Sequence_96 HL_33239.14_HL_3OVB_001_G12_C20GUUCAAGUCtrue93001.03
HL_33239.14_Instance_97 HL_33239.14_HL_2ZNI_003_G53_C61GUGAAACUC
HL_33239.14_Sequence_97 HL_33239.14_HL_2ZNI_003_G53_C61GUGAAACUCtrue64004.98
HL_33239.14_Instance_98 HL_33239.14_HL_6UFG_008_G54_C62GUUCAAGUC
HL_33239.14_Sequence_98 HL_33239.14_HL_6UFG_008_G54_C62GUUCAAGUCtrue93001.03
HL_33239.14_Instance_99 HL_33239.14_HL_4V9F_034_G1387_C1395GUGAGAACC
HL_33239.14_Sequence_99 HL_33239.14_HL_4V9F_034_G_1387_C_1395GUGAGAACCtrue66004.80
HL_33239.14_Instance_100 HL_33239.14_HL_3VJR_001_G13_C21GUUCGAUCC
HL_33239.14_Sequence_100 HL_33239.14_HL_3VJR_001_G13_C21GUUCGAUCCtrue82002.55
HL_33239.14_Instance_101 HL_33239.14_HL_3F2X_001_G17_C25GUGAAAUUC
HL_33239.14_Sequence_101 HL_33239.14_HL_3F2X_001_G17_C25GUGAAAUUCtrue76003.37
HL_33239.14_Instance_102 HL_33239.14_HL_5C45_001_G17_C25GUGAAAUUC
HL_33239.14_Sequence_102 HL_33239.14_HL_5C45_001_G17_C25GUGAAAUUCtrue76003.37
HL_33239.14_Instance_103 HL_33239.14_HL_4FRG_001_G28_C36GUGAAAUUC
HL_33239.14_Sequence_103 HL_33239.14_HL_4FRG_001_G28_C36GUGAAAUUCtrue76003.37
HL_33239.14_Instance_104 HL_33239.14_HL_3F2X_004_G68_C76GUGAAAUUC
HL_33239.14_Sequence_104 HL_33239.14_HL_3F2X_004_G68_C76GUGAAAUUCtrue76003.37
HL_33239.14_Instance_105 HL_33239.14_HL_6DN2_001_G17_C25GUGAAAUUC
HL_33239.14_Sequence_105 HL_33239.14_HL_6DN2_001_G17_C25GUGAAAUUCtrue76003.37
HL_33239.14_Instance_106 HL_33239.14_HL_6DN2_003_G68_C76GUGAAAUUC
HL_33239.14_Sequence_106 HL_33239.14_HL_6DN2_003_G68_C76GUGAAAUUCtrue76003.37
HL_33239.14_Instance_107 HL_33239.14_HL_4FRN_005_G28_C36GUGUAAUUC
HL_33239.14_Sequence_107 HL_33239.14_HL_4FRN_005_G28_C36GUGUAAUUCtrue68004.52
HL_33239.14_Instance_108 HL_33239.14_HL_5C45_003_G68_C76GUGAAAUUC
HL_33239.14_Sequence_108 HL_33239.14_HL_5C45_003_G68_C76GUGAAAUUCtrue76003.37

Conserved interactions between motif group positions in HL_33239.14:
1 2 s35 
1 9 cWW 
2 3 s35 
2 6 tWH 
3 6 s55 
4 5 s35 
6 8 perp 
6 9 s35 
7 8 s35 
8 9 perp 
3 6 6BPh
8 7 7BPh
9 8 7BPh
JAR3D SCFG/MRF model for HL_33239.14:
Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [9] // Initial node G53 - C61 from junction 
BasepairNode | Deletion Probability [0.0000193016245614] | Pair Probability [[0.002139153,0.026158058,0.002204275,0.047218748,0.000000000],[0.004000509,0.012342162,0.040663371,0.002729041,0.000000000],[0.002398413,0.760163179,0.000418822,0.005891760,0.000000000],[0.068505960,0.017757462,0.005226568,0.002182518,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.953241325,0.046714116,0.000043488,0.000001071] | Right Letter Distribution [0.357142857,0.500000000,0.071428571,0.071428571,0.000000000] | Left Index [1] | Right Index [9] // Basepair G53 - C61 cWW 
FixedNode    | Deletion Probability [0.0050000000000000] | Letter Distribution [0.019129288,0.093007916,0.037598945,0.850263852,0.000000000] | Position [2] | Left Index [2] | Right Index [8] // Fixed node on right
InitialNode  | Left Length Distribution [1.000000000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [7] // New Initial node after Fixed node
FixedNode    | Deletion Probability [0.0050000000000000] | Letter Distribution [0.413636364,0.059090909,0.231818182,0.295454545,0.000000000] | Position [2] | Left Index [2] | Right Index [7] // Fixed node on right
InitialNode  | Left Length Distribution [1.000000000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [6] // New Initial node after Fixed node
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.019766468,0.002022751,0.010047874,0.002022751,0.000000000],[0.029511360,0.159194382,0.002022751,0.002022751,0.000000000],[0.002022751,0.004894405,0.015362920,0.009262413,0.000000000],[0.693989898,0.002022751,0.011649979,0.034183797,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [6] // Basepair U54 - A58 tWH 
HairpinNode  | Num Bases [3] | Left Index [3] | Right Index [5] | Norm Constant [1.000000000000000] // Hairpin node U55:G57
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000659631,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000659631,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.231530343,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.767150396,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U55
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.186363636,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.750000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.004545455,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.059090909,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C56
Interaction  | Interacting Bases [3,3] | Pair Probability [[0.386363636,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.004545455,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.604545455,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.004545455,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G57
Sequences of instances from HL_33239.14:
> HL_33239.14 HL_4YCO_003 G   53 C   61
GUUCGAUUC
> HL_33239.14 HL_5AXM_003 G   53 C   61
GUUCGAUCC
> HL_33239.14 HL_5AXM_006 G   53 C   61
GUUCGAUCC
> HL_33239.14 HL_3ZGZ_003 G   53 C   61
GUUCAAGUC
> HL_33239.14 HL_1J1U_003 G  554 C  562
GUUCAAAUC
> HL_33239.14 HL_1J1U_006 G  554 C  562
GUUCAAAUC
> HL_33239.14 HL_4YYE_003 G   53 C   61
GUUCAAAUC
> HL_33239.14 HL_5HR6_003 G   52 C   60
GUUCGAAUC
> HL_33239.14 HL_1QU2_003 G   53 C   61
GUUCAAGUC
> HL_33239.14 HL_2ZUE_003 G  953 C  961
GUUCAAAUC
> HL_33239.14 HL_4JXZ_003 G  953 C  961
GUUCGAAUC
> HL_33239.14 HL_6PMO_005 G   53 C   61
GUUCGAAUC
> HL_33239.14 HL_5X6B_003 G   52 C   60
GUUCAAAUC
> HL_33239.14 HL_4RDX_006 G   53 C   61
GUUCAAGUC
> HL_33239.14 HL_4RDX_003 G   53 C   61
GUUCAAGUC
> HL_33239.14 HL_5HR7_006 G   52 C   60
GUUCGAAUC
> HL_33239.14 HL_1QTQ_003 G  953 C  961
GUUCGAAUC
> HL_33239.14 HL_2ZZM_004 G   53 C   61
GUUCAAAUC
> HL_33239.14 HL_2ZZN_006 G   53 C   61
GUUCAAAUC
> HL_33239.14 HL_3WQY_003 G 1653 C 1661
GUUCAAAUC
> HL_33239.14 HL_6JXM_003 G   74 C   82
GUUCGAGUC
> HL_33239.14 HL_5WT1_003 G   53 C   61
GUUCAAAUC
> HL_33239.14 HL_6UFM_003 G   54 C   62
GUUCGAGUC
> HL_33239.14 HL_5AH5_008 G   53 C   61
GUUCAAGUC
> HL_33239.14 HL_4WJ4_003 G   53 C   61
GUUCGAGUC
> HL_33239.14 HL_4WJ4_006 G   53 C   61
GUUCGAGUC
> HL_33239.14 HL_3AL0_003 G   53 C   61
GUUCGAGUC
> HL_33239.14 HL_4P5J_003 G   46 C   54
GUGCAACUC
> HL_33239.14 HL_4TUE_035 G   53 C   61
GUUCAAAUC
> HL_33239.14 HL_4ZDO_004 G   53 C   61
GUUCAAUUC
> HL_33239.14 HL_4LCK_003 G   52 C   60
GUUCGAAUC
> HL_33239.14 HL_4GCW_004 G   53 C   61
GUUCGAGCC
> HL_33239.14 HL_4GCW_002 G   53 C   61
GUUCGAGCC
> HL_33239.14 HL_5B63_004 G  954 C  962
GUUCGAAUC
> HL_33239.14 HL_4WT8_217 G   54 C   62
GUUCAAAUC
> HL_33239.14 HL_3RG5_012 G   53 C   61
GUUCAAUUC
> HL_33239.14 HL_3RG5_008 G   53 C   61
GUUCAAUUC
> HL_33239.14 HL_2AZX_006 G  553 C  561
GUUCGAAUC
> HL_33239.14 HL_2AZX_009 G  553 C  561
GUUCGAAUC
> HL_33239.14 HL_4V9Q_215 G   53 C   61
GUUCAAAUC
> HL_33239.14 HL_1U0B_003 G   53 C   61
GUUCGACUC
> HL_33239.14 HL_2DU3_006 G  952 C  960
GUUCGAAUC
> HL_33239.14 HL_2DU3_003 G  952 C  960
GUUCGAAUC
> HL_33239.14 HL_3WFS_003 G   53 C   61
GUUCGAUUC
> HL_33239.14 HL_2BTE_004 G   53 C   61
GUUCAAGUC
> HL_33239.14 HL_3AMU_003 G   53 C   61
GUUCGAAUC
> HL_33239.14 HL_1N78_003 G  553 C  561
GUUCGAUUC
> HL_33239.14 HL_1WZ2_008 G  965 C  973
GUUCGAAUC
> HL_33239.14 HL_4X4V_001 G   12 C   20
GUUCGAGUC
> HL_33239.14 HL_3W3S_004 G   53 C   61
GUUCGAUUC
> HL_33239.14 HL_3W3S_008 G   53 C   61
GUUCGAUUC
> HL_33239.14 HL_2D6F_006 G  953 C  961
GUUCGACUC
> HL_33239.14 HL_4MGN_004 G   52 C   60
GUUCGAGUC
> HL_33239.14 HL_6MJ0_009 G   66 C   74
GUGCAACUC
> HL_33239.14 HL_3EPH_003 G   53 C   61
GUUCGAUCC
> HL_33239.14 HL_5WWT_002 G   53 C   61
GUUCAAAUC
> HL_33239.14 HL_5UD5_003 G   53 C   61
GUUAGAUUC
> HL_33239.14 HL_3ADD_004 G   53 C   61
GUUCAAUUC
> HL_33239.14 HL_3TUP_003 G   53 C   61
GUUCGAUUC
> HL_33239.14 HL_2DER_006 G   53 C   61
GUUCGAAUC
> HL_33239.14 HL_4V8Q_110 G   66 C   74
GUUCGACUC
> HL_33239.14 HL_3FOZ_006 G   53 C   61
GUUCGAUUC
> HL_33239.14 HL_4V8N_145 G   55 C   63
GUUCGAAUC
> HL_33239.14 HL_3ICQ_005 G   53 C   61
GUUCGAUCC
> HL_33239.14 HL_3AM1_008 G   59 C   67
GUUCGAUUC
> HL_33239.14 HL_3AM1_004 G   59 C   67
GUUCGAUUC
> HL_33239.14 HL_3IGI_001 G   30 C   38
GUGAGAGUC
> HL_33239.14 HL_5J7L_150 U  566 A  575
UUUUGUAUAA
> HL_33239.14 HL_5Y85_003 G   11 C   19
GUGCAAGUC
> HL_33239.14 HL_4WF9_018 U  609 A  618
UUUUGUAGAA
> HL_33239.14 HL_6JQ6_003 G    6 C   14
GUGAGAAUC
> HL_33239.14 HL_6JQ6_001 G    6 C   14
GUGAGAAUC
> HL_33239.14 HL_6JQ5_003 G    6 C   14
GUGAGAAUC
> HL_33239.14 HL_6JQ5_001 G    6 C   14
GUGAGAAUC
> HL_33239.14 HL_5TBW_014 U  640 A  649
UCUUGAAACA
> HL_33239.14 HL_2CSX_003 G   53 C   61
GUUCGAGUC
> HL_33239.14 HL_7A0S_018 U  575 A  584
UAUUGAAGCA
> HL_33239.14 HL_6NWY_035 G   53 C   61
GUUCGAAUC
> HL_33239.14 HL_4Y4O_120 U  566 A  575
UAUUGAAGCA
> HL_33239.14 HL_4V90_034 G   53 C   61
GUUCGAUUC
> HL_33239.14 HL_6CU1_001 G   24 C   32
GUUCGAGAC
> HL_33239.14 HL_2DRA_001 G   12 C   20
GUUCGAUUC
> HL_33239.14 HL_4V9K_035 G   53 C   61
GUUCGAAUC
> HL_33239.14 HL_4GXY_002 G   49 C   57
GUGCAAGUC
> HL_33239.14 HL_4Y4O_134 G 1281 C 1289
GUGAGAAUC
> HL_33239.14 HL_1GAX_006 G  952 C  960
GUUCAAGUC
> HL_33239.14 HL_7A0S_032 G 1294 C 1302
GUGAGAAUC
> HL_33239.14 HL_1J2B_002 G  954 C  962
GUUCAAGUC
> HL_33239.14 HL_4QEI_003 G   53 C   61
GUUCGAUUC
> HL_33239.14 HL_4QEI_006 G   53 C   61
GUUCGAUUC
> HL_33239.14 HL_5E6M_003 G   53 C   61
GUUCGAUUC
> HL_33239.14 HL_5J7L_165 G 1281 C 1289
GUGAAAAGC
> HL_33239.14 HL_5TBW_031 A 1462 U 1470
AUGAGAACU
> HL_33239.14 HL_5T5A_001 G   21 C   29
GUGCAAGCC
> HL_33239.14 HL_4WF9_032 G 1318 C 1326
GUGAGAAUC
> HL_33239.14 HL_3OVB_001 G   12 C   20
GUUCAAGUC
> HL_33239.14 HL_2ZNI_003 G   53 C   61
GUGAAACUC
> HL_33239.14 HL_6UFG_008 G   54 C   62
GUUCAAGUC
> HL_33239.14 HL_4V9F_034 G 1387 C 1395
GUGAGAACC
> HL_33239.14 HL_3VJR_001 G   13 C   21
GUUCGAUCC
> HL_33239.14 HL_3F2X_001 G   17 C   25
GUGAAAUUC
> HL_33239.14 HL_5C45_001 G   17 C   25
GUGAAAUUC
> HL_33239.14 HL_4FRG_001 G   28 C   36
GUGAAAUUC
> HL_33239.14 HL_3F2X_004 G   68 C   76
GUGAAAUUC
> HL_33239.14 HL_6DN2_001 G   17 C   25
GUGAAAUUC
> HL_33239.14 HL_6DN2_003 G   68 C   76
GUGAAAUUC
> HL_33239.14 HL_4FRN_005 G   28 C   36
GUGUAAUUC
> HL_33239.14 HL_5C45_003 G   68 C   76
GUGAAAUUC